Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830270 | AES93601.1 | 90.407 | 344 | 6 | 2 | 1 | 344 | 1 | 317 | 0.0 | 615 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830270 | sp|Q9SUG3|ITPK3_ARATH | 68.060 | 335 | 82 | 2 | 13 | 347 | 38 | 347 | 6.43e-155 | 442 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830270 | G7K0Z3 | 90.407 | 344 | 6 | 2 | 1 | 344 | 1 | 317 | 0.0 | 615 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101810 | Msa0830270 | -0.805928 | 1.053457e-49 | -8.615850e-47 |
| Msa0620420 | Msa0830270 | 0.920744 | 8.680031e-88 | -8.615850e-47 |
| Msa0711180 | Msa0830270 | 0.821563 | 3.778565e-53 | -8.615850e-47 |
| Msa0756630 | Msa0830270 | -0.802846 | 4.621992e-49 | -8.615850e-47 |
| Msa0802470 | Msa0830270 | -0.819247 | 1.284146e-52 | -8.615850e-47 |
| Msa0830270 | Msa0981820 | -0.810720 | 1.001762e-50 | -8.615850e-47 |
| Msa0830270 | Msa1040120 | 0.800527 | 1.382130e-48 | -8.615850e-47 |
| Msa0830270 | Msa1129250 | 0.807443 | 5.042552e-50 | -8.615850e-47 |
| Msa0830270 | Msa1170040 | -0.809841 | 1.550192e-50 | -8.615850e-47 |
| Msa0830270 | Msa1380250 | 0.972646 | 4.167071e-135 | -8.615850e-47 |
| Msa0190830 | Msa0830270 | 0.816477 | 5.420004e-52 | -8.615850e-47 |
| Msa0272480 | Msa0830270 | -0.816973 | 4.194964e-52 | -8.615850e-47 |
| Msa0311580 | Msa0830270 | 0.810258 | 1.260632e-50 | -8.615850e-47 |
| Msa0312690 | Msa0830270 | -0.821544 | 3.816730e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830270 | MtrunA17_Chr5g0393881 | 90.407 | 344 | 6 | 2 | 1 | 344 | 1 | 317 | 0.0 | 613 |
| Msa0830270 | MtrunA17_Chr1g0206731 | 74.251 | 334 | 63 | 1 | 14 | 347 | 29 | 339 | 5.66e-173 | 484 |
| Msa0830270 | MtrunA17_Chr8g0366491 | 39.377 | 353 | 169 | 8 | 12 | 349 | 3 | 325 | 1.09e-79 | 248 |
| Msa0830270 | MtrunA17_Chr4g0059021 | 37.082 | 329 | 177 | 4 | 18 | 341 | 10 | 313 | 5.36e-70 | 221 |
| Msa0830270 | MtrunA17_Chr3g0111511 | 26.349 | 315 | 187 | 11 | 16 | 298 | 161 | 462 | 9.33e-19 | 87.0 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0830270 | AT4G08170.2 | 68.060 | 335 | 82 | 2 | 13 | 347 | 38 | 347 | 6.54e-156 | 442 |
| Msa0830270 | AT4G33770.1 | 62.462 | 333 | 100 | 2 | 15 | 347 | 80 | 387 | 9.16e-139 | 399 |
| Msa0830270 | AT4G33770.2 | 60.377 | 318 | 97 | 3 | 30 | 347 | 6 | 294 | 1.31e-126 | 365 |
| Msa0830270 | AT4G08170.1 | 67.986 | 278 | 64 | 2 | 70 | 347 | 7 | 259 | 1.97e-125 | 361 |
| Msa0830270 | AT4G08170.3 | 67.901 | 243 | 53 | 2 | 105 | 347 | 1 | 218 | 5.20e-105 | 307 |
| Msa0830270 | AT4G08170.6 | 67.901 | 243 | 53 | 2 | 105 | 347 | 1 | 218 | 5.20e-105 | 307 |
| Msa0830270 | AT4G08170.5 | 67.901 | 243 | 53 | 2 | 105 | 347 | 1 | 218 | 5.20e-105 | 307 |
| Msa0830270 | AT4G08170.7 | 67.901 | 243 | 53 | 2 | 105 | 347 | 1 | 218 | 5.20e-105 | 307 |
| Msa0830270 | AT4G08170.4 | 67.901 | 243 | 53 | 2 | 105 | 347 | 1 | 218 | 5.20e-105 | 307 |
| Msa0830270 | AT4G33770.3 | 58.025 | 243 | 77 | 2 | 105 | 347 | 1 | 218 | 3.90e-86 | 259 |
| Msa0830270 | AT5G16760.1 | 37.574 | 338 | 177 | 5 | 13 | 343 | 6 | 316 | 8.52e-73 | 229 |
| Msa0830270 | AT2G43980.1 | 27.119 | 236 | 137 | 7 | 74 | 298 | 248 | 459 | 2.26e-14 | 74.3 |
Find 95 sgRNAs with CRISPR-Local
Find 282 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTGAAAATGTGTTAAA+TGG | 0.120172 | 5_4:+3307577 | Msa0830270:three_prime_UTR |
| ACATCCACCAAAACCTTTAT+TGG | 0.171794 | 5_4:+3306973 | Msa0830270:CDS |
| CAAGCTTCACCCGCAATATT+TGG | 0.185898 | 5_4:-3306841 | None:intergenic |
| TCCAAGTTGTTTCAGTTTAT+AGG | 0.238870 | 5_4:-3303141 | None:intergenic |
| TCATGTGTACTGTAGGAATA+AGG | 0.297738 | 5_4:+3304035 | Msa0830270:intron |
| ATTTATAATATACTATAGTT+TGG | 0.301720 | 5_4:-3303113 | None:intergenic |
| GTTTATGTTTGAAGGATTAC+AGG | 0.302017 | 5_4:+3305806 | Msa0830270:intron |
| ATTGATATCAATTACTTTCC+AGG | 0.307544 | 5_4:+3307174 | Msa0830270:CDS |
| TATTGTTGGCGAAACTATAA+AGG | 0.308980 | 5_4:+3306699 | Msa0830270:CDS |
| TTCTGCAGATGAAGCTGATT+TGG | 0.315924 | 5_4:+3306816 | Msa0830270:CDS |
| CTTGCAAGGGCAATAAAGTT+TGG | 0.318995 | 5_4:-3303321 | None:intergenic |
| AGCCTCTCCAATAAAGGTTT+TGG | 0.327994 | 5_4:-3306980 | None:intergenic |
| CTTCAAGAGTTTGTCAATCA+TGG | 0.331239 | 5_4:+3306532 | Msa0830270:CDS |
| CTCTTTAAGATTTATATTGT+TGG | 0.331829 | 5_4:+3306685 | Msa0830270:CDS |
| CATGAATTGCTGGGTGTTGA+TGG | 0.353479 | 5_4:+3306757 | Msa0830270:CDS |
| AATCAGTAACATGTTAATTC+CGG | 0.360602 | 5_4:+3307522 | Msa0830270:three_prime_UTR |
| CTTGCAAGCCTCTCCAATAA+AGG | 0.363119 | 5_4:-3306986 | None:intergenic |
| TTTCTTCTTCTTTGATGTTA+AGG | 0.374426 | 5_4:-3303286 | None:intergenic |
| GCACTCCCATCCACAACTAA+TGG | 0.388274 | 5_4:-3306442 | None:intergenic |
| GTTTGATGTTGTCTTGCATA+AGG | 0.402731 | 5_4:+3304110 | Msa0830270:CDS |
