Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712020 | XP_003610965.1 | 98.790 | 496 | 6 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1009 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712020 | sp|Q9LPS1|HXK3_ARATH | 72.034 | 472 | 129 | 3 | 25 | 494 | 25 | 495 | 0.0 | 702 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712020 | G7K998 | 98.790 | 496 | 6 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1009 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0630940 | Msa0712020 | 0.826224 | 3.050658e-54 | -8.615850e-47 |
| Msa0669180 | Msa0712020 | 0.814968 | 1.175634e-51 | -8.615850e-47 |
| Msa0712020 | Msa0750000 | 0.913240 | 7.740554e-84 | -8.615850e-47 |
| Msa0712020 | Msa0750250 | 0.825086 | 5.677847e-54 | -8.615850e-47 |
| Msa0712020 | Msa0794840 | 0.844912 | 5.635230e-59 | -8.615850e-47 |
| Msa0712020 | Msa1390250 | 0.806185 | 9.300448e-50 | -8.615850e-47 |
| Msa0138090 | Msa0712020 | 0.821710 | 3.493536e-53 | -8.615850e-47 |
| Msa0156220 | Msa0712020 | 0.849072 | 4.089217e-60 | -8.615850e-47 |
| Msa0229940 | Msa0712020 | 0.823031 | 1.723713e-53 | -8.615850e-47 |
| Msa0467570 | Msa0712020 | 0.802918 | 4.466828e-49 | -8.615850e-47 |
| Msa0527130 | Msa0712020 | 0.808414 | 3.134489e-50 | -8.615850e-47 |
| Msa0590640 | Msa0712020 | 0.814332 | 1.625933e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712020 | MtrunA17_Chr5g0396421 | 98.790 | 496 | 6 | 0 | 1 | 496 | 1 | 496 | 0.0 | 1009 |
| Msa0712020 | MtrunA17_Chr8g0389821 | 57.173 | 474 | 191 | 5 | 26 | 496 | 26 | 490 | 0.0 | 542 |
| Msa0712020 | MtrunA17_Chr8g0340741 | 55.912 | 499 | 207 | 5 | 1 | 496 | 1 | 489 | 0.0 | 523 |
| Msa0712020 | MtrunA17_Chr6g0487071 | 52.778 | 468 | 209 | 3 | 32 | 496 | 30 | 488 | 2.16e-175 | 502 |
| Msa0712020 | MtrunA17_Chr1g0156571 | 49.582 | 478 | 223 | 6 | 26 | 496 | 24 | 490 | 2.74e-151 | 441 |
| Msa0712020 | MtrunA17_Chr4g0054541 | 49.045 | 157 | 77 | 2 | 226 | 381 | 5 | 159 | 4.87e-42 | 147 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0712020 | AT1G50460.1 | 72.034 | 472 | 129 | 3 | 25 | 494 | 25 | 495 | 0.0 | 702 |
| Msa0712020 | AT3G20040.1 | 67.137 | 496 | 157 | 3 | 1 | 494 | 1 | 492 | 0.0 | 632 |
| Msa0712020 | AT1G50460.3 | 71.040 | 404 | 114 | 3 | 93 | 494 | 17 | 419 | 0.0 | 590 |
| Msa0712020 | AT4G29130.1 | 56.112 | 499 | 207 | 3 | 1 | 496 | 1 | 490 | 0.0 | 543 |
| Msa0712020 | AT2G19860.1 | 56.112 | 499 | 207 | 3 | 1 | 496 | 1 | 490 | 0.0 | 540 |
| Msa0712020 | AT1G50460.2 | 73.636 | 330 | 86 | 1 | 25 | 353 | 25 | 354 | 1.33e-179 | 508 |
