Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620420 | XP_013453304.1 | 90.262 | 267 | 3 | 1 | 82 | 348 | 63 | 306 | 1.07e-168 | 482 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620420 | sp|Q9SUG3|ITPK3_ARATH | 67.897 | 271 | 62 | 2 | 81 | 351 | 102 | 347 | 1.97e-119 | 352 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620420 | A0A072UNB5 | 90.262 | 267 | 3 | 1 | 82 | 348 | 63 | 306 | 5.11e-169 | 482 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0101810 | Msa0620420 | -0.820050 | 8.418742e-53 | -8.615850e-47 |
| Msa0620420 | Msa0621590 | 0.800270 | 1.559386e-48 | -8.615850e-47 |
| Msa0620420 | Msa0658570 | 0.803784 | 2.954349e-49 | -8.615850e-47 |
| Msa0620420 | Msa0703490 | 0.806618 | 7.538652e-50 | -8.615850e-47 |
| Msa0620420 | Msa0711180 | 0.815853 | 7.471387e-52 | -8.615850e-47 |
| Msa0620420 | Msa0719490 | -0.801199 | 1.007896e-48 | -8.615850e-47 |
| Msa0620420 | Msa0756630 | -0.827727 | 1.333237e-54 | -8.615850e-47 |
| Msa0620420 | Msa0802470 | -0.841422 | 4.797949e-58 | -8.615850e-47 |
| Msa0620420 | Msa0830270 | 0.920744 | 8.680031e-88 | -8.615850e-47 |
| Msa0620420 | Msa0891040 | 0.803695 | 3.083417e-49 | -8.615850e-47 |
| Msa0620420 | Msa0894890 | 0.804038 | 2.616609e-49 | -8.615850e-47 |
| Msa0620420 | Msa0981820 | -0.822085 | 2.860579e-53 | -8.615850e-47 |
| Msa0620420 | Msa1040120 | 0.818820 | 1.605693e-52 | -8.615850e-47 |
| Msa0620420 | Msa1104000 | 0.803436 | 3.489943e-49 | -8.615850e-47 |
| Msa0620420 | Msa1128160 | 0.811466 | 6.901912e-51 | -8.615850e-47 |
| Msa0620420 | Msa1129250 | 0.824061 | 9.897701e-54 | -8.615850e-47 |
| Msa0620420 | Msa1165360 | 0.810301 | 1.233562e-50 | -8.615850e-47 |
| Msa0620420 | Msa1181550 | 0.810979 | 8.805730e-51 | -8.615850e-47 |
| Msa0620420 | Msa1314170 | 0.805318 | 1.414658e-49 | -8.615850e-47 |
| Msa0620420 | Msa1335860 | 0.807269 | 5.488391e-50 | -8.615850e-47 |
| Msa0620420 | Msa1351620 | 0.800610 | 1.329474e-48 | -8.615850e-47 |
| Msa0620420 | Msa1367080 | 0.801233 | 9.916436e-49 | -8.615850e-47 |
| Msa0620420 | Msa1376890 | 0.803200 | 3.904884e-49 | -8.615850e-47 |
| Msa0620420 | Msa1380250 | 0.903156 | 4.639078e-79 | -8.615850e-47 |
| Msa0171300 | Msa0620420 | 0.818227 | 2.188549e-52 | -8.615850e-47 |
| Msa0190830 | Msa0620420 | 0.816982 | 4.176687e-52 | -8.615850e-47 |
| Msa0459770 | Msa0620420 | -0.802662 | 5.043532e-49 | -8.615850e-47 |
| Msa0245880 | Msa0620420 | 0.801209 | 1.002930e-48 | -8.615850e-47 |
| Msa0272480 | Msa0620420 | -0.825802 | 3.843666e-54 | -8.615850e-47 |
| Msa0311580 | Msa0620420 | 0.809948 | 1.469914e-50 | -8.615850e-47 |
| Msa0312690 | Msa0620420 | -0.830171 | 3.413305e-55 | -8.615850e-47 |
| Msa0320100 | Msa0620420 | 0.800206 | 1.607028e-48 | -8.615850e-47 |
| Msa0333720 | Msa0620420 | -0.812959 | 3.260754e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620420 | MtrunA17_Chr5g0393881 | 80.259 | 309 | 29 | 3 | 40 | 348 | 41 | 317 | 1.57e-157 | 444 |
| Msa0620420 | MtrunA17_Chr1g0206731 | 73.063 | 271 | 50 | 1 | 81 | 351 | 92 | 339 | 8.23e-133 | 382 |
| Msa0620420 | MtrunA17_Chr8g0366491 | 39.100 | 289 | 129 | 9 | 81 | 353 | 68 | 325 | 2.01e-55 | 186 |
| Msa0620420 | MtrunA17_Chr4g0059021 | 36.667 | 270 | 141 | 4 | 81 | 345 | 69 | 313 | 4.86e-50 | 170 |
| Msa0620420 | MtrunA17_Chr4g0048901 | 66.087 | 115 | 21 | 1 | 1 | 97 | 58 | 172 | 3.38e-40 | 145 |
| Msa0620420 | MtrunA17_Chr3g0111511 | 28.033 | 239 | 141 | 8 | 81 | 301 | 236 | 461 | 8.69e-16 | 78.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0620420 | AT4G08170.1 | 67.897 | 271 | 62 | 2 | 81 | 351 | 14 | 259 | 4.38e-121 | 350 |
| Msa0620420 | AT4G08170.2 | 67.897 | 271 | 62 | 2 | 81 | 351 | 102 | 347 | 2.01e-120 | 352 |
| Msa0620420 | AT4G08170.3 | 67.901 | 243 | 53 | 2 | 109 | 351 | 1 | 218 | 2.29e-105 | 308 |
| Msa0620420 | AT4G08170.6 | 67.901 | 243 | 53 | 2 | 109 | 351 | 1 | 218 | 2.29e-105 | 308 |
| Msa0620420 | AT4G08170.5 | 67.901 | 243 | 53 | 2 | 109 | 351 | 1 | 218 | 2.29e-105 | 308 |
| Msa0620420 | AT4G08170.7 | 67.901 | 243 | 53 | 2 | 109 | 351 | 1 | 218 | 2.29e-105 | 308 |
| Msa0620420 | AT4G08170.4 | 67.901 | 243 | 53 | 2 | 109 | 351 | 1 | 218 | 2.29e-105 | 308 |
| Msa0620420 | AT4G33770.2 | 53.526 | 312 | 111 | 4 | 40 | 351 | 17 | 294 | 9.76e-103 | 305 |