| TCCAGCCTTAGTGACTTCAT+AGG | 0.405099 | 5_4:-3306096 | None:intergenic |
| TAATATACTATAGTTTGGTT+TGG | 0.405324 | 5_4:-3303108 | None:intergenic |
| CACATGAAACTCTTGGAAAT+CGG | 0.406306 | 5_4:-3306786 | None:intergenic |
| GAGGAGGAGAAAGTGGTTGT+TGG | 0.408102 | 5_4:+3303258 | Msa0830270:CDS |
| AATACACAAAATAGAATCTC+TGG | 0.413683 | 5_4:+3303169 | Msa0830270:five_prime_UTR |
| CATGTGTACTGTAGGAATAA+GGG | 0.417116 | 5_4:+3304036 | Msa0830270:intron |
| AATTCATGTTTGCCGACATT+AGG | 0.424932 | 5_4:-3306742 | None:intergenic |
| TGACATAAGTTGTACTTGCC+TGG | 0.426212 | 5_4:-3307192 | None:intergenic |
| CTCTTGAAAATGTGTTAAAT+GGG | 0.428516 | 5_4:+3307578 | Msa0830270:three_prime_UTR |
| AGAAGAGGAGGAGGAGAAAG+TGG | 0.428559 | 5_4:+3303251 | Msa0830270:CDS |
| CCCTATGAAGTCACTAAGGC+TGG | 0.436744 | 5_4:+3306095 | Msa0830270:CDS |
| TATTCTTCACAAGGCTAAGT+AGG | 0.437233 | 5_4:-3307407 | None:intergenic |
| TGTTCAACATTGATATGATA+CGG | 0.438246 | 5_4:+3307121 | Msa0830270:CDS |
| TGTCGGCAAACATGAATTGC+TGG | 0.445133 | 5_4:+3306747 | Msa0830270:CDS |
| GATTTGGATCCAAATATTGC+GGG | 0.452610 | 5_4:+3306832 | Msa0830270:CDS |
| CCAGCCTTAGTGACTTCATA+GGG | 0.458632 | 5_4:-3306095 | None:intergenic |
| AGTTGGCGAGTGAGTTAGAA+AGG | 0.461691 | 5_4:-3307624 | None:intergenic |
| AGCAAGTGCTGAATTGCATC+TGG | 0.465232 | 5_4:-3305862 | None:intergenic |
| ATTTGTCATTCCCAGTTGCC+AGG | 0.467034 | 5_4:+3304242 | Msa0830270:intron |
| GCTGCTGCACATGAAACTCT+TGG | 0.473192 | 5_4:-3306793 | None:intergenic |
| GGGTCAAGGATGGTTACTTC+GGG | 0.473925 | 5_4:-3305838 | None:intergenic |
| ATAAATATGTGTTCATACTC+TGG | 0.483448 | 5_4:-3307378 | None:intergenic |
| GCAAAACCATTAGTTGTGGA+TGG | 0.496864 | 5_4:+3306436 | Msa0830270:CDS |
| GAAGAATAAGTGTAAGAAGA+AGG | 0.501173 | 5_4:+3307422 | Msa0830270:CDS |
| TCCTATAAACTGAAACAACT+TGG | 0.501471 | 5_4:+3303140 | Msa0830270:five_prime_UTR |
| AGGGTCAAGGATGGTTACTT+CGG | 0.504894 | 5_4:-3305839 | None:intergenic |
| GCCAAGGATAAAATGCTGAA+TGG | 0.505219 | 5_4:-3307480 | None:intergenic |
| AAGGGACCTCCGTCGTAGAC+TGG | 0.506046 | 5_4:+3307006 | Msa0830270:CDS |
| AATAAGTGTAAGAAGAAGGA+TGG | 0.508168 | 5_4:+3307426 | Msa0830270:CDS |
| GTTCAACATTGATATGATAC+GGG | 0.516800 | 5_4:+3307122 | Msa0830270:CDS |
| CTTTATTGGAGAGGCTTGCA+AGG | 0.518978 | 5_4:+3306987 | Msa0830270:CDS |
| GAATGAATGAATACCTTGCA+AGG | 0.528628 | 5_4:-3303335 | None:intergenic |
| ATGTGTTAAATGGGTTCTCA+AGG | 0.529853 | 5_4:+3307587 | Msa0830270:three_prime_UTR |
| CACCAAAACCTTTATTGGAG+AGG | 0.533281 | 5_4:+3306978 | Msa0830270:CDS |
| AGTTGCAAAACCATTAGTTG+TGG | 0.542877 | 5_4:+3306432 | Msa0830270:intron |
| GGTTGGTGTTCCACAACAGT+TGG | 0.544219 | 5_4:+3306040 | Msa0830270:CDS |
| CAAACTTTATTGCCCTTGCA+AGG | 0.546012 | 5_4:+3303322 | Msa0830270:CDS |
| GCTGGAATGAAGTTACCGTT+AGG | 0.547992 | 5_4:+3306113 | Msa0830270:CDS |
| TATAAACTGAAACAACTTGG+AGG | 0.553180 | 5_4:+3303143 | Msa0830270:five_prime_UTR |
| CAAAACCATTAGTTGTGGAT+GGG | 0.553222 | 5_4:+3306437 | Msa0830270:CDS |
| TCATATCAATGTTGAACAAG+TGG | 0.556715 | 5_4:-3307116 | None:intergenic |
| TAACTTACAAGTTGCAACAA+AGG | 0.557019 | 5_4:-3307657 | None:intergenic |
| TTATGCAAGACAACATCAAA+CGG | 0.561000 | 5_4:-3304108 | None:intergenic |
| TATCCCCTATGAAGTCACTA+AGG | 0.566391 | 5_4:+3306091 | Msa0830270:CDS |
| ATTGATATGATACGGGAACA+TGG | 0.571666 | 5_4:+3307129 | Msa0830270:CDS |
| TGATTTGGATCCAAATATTG+CGG | 0.580725 | 5_4:+3306831 | Msa0830270:CDS |
| AACTCTTGAAGAACAAGTGG+TGG | 0.581060 | 5_4:-3306520 | None:intergenic |
| ATGTGTACTGTAGGAATAAG+GGG | 0.584925 | 5_4:+3304037 | Msa0830270:intron |
| GTTGGCGAGTGAGTTAGAAA+GGG | 0.588719 | 5_4:-3307623 | None:intergenic |
| AACGGACCTTGTTCTAACAT+CGG | 0.598617 | 5_4:-3304090 | None:intergenic |
| GGTAAGAAAATGAAGTTGAA+CGG | 0.598618 | 5_4:+3303216 | Msa0830270:exon |
| TTGATATGATACGGGAACAT+GGG | 0.599312 | 5_4:+3307130 | Msa0830270:CDS |
| ACAAACTCTTGAAGAACAAG+TGG | 0.601930 | 5_4:-3306523 | None:intergenic |
| TTTATTGGAGAGGCTTGCAA+GGG | 0.603132 | 5_4:+3306988 | Msa0830270:CDS |
| CGTTTCTCTCTACCTAATGT+CGG | 0.605707 | 5_4:+3306730 | Msa0830270:CDS |
| TGCATCTGGAGGGTCAAGGA+TGG | 0.607944 | 5_4:-3305848 | None:intergenic |
| TCTTACACTTATTCTTCACA+AGG | 0.608848 | 5_4:-3307416 | None:intergenic |
| AAGAAACCACTGCTAAGCCA+AGG | 0.617574 | 5_4:-3307496 | None:intergenic |
| AAGTGCTGAATTGCATCTGG+AGG | 0.621643 | 5_4:-3305859 | None:intergenic |
| AATGAATGAATACCTTGCAA+GGG | 0.624486 | 5_4:-3303334 | None:intergenic |
| GATACGGGAACATGGGACAA+AGG | 0.626816 | 5_4:+3307137 | Msa0830270:CDS |
| ACAATCGATGCTACAAAATG+TGG | 0.627393 | 5_4:+3305891 | Msa0830270:CDS |
| TTTGAATTAGGGTTTGTGAG+AGG | 0.631319 | 5_4:+3303195 | Msa0830270:five_prime_UTR |
| CCCAGTTGCCAGGAAAAGAG+TGG | 0.634726 | 5_4:+3304252 | Msa0830270:intron |