| Msa0712020 | AT1G47840.1 | 49.677 | 465 | 210 | 7 | 40 | 496 | 43 | 491 | 2.26e-145 | 426 |
| Msa0712020 | AT2G19860.2 | 53.470 | 389 | 169 | 3 | 111 | 496 | 2 | 381 | 2.33e-139 | 407 |
| Msa0712020 | AT1G47840.2 | 52.201 | 318 | 146 | 4 | 40 | 353 | 43 | 358 | 3.00e-104 | 317 |
| Msa0712020 | AT4G37840.1 | 39.331 | 478 | 267 | 7 | 22 | 493 | 22 | 482 | 1.00e-99 | 309 |
| Msa0712020 | AT1G47845.1 | 46.528 | 144 | 73 | 3 | 277 | 418 | 40 | 181 | 1.81e-34 | 128 |
Find 155 sgRNAs with CRISPR-Local
Find 351 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TGAAGCTTTAAACGAAATAT+TGG | 0.248960 | 5_1:+3874608 | Msa0712020:CDS |
| CTAACCTGATCATTTGGATT+AGG | 0.252444 | 5_1:-3873145 | None:intergenic |
| CATATTATGCGCTGCATCTT+GGG | 0.273264 | 5_1:+3871680 | Msa0712020:CDS |
| GAAGCTTTAAACGAAATATT+GGG | 0.286275 | 5_1:+3874609 | Msa0712020:CDS |
| TAACCTGATCATTTGGATTA+GGG | 0.298457 | 5_1:-3873144 | None:intergenic |
| TCAATGTCATACTGTGTTCT+TGG | 0.301091 | 5_1:-3873106 | None:intergenic |
| TCATTTCAGGACTCCTTTGA+TGG | 0.304467 | 5_1:+3874187 | Msa0712020:intron |
| AAGAACGAATTCTGATTTAC+AGG | 0.312930 | 5_1:-3874799 | None:intergenic |
| CTTGCCTTCAATGGAAGATC+TGG | 0.322162 | 5_1:-3874372 | None:intergenic |
| GAAACAGACATTTGTTTCAT+AGG | 0.324581 | 5_1:-3872025 | None:intergenic |
| CCATATTATGCGCTGCATCT+TGG | 0.333001 | 5_1:+3871679 | Msa0712020:CDS |
| CCAAGATGCAGCGCATAATA+TGG | 0.343745 | 5_1:-3871679 | None:intergenic |
| ATAAGTTGTAAGAGATCCTT+TGG | 0.344990 | 5_1:+3874937 | Msa0712020:three_prime_UTR |
| CAGGAAGCATTTGCACGAAA+TGG | 0.346216 | 5_1:+3872285 | Msa0712020:CDS |
| GGTGGCGGCGTGTGCGGTGG+CGG | 0.355755 | 5_1:+3870180 | Msa0712020:CDS |
| TTAACAAACTCCGGTGAAAC+GGG | 0.357615 | 5_1:-3869963 | None:intergenic |
| AGATGTTGCAGCATGTTTGC+AGG | 0.362698 | 5_1:+3872266 | Msa0712020:CDS |
| GTTGTAAATGCAATAGTATT+AGG | 0.370977 | 5_1:+3874960 | Msa0712020:three_prime_UTR |
| CCTTCTGTCCTGTGAAGTAT+TGG | 0.373474 | 5_1:-3871978 | None:intergenic |
| CAGAACCTAACCTGATCATT+TGG | 0.382556 | 5_1:-3873151 | None:intergenic |
| GATTCCAGATCTTCCATTGA+AGG | 0.383594 | 5_1:+3874368 | Msa0712020:intron |
| GTTGGCATCTTGAAGAAGAT+TGG | 0.393117 | 5_1:+3874462 | Msa0712020:CDS |
| GTTGAAAGCTTCGAAGAAAT+AGG | 0.397856 | 5_1:-3873331 | None:intergenic |
| CCGAAGATGGATCAGGCATT+GGG | 0.399324 | 5_1:+3874667 | Msa0712020:CDS |
| ACTATTGCAGCAACAGTGTC+TGG | 0.403276 | 5_1:-3872871 | None:intergenic |
| TTAGCAGCTGCTGGTATTGT+TGG | 0.409433 | 5_1:+3874444 | Msa0712020:CDS |