| Msa0620420 | AT4G33770.1 | 53.526 | 312 | 111 | 4 | 40 | 351 | 110 | 387 | 1.50e-101 | 305 |
| Msa0620420 | AT4G33770.3 | 58.025 | 243 | 77 | 2 | 109 | 351 | 1 | 218 | 1.73e-86 | 260 |
| Msa0620420 | AT5G16760.1 | 36.496 | 274 | 140 | 5 | 81 | 347 | 70 | 316 | 6.39e-52 | 175 |
| Msa0620420 | AT2G43980.1 | 26.180 | 233 | 150 | 5 | 81 | 302 | 238 | 459 | 1.56e-14 | 75.1 |
Find 82 sgRNAs with CRISPR-Local
Find 232 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTCTTGAAAATGTGTTAAA+TGG | 0.120172 | 4_2:+71906309 | Msa0620420:three_prime_UTR |
| ACATCCACCAAAACCTTTAT+TGG | 0.171794 | 4_2:+71905705 | Msa0620420:CDS |
| CAAGCTTCACCCGCAATATT+TGG | 0.185898 | 4_2:-71905573 | None:intergenic |
| GTTTATGTTTGAAGGATTAC+AGG | 0.302017 | 4_2:+71904539 | Msa0620420:CDS |
| ATTGATATCAATTACTTTCC+AGG | 0.307544 | 4_2:+71905906 | Msa0620420:CDS |
| TATTGTTGGCGAAACTATAA+AGG | 0.308980 | 4_2:+71905431 | Msa0620420:CDS |
| TTCTGCAGATGAAGCTGATT+TGG | 0.315924 | 4_2:+71905548 | Msa0620420:CDS |
| AGCCTCTCCAATAAAGGTTT+TGG | 0.327994 | 4_2:-71905712 | None:intergenic |
| CTTCAAGAGTTTGTCAATCA+TGG | 0.331239 | 4_2:+71905264 | Msa0620420:CDS |
| CTCTTTAAGATTTATATTGT+TGG | 0.331829 | 4_2:+71905417 | Msa0620420:CDS |
| TGAAATGGATTTGATGTTGT+TGG | 0.352798 | 4_2:-71902753 | None:intergenic |
| CATGAATTGCTGGGTGTTGA+TGG | 0.353479 | 4_2:+71905489 | Msa0620420:CDS |
| AATCAGTAACATGTTAATTC+CGG | 0.360602 | 4_2:+71906254 | Msa0620420:three_prime_UTR |
| CTTGCAAGCCTCTCCAATAA+AGG | 0.363119 | 4_2:-71905718 | None:intergenic |
| ACTTGTCTGTTTATGTTTGA+AGG | 0.368287 | 4_2:+71904531 | Msa0620420:CDS |
| GCACTCCCATCCACAACTAA+TGG | 0.388274 | 4_2:-71905174 | None:intergenic |
| TTTGTAGAGGTCTTGTGAAA+TGG | 0.395328 | 4_2:-71902768 | None:intergenic |
| CAGTTGGGAGTGAGTTAGAA+AGG | 0.400385 | 4_2:-71906356 | None:intergenic |
| TCCAGCCTTAGTGACTTCAT+AGG | 0.405099 | 4_2:-71904828 | None:intergenic |
| CACATGAAACTCTTGGAAAT+CGG | 0.406306 | 4_2:-71905518 | None:intergenic |
| TCGCCGGAGCTAAACGCTTC+CGG | 0.409378 | 4_2:+71902891 | Msa0620420:CDS |
| AATTCATGTTTGCCGACATT+AGG | 0.424932 | 4_2:-71905474 | None:intergenic |
| TGACATAAGTTGTACTTGCC+TGG | 0.426212 | 4_2:-71905924 | None:intergenic |
| CTCTTGAAAATGTGTTAAAT+GGG | 0.428516 | 4_2:+71906310 | Msa0620420:three_prime_UTR |
| ACATAAACAGACAAGTTTGT+AGG | 0.434145 | 4_2:-71904524 | None:intergenic |
| CCCTATGAAGTCACTAAGGC+TGG | 0.436744 | 4_2:+71904827 | Msa0620420:CDS |
| TATTCTTCACAAGGCTAAGT+AGG | 0.437233 | 4_2:-71906139 | None:intergenic |
| TGTTCAACATTGATATGATA+CGG | 0.438246 | 4_2:+71905853 | Msa0620420:CDS |
| TGTCGGCAAACATGAATTGC+TGG | 0.445133 | 4_2:+71905479 | Msa0620420:CDS |
| GACACCGTCCGCCGCCTCGC+CGG | 0.452153 | 4_2:+71902875 | Msa0620420:CDS |
| GATTTGGATCCAAATATTGC+GGG | 0.452610 | 4_2:+71905564 | Msa0620420:CDS |
| CCAGCCTTAGTGACTTCATA+GGG | 0.458632 | 4_2:-71904827 | None:intergenic |
| AGCAAGTGCTGAATTGCATC+TGG | 0.465232 | 4_2:-71904595 | None:intergenic |
| GTTTAGCTCCGGCGAGGCGG+CGG | 0.471158 | 4_2:-71902883 | None:intergenic |
| GCTGCTGCACATGAAACTCT+TGG | 0.473192 | 4_2:-71905525 | None:intergenic |
| GAAATGGATTTGATGTTGTT+GGG | 0.473240 | 4_2:-71902752 | None:intergenic |
| GGGTCAAGGATGGTTACTTC+GGG | 0.473925 | 4_2:-71904571 | None:intergenic |
| ATAAATATGTGTTCATACTC+TGG | 0.483448 | 4_2:-71906110 | None:intergenic |
| GCAAAACCATTAGTTGTGGA+TGG | 0.496864 | 4_2:+71905168 | Msa0620420:CDS |
| GAAGAATAAGTGTAAGAAGA+AGG | 0.501173 | 4_2:+71906154 | Msa0620420:CDS |
| AGTTGGGAGTGAGTTAGAAA+GGG | 0.504161 | 4_2:-71906355 | None:intergenic |
| AGGGTCAAGGATGGTTACTT+CGG | 0.504894 | 4_2:-71904572 | None:intergenic |
| GCCAAGGATAAAATGCTGAA+TGG | 0.505219 | 4_2:-71906212 | None:intergenic |
| AAGGGACCTCCGTCGTAGAC+TGG | 0.506046 | 4_2:+71905738 | Msa0620420:CDS |
| AGCTCCGGCGAGGCGGCGGA+CGG | 0.507347 | 4_2:-71902879 | None:intergenic |
| AATAAGTGTAAGAAGAAGGA+TGG | 0.508168 | 4_2:+71906158 | Msa0620420:CDS |
| GTTCAACATTGATATGATAC+GGG | 0.516800 | 4_2:+71905854 | Msa0620420:CDS |
| CTTTATTGGAGAGGCTTGCA+AGG | 0.518978 | 4_2:+71905719 | Msa0620420:CDS |
| ATGTGTTAAATGGGTTCTCA+AGG | 0.529853 | 4_2:+71906319 | Msa0620420:three_prime_UTR |
| CACCAAAACCTTTATTGGAG+AGG | 0.533281 | 4_2:+71905710 | Msa0620420:CDS |
| CCACCGGAAGCGTTTAGCTC+CGG | 0.536672 | 4_2:-71902894 | None:intergenic |