| CTAAACTTATCTGACTGCCA+TGG | 0.643124 | 5_4:+3305919 | Msa0830270:CDS |
| GTCGGCAAACATGAATTGCT+GGG | 0.643901 | 5_4:+3306748 | Msa0830270:CDS |
| AGTGCTGAATTGCATCTGGA+GGG | 0.651268 | 5_4:-3305858 | None:intergenic |
| AGCATACCAGTCTACGACGG+AGG | 0.652405 | 5_4:-3307012 | None:intergenic |
| TTAGTGATAACCAACTGTTG+TGG | 0.664885 | 5_4:-3306050 | None:intergenic |
| GCGAAACTATAAAGGTTGTG+AGG | 0.674225 | 5_4:+3306707 | Msa0830270:CDS |
| AGAGTGGTGTGAGATTATCG+AGG | 0.676364 | 5_4:+3304268 | Msa0830270:CDS |
| AACAAGCCGATGTTAGAACA+AGG | 0.679946 | 5_4:+3304084 | Msa0830270:CDS |
| CAGCCTTAGTGACTTCATAG+GGG | 0.686617 | 5_4:-3306094 | None:intergenic |
| GAATTGCATCTGGAGGGTCA+AGG | 0.694453 | 5_4:-3305852 | None:intergenic |
| GTAAGCATACCAGTCTACGA+CGG | 0.728858 | 5_4:-3307015 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTATAATATACTATAGTT+TGG | - | chr5_4:3303116-3303135 | None:intergenic | 10.0% |
| !!! | AGCAATTTTTTTTATTTTTT+TGG | - | chr5_4:3305637-3305656 | None:intergenic | 10.0% |
| !!! | TTATCAACTTTTTAATTTTT+AGG | + | chr5_4:3306014-3306033 | Msa0830270:intron | 10.0% |
| !!! | TATCAACTTTTTAATTTTTA+GGG | + | chr5_4:3306015-3306034 | Msa0830270:intron | 10.0% |
| !! | AAAATAAAATAAATACCTAA+CGG | - | chr5_4:3306131-3306150 | None:intergenic | 10.0% |
| !! | AACTATTATTGATAGATTAA+GGG | - | chr5_4:3303406-3303425 | None:intergenic | 15.0% |
| !! | TAACTATTATTGATAGATTA+AGG | - | chr5_4:3303407-3303426 | None:intergenic | 15.0% |
| !!! | GAACAAATTATTTTTTAGTT+TGG | + | chr5_4:3303888-3303907 | Msa0830270:intron | 15.0% |
| !!! | AGAATTAGCTTTTTATTTTA+TGG | + | chr5_4:3304458-3304477 | Msa0830270:intron | 15.0% |
| !! | TTAATCTAAATAACATCAAT+AGG | + | chr5_4:3304571-3304590 | Msa0830270:intron | 15.0% |
| !!! | CCATAATATTTTAGTAAATA+TGG | - | chr5_4:3305199-3305218 | None:intergenic | 15.0% |
| !! | CCATATTTACTAAAATATTA+TGG | + | chr5_4:3305196-3305215 | Msa0830270:intron | 15.0% |
| !! | CTATATCTGAAAATTAAATT+GGG | - | chr5_4:3306350-3306369 | None:intergenic | 15.0% |
| !! | ACTATATCTGAAAATTAAAT+TGG | - | chr5_4:3306351-3306370 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTTAATCTGTTT+GGG | + | chr5_4:3306632-3306651 | Msa0830270:intron | 15.0% |
| !! | TAATATACTATAGTTTGGTT+TGG | - | chr5_4:3303111-3303130 | None:intergenic | 20.0% |
| !! | GATATGATATATTAGAAAGA+AGG | - | chr5_4:3303460-3303479 | None:intergenic | 20.0% |
| !!! | TGTTTTTACAGAAAGTAAAA+AGG | - | chr5_4:3303771-3303790 | None:intergenic | 20.0% |
| !! | AATTGAAAACAATTGTAATG+AGG | - | chr5_4:3303809-3303828 | None:intergenic | 20.0% |
| !!! | CATTACAATTGTTTTCAATT+TGG | + | chr5_4:3303809-3303828 | Msa0830270:intron | 20.0% |
| !!! | TGGAAAAGTTATAATTCTTT+TGG | + | chr5_4:3305216-3305235 | Msa0830270:intron | 20.0% |
| !! | CTGATTTCATTATATCTATT+AGG | - | chr5_4:3305490-3305509 | None:intergenic | 20.0% |
| !!! | TAATGTTGGTAAATTGAATT+AGG | - | chr5_4:3305962-3305981 | None:intergenic | 20.0% |
| !! | TAATTCAATTTACCAACATT+AGG | + | chr5_4:3305961-3305980 | Msa0830270:intron | 20.0% |
| !!! | AAGTTGATAAATAACACAAA+TGG | - | chr5_4:3306004-3306023 | None:intergenic | 20.0% |
| !!! | AACTTTTTAATTTTTAGGGA+AGG | + | chr5_4:3306019-3306038 | Msa0830270:intron | 20.0% |
| !! | TTATCTGACAAATATATAAC+AGG | - | chr5_4:3306262-3306281 | None:intergenic | 20.0% |
| !! | AGAAGAATACAAAAAGATTA+AGG | - | chr5_4:3306606-3306625 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTTTTAATCTGTT+TGG | + | chr5_4:3306631-3306650 | Msa0830270:intron | 20.0% |
| !!! | TTTGTTTTTTAATCTGTTTG+GGG | + | chr5_4:3306633-3306652 | Msa0830270:intron | 20.0% |
| !!! | CTCTTTAAGATTTATATTGT+TGG | + | chr5_4:3306685-3306704 | Msa0830270:CDS | 20.0% |
| !!! | ACCAATTTTTTTTTTCTTTC+CGG | - | chr5_4:3307544-3307563 | None:intergenic | 20.0% |
| !!! | TTATATATTTTCGACATTAG+TGG | + | chr5_4:3307677-3307696 | Msa0830270:three_prime_UTR | 20.0% |
| ! | AATACACAAAATAGAATCTC+TGG | + | chr5_4:3303169-3303188 | Msa0830270:five_prime_UTR | 25.0% |
| !! | AATCTCTGGATTTTTGAATT+AGG | + | chr5_4:3303183-3303202 | Msa0830270:five_prime_UTR | 25.0% |
| !! | ATCTCTGGATTTTTGAATTA+GGG | + | chr5_4:3303184-3303203 | Msa0830270:five_prime_UTR | 25.0% |
| ! | TTTCTTCTTCTTTGATGTTA+AGG | - | chr5_4:3303289-3303308 | None:intergenic | 25.0% |
| ! | AAGAATGTAAATTGACATTC+CGG | - | chr5_4:3303703-3303722 | None:intergenic | 25.0% |
| !! | TTTAATCCCTATATTTTGCA+AGG | - | chr5_4:3303836-3303855 | None:intergenic | 25.0% |
| !!! | TTTTTTATGCATCAAATCAG+TGG | + | chr5_4:3304364-3304383 | Msa0830270:intron | 25.0% |
| !!! | TTTTATTTTATGGCGTAACT+TGG | + | chr5_4:3304468-3304487 | Msa0830270:intron | 25.0% |
| ! | TTAATCATGCTTCTATTACT+TGG | + | chr5_4:3304858-3304877 | Msa0830270:intron | 25.0% |
| !! | TATTAGAGAGTTCTGATAAA+TGG | + | chr5_4:3305525-3305544 | Msa0830270:intron | 25.0% |