| ATTCTTAATGTCACCGAAGA+TGG | 0.411432 | 5_1:+3874654 | Msa0712020:CDS |
| GTTTCATCTATTCTTTGATC+AGG | 0.412887 | 5_1:+3874846 | Msa0712020:three_prime_UTR |
| TGATGCTATTATCAAGTGTC+AGG | 0.416448 | 5_1:+3872933 | Msa0712020:CDS |
| TTTAACAAACTCCGGTGAAA+CGG | 0.420451 | 5_1:-3869964 | None:intergenic |
| TTAGGTTGTCAATATGGAAT+GGG | 0.425444 | 5_1:+3873060 | Msa0712020:intron |
| GACGGCGACGGTGGCGGTGG+CGG | 0.428913 | 5_1:+3870165 | Msa0712020:CDS |
| TCACTAGAGTCGGATATGTT+TGG | 0.429372 | 5_1:+3873307 | Msa0712020:CDS |
| AACCCTCAACGACACCTTTG+AGG | 0.435865 | 5_1:+3874256 | Msa0712020:CDS |
| TTAGAAAATAAAGGAAATGT+TGG | 0.445049 | 5_1:-3869848 | None:intergenic |
| GGGAGTGACGGCGACGGTGG+CGG | 0.445488 | 5_1:+3870159 | Msa0712020:CDS |
| CTTGCTACTTCTATCAAGTC+AGG | 0.448747 | 5_1:-3874233 | None:intergenic |
| GGCGGCGTGTGCGGTGGCGG+CGG | 0.449757 | 5_1:+3870183 | Msa0712020:CDS |
| GACGGGAGTGGTGGCATCAC+AGG | 0.450160 | 5_1:+3874489 | Msa0712020:CDS |
| TACCTCAAAGGTGTCGTTGA+GGG | 0.450281 | 5_1:-3874258 | None:intergenic |
| GAAACAAATGTCTGTTTCCT+CGG | 0.450286 | 5_1:+3872030 | Msa0712020:CDS |
| GAGTGAAGAGTAGAAGAAAG+TGG | 0.451502 | 5_1:+3870221 | Msa0712020:CDS |
| GAAGATGGGAAGAGTGGTAG+TGG | 0.452894 | 5_1:+3870138 | Msa0712020:exon |
| TATTTAATATCTCTGTATAG+AGG | 0.455370 | 5_1:+3874824 | Msa0712020:three_prime_UTR |
| TTCTTTCGGTGAGAAATCTT+CGG | 0.455726 | 5_1:+3870070 | Msa0712020:five_prime_UTR |
| ACCACCTTCAGAAGCTAAAC+CGG | 0.457674 | 5_1:-3870344 | None:intergenic |
| TTTAGGTTGTCAATATGGAA+TGG | 0.460418 | 5_1:+3873059 | Msa0712020:intron |
| AAAGAAAGAAGGGGCGGCTC+CGG | 0.461070 | 5_1:-3869872 | None:intergenic |
| TCACAGGACAGAAGGGAACT+TGG | 0.465295 | 5_1:+3871986 | Msa0712020:CDS |
| ATCTTCGGAGAGTGGGAAAA+CGG | 0.465385 | 5_1:+3870085 | Msa0712020:five_prime_UTR |
| GGTGGCGGTGGCGGCGTGTG+CGG | 0.466342 | 5_1:+3870174 | Msa0712020:CDS |
| AGTGACGGCGACGGTGGCGG+TGG | 0.467501 | 5_1:+3870162 | Msa0712020:CDS |
| CCCAATGCCTGATCCATCTT+CGG | 0.469673 | 5_1:-3874667 | None:intergenic |
| GAATTCATTGCTAAAGAAGA+TGG | 0.471311 | 5_1:+3871953 | Msa0712020:CDS |
| GTTTGATCGATCGGTGAAGA+TGG | 0.474834 | 5_1:+3870123 | Msa0712020:exon |
| AAACAGACATTTGTTTCATA+GGG | 0.475582 | 5_1:-3872024 | None:intergenic |
| GGCGGTGGCGGCGTGTGCGG+TGG | 0.477522 | 5_1:+3870177 | Msa0712020:CDS |
| ACCGAAGATGGATCAGGCAT+TGG | 0.478914 | 5_1:+3874666 | Msa0712020:CDS |
| ATACGAGTGTTGGAAGGTTA+AGG | 0.481037 | 5_1:+3870287 | Msa0712020:CDS |
| CTGTTGGAACATTAGCTGTT+GGG | 0.486153 | 5_1:+3872836 | Msa0712020:CDS |