| AGTTGCAAAACCATTAGTTG+TGG | 0.542877 | 4_2:+71905164 | Msa0620420:intron |
| GGTTGGTGTTCCACAACAGT+TGG | 0.544219 | 4_2:+71904772 | Msa0620420:CDS |
| GCTGGAATGAAGTTACCGTT+AGG | 0.547992 | 4_2:+71904845 | Msa0620420:CDS |
| CAAAACCATTAGTTGTGGAT+GGG | 0.553222 | 4_2:+71905169 | Msa0620420:CDS |
| TCATATCAATGTTGAACAAG+TGG | 0.556715 | 4_2:-71905848 | None:intergenic |
| TAACTTACAAGTTGCAACAA+AGG | 0.557019 | 4_2:-71906388 | None:intergenic |
| AGCGTTTAGCTCCGGCGAGG+CGG | 0.563776 | 4_2:-71902886 | None:intergenic |
| TATCCCCTATGAAGTCACTA+AGG | 0.566391 | 4_2:+71904823 | Msa0620420:CDS |
| ATTGATATGATACGGGAACA+TGG | 0.571666 | 4_2:+71905861 | Msa0620420:CDS |
| TGATTTGGATCCAAATATTG+CGG | 0.580725 | 4_2:+71905563 | Msa0620420:CDS |
| AACTCTTGAAGAACAAGTGG+TGG | 0.581060 | 4_2:-71905252 | None:intergenic |
| TTGATATGATACGGGAACAT+GGG | 0.599312 | 4_2:+71905862 | Msa0620420:CDS |
| ACAAACTCTTGAAGAACAAG+TGG | 0.601930 | 4_2:-71905255 | None:intergenic |
| TTTATTGGAGAGGCTTGCAA+GGG | 0.603132 | 4_2:+71905720 | Msa0620420:CDS |
| CGTTTCTCTCTACCTAATGT+CGG | 0.605707 | 4_2:+71905462 | Msa0620420:CDS |
| TGCATCTGGAGGGTCAAGGA+TGG | 0.607944 | 4_2:-71904581 | None:intergenic |
| TCTTACACTTATTCTTCACA+AGG | 0.608848 | 4_2:-71906148 | None:intergenic |
| AAGAAACCACTGCTAAGCCA+AGG | 0.617574 | 4_2:-71906228 | None:intergenic |
| AAGTGCTGAATTGCATCTGG+AGG | 0.621643 | 4_2:-71904592 | None:intergenic |
| GATACGGGAACATGGGACAA+AGG | 0.626816 | 4_2:+71905869 | Msa0620420:CDS |
| ACAATCGATGCTACAAAATG+TGG | 0.627393 | 4_2:+71904624 | Msa0620420:CDS |
| CTAAACTTATCTGACTGCCA+TGG | 0.643124 | 4_2:+71904652 | Msa0620420:CDS |
| GTCGGCAAACATGAATTGCT+GGG | 0.643901 | 4_2:+71905480 | Msa0620420:CDS |
| AGTGCTGAATTGCATCTGGA+GGG | 0.651268 | 4_2:-71904591 | None:intergenic |
| AGCATACCAGTCTACGACGG+AGG | 0.652405 | 4_2:-71905744 | None:intergenic |
| TTAGTGATAACCAACTGTTG+TGG | 0.664885 | 4_2:-71904782 | None:intergenic |
| GCGAAACTATAAAGGTTGTG+AGG | 0.674225 | 4_2:+71905439 | Msa0620420:CDS |
| CAGCCTTAGTGACTTCATAG+GGG | 0.686617 | 4_2:-71904826 | None:intergenic |
| GAATTGCATCTGGAGGGTCA+AGG | 0.694453 | 4_2:-71904585 | None:intergenic |
| GGAAGCGTTTAGCTCCGGCG+AGG | 0.716112 | 4_2:-71902889 | None:intergenic |
| GTAAGCATACCAGTCTACGA+CGG | 0.728858 | 4_2:-71905747 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AGCAATTTTTTTTATTTTTT+TGG | - | chr4_2:71904370-71904389 | None:intergenic | 10.0% |
| !!! | TTTATCAACTTTTAATTTTT+AGG | + | chr4_2:71904746-71904765 | Msa0620420:intron | 10.0% |
| !!! | TTATCAACTTTTAATTTTTA+GGG | + | chr4_2:71904747-71904766 | Msa0620420:intron | 10.0% |
| !! | AAAATAAAATAAATACCTAA+CGG | - | chr4_2:71904863-71904882 | None:intergenic | 10.0% |
| !!! | AGAATTAGCTTTTTATTTTA+TGG | + | chr4_2:71903192-71903211 | Msa0620420:intron | 15.0% |
| !! | TTAATCTAAATAACATCAAT+AGG | + | chr4_2:71903305-71903324 | Msa0620420:intron | 15.0% |
| !!! | CCATAATATTTTAGTAAATA+TGG | - | chr4_2:71903932-71903951 | None:intergenic | 15.0% |
| !! | CCATATTTACTAAAATATTA+TGG | + | chr4_2:71903929-71903948 | Msa0620420:intron | 15.0% |
| !! | CTATATCTGAAAATTAAATT+GGG | - | chr4_2:71905082-71905101 | None:intergenic | 15.0% |
| !! | ACTATATCTGAAAATTAAAT+TGG | - | chr4_2:71905083-71905102 | None:intergenic | 15.0% |
| !!! | TTTTGTTTTTTAATCTGTTT+GGG | + | chr4_2:71905364-71905383 | Msa0620420:intron | 15.0% |
| !!! | TGGAAAAGTTATAATTCTTT+TGG | + | chr4_2:71903949-71903968 | Msa0620420:intron | 20.0% |
| !! | CTGATTTCATTATATCTATT+AGG | - | chr4_2:71904223-71904242 | None:intergenic | 20.0% |
| !!! | TAATGTTGGTAAATTGAATT+AGG | - | chr4_2:71904695-71904714 | None:intergenic | 20.0% |
| !! | TAATTCAATTTACCAACATT+AGG | + | chr4_2:71904694-71904713 | Msa0620420:intron | 20.0% |
| !!! | AAGTTGATAAATAACACAAA+TGG | - | chr4_2:71904737-71904756 | None:intergenic | 20.0% |
| !! | TTATCTGACAAATATATAAC+AGG | - | chr4_2:71904994-71905013 | None:intergenic | 20.0% |
| !! | AGAAGAATACAAAAAGATTA+AGG | - | chr4_2:71905338-71905357 | None:intergenic | 20.0% |
| !!! | CTTTTGTTTTTTAATCTGTT+TGG | + | chr4_2:71905363-71905382 | Msa0620420:intron | 20.0% |
| !!! | TTTGTTTTTTAATCTGTTTG+GGG | + | chr4_2:71905365-71905384 | Msa0620420:intron | 20.0% |