| !! | TGAAATATGTGAGAAGTTTT+TGG | + | chr5_4:3305556-3305575 | Msa0830270:intron | 25.0% |
| !! | TAGTCTATGAATTTTGTAAC+TGG | + | chr5_4:3305715-3305734 | Msa0830270:intron | 25.0% |
| ! | ATGTAGTAAATAAGTTACCA+TGG | - | chr5_4:3305939-3305958 | None:intergenic | 25.0% |
| ! | AGTAATGAAAAACCTAATGT+TGG | - | chr5_4:3305976-3305995 | None:intergenic | 25.0% |
| !!! | TTTTAATTTTTAGGGAAGGT+TGG | + | chr5_4:3306023-3306042 | Msa0830270:intron | 25.0% |
| ! | AGAAGAACACAAAAAGATTA+AGG | - | chr5_4:3306578-3306597 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTAATCTGTTTGG+GGG | + | chr5_4:3306634-3306653 | Msa0830270:intron | 25.0% |
| ! | TGTTCAACATTGATATGATA+CGG | + | chr5_4:3307121-3307140 | Msa0830270:CDS | 25.0% |
| ! | ATTGATATCAATTACTTTCC+AGG | + | chr5_4:3307174-3307193 | Msa0830270:CDS | 25.0% |
| ! | ATAAATATGTGTTCATACTC+TGG | - | chr5_4:3307381-3307400 | None:intergenic | 25.0% |
| ! | AATCAGTAACATGTTAATTC+CGG | + | chr5_4:3307522-3307541 | Msa0830270:three_prime_UTR | 25.0% |
| ! | TCCGGAAAGAAAAAAAAAAT+TGG | + | chr5_4:3307540-3307559 | Msa0830270:three_prime_UTR | 25.0% |
| ! | CTCTTGAAAATGTGTTAAAT+GGG | + | chr5_4:3307578-3307597 | Msa0830270:three_prime_UTR | 25.0% |
| TCCTATAAACTGAAACAACT+TGG | + | chr5_4:3303140-3303159 | Msa0830270:five_prime_UTR | 30.0% | |
| ! | TCCAAGTTGTTTCAGTTTAT+AGG | - | chr5_4:3303144-3303163 | None:intergenic | 30.0% |
| TATAAACTGAAACAACTTGG+AGG | + | chr5_4:3303143-3303162 | Msa0830270:five_prime_UTR | 30.0% | |
| GGTAAGAAAATGAAGTTGAA+CGG | + | chr5_4:3303216-3303235 | Msa0830270:exon | 30.0% | |
| AATGAATGAATACCTTGCAA+GGG | - | chr5_4:3303337-3303356 | None:intergenic | 30.0% | |
| ACCTTGAATTATCAAGCAAA+GGG | - | chr5_4:3303606-3303625 | None:intergenic | 30.0% | |
| AAAGGAAAGAGGAAAATGTA+TGG | - | chr5_4:3303728-3303747 | None:intergenic | 30.0% | |
| ! | ACATTTTCCTCTTTCCTTTT+TGG | + | chr5_4:3303729-3303748 | Msa0830270:intron | 30.0% |
| AAAACATCCAAAAAGGAAAG+AGG | - | chr5_4:3303739-3303758 | None:intergenic | 30.0% | |
| ! | TTTCCTTTTTGGATGTTTTC+TGG | + | chr5_4:3303740-3303759 | Msa0830270:intron | 30.0% |
| AATCCAGAAAACATCCAAAA+AGG | - | chr5_4:3303746-3303765 | None:intergenic | 30.0% | |
| ATTTGGTCCTTGCAAAATAT+AGG | + | chr5_4:3303826-3303845 | Msa0830270:intron | 30.0% | |
| TTTGGTCCTTGCAAAATATA+GGG | + | chr5_4:3303827-3303846 | Msa0830270:intron | 30.0% | |
| !! | CTCTGTTGATGAACTATTTT+AGG | + | chr5_4:3303985-3304004 | Msa0830270:intron | 30.0% |
| ! | CACTTAAGAATCAGTATTGA+AGG | - | chr5_4:3304012-3304031 | None:intergenic | 30.0% |
| TTATGCAAGACAACATCAAA+CGG | - | chr5_4:3304111-3304130 | None:intergenic | 30.0% | |
| TTCTAGTACAATCAGAAAGT+GGG | - | chr5_4:3304323-3304342 | None:intergenic | 30.0% | |
| ! | TTTCTAGTACAATCAGAAAG+TGG | - | chr5_4:3304324-3304343 | None:intergenic | 30.0% |
| TCAAACTTAATTCACAGCAT+TGG | - | chr5_4:3304396-3304415 | None:intergenic | 30.0% | |
| GCTGTGAATTAAGTTTGAAA+CGG | + | chr5_4:3304398-3304417 | Msa0830270:intron | 30.0% | |
| GATTAATAATCCTCAGTTGT+TGG | - | chr5_4:3304557-3304576 | None:intergenic | 30.0% | |
| TAAATAACATCAATAGGCTG+TGG | + | chr5_4:3304577-3304596 | Msa0830270:intron | 30.0% | |
| AGTCTTCTCTAATAAGTCTA+AGG | - | chr5_4:3304634-3304653 | None:intergenic | 30.0% | |
| GAAATATCAACCTATGGAAT+CGG | - | chr5_4:3304672-3304691 | None:intergenic | 30.0% | |
| AGCATAAAGGAAAGAAAATC+AGG | + | chr5_4:3304748-3304767 | Msa0830270:intron | 30.0% | |
| !!! | AACACTGCGTCATATTTTTT+TGG | - | chr5_4:3304926-3304945 | None:intergenic | 30.0% |
| GACAACTGTAATATTGACAA+TGG | + | chr5_4:3305111-3305130 | Msa0830270:intron | 30.0% | |
| AATATTGACAATGGCAAACT+TGG | + | chr5_4:3305120-3305139 | Msa0830270:intron | 30.0% | |
| TGTTCTCAATATTGAGACAA+TGG | - | chr5_4:3305147-3305166 | None:intergenic | 30.0% | |
| TATAATGAAATCAGCCTGAA+AGG | + | chr5_4:3305496-3305515 | Msa0830270:intron | 30.0% | |
| CTCTAATATTTGTTCCTTTC+AGG | - | chr5_4:3305513-3305532 | None:intergenic | 30.0% | |
| !!! | TTATTTTTTTGGCTCGTGAA+AGG | - | chr5_4:3305626-3305645 | None:intergenic | 30.0% |
| ! | TAGTCTGTGAATTTTGCATT+TGG | + | chr5_4:3305750-3305769 | Msa0830270:intron | 30.0% |
| ! | TGTGAATTTTGCATTTGGAT+GGG | + | chr5_4:3305755-3305774 | Msa0830270:intron | 30.0% |
| AAGTTTGTAGGTAAAATTGC+TGG | - | chr5_4:3305782-3305801 | None:intergenic | 30.0% | |
| ACATAAACAGACAAGTTTGT+AGG | - | chr5_4:3305794-3305813 | None:intergenic | 30.0% | |
| ACTTGTCTGTTTATGTTTGA+AGG | + | chr5_4:3305798-3305817 | Msa0830270:intron | 30.0% | |
| GTTTATGTTTGAAGGATTAC+AGG | + | chr5_4:3305806-3305825 | Msa0830270:intron | 30.0% | |
| TAGAGGAATAGATCTGATAT+CGG | + | chr5_4:3306177-3306196 | Msa0830270:intron | 30.0% | |
| AAATGCACTCAGATGATATA+TGG | - | chr5_4:3306219-3306238 | None:intergenic | 30.0% | |