| AACTCCGGTGAAACGGGAAA+CGG | 0.486811 | 5_1:-3869957 | None:intergenic |
| ATCAATTCGCTCCAAGTAGC+AGG | 0.487352 | 5_1:-3872914 | None:intergenic |
| TGGTACTAATGCCTGCTACT+TGG | 0.489030 | 5_1:+3872903 | Msa0712020:CDS |
| AAGCAGGTTAATGATACTGT+TGG | 0.489212 | 5_1:+3872820 | Msa0712020:intron |
| AGGCAGCTACATGCACATCT+AGG | 0.489720 | 5_1:-3872308 | None:intergenic |
| AAGCCCTAATCCAAATGATC+AGG | 0.491358 | 5_1:+3873141 | Msa0712020:CDS |
| TCGCCGGAAAATTAAATCTC+CGG | 0.498514 | 5_1:+3869926 | Msa0712020:five_prime_UTR |
| CAGGGTCTTCTTACAACATC+AGG | 0.499400 | 5_1:+3872952 | Msa0712020:CDS |
| TGAAGAAGATTGGTCGTGAC+GGG | 0.506742 | 5_1:+3874472 | Msa0712020:CDS |
| AGAACAGTTGTGGCAATTGA+AGG | 0.507809 | 5_1:+3874543 | Msa0712020:CDS |
| GGCTCCGGTTTAGAAAATAA+AGG | 0.509378 | 5_1:-3869857 | None:intergenic |
| TTGTTGCGTGCATGATAAAA+CGG | 0.510312 | 5_1:+3870040 | Msa0712020:five_prime_UTR |
| AATGTCACCGAAGATGGATC+AGG | 0.512205 | 5_1:+3874660 | Msa0712020:CDS |
| ACTGTTGCTGCAATAGTCAT+TGG | 0.514702 | 5_1:+3872877 | Msa0712020:CDS |
| GTAACGCGGGTTCATTTAAG+TGG | 0.515646 | 5_1:+3871718 | Msa0712020:CDS |
| TCGTGAGGAGAGTCATTCTC+AGG | 0.519035 | 5_1:+3873281 | Msa0712020:CDS |
| ATATTATGCGCTGCATCTTG+GGG | 0.519770 | 5_1:+3871681 | Msa0712020:CDS |
| AAACAAATGTCTGTTTCCTC+GGG | 0.521874 | 5_1:+3872031 | Msa0712020:CDS |
| AAGGCAAGTGGTTGATGCTA+TGG | 0.522670 | 5_1:+3870306 | Msa0712020:CDS |
| AGATGTGCATGTAGCTGCCT+TGG | 0.522932 | 5_1:+3872311 | Msa0712020:CDS |
| ATGTTGATAATCTTCCTAAC+GGG | 0.524290 | 5_1:+3870392 | Msa0712020:CDS |
| AGACATTTGTTTCATAGGGA+AGG | 0.529304 | 5_1:-3872020 | None:intergenic |
| GTCTGACTTATTTACCTCAA+AGG | 0.532138 | 5_1:-3874270 | None:intergenic |
| TAAGTTGTAAGAGATCCTTT+GGG | 0.536088 | 5_1:+3874938 | Msa0712020:three_prime_UTR |
| CTCTACTTCATGCTCAAGGA+CGG | 0.537992 | 5_1:-3871752 | None:intergenic |
| CCAATACTTCACAGGACAGA+AGG | 0.538946 | 5_1:+3871978 | Msa0712020:CDS |
| CTTGTGCCAGTCATTAGATG+TGG | 0.540300 | 5_1:-3871790 | None:intergenic |
| TTTCTCTCTCTTACTTTCGC+CGG | 0.541736 | 5_1:+3869910 | Msa0712020:five_prime_UTR |
| GCTGCTCGATTAGCAGCTGC+TGG | 0.544833 | 5_1:+3874435 | Msa0712020:CDS |
| AGTGGGAGTGACGGCGACGG+TGG | 0.547039 | 5_1:+3870156 | Msa0712020:CDS |
| AGTGGGAAAACGGCGTCGTA+CGG | 0.547183 | 5_1:+3870095 | Msa0712020:five_prime_UTR |
| GCCGGTTTAGCTTCTGAAGG+TGG | 0.550536 | 5_1:+3870343 | Msa0712020:CDS |
| TTTCAACGCCGTTCGTACTG+AGG | 0.551274 | 5_1:+3873347 | Msa0712020:CDS |
| TATGTTGATAATCTTCCTAA+CGG | 0.553392 | 5_1:+3870391 | Msa0712020:CDS |