| !!! | CTCTTTAAGATTTATATTGT+TGG | + | chr4_2:71905417-71905436 | Msa0620420:CDS | 20.0% |
| !!! | ACCAATTTTTTTTTTCTTTC+CGG | - | chr4_2:71906276-71906295 | None:intergenic | 20.0% |
| !!! | TTATATATTTTCGACATTAG+TGG | + | chr4_2:71906408-71906427 | Msa0620420:three_prime_UTR | 20.0% |
| !!! | TTTTTTATGCATCAAATCAG+TGG | + | chr4_2:71903098-71903117 | Msa0620420:intron | 25.0% |
| !!! | TTTTATTTTATGGCGTAACT+TGG | + | chr4_2:71903202-71903221 | Msa0620420:intron | 25.0% |
| ! | TTAATCATGCTTCTATTACT+TGG | + | chr4_2:71903592-71903611 | Msa0620420:intron | 25.0% |
| !! | TATTAGAGAGTTCTGATAAA+TGG | + | chr4_2:71904258-71904277 | Msa0620420:intron | 25.0% |
| !! | TGAAATATGTGAGAAGTTTT+TGG | + | chr4_2:71904289-71904308 | Msa0620420:intron | 25.0% |
| !! | TAGTCTATGAATTTTGTAAC+TGG | + | chr4_2:71904448-71904467 | Msa0620420:intron | 25.0% |
| ! | ATGTAGTAAATAAGTTACCA+TGG | - | chr4_2:71904672-71904691 | None:intergenic | 25.0% |
| ! | AGTAATGAAAAACCTAATGT+TGG | - | chr4_2:71904709-71904728 | None:intergenic | 25.0% |
| !!! | CAACTTTTAATTTTTAGGGA+AGG | + | chr4_2:71904751-71904770 | Msa0620420:intron | 25.0% |
| !!! | TTTTAATTTTTAGGGAAGGT+TGG | + | chr4_2:71904755-71904774 | Msa0620420:intron | 25.0% |
| ! | AGAAGAACACAAAAAGATTA+AGG | - | chr4_2:71905310-71905329 | None:intergenic | 25.0% |
| !!! | TTGTTTTTTAATCTGTTTGG+GGG | + | chr4_2:71905366-71905385 | Msa0620420:intron | 25.0% |
| ! | TGTTCAACATTGATATGATA+CGG | + | chr4_2:71905853-71905872 | Msa0620420:CDS | 25.0% |
| ! | ATTGATATCAATTACTTTCC+AGG | + | chr4_2:71905906-71905925 | Msa0620420:CDS | 25.0% |
| ! | ATAAATATGTGTTCATACTC+TGG | - | chr4_2:71906113-71906132 | None:intergenic | 25.0% |
| ! | AATCAGTAACATGTTAATTC+CGG | + | chr4_2:71906254-71906273 | Msa0620420:three_prime_UTR | 25.0% |
| ! | TCCGGAAAGAAAAAAAAAAT+TGG | + | chr4_2:71906272-71906291 | Msa0620420:three_prime_UTR | 25.0% |
| ! | CTCTTGAAAATGTGTTAAAT+GGG | + | chr4_2:71906310-71906329 | Msa0620420:three_prime_UTR | 25.0% |
| ! | GAAATGGATTTGATGTTGTT+GGG | - | chr4_2:71902755-71902774 | None:intergenic | 30.0% |
| ! | TGAAATGGATTTGATGTTGT+TGG | - | chr4_2:71902756-71902775 | None:intergenic | 30.0% |
| ! | TGAGATTTTGTTCTTTGTAG+AGG | - | chr4_2:71902784-71902803 | None:intergenic | 30.0% |
| GATCGTTTCCGTAAAAAAAA+CGG | + | chr4_2:71902842-71902861 | Msa0620420:CDS | 30.0% | |
| !!! | CATAGATGCCGTTTTTTTTA+CGG | - | chr4_2:71902853-71902872 | None:intergenic | 30.0% |
| TCAAACTTAATTCACAGCAT+TGG | - | chr4_2:71903130-71903149 | None:intergenic | 30.0% | |
| GCTGTGAATTAAGTTTGAAA+CGG | + | chr4_2:71903132-71903151 | Msa0620420:intron | 30.0% | |
| GATTAATAATCCTCAGTTGT+TGG | - | chr4_2:71903291-71903310 | None:intergenic | 30.0% | |
| TAAATAACATCAATAGGCTG+TGG | + | chr4_2:71903311-71903330 | Msa0620420:intron | 30.0% | |
| AGTCTTCTCTAATAAGTCTA+AGG | - | chr4_2:71903368-71903387 | None:intergenic | 30.0% | |
| GAAATATCAACCTATGGAAT+CGG | - | chr4_2:71903406-71903425 | None:intergenic | 30.0% | |
| AGCATAAAGGAAAGAAAATC+AGG | + | chr4_2:71903482-71903501 | Msa0620420:intron | 30.0% | |
| !!! | AACACTGCGTCATATTTTTT+TGG | - | chr4_2:71903660-71903679 | None:intergenic | 30.0% |
| GACAACTGTAATATTGACAA+TGG | + | chr4_2:71903844-71903863 | Msa0620420:intron | 30.0% | |
| AATATTGACAATGGCAAACT+TGG | + | chr4_2:71903853-71903872 | Msa0620420:intron | 30.0% | |
| TGTTCTCAATATTGAGACAA+TGG | - | chr4_2:71903880-71903899 | None:intergenic | 30.0% | |
| TATAATGAAATCAGCCTGAA+AGG | + | chr4_2:71904229-71904248 | Msa0620420:intron | 30.0% | |
| CTCTAATATTTGTTCCTTTC+AGG | - | chr4_2:71904246-71904265 | None:intergenic | 30.0% | |
| !!! | TTATTTTTTTGGCTCGTGAA+AGG | - | chr4_2:71904359-71904378 | None:intergenic | 30.0% |
| ! | TAGTCTGTGAATTTTGCATT+TGG | + | chr4_2:71904483-71904502 | Msa0620420:intron | 30.0% |
| ! | TGTGAATTTTGCATTTGGAT+GGG | + | chr4_2:71904488-71904507 | Msa0620420:intron | 30.0% |
| AAGTTTGTAGGTAAAATTGC+TGG | - | chr4_2:71904515-71904534 | None:intergenic | 30.0% | |
| ACATAAACAGACAAGTTTGT+AGG | - | chr4_2:71904527-71904546 | None:intergenic | 30.0% | |
| ACTTGTCTGTTTATGTTTGA+AGG | + | chr4_2:71904531-71904550 | Msa0620420:CDS | 30.0% | |
| GTTTATGTTTGAAGGATTAC+AGG | + | chr4_2:71904539-71904558 | Msa0620420:CDS | 30.0% | |
| TAGAGGAATAGATCTGATAT+CGG | + | chr4_2:71904909-71904928 | Msa0620420:intron | 30.0% | |