| ! | GCTATAATCGTCAATTTTCA+TGG | + | chr5_4:3306311-3306330 | Msa0830270:intron | 30.0% |
| TATTGTTGGCGAAACTATAA+AGG | + | chr5_4:3306699-3306718 | Msa0830270:CDS | 30.0% | |
| ! | TGATTTGGATCCAAATATTG+CGG | + | chr5_4:3306831-3306850 | Msa0830270:CDS | 30.0% |
| !! | AAGTAGTCTTCATTTTTGTC+TGG | - | chr5_4:3306897-3306916 | None:intergenic | 30.0% |
| ! | ATAATGTCTGTCTTGATTTG+AGG | - | chr5_4:3307059-3307078 | None:intergenic | 30.0% |
| TCATATCAATGTTGAACAAG+TGG | - | chr5_4:3307119-3307138 | None:intergenic | 30.0% | |
| GTTCAACATTGATATGATAC+GGG | + | chr5_4:3307122-3307141 | Msa0830270:CDS | 30.0% | |
| ATAAAGCTGTTCAACCAATT+TGG | - | chr5_4:3307328-3307347 | None:intergenic | 30.0% | |
| TCTTACACTTATTCTTCACA+AGG | - | chr5_4:3307419-3307438 | None:intergenic | 30.0% | |
| GAAGAATAAGTGTAAGAAGA+AGG | + | chr5_4:3307422-3307441 | Msa0830270:CDS | 30.0% | |
| AATAAGTGTAAGAAGAAGGA+TGG | + | chr5_4:3307426-3307445 | Msa0830270:CDS | 30.0% | |
| !! | CCATTTAACACATTTTCAAG+AGG | - | chr5_4:3307580-3307599 | None:intergenic | 30.0% |
| CCTCTTGAAAATGTGTTAAA+TGG | + | chr5_4:3307577-3307596 | Msa0830270:three_prime_UTR | 30.0% | |
| TAACTTACAAGTTGCAACAA+AGG | - | chr5_4:3307660-3307679 | None:intergenic | 30.0% | |
| TTTGAATTAGGGTTTGTGAG+AGG | + | chr5_4:3303195-3303214 | Msa0830270:five_prime_UTR | 35.0% | |
| GAATGAATGAATACCTTGCA+AGG | - | chr5_4:3303338-3303357 | None:intergenic | 35.0% | |
| GCATATAAGGTGGAATATTC+TGG | - | chr5_4:3303584-3303603 | None:intergenic | 35.0% | |
| ! | TATCAAGCAAAGGGCATATA+AGG | - | chr5_4:3303597-3303616 | None:intergenic | 35.0% |
| GACCTTGAATTATCAAGCAA+AGG | - | chr5_4:3303607-3303626 | None:intergenic | 35.0% | |
| TTAATCCATCCATGCTTATC+CGG | + | chr5_4:3303681-3303700 | Msa0830270:intron | 35.0% | |
| TCATGTGTACTGTAGGAATA+AGG | + | chr5_4:3304035-3304054 | Msa0830270:intron | 35.0% | |
| CATGTGTACTGTAGGAATAA+GGG | + | chr5_4:3304036-3304055 | Msa0830270:intron | 35.0% | |
| ATGTGTACTGTAGGAATAAG+GGG | + | chr5_4:3304037-3304056 | Msa0830270:intron | 35.0% | |
| GTTTGATGTTGTCTTGCATA+AGG | + | chr5_4:3304110-3304129 | Msa0830270:CDS | 35.0% | |
| ! | GTGAATTAAGTTTGAAACGG+TGG | + | chr5_4:3304401-3304420 | Msa0830270:intron | 35.0% |
| TTCAAGTATTCCAACAACTG+AGG | + | chr5_4:3304544-3304563 | Msa0830270:intron | 35.0% | |
| TTCAGGGAAATATCAACCTA+TGG | - | chr5_4:3304678-3304697 | None:intergenic | 35.0% | |
| ! | GGTTGATATTTCCCTGAATT+AGG | + | chr5_4:3304680-3304699 | Msa0830270:intron | 35.0% |
| AGTCAGATAGTCCTAATTCA+GGG | - | chr5_4:3304694-3304713 | None:intergenic | 35.0% | |
| AAGTCAGATAGTCCTAATTC+AGG | - | chr5_4:3304695-3304714 | None:intergenic | 35.0% | |
| TGAATTAGGACTATCTGACT+TGG | + | chr5_4:3304694-3304713 | Msa0830270:intron | 35.0% | |
| GAAGTATAAGCACAGCATAA+AGG | + | chr5_4:3304735-3304754 | Msa0830270:intron | 35.0% | |
| !! | GACGCAGTGTTTTTAAATAG+CGG | + | chr5_4:3304935-3304954 | Msa0830270:intron | 35.0% |
| TGCTTACATAGATCTACGAT+GGG | - | chr5_4:3305313-3305332 | None:intergenic | 35.0% | |
| AGGGCTGTTCAAATATAGAA+CGG | + | chr5_4:3305388-3305407 | Msa0830270:intron | 35.0% | |
| ACCAAGTTTCTTGAAGTACA+TGG | + | chr5_4:3305421-3305440 | Msa0830270:intron | 35.0% | |
| AGATTACAGCTTTGCCATAT+TGG | + | chr5_4:3305670-3305689 | Msa0830270:intron | 35.0% | |
| ! | CTGTGAATTTTGCATTTGGA+TGG | + | chr5_4:3305754-3305773 | Msa0830270:intron | 35.0% |
| ! | GTGAATTTTGCATTTGGATG+GGG | + | chr5_4:3305756-3305775 | Msa0830270:intron | 35.0% |
| ACAATCGATGCTACAAAATG+TGG | + | chr5_4:3305891-3305910 | Msa0830270:CDS | 35.0% | |
| TTAGTGATAACCAACTGTTG+TGG | - | chr5_4:3306053-3306072 | None:intergenic | 35.0% | |
| TCTAGTGAAAGTAAGGATCT+CGG | - | chr5_4:3306161-3306180 | None:intergenic | 35.0% | |
| CTATTCCTCTAGTGAAAGTA+AGG | - | chr5_4:3306168-3306187 | None:intergenic | 35.0% | |
| ATATAGTAGCATCTCTCTTG+TGG | + | chr5_4:3306364-3306383 | Msa0830270:intron | 35.0% | |
| AGTTGCAAAACCATTAGTTG+TGG | + | chr5_4:3306432-3306451 | Msa0830270:intron | 35.0% | |
| CAAAACCATTAGTTGTGGAT+GGG | + | chr5_4:3306437-3306456 | Msa0830270:CDS | 35.0% | |
| ACAAACTCTTGAAGAACAAG+TGG | - | chr5_4:3306526-3306545 | None:intergenic | 35.0% | |
| CTTCAAGAGTTTGTCAATCA+TGG | + | chr5_4:3306532-3306551 | Msa0830270:CDS | 35.0% | |
| !!! | TTTTTTAATCTGTTTGGGGG+AGG | + | chr5_4:3306637-3306656 | Msa0830270:intron | 35.0% |
| AATTCATGTTTGCCGACATT+AGG | - | chr5_4:3306745-3306764 | None:intergenic | 35.0% | |
| CACATGAAACTCTTGGAAAT+CGG | - | chr5_4:3306789-3306808 | None:intergenic | 35.0% | |
| GATTTGGATCCAAATATTGC+GGG | + | chr5_4:3306832-3306851 | Msa0830270:CDS | 35.0% | |
| ACATCCACCAAAACCTTTAT+TGG | + | chr5_4:3306973-3306992 | Msa0830270:CDS | 35.0% | |