| AAGCTTTAAACGAAATATTG+GGG | 0.554190 | 5_1:+3874610 | Msa0712020:CDS |
| AAGATTGGTCGTGACGGGAG+TGG | 0.556777 | 5_1:+3874477 | Msa0712020:CDS |
| GCATCACAGGTGGACGGAGT+AGG | 0.560009 | 5_1:+3874502 | Msa0712020:CDS |
| AGAACGAATTCTGATTTACA+GGG | 0.561090 | 5_1:-3874798 | None:intergenic |
| TTTGATCGATCGGTGAAGAT+GGG | 0.566547 | 5_1:+3870124 | Msa0712020:exon |
| TGTTGATATATATAAATAGC+AGG | 0.566775 | 5_1:-3874740 | None:intergenic |
| TCTACTTCATGCTCAAGGAC+GGG | 0.569738 | 5_1:-3871751 | None:intergenic |
| GGTGAGAAATCTTCGGAGAG+TGG | 0.572421 | 5_1:+3870077 | Msa0712020:five_prime_UTR |
| GTGAGAAATCTTCGGAGAGT+GGG | 0.574804 | 5_1:+3870078 | Msa0712020:five_prime_UTR |
| TTTGATGGCTGCCATGCATG+AGG | 0.574951 | 5_1:+3874202 | Msa0712020:CDS |
| GTGTTGAAAGAGTTTGAAGA+AGG | 0.576656 | 5_1:+3870259 | Msa0712020:CDS |
| TCTCAGGATGTCACTAGAGT+CGG | 0.577140 | 5_1:+3873297 | Msa0712020:CDS |
| GTCGCTCTACTTCATGCTCA+AGG | 0.578601 | 5_1:-3871756 | None:intergenic |
| TAGGTTGTCAATATGGAATG+GGG | 0.578992 | 5_1:+3873061 | Msa0712020:intron |
| ATGATATCAGGAATGTATCT+CGG | 0.579708 | 5_1:+3873253 | Msa0712020:CDS |
| TCATGCATGGCAGCCATCAA+AGG | 0.579757 | 5_1:-3874200 | None:intergenic |
| TCATGCTCAAGGACGGGAGA+TGG | 0.579799 | 5_1:-3871745 | None:intergenic |
| GCTGCAATAGTCATTGGTAC+TGG | 0.581228 | 5_1:+3872883 | Msa0712020:CDS |
| TGTTGGAAGGTTAAGGCAAG+TGG | 0.583503 | 5_1:+3870294 | Msa0712020:CDS |
| TTGTGCCAGTCATTAGATGT+GGG | 0.585935 | 5_1:-3871789 | None:intergenic |
| AAGATGGGAAGAGTGGTAGT+GGG | 0.588287 | 5_1:+3870139 | Msa0712020:exon |
| GTGGTGGCATCACAGGTGGA+CGG | 0.589673 | 5_1:+3874496 | Msa0712020:CDS |
| CACGCCGGTTTAGCTTCTGA+AGG | 0.591635 | 5_1:+3870340 | Msa0712020:CDS |
| TTGAAGAAGATTGGTCGTGA+CGG | 0.592268 | 5_1:+3874471 | Msa0712020:CDS |
| AGATGGTTCCAATACTTCAC+AGG | 0.592323 | 5_1:+3871970 | Msa0712020:CDS |
| TGATTCGATTTAACAAACTC+CGG | 0.594125 | 5_1:-3869972 | None:intergenic |
| GTGACTAACCATATCTACAA+TGG | 0.594940 | 5_1:-3872083 | None:intergenic |
| GTTAGGAAGATTATCAACAT+AGG | 0.595626 | 5_1:-3870389 | None:intergenic |
| AGTGGTTGATGCTATGGCGG+TGG | 0.596296 | 5_1:+3870312 | Msa0712020:CDS |
| ATTGGTCGTGACGGGAGTGG+TGG | 0.597920 | 5_1:+3874480 | Msa0712020:CDS |
| GAAGGTTGTGATACGAGTGT+TGG | 0.604021 | 5_1:+3870277 | Msa0712020:CDS |
| GTTGTGATACGAGTGTTGGA+AGG | 0.610760 | 5_1:+3870281 | Msa0712020:CDS |
| GGGAGTGGTGGCATCACAGG+TGG | 0.611199 | 5_1:+3874492 | Msa0712020:CDS |
| ACAGTTGTGGCAATTGAAGG+AGG | 0.611717 | 5_1:+3874546 | Msa0712020:CDS |
| ACTGTTGGAACATTAGCTGT+TGG | 0.612811 | 5_1:+3872835 | Msa0712020:CDS |