| AAATGCACTCAGATGATATA+TGG | - | chr4_2:71904951-71904970 | None:intergenic | 30.0% | |
| ! | GCTATAATCGTCAATTTTCA+TGG | + | chr4_2:71905043-71905062 | Msa0620420:intron | 30.0% |
| TATTGTTGGCGAAACTATAA+AGG | + | chr4_2:71905431-71905450 | Msa0620420:CDS | 30.0% | |
| ! | TGATTTGGATCCAAATATTG+CGG | + | chr4_2:71905563-71905582 | Msa0620420:CDS | 30.0% |
| !! | AAGTAGTCTTCATTTTTGTC+TGG | - | chr4_2:71905629-71905648 | None:intergenic | 30.0% |
| ! | ATAATGTCTGTCTTGATTTG+AGG | - | chr4_2:71905791-71905810 | None:intergenic | 30.0% |
| TCATATCAATGTTGAACAAG+TGG | - | chr4_2:71905851-71905870 | None:intergenic | 30.0% | |
| GTTCAACATTGATATGATAC+GGG | + | chr4_2:71905854-71905873 | Msa0620420:CDS | 30.0% | |
| ATAAAGCTGTTCAACCAATT+TGG | - | chr4_2:71906060-71906079 | None:intergenic | 30.0% | |
| TCTTACACTTATTCTTCACA+AGG | - | chr4_2:71906151-71906170 | None:intergenic | 30.0% | |
| GAAGAATAAGTGTAAGAAGA+AGG | + | chr4_2:71906154-71906173 | Msa0620420:CDS | 30.0% | |
| AATAAGTGTAAGAAGAAGGA+TGG | + | chr4_2:71906158-71906177 | Msa0620420:CDS | 30.0% | |
| !! | CCATTTAACACATTTTCAAG+AGG | - | chr4_2:71906312-71906331 | None:intergenic | 30.0% |
| CCTCTTGAAAATGTGTTAAA+TGG | + | chr4_2:71906309-71906328 | Msa0620420:three_prime_UTR | 30.0% | |
| TAACTTACAAGTTGCAACAA+AGG | - | chr4_2:71906391-71906410 | None:intergenic | 30.0% | |
| ! | GTTGGGTGATTTTTCTGTTA+CGG | - | chr4_2:71902738-71902757 | None:intergenic | 35.0% |
| ! | TTTGTAGAGGTCTTGTGAAA+TGG | - | chr4_2:71902771-71902790 | None:intergenic | 35.0% |
| ! | GTGAATTAAGTTTGAAACGG+TGG | + | chr4_2:71903135-71903154 | Msa0620420:intron | 35.0% |
| TTCAAGTATTCCAACAACTG+AGG | + | chr4_2:71903278-71903297 | Msa0620420:intron | 35.0% | |
| TTCAGGGAAATATCAACCTA+TGG | - | chr4_2:71903412-71903431 | None:intergenic | 35.0% | |
| ! | GGTTGATATTTCCCTGAATT+AGG | + | chr4_2:71903414-71903433 | Msa0620420:intron | 35.0% |
| AGTCAGATAGTCCTAATTCA+GGG | - | chr4_2:71903428-71903447 | None:intergenic | 35.0% | |
| AAGTCAGATAGTCCTAATTC+AGG | - | chr4_2:71903429-71903448 | None:intergenic | 35.0% | |
| TGAATTAGGACTATCTGACT+TGG | + | chr4_2:71903428-71903447 | Msa0620420:intron | 35.0% | |
| GAAGTATAAGCACAGCATAA+AGG | + | chr4_2:71903469-71903488 | Msa0620420:intron | 35.0% | |
| !! | GACGCAGTGTTTTTAAATAG+CGG | + | chr4_2:71903669-71903688 | Msa0620420:intron | 35.0% |
| TGCTTACATAGATCTACGAT+GGG | - | chr4_2:71904046-71904065 | None:intergenic | 35.0% | |
| AGGGCTGTTCAAATATAGAA+CGG | + | chr4_2:71904121-71904140 | Msa0620420:intron | 35.0% | |
| ACCAAGTTTCTTGAAGTACA+TGG | + | chr4_2:71904154-71904173 | Msa0620420:intron | 35.0% | |
| AGATTACAGCTTTGCCATAT+TGG | + | chr4_2:71904403-71904422 | Msa0620420:intron | 35.0% | |
| ! | CTGTGAATTTTGCATTTGGA+TGG | + | chr4_2:71904487-71904506 | Msa0620420:intron | 35.0% |
| ! | GTGAATTTTGCATTTGGATG+GGG | + | chr4_2:71904489-71904508 | Msa0620420:intron | 35.0% |
| ACAATCGATGCTACAAAATG+TGG | + | chr4_2:71904624-71904643 | Msa0620420:CDS | 35.0% | |
| TTAGTGATAACCAACTGTTG+TGG | - | chr4_2:71904785-71904804 | None:intergenic | 35.0% | |
| TCTAGTGAAAGTAAGGATCT+CGG | - | chr4_2:71904893-71904912 | None:intergenic | 35.0% | |
| CTATTCCTCTAGTGAAAGTA+AGG | - | chr4_2:71904900-71904919 | None:intergenic | 35.0% | |
| ATATAGTAGCATCTCTCTTG+TGG | + | chr4_2:71905096-71905115 | Msa0620420:intron | 35.0% | |
| AGTTGCAAAACCATTAGTTG+TGG | + | chr4_2:71905164-71905183 | Msa0620420:intron | 35.0% | |
| CAAAACCATTAGTTGTGGAT+GGG | + | chr4_2:71905169-71905188 | Msa0620420:CDS | 35.0% | |
| ACAAACTCTTGAAGAACAAG+TGG | - | chr4_2:71905258-71905277 | None:intergenic | 35.0% | |
| CTTCAAGAGTTTGTCAATCA+TGG | + | chr4_2:71905264-71905283 | Msa0620420:CDS | 35.0% | |
| !!! | TTTTTTAATCTGTTTGGGGG+AGG | + | chr4_2:71905369-71905388 | Msa0620420:intron | 35.0% |
| AATTCATGTTTGCCGACATT+AGG | - | chr4_2:71905477-71905496 | None:intergenic | 35.0% | |
| CACATGAAACTCTTGGAAAT+CGG | - | chr4_2:71905521-71905540 | None:intergenic | 35.0% | |
| GATTTGGATCCAAATATTGC+GGG | + | chr4_2:71905564-71905583 | Msa0620420:CDS | 35.0% | |
| ACATCCACCAAAACCTTTAT+TGG | + | chr4_2:71905705-71905724 | Msa0620420:CDS | 35.0% | |
| TTATATTCCATCACACCTCT+AGG | + | chr4_2:71905821-71905840 | Msa0620420:intron | 35.0% | |