| TTATATTCCATCACACCTCT+AGG | + | chr5_4:3307089-3307108 | Msa0830270:intron | 35.0% | |
| TATATTCCATCACACCTCTA+GGG | + | chr5_4:3307090-3307109 | Msa0830270:intron | 35.0% | |
| ATTGATATGATACGGGAACA+TGG | + | chr5_4:3307129-3307148 | Msa0830270:CDS | 35.0% | |
| TTGATATGATACGGGAACAT+GGG | + | chr5_4:3307130-3307149 | Msa0830270:CDS | 35.0% | |
| ACATACGCAATGCTCATAAA+TGG | - | chr5_4:3307289-3307308 | None:intergenic | 35.0% | |
| TTTATCTTTAACCCTCTGCA+GGG | + | chr5_4:3307343-3307362 | Msa0830270:intron | 35.0% | |
| TATTCTTCACAAGGCTAAGT+AGG | - | chr5_4:3307410-3307429 | None:intergenic | 35.0% | |
| ! | TCCATTCAGCATTTTATCCT+TGG | + | chr5_4:3307479-3307498 | Msa0830270:three_prime_UTR | 35.0% |
| ! | ATGTGTTAAATGGGTTCTCA+AGG | + | chr5_4:3307587-3307606 | Msa0830270:three_prime_UTR | 35.0% |
| !!! | ACAAAGGCATTTTGATCAGT+TGG | - | chr5_4:3307644-3307663 | None:intergenic | 35.0% |
| TGAAGAAGAAGAAGAAGAGG+AGG | + | chr5_4:3303239-3303258 | Msa0830270:CDS | 40.0% | |
| CTTGCAAGGGCAATAAAGTT+TGG | - | chr5_4:3303324-3303343 | None:intergenic | 40.0% | |
| CAAACTTTATTGCCCTTGCA+AGG | + | chr5_4:3303322-3303341 | Msa0830270:CDS | 40.0% | |
| ! | GCCCTTTGCTTGATAATTCA+AGG | + | chr5_4:3303602-3303621 | Msa0830270:intron | 40.0% |
| ATTGACATTCCGGATAAGCA+TGG | - | chr5_4:3303693-3303712 | None:intergenic | 40.0% | |
| CACTCACTGTGATGTTAAAG+TGG | - | chr5_4:3303915-3303934 | None:intergenic | 40.0% | |
| AGTGTTGTCATGTGTACTGT+AGG | + | chr5_4:3304028-3304047 | Msa0830270:intron | 40.0% | |
| AACAAGCCGATGTTAGAACA+AGG | + | chr5_4:3304084-3304103 | Msa0830270:CDS | 40.0% | |
| AACGGACCTTGTTCTAACAT+CGG | - | chr5_4:3304093-3304112 | None:intergenic | 40.0% | |
| TAGTACAATCAGAAAGTGGG+TGG | - | chr5_4:3304320-3304339 | None:intergenic | 40.0% | |
| ! | AAGTTTGAAACGGTGGTGAA+TGG | + | chr5_4:3304408-3304427 | Msa0830270:intron | 40.0% |
| CCGATCATGATTCATGATGA+GGG | - | chr5_4:3304507-3304526 | None:intergenic | 40.0% | |
| CCCTCATCATGAATCATGAT+CGG | + | chr5_4:3304504-3304523 | Msa0830270:intron | 40.0% | |
| TCCGATCATGATTCATGATG+AGG | - | chr5_4:3304508-3304527 | None:intergenic | 40.0% | |
| GAGACATTCTTGATCTCATC+AGG | + | chr5_4:3304786-3304805 | Msa0830270:intron | 40.0% | |
| CTGCTTACATAGATCTACGA+TGG | - | chr5_4:3305314-3305333 | None:intergenic | 40.0% | |
| CCAGTTGAAGTTTCTGTTGT+GGG | - | chr5_4:3305362-3305381 | None:intergenic | 40.0% | |
| ACCAGTTGAAGTTTCTGTTG+TGG | - | chr5_4:3305363-3305382 | None:intergenic | 40.0% | |
| GTTCTATATTTGAACAGCCC+TGG | - | chr5_4:3305389-3305408 | None:intergenic | 40.0% | |
| GCCATGTACTTCAAGAAACT+TGG | - | chr5_4:3305425-3305444 | None:intergenic | 40.0% | |
| TGGCAAAGCTGTAATCTCAA+AGG | - | chr5_4:3305667-3305686 | None:intergenic | 40.0% | |
| TACAGCTTTGCCATATTGGA+TGG | + | chr5_4:3305674-3305693 | Msa0830270:intron | 40.0% | |
| ACAGCTTTGCCATATTGGAT+GGG | + | chr5_4:3305675-3305694 | Msa0830270:intron | 40.0% | |
| CTAAACTTATCTGACTGCCA+TGG | + | chr5_4:3305919-3305938 | Msa0830270:CDS | 40.0% | |
| TATCCCCTATGAAGTCACTA+AGG | + | chr5_4:3306091-3306110 | Msa0830270:CDS | 40.0% | |
| GAGATCCTTACTTTCACTAG+AGG | + | chr5_4:3306160-3306179 | Msa0830270:intron | 40.0% | |
| GCAAAACCATTAGTTGTGGA+TGG | + | chr5_4:3306436-3306455 | Msa0830270:CDS | 40.0% | |
| AACTCTTGAAGAACAAGTGG+TGG | - | chr5_4:3306523-3306542 | None:intergenic | 40.0% | |
| GCGAAACTATAAAGGTTGTG+AGG | + | chr5_4:3306707-3306726 | Msa0830270:CDS | 40.0% | |
| CGTTTCTCTCTACCTAATGT+CGG | + | chr5_4:3306730-3306749 | Msa0830270:CDS | 40.0% | |
| TTCTGCAGATGAAGCTGATT+TGG | + | chr5_4:3306816-3306835 | Msa0830270:CDS | 40.0% | |
| TGTAACAACAGTGTCACAGT+AGG | - | chr5_4:3306951-3306970 | None:intergenic | 40.0% | |
| !! | CTCTCCAATAAAGGTTTTGG+TGG | - | chr5_4:3306980-3306999 | None:intergenic | 40.0% |
| CACCAAAACCTTTATTGGAG+AGG | + | chr5_4:3306978-3306997 | Msa0830270:CDS | 40.0% | |
| ! | AGCCTCTCCAATAAAGGTTT+TGG | - | chr5_4:3306983-3307002 | None:intergenic | 40.0% |
| TTTATTGGAGAGGCTTGCAA+GGG | + | chr5_4:3306988-3307007 | Msa0830270:CDS | 40.0% | |
| TGACATAAGTTGTACTTGCC+TGG | - | chr5_4:3307195-3307214 | None:intergenic | 40.0% | |
| AATTTGCCGTTGTGCCAAAT+TGG | + | chr5_4:3307311-3307330 | Msa0830270:intron | 40.0% | |
| GTTCAACCAATTTGGCACAA+CGG | - | chr5_4:3307320-3307339 | None:intergenic | 40.0% | |
| CTTTATCTTTAACCCTCTGC+AGG | + | chr5_4:3307342-3307361 | Msa0830270:intron | 40.0% | |
| ! | ATTTTTCCATACCCTGCAGA+GGG | - | chr5_4:3307357-3307376 | None:intergenic | 40.0% |
| GCCAAGGATAAAATGCTGAA+TGG | - | chr5_4:3307483-3307502 | None:intergenic | 40.0% | |
| ! | TTTTATCCTTGGCTTAGCAG+TGG | + | chr5_4:3307490-3307509 | Msa0830270:three_prime_UTR | 40.0% |
| CGGTGAAGAAGAAGAAGAAG+AGG | + | chr5_4:3303236-3303255 | Msa0830270:CDS | 45.0% | |