| AGGTTGTCAATATGGAATGG+GGG | 0.613620 | 5_1:+3873062 | Msa0712020:intron |
| ACGGGAAACGGAAAACTCGC+CGG | 0.614599 | 5_1:-3869945 | None:intergenic |
| AGGTGAATCATCCTCATGCA+TGG | 0.614958 | 5_1:-3874213 | None:intergenic |
| ACGGATGTAGTTTGATCGAT+CGG | 0.615773 | 5_1:+3870114 | Msa0712020:five_prime_UTR |
| GTGCCAGTCATTAGATGTGG+GGG | 0.615915 | 5_1:-3871787 | None:intergenic |
| GTGTGATGTGGTGACTCGTA+GGG | 0.616871 | 5_1:+3874413 | Msa0712020:CDS |
| TCTAATGACTGGCACAAGCA+AGG | 0.620748 | 5_1:+3871795 | Msa0712020:CDS |
| TGTATCTCGGTGACATCGTG+AGG | 0.623745 | 5_1:+3873266 | Msa0712020:CDS |
| ATCGGTGAAGATGGGAAGAG+TGG | 0.624776 | 5_1:+3870132 | Msa0712020:exon |
| TGTGTGATGTGGTGACTCGT+AGG | 0.625058 | 5_1:+3874412 | Msa0712020:CDS |
| AAGAGTGGTAGTGGGAGTGA+CGG | 0.625333 | 5_1:+3870147 | Msa0712020:CDS |
| CGAAGATGGATCAGGCATTG+GGG | 0.630238 | 5_1:+3874668 | Msa0712020:CDS |
| TCTTACAACATCAGGACGCA+TGG | 0.630747 | 5_1:+3872960 | Msa0712020:CDS |
| CAATACTTCACAGGACAGAA+GGG | 0.631867 | 5_1:+3871979 | Msa0712020:CDS |
| GATGCTATTATCAAGTGTCA+GGG | 0.635033 | 5_1:+3872934 | Msa0712020:CDS |
| TTACCTCAAAGGTGTCGTTG+AGG | 0.645156 | 5_1:-3874259 | None:intergenic |
| ATGGCGGTGGAGATGCACGC+CGG | 0.645387 | 5_1:+3870325 | Msa0712020:CDS |
| CCACTTGATTAAAATGCCCG+AGG | 0.646430 | 5_1:-3872047 | None:intergenic |
| TGTTGTGAAGGTGTGTGATG+TGG | 0.646930 | 5_1:+3874401 | Msa0712020:CDS |
| GGTAGTGGGAGTGACGGCGA+CGG | 0.652117 | 5_1:+3870153 | Msa0712020:CDS |
| CTATTGCATTTACAACCCAA+AGG | 0.653388 | 5_1:-3874953 | None:intergenic |
| TATTATGCGCTGCATCTTGG+GGG | 0.666308 | 5_1:+3871682 | Msa0712020:CDS |
| GGTACAAACCTCAGTACGAA+CGG | 0.676112 | 5_1:-3873355 | None:intergenic |
| AGCTTTAAACGAAATATTGG+GGG | 0.680619 | 5_1:+3874611 | Msa0712020:CDS |
| GCAAGTGGTTGATGCTATGG+CGG | 0.693157 | 5_1:+3870309 | Msa0712020:CDS |
| TGTGCCAGTCATTAGATGTG+GGG | 0.693796 | 5_1:-3871788 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTTTTTGATTTATTATGTT+TGG | + | chr5_1:3870536-3870555 | Msa0712020:intron | 15.0% |
| !!! | TCTTAATTGATCTTTAAAAT+TGG | + | chr5_1:3872113-3872132 | Msa0712020:intron | 15.0% |
| !!! | AAAAGTTTTTGTATAAAAGA+AGG | - | chr5_1:3872580-3872599 | None:intergenic | 15.0% |
| !! | TAAATGATAATAGTTGTAAA+TGG | + | chr5_1:3872625-3872644 | Msa0712020:intron | 15.0% |
| !! | AGTAATATAATGAAACAAAT+AGG | - | chr5_1:3872774-3872793 | None:intergenic | 15.0% |
| !!! | AGTTCTTATTTTTCATTTTT+GGG | + | chr5_1:3873002-3873021 | Msa0712020:intron | 15.0% |