| TATATTCCATCACACCTCTA+GGG | + | chr4_2:71905822-71905841 | Msa0620420:intron | 35.0% | |
| ATTGATATGATACGGGAACA+TGG | + | chr4_2:71905861-71905880 | Msa0620420:CDS | 35.0% | |
| TTGATATGATACGGGAACAT+GGG | + | chr4_2:71905862-71905881 | Msa0620420:CDS | 35.0% | |
| ACATACGCAATGCTCATAAA+TGG | - | chr4_2:71906021-71906040 | None:intergenic | 35.0% | |
| TTTATCTTTAACCCTCTGCA+GGG | + | chr4_2:71906075-71906094 | Msa0620420:intron | 35.0% | |
| TATTCTTCACAAGGCTAAGT+AGG | - | chr4_2:71906142-71906161 | None:intergenic | 35.0% | |
| ! | TCCATTCAGCATTTTATCCT+TGG | + | chr4_2:71906211-71906230 | Msa0620420:three_prime_UTR | 35.0% |
| ! | ATGTGTTAAATGGGTTCTCA+AGG | + | chr4_2:71906319-71906338 | Msa0620420:three_prime_UTR | 35.0% |
| !!! | CAAAGGCATTTTGATCAGTT+GGG | - | chr4_2:71906374-71906393 | None:intergenic | 35.0% |
| !!! | ACAAAGGCATTTTGATCAGT+TGG | - | chr4_2:71906375-71906394 | None:intergenic | 35.0% |
| TCTGATGCTCGATAATGTCA+CGG | - | chr4_2:71902922-71902941 | None:intergenic | 40.0% | |
| ! | AAGTTTGAAACGGTGGTGAA+TGG | + | chr4_2:71903142-71903161 | Msa0620420:intron | 40.0% |
| CCGATCATGATTCATGATGA+GGG | - | chr4_2:71903241-71903260 | None:intergenic | 40.0% | |
| CCCTCATCATGAATCATGAT+CGG | + | chr4_2:71903238-71903257 | Msa0620420:intron | 40.0% | |
| TCCGATCATGATTCATGATG+AGG | - | chr4_2:71903242-71903261 | None:intergenic | 40.0% | |
| GAGACATTCTTGATCTCATC+AGG | + | chr4_2:71903520-71903539 | Msa0620420:intron | 40.0% | |
| CTGCTTACATAGATCTACGA+TGG | - | chr4_2:71904047-71904066 | None:intergenic | 40.0% | |
| CCAGTTGAAGTTTCTGTTGT+GGG | - | chr4_2:71904095-71904114 | None:intergenic | 40.0% | |
| ACCAGTTGAAGTTTCTGTTG+TGG | - | chr4_2:71904096-71904115 | None:intergenic | 40.0% | |
| GTTCTATATTTGAACAGCCC+TGG | - | chr4_2:71904122-71904141 | None:intergenic | 40.0% | |
| GCCATGTACTTCAAGAAACT+TGG | - | chr4_2:71904158-71904177 | None:intergenic | 40.0% | |
| TGGCAAAGCTGTAATCTCAA+AGG | - | chr4_2:71904400-71904419 | None:intergenic | 40.0% | |
| TACAGCTTTGCCATATTGGA+TGG | + | chr4_2:71904407-71904426 | Msa0620420:intron | 40.0% | |
| ACAGCTTTGCCATATTGGAT+GGG | + | chr4_2:71904408-71904427 | Msa0620420:intron | 40.0% | |
| CTAAACTTATCTGACTGCCA+TGG | + | chr4_2:71904652-71904671 | Msa0620420:CDS | 40.0% | |
| TATCCCCTATGAAGTCACTA+AGG | + | chr4_2:71904823-71904842 | Msa0620420:CDS | 40.0% | |
| GAGATCCTTACTTTCACTAG+AGG | + | chr4_2:71904892-71904911 | Msa0620420:intron | 40.0% | |
| GCAAAACCATTAGTTGTGGA+TGG | + | chr4_2:71905168-71905187 | Msa0620420:CDS | 40.0% | |
| AACTCTTGAAGAACAAGTGG+TGG | - | chr4_2:71905255-71905274 | None:intergenic | 40.0% | |
| GCGAAACTATAAAGGTTGTG+AGG | + | chr4_2:71905439-71905458 | Msa0620420:CDS | 40.0% | |
| CGTTTCTCTCTACCTAATGT+CGG | + | chr4_2:71905462-71905481 | Msa0620420:CDS | 40.0% | |
| TTCTGCAGATGAAGCTGATT+TGG | + | chr4_2:71905548-71905567 | Msa0620420:CDS | 40.0% | |
| TGTAACAACAGTGTCACAGT+AGG | - | chr4_2:71905683-71905702 | None:intergenic | 40.0% | |
| !! | CTCTCCAATAAAGGTTTTGG+TGG | - | chr4_2:71905712-71905731 | None:intergenic | 40.0% |
| CACCAAAACCTTTATTGGAG+AGG | + | chr4_2:71905710-71905729 | Msa0620420:CDS | 40.0% | |
| ! | AGCCTCTCCAATAAAGGTTT+TGG | - | chr4_2:71905715-71905734 | None:intergenic | 40.0% |
| TTTATTGGAGAGGCTTGCAA+GGG | + | chr4_2:71905720-71905739 | Msa0620420:CDS | 40.0% | |
| TGACATAAGTTGTACTTGCC+TGG | - | chr4_2:71905927-71905946 | None:intergenic | 40.0% | |
| AATTTGCCGTTGTGCCAAAT+TGG | + | chr4_2:71906043-71906062 | Msa0620420:intron | 40.0% | |
| GTTCAACCAATTTGGCACAA+CGG | - | chr4_2:71906052-71906071 | None:intergenic | 40.0% | |
| CTTTATCTTTAACCCTCTGC+AGG | + | chr4_2:71906074-71906093 | Msa0620420:intron | 40.0% | |
| ! | ATTTTTCCATACCCTGCAGA+GGG | - | chr4_2:71906089-71906108 | None:intergenic | 40.0% |
| GCCAAGGATAAAATGCTGAA+TGG | - | chr4_2:71906215-71906234 | None:intergenic | 40.0% | |
| ! | TTTTATCCTTGGCTTAGCAG+TGG | + | chr4_2:71906222-71906241 | Msa0620420:three_prime_UTR | 40.0% |
| AGTTGGGAGTGAGTTAGAAA+GGG | - | chr4_2:71906358-71906377 | None:intergenic | 40.0% | |
| ! | GGCTGGATAATCTAGTTTGC+TGG | + | chr4_2:71903163-71903182 | Msa0620420:intron | 45.0% |
| GTTTCTGTTGTGGGACAAAG+AGG | - | chr4_2:71904086-71904105 | None:intergenic | 45.0% | |