| AGAAGAAGAAGAAGAGGAGG+AGG | + | chr5_4:3303242-3303261 | Msa0830270:CDS | 45.0% | |
| ! | CAAGCAAAGGGCATATAAGG+TGG | - | chr5_4:3303594-3303613 | None:intergenic | 45.0% |
| ACATTCCGGATAAGCATGGA+TGG | - | chr5_4:3303689-3303708 | None:intergenic | 45.0% | |
| ! | TGTTTTCTCGCTGTCATCGA+TGG | + | chr5_4:3304152-3304171 | Msa0830270:intron | 45.0% |
| ATTTGTCATTCCCAGTTGCC+AGG | + | chr5_4:3304242-3304261 | Msa0830270:intron | 45.0% | |
| ! | ATCTCACACCACTCTTTTCC+TGG | - | chr5_4:3304263-3304282 | None:intergenic | 45.0% |
| AGAGTGGTGTGAGATTATCG+AGG | + | chr5_4:3304268-3304287 | Msa0830270:CDS | 45.0% | |
| TACAATCAGAAAGTGGGTGG+AGG | - | chr5_4:3304317-3304336 | None:intergenic | 45.0% | |
| ! | GGCTGGATAATCTAGTTTGC+TGG | + | chr5_4:3304429-3304448 | Msa0830270:intron | 45.0% |
| GTTTCTGTTGTGGGACAAAG+AGG | - | chr5_4:3305353-3305372 | None:intergenic | 45.0% | |
| CCCACAACAGAAACTTCAAC+TGG | + | chr5_4:3305359-3305378 | Msa0830270:intron | 45.0% | |
| AAACTTCAACTGGTACGCCA+GGG | + | chr5_4:3305369-3305388 | Msa0830270:intron | 45.0% | |
| CAGCTTTGCCATATTGGATG+GGG | + | chr5_4:3305676-3305695 | Msa0830270:intron | 45.0% | |
| AGGGTCAAGGATGGTTACTT+CGG | - | chr5_4:3305842-3305861 | None:intergenic | 45.0% | |
| ! | AGTGCTGAATTGCATCTGGA+GGG | - | chr5_4:3305861-3305880 | None:intergenic | 45.0% |
| !! | AAGTGCTGAATTGCATCTGG+AGG | - | chr5_4:3305862-3305881 | None:intergenic | 45.0% |
| !! | AGCAAGTGCTGAATTGCATC+TGG | - | chr5_4:3305865-3305884 | None:intergenic | 45.0% |
| CAGCCTTAGTGACTTCATAG+GGG | - | chr5_4:3306097-3306116 | None:intergenic | 45.0% | |
| CCAGCCTTAGTGACTTCATA+GGG | - | chr5_4:3306098-3306117 | None:intergenic | 45.0% | |
| TCCAGCCTTAGTGACTTCAT+AGG | - | chr5_4:3306099-3306118 | None:intergenic | 45.0% | |
| GCTGGAATGAAGTTACCGTT+AGG | + | chr5_4:3306113-3306132 | Msa0830270:CDS | 45.0% | |
| TTTAATCTGTTTGGGGGAGG+TGG | + | chr5_4:3306640-3306659 | Msa0830270:intron | 45.0% | |
| TTAATCTGTTTGGGGGAGGT+GGG | + | chr5_4:3306641-3306660 | Msa0830270:intron | 45.0% | |
| TGTCGGCAAACATGAATTGC+TGG | + | chr5_4:3306747-3306766 | Msa0830270:CDS | 45.0% | |
| GTCGGCAAACATGAATTGCT+GGG | + | chr5_4:3306748-3306767 | Msa0830270:CDS | 45.0% | |
| !! | CATGAATTGCTGGGTGTTGA+TGG | + | chr5_4:3306757-3306776 | Msa0830270:CDS | 45.0% |
| CAAGCTTCACCCGCAATATT+TGG | - | chr5_4:3306844-3306863 | None:intergenic | 45.0% | |
| CTTGCAAGCCTCTCCAATAA+AGG | - | chr5_4:3306989-3307008 | None:intergenic | 45.0% | |
| CTTTATTGGAGAGGCTTGCA+AGG | + | chr5_4:3306987-3307006 | Msa0830270:CDS | 45.0% | |
| GTAAGCATACCAGTCTACGA+CGG | - | chr5_4:3307018-3307037 | None:intergenic | 45.0% | |
| ! | CATTTTTCCATACCCTGCAG+AGG | - | chr5_4:3307358-3307377 | None:intergenic | 45.0% |
| AAGAAACCACTGCTAAGCCA+AGG | - | chr5_4:3307499-3307518 | None:intergenic | 45.0% | |
| GTTGGCGAGTGAGTTAGAAA+GGG | - | chr5_4:3307626-3307645 | None:intergenic | 45.0% | |
| AGTTGGCGAGTGAGTTAGAA+AGG | - | chr5_4:3307627-3307646 | None:intergenic | 45.0% | |
| AGAAGAGGAGGAGGAGAAAG+TGG | + | chr5_4:3303251-3303270 | Msa0830270:CDS | 50.0% | |
| GAGGAGGAGAAAGTGGTTGT+TGG | + | chr5_4:3303258-3303277 | Msa0830270:CDS | 50.0% | |
| ! | CCACTCTTTTCCTGGCAACT+GGG | - | chr5_4:3304255-3304274 | None:intergenic | 50.0% |
| ! | ACCACTCTTTTCCTGGCAAC+TGG | - | chr5_4:3304256-3304275 | None:intergenic | 50.0% |
| AATCAGAAAGTGGGTGGAGG+TGG | - | chr5_4:3304314-3304333 | None:intergenic | 50.0% | |
| TTGAAACGGTGGTGAATGGC+TGG | + | chr5_4:3304412-3304431 | Msa0830270:intron | 50.0% | |
| !! | AGCAATGCTGCCGATTCCAT+AGG | + | chr5_4:3304659-3304678 | Msa0830270:intron | 50.0% |
| TCGTGAATCGCAGAAAGTGG+TGG | - | chr5_4:3305072-3305091 | None:intergenic | 50.0% | |
| CAGTCGTGAATCGCAGAAAG+TGG | - | chr5_4:3305075-3305094 | None:intergenic | 50.0% | |
| GAACACTGGACAGCTTATGG+AGG | - | chr5_4:3305267-3305286 | None:intergenic | 50.0% | |
| TGTCCAGTGTTCGCCATGAT+GGG | + | chr5_4:3305275-3305294 | Msa0830270:intron | 50.0% | |
| GAAACTTCAACTGGTACGCC+AGG | + | chr5_4:3305368-3305387 | Msa0830270:intron | 50.0% | |
| TTTGCCATATTGGATGGGGC+TGG | + | chr5_4:3305680-3305699 | Msa0830270:intron | 50.0% | |
| ATCACCAGCCCCATCCAATA+TGG | - | chr5_4:3305687-3305706 | None:intergenic | 50.0% | |
| GGGTCAAGGATGGTTACTTC+GGG | - | chr5_4:3305841-3305860 | None:intergenic | 50.0% | |
| GAATTGCATCTGGAGGGTCA+AGG | - | chr5_4:3305855-3305874 | None:intergenic | 50.0% | |
| ! | GGTTGGTGTTCCACAACAGT+TGG | + | chr5_4:3306040-3306059 | Msa0830270:CDS | 50.0% |
| CCCTATGAAGTCACTAAGGC+TGG | + | chr5_4:3306095-3306114 | Msa0830270:CDS | 50.0% | |
| GCACTCCCATCCACAACTAA+TGG | - | chr5_4:3306445-3306464 | None:intergenic | 50.0% | |
| TAATCTGTTTGGGGGAGGTG+GGG | + | chr5_4:3306642-3306661 | Msa0830270:intron | 50.0% | |
| GCTGCTGCACATGAAACTCT+TGG | - | chr5_4:3306796-3306815 | None:intergenic | 50.0% | |