| CCCACAACAGAAACTTCAAC+TGG | + | chr4_2:71904092-71904111 | Msa0620420:intron | 45.0% | |
| AAACTTCAACTGGTACGCCA+GGG | + | chr4_2:71904102-71904121 | Msa0620420:intron | 45.0% | |
| CAGCTTTGCCATATTGGATG+GGG | + | chr4_2:71904409-71904428 | Msa0620420:intron | 45.0% | |
| AGGGTCAAGGATGGTTACTT+CGG | - | chr4_2:71904575-71904594 | None:intergenic | 45.0% | |
| ! | AGTGCTGAATTGCATCTGGA+GGG | - | chr4_2:71904594-71904613 | None:intergenic | 45.0% |
| !! | AAGTGCTGAATTGCATCTGG+AGG | - | chr4_2:71904595-71904614 | None:intergenic | 45.0% |
| !! | AGCAAGTGCTGAATTGCATC+TGG | - | chr4_2:71904598-71904617 | None:intergenic | 45.0% |
| CAGCCTTAGTGACTTCATAG+GGG | - | chr4_2:71904829-71904848 | None:intergenic | 45.0% | |
| CCAGCCTTAGTGACTTCATA+GGG | - | chr4_2:71904830-71904849 | None:intergenic | 45.0% | |
| TCCAGCCTTAGTGACTTCAT+AGG | - | chr4_2:71904831-71904850 | None:intergenic | 45.0% | |
| GCTGGAATGAAGTTACCGTT+AGG | + | chr4_2:71904845-71904864 | Msa0620420:CDS | 45.0% | |
| TTTAATCTGTTTGGGGGAGG+TGG | + | chr4_2:71905372-71905391 | Msa0620420:intron | 45.0% | |
| TTAATCTGTTTGGGGGAGGT+GGG | + | chr4_2:71905373-71905392 | Msa0620420:intron | 45.0% | |
| TGTCGGCAAACATGAATTGC+TGG | + | chr4_2:71905479-71905498 | Msa0620420:CDS | 45.0% | |
| GTCGGCAAACATGAATTGCT+GGG | + | chr4_2:71905480-71905499 | Msa0620420:CDS | 45.0% | |
| !! | CATGAATTGCTGGGTGTTGA+TGG | + | chr4_2:71905489-71905508 | Msa0620420:CDS | 45.0% |
| CAAGCTTCACCCGCAATATT+TGG | - | chr4_2:71905576-71905595 | None:intergenic | 45.0% | |
| CTTGCAAGCCTCTCCAATAA+AGG | - | chr4_2:71905721-71905740 | None:intergenic | 45.0% | |
| CTTTATTGGAGAGGCTTGCA+AGG | + | chr4_2:71905719-71905738 | Msa0620420:CDS | 45.0% | |
| GTAAGCATACCAGTCTACGA+CGG | - | chr4_2:71905750-71905769 | None:intergenic | 45.0% | |
| ! | CATTTTTCCATACCCTGCAG+AGG | - | chr4_2:71906090-71906109 | None:intergenic | 45.0% |
| AAGAAACCACTGCTAAGCCA+AGG | - | chr4_2:71906231-71906250 | None:intergenic | 45.0% | |
| CAGTTGGGAGTGAGTTAGAA+AGG | - | chr4_2:71906359-71906378 | None:intergenic | 45.0% | |
| TTGAAACGGTGGTGAATGGC+TGG | + | chr4_2:71903146-71903165 | Msa0620420:intron | 50.0% | |
| !! | AGCAATGCTGCCGATTCCAT+AGG | + | chr4_2:71903393-71903412 | Msa0620420:intron | 50.0% |
| TCGTGAATCGCAGAAAGTGG+TGG | - | chr4_2:71903805-71903824 | None:intergenic | 50.0% | |
| CAGTCGTGAATCGCAGAAAG+TGG | - | chr4_2:71903808-71903827 | None:intergenic | 50.0% | |
| GAACACTGGACAGCTTATGG+AGG | - | chr4_2:71904000-71904019 | None:intergenic | 50.0% | |
| TGTCCAGTGTTCGCCATGAT+GGG | + | chr4_2:71904008-71904027 | Msa0620420:intron | 50.0% | |
| GAAACTTCAACTGGTACGCC+AGG | + | chr4_2:71904101-71904120 | Msa0620420:intron | 50.0% | |
| TTTGCCATATTGGATGGGGC+TGG | + | chr4_2:71904413-71904432 | Msa0620420:intron | 50.0% | |
| ATCACCAGCCCCATCCAATA+TGG | - | chr4_2:71904420-71904439 | None:intergenic | 50.0% | |
| GGGTCAAGGATGGTTACTTC+GGG | - | chr4_2:71904574-71904593 | None:intergenic | 50.0% | |
| GAATTGCATCTGGAGGGTCA+AGG | - | chr4_2:71904588-71904607 | None:intergenic | 50.0% | |
| ! | GGTTGGTGTTCCACAACAGT+TGG | + | chr4_2:71904772-71904791 | Msa0620420:CDS | 50.0% |
| CCCTATGAAGTCACTAAGGC+TGG | + | chr4_2:71904827-71904846 | Msa0620420:CDS | 50.0% | |
| GCACTCCCATCCACAACTAA+TGG | - | chr4_2:71905177-71905196 | None:intergenic | 50.0% | |
| TAATCTGTTTGGGGGAGGTG+GGG | + | chr4_2:71905374-71905393 | Msa0620420:intron | 50.0% | |
| GCTGCTGCACATGAAACTCT+TGG | - | chr4_2:71905528-71905547 | None:intergenic | 50.0% | |
| TGAACAAGTGGAGTCCCTAG+AGG | - | chr4_2:71905839-71905858 | None:intergenic | 50.0% | |
| GATACGGGAACATGGGACAA+AGG | + | chr4_2:71905869-71905888 | Msa0620420:CDS | 50.0% | |
| CTTTAACCCTCTGCAGGGTA+TGG | + | chr4_2:71906080-71906099 | Msa0620420:intron | 50.0% | |
| CGATAATGTCACGGACCCAC+CGG | - | chr4_2:71902913-71902932 | None:intergenic | 55.0% | |
| AGCTTATGGAGGCAGGACTG+CGG | - | chr4_2:71903989-71904008 | None:intergenic | 55.0% | |
| ACTGGACAGCTTATGGAGGC+AGG | - | chr4_2:71903996-71904015 | None:intergenic | 55.0% | |
| GGCGAACACTGGACAGCTTA+TGG | - | chr4_2:71904003-71904022 | None:intergenic | 55.0% | |
| CTGTCCAGTGTTCGCCATGA+TGG | + | chr4_2:71904007-71904026 | Msa0620420:intron | 55.0% | |
| GTCCAGTGTTCGCCATGATG+GGG | + | chr4_2:71904009-71904028 | Msa0620420:intron | 55.0% | |
| TCCAGTGTTCGCCATGATGG+GGG | + | chr4_2:71904010-71904029 | Msa0620420:intron | 55.0% | |
| TGCATCTGGAGGGTCAAGGA+TGG | - | chr4_2:71904584-71904603 | None:intergenic | 55.0% | |
| AGCATACCAGTCTACGACGG+AGG | - | chr4_2:71905747-71905766 | None:intergenic | 55.0% | |
| ! | TGGAGTCCCTAGAGGTGTGA+TGG | - | chr4_2:71905831-71905850 | None:intergenic | 55.0% |
| TCGCCGGAGCTAAACGCTTC+CGG | + | chr4_2:71902891-71902910 | Msa0620420:CDS | 60.0% | |
| !! | CCACCGGAAGCGTTTAGCTC+CGG | - | chr4_2:71902897-71902916 | None:intergenic | 60.0% |
| CGGAGCTAAACGCTTCCGGT+GGG | + | chr4_2:71902895-71902914 | Msa0620420:intron | 60.0% | |
| GCTTATGGAGGCAGGACTGC+GGG | - | chr4_2:71903988-71904007 | None:intergenic | 60.0% | |
| ACCCCCATCATGGCGAACAC+TGG | - | chr4_2:71904014-71904033 | None:intergenic | 60.0% | |
| ! | AGTGTTCGCCATGATGGGGG+TGG | + | chr4_2:71904013-71904032 | Msa0620420:intron | 60.0% |
| ! | GTGTTCGCCATGATGGGGGT+GGG | + | chr4_2:71904014-71904033 | Msa0620420:intron | 60.0% |
| ! | TGTTCGCCATGATGGGGGTG+GGG | + | chr4_2:71904015-71904034 | Msa0620420:intron | 60.0% |
| AAGGGACCTCCGTCGTAGAC+TGG | + | chr4_2:71905738-71905757 | Msa0620420:CDS | 60.0% | |
| ! | AGCGTTTAGCTCCGGCGAGG+CGG | - | chr4_2:71902889-71902908 | None:intergenic | 65.0% |
| !! | GGAAGCGTTTAGCTCCGGCG+AGG | - | chr4_2:71902892-71902911 | None:intergenic | 65.0% |
| CCGGAGCTAAACGCTTCCGG+TGG | + | chr4_2:71902894-71902913 | Msa0620420:intron | 65.0% | |
| GGAGGTGGGGTTTGCACTGC+AGG | + | chr4_2:71905387-71905406 | Msa0620420:intron | 65.0% | |
| GGTGGGGTTTGCACTGCAGG+TGG | + | chr4_2:71905390-71905409 | Msa0620420:intron | 65.0% | |
| ! | GTTTAGCTCCGGCGAGGCGG+CGG | - | chr4_2:71902886-71902905 | None:intergenic | 70.0% |
| ! | CGCCATGATGGGGGTGGGGT+CGG | + | chr4_2:71904019-71904038 | Msa0620420:intron | 70.0% |
| GTCCGACCCCACCCCCATCA+TGG | - | chr4_2:71904024-71904043 | None:intergenic | 70.0% | |
| ! | GACACCGTCCGCCGCCTCGC+CGG | + | chr4_2:71902875-71902894 | Msa0620420:CDS | 80.0% |
| ! | AGCTCCGGCGAGGCGGCGGA+CGG | - | chr4_2:71902882-71902901 | None:intergenic | 80.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_2 | gene | 71902704 | 71906454 | 71902704 | ID=Msa0620420;Name=Msa0620420 |
| chr4_2 | mRNA | 71902704 | 71906454 | 71902704 | ID=Msa0620420-mRNA-1;Parent=Msa0620420;Name=Msa0620420-mRNA-1;_AED=0.23;_eAED=0.24;_QI=0|0.71|0.62|0.87|0.85|0.75|8|267|354 |
| chr4_2 | exon | 71902704 | 71902912 | 71902704 | ID=Msa0620420-mRNA-1:exon:21286;Parent=Msa0620420-mRNA-1 |
| chr4_2 | exon | 71904516 | 71904673 | 71904516 | ID=Msa0620420-mRNA-1:exon:21287;Parent=Msa0620420-mRNA-1 |
| chr4_2 | exon | 71904768 | 71904866 | 71904768 | ID=Msa0620420-mRNA-1:exon:21288;Parent=Msa0620420-mRNA-1 |
| chr4_2 | exon | 71905166 | 71905285 | 71905166 | ID=Msa0620420-mRNA-1:exon:21289;Parent=Msa0620420-mRNA-1 |
| chr4_2 | exon | 71905409 | 71905585 | 71905409 | ID=Msa0620420-mRNA-1:exon:21290;Parent=Msa0620420-mRNA-1 |
| chr4_2 | exon | 71905704 | 71905759 | 71905704 | ID=Msa0620420-mRNA-1:exon:21291;Parent=Msa0620420-mRNA-1 |
| chr4_2 | exon | 71905843 | 71905996 | 71905843 | ID=Msa0620420-mRNA-1:exon:21292;Parent=Msa0620420-mRNA-1 |
| chr4_2 | exon | 71906096 | 71906454 | 71906096 | ID=Msa0620420-mRNA-1:exon:21293;Parent=Msa0620420-mRNA-1 |
| chr4_2 | CDS | 71902704 | 71902912 | 71902704 | ID=Msa0620420-mRNA-1:cds;Parent=Msa0620420-mRNA-1 |
| chr4_2 | CDS | 71904516 | 71904673 | 71904516 | ID=Msa0620420-mRNA-1:cds;Parent=Msa0620420-mRNA-1 |
| chr4_2 | CDS | 71904768 | 71904866 | 71904768 | ID=Msa0620420-mRNA-1:cds;Parent=Msa0620420-mRNA-1 |
| chr4_2 | CDS | 71905166 | 71905285 | 71905166 | ID=Msa0620420-mRNA-1:cds;Parent=Msa0620420-mRNA-1 |
| chr4_2 | CDS | 71905409 | 71905585 | 71905409 | ID=Msa0620420-mRNA-1:cds;Parent=Msa0620420-mRNA-1 |
| chr4_2 | CDS | 71905704 | 71905759 | 71905704 | ID=Msa0620420-mRNA-1:cds;Parent=Msa0620420-mRNA-1 |
| chr4_2 | CDS | 71905843 | 71905996 | 71905843 | ID=Msa0620420-mRNA-1:cds;Parent=Msa0620420-mRNA-1 |
| chr4_2 | CDS | 71906096 | 71906187 | 71906096 | ID=Msa0620420-mRNA-1:cds;Parent=Msa0620420-mRNA-1 |
| chr4_2 | three_prime_UTR | 71906188 | 71906454 | 71906188 | ID=Msa0620420-mRNA-1:three_prime_utr;Parent=Msa0620420-mRNA-1 |
| Gene Sequence |
| Protein sequence |