| TGAACAAGTGGAGTCCCTAG+AGG | - | chr5_4:3307107-3307126 | None:intergenic | 50.0% | |
| GATACGGGAACATGGGACAA+AGG | + | chr5_4:3307137-3307156 | Msa0830270:CDS | 50.0% | |
| CTTTAACCCTCTGCAGGGTA+TGG | + | chr5_4:3307348-3307367 | Msa0830270:intron | 50.0% | |
| CCCAGTTGCCAGGAAAAGAG+TGG | + | chr5_4:3304252-3304271 | Msa0830270:intron | 55.0% | |
| AGCTTATGGAGGCAGGACTG+CGG | - | chr5_4:3305256-3305275 | None:intergenic | 55.0% | |
| ACTGGACAGCTTATGGAGGC+AGG | - | chr5_4:3305263-3305282 | None:intergenic | 55.0% | |
| GGCGAACACTGGACAGCTTA+TGG | - | chr5_4:3305270-3305289 | None:intergenic | 55.0% | |
| CTGTCCAGTGTTCGCCATGA+TGG | + | chr5_4:3305274-3305293 | Msa0830270:intron | 55.0% | |
| GTCCAGTGTTCGCCATGATG+GGG | + | chr5_4:3305276-3305295 | Msa0830270:intron | 55.0% | |
| TCCAGTGTTCGCCATGATGG+GGG | + | chr5_4:3305277-3305296 | Msa0830270:intron | 55.0% | |
| TGCATCTGGAGGGTCAAGGA+TGG | - | chr5_4:3305851-3305870 | None:intergenic | 55.0% | |
| AGCATACCAGTCTACGACGG+AGG | - | chr5_4:3307015-3307034 | None:intergenic | 55.0% | |
| ! | TGGAGTCCCTAGAGGTGTGA+TGG | - | chr5_4:3307099-3307118 | None:intergenic | 55.0% |
| CAGAAAGTGGGTGGAGGTGG+AGG | - | chr5_4:3304311-3304330 | None:intergenic | 60.0% | |
| GCTTATGGAGGCAGGACTGC+GGG | - | chr5_4:3305255-3305274 | None:intergenic | 60.0% | |
| ACCCCCATCATGGCGAACAC+TGG | - | chr5_4:3305281-3305300 | None:intergenic | 60.0% | |
| ! | AGTGTTCGCCATGATGGGGG+TGG | + | chr5_4:3305280-3305299 | Msa0830270:intron | 60.0% |
| ! | GTGTTCGCCATGATGGGGGT+GGG | + | chr5_4:3305281-3305300 | Msa0830270:intron | 60.0% |
| ! | TGTTCGCCATGATGGGGGTG+GGG | + | chr5_4:3305282-3305301 | Msa0830270:intron | 60.0% |
| AAGGGACCTCCGTCGTAGAC+TGG | + | chr5_4:3307006-3307025 | Msa0830270:CDS | 60.0% | |
| GGAGGTGGGGTTTGCACTGC+AGG | + | chr5_4:3306655-3306674 | Msa0830270:intron | 65.0% | |
| GGTGGGGTTTGCACTGCAGG+TGG | + | chr5_4:3306658-3306677 | Msa0830270:intron | 65.0% | |
| ! | CGCCATGATGGGGGTGGGGT+CGG | + | chr5_4:3305286-3305305 | Msa0830270:intron | 70.0% |
| GTCCGACCCCACCCCCATCA+TGG | - | chr5_4:3305291-3305310 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 3302980 | 3307723 | 3302980 | ID=Msa0830270;Name=Msa0830270 |
| chr5_4 | mRNA | 3302980 | 3307723 | 3302980 | ID=Msa0830270-mRNA-1;Parent=Msa0830270;Name=Msa0830270-mRNA-1;_AED=0.15;_eAED=0.16;_QI=245|0.88|0.9|1|1|1|10|268|350 |
| chr5_4 | exon | 3302980 | 3303343 | 3302980 | ID=Msa0830270-mRNA-1:exon:1223;Parent=Msa0830270-mRNA-1 |
| chr5_4 | exon | 3304050 | 3304131 | 3304050 | ID=Msa0830270-mRNA-1:exon:1224;Parent=Msa0830270-mRNA-1 |
| chr5_4 | exon | 3304257 | 3304289 | 3304257 | ID=Msa0830270-mRNA-1:exon:1225;Parent=Msa0830270-mRNA-1 |
| chr5_4 | exon | 3305820 | 3305940 | 3305820 | ID=Msa0830270-mRNA-1:exon:1226;Parent=Msa0830270-mRNA-1 |
| chr5_4 | exon | 3306036 | 3306134 | 3306036 | ID=Msa0830270-mRNA-1:exon:1227;Parent=Msa0830270-mRNA-1 |
| chr5_4 | exon | 3306434 | 3306553 | 3306434 | ID=Msa0830270-mRNA-1:exon:1228;Parent=Msa0830270-mRNA-1 |
| chr5_4 | exon | 3306677 | 3306853 | 3306677 | ID=Msa0830270-mRNA-1:exon:1229;Parent=Msa0830270-mRNA-1 |
| chr5_4 | exon | 3306972 | 3307027 | 3306972 | ID=Msa0830270-mRNA-1:exon:1230;Parent=Msa0830270-mRNA-1 |
| chr5_4 | exon | 3307111 | 3307264 | 3307111 | ID=Msa0830270-mRNA-1:exon:1231;Parent=Msa0830270-mRNA-1 |
| chr5_4 | exon | 3307364 | 3307723 | 3307364 | ID=Msa0830270-mRNA-1:exon:1232;Parent=Msa0830270-mRNA-1 |
| chr5_4 | five_prime_UTR | 3302980 | 3303224 | 3302980 | ID=Msa0830270-mRNA-1:five_prime_utr;Parent=Msa0830270-mRNA-1 |
| chr5_4 | CDS | 3303225 | 3303343 | 3303225 | ID=Msa0830270-mRNA-1:cds;Parent=Msa0830270-mRNA-1 |
| chr5_4 | CDS | 3304050 | 3304131 | 3304050 | ID=Msa0830270-mRNA-1:cds;Parent=Msa0830270-mRNA-1 |
| chr5_4 | CDS | 3304257 | 3304289 | 3304257 | ID=Msa0830270-mRNA-1:cds;Parent=Msa0830270-mRNA-1 |
| chr5_4 | CDS | 3305820 | 3305940 | 3305820 | ID=Msa0830270-mRNA-1:cds;Parent=Msa0830270-mRNA-1 |
| chr5_4 | CDS | 3306036 | 3306134 | 3306036 | ID=Msa0830270-mRNA-1:cds;Parent=Msa0830270-mRNA-1 |
| chr5_4 | CDS | 3306434 | 3306553 | 3306434 | ID=Msa0830270-mRNA-1:cds;Parent=Msa0830270-mRNA-1 |
| chr5_4 | CDS | 3306677 | 3306853 | 3306677 | ID=Msa0830270-mRNA-1:cds;Parent=Msa0830270-mRNA-1 |
| chr5_4 | CDS | 3306972 | 3307027 | 3306972 | ID=Msa0830270-mRNA-1:cds;Parent=Msa0830270-mRNA-1 |
| chr5_4 | CDS | 3307111 | 3307264 | 3307111 | ID=Msa0830270-mRNA-1:cds;Parent=Msa0830270-mRNA-1 |
| chr5_4 | CDS | 3307364 | 3307455 | 3307364 | ID=Msa0830270-mRNA-1:cds;Parent=Msa0830270-mRNA-1 |
| chr5_4 | three_prime_UTR | 3307456 | 3307723 | 3307456 | ID=Msa0830270-mRNA-1:three_prime_utr;Parent=Msa0830270-mRNA-1 |
| Gene Sequence |
| Protein sequence |