| !! | TTCAATGTCTAAAAAAATTA+AGG | - | chr5_1:3873632-3873651 | None:intergenic | 15.0% |
| !!! | ATTTCCTTTATTTTCTAAAC+CGG | + | chr5_1:3869853-3869872 | Msa0712020:five_prime_UTR | 20.0% |
| !!! | GTCATTTTCTCAAATTTTAT+CGG | + | chr5_1:3871161-3871180 | Msa0712020:intron | 20.0% |
| !! | AAACAAACCAATTTAACAAA+AGG | - | chr5_1:3871632-3871651 | None:intergenic | 20.0% |
| !! | TTTAACGTTATTACATGAAA+AGG | - | chr5_1:3871881-3871900 | None:intergenic | 20.0% |
| !! | GAAAAACAAATCATACAATT+AGG | - | chr5_1:3872357-3872376 | None:intergenic | 20.0% |
| !!! | ATGTTTTTGATCTAAATGTA+AGG | + | chr5_1:3872512-3872531 | Msa0712020:intron | 20.0% |
| !!! | TTTTTGATTTCATTTTAAGC+AGG | + | chr5_1:3872804-3872823 | Msa0712020:intron | 20.0% |
| !!! | CAGTTCTTATTTTTCATTTT+TGG | + | chr5_1:3873001-3873020 | Msa0712020:intron | 20.0% |
| !!! | ATTTGTTATGACTAAAACTT+TGG | + | chr5_1:3873204-3873223 | Msa0712020:intron | 20.0% |
| !! | TGTTCTGTTATTCAATAAAA+AGG | + | chr5_1:3873446-3873465 | Msa0712020:intron | 20.0% |
| !! | CTATTAACTTAGTTAATGAA+GGG | - | chr5_1:3873675-3873694 | None:intergenic | 20.0% |
| !! | ACTATTAACTTAGTTAATGA+AGG | - | chr5_1:3873676-3873695 | None:intergenic | 20.0% |
| !!! | TATATGGTTTTTAGATTTAC+AGG | - | chr5_1:3874328-3874347 | None:intergenic | 20.0% |
| !! | AAAACCATATATCTTGTATT+TGG | + | chr5_1:3874337-3874356 | Msa0712020:intron | 20.0% |
| !! | ATATTCTTAAAAATGTGGAT+AGG | + | chr5_1:3874710-3874729 | Msa0712020:exon | 20.0% |
| !! | TATTCTTAAAAATGTGGATA+GGG | + | chr5_1:3874711-3874730 | Msa0712020:exon | 20.0% |
| !! | TGTTGATATATATAAATAGC+AGG | - | chr5_1:3874743-3874762 | None:intergenic | 20.0% |
| !! | TATTTAATATCTCTGTATAG+AGG | + | chr5_1:3874824-3874843 | Msa0712020:three_prime_UTR | 20.0% |
| !!! | TATGTTGATAATCTTCCTAA+CGG | + | chr5_1:3870391-3870410 | Msa0712020:CDS | 25.0% |
| ! | ACAAAAACATAGACAAAACT+GGG | - | chr5_1:3870595-3870614 | None:intergenic | 25.0% |
| ! | AACAAAAACATAGACAAAAC+TGG | - | chr5_1:3870596-3870615 | None:intergenic | 25.0% |
| ! | TGTTTATGGAAAATGTACTT+TGG | + | chr5_1:3870775-3870794 | Msa0712020:intron | 25.0% |
| ! | GGATTTGGACATTTAATAAA+TGG | + | chr5_1:3870796-3870815 | Msa0712020:intron | 25.0% |
| ! | TTCAATGTAATCATATGTGT+CGG | - | chr5_1:3871137-3871156 | None:intergenic | 25.0% |
| !! | TTTCTCAAATTTTATCGGTA+TGG | + | chr5_1:3871166-3871185 | Msa0712020:intron | 25.0% |
| !!! | TTTTTTATCAGTACTGAGAA+AGG | + | chr5_1:3871655-3871674 | Msa0712020:intron | 25.0% |
| !! | CAGAGAAAATCAAAGTTTTA+GGG | - | chr5_1:3871835-3871854 | None:intergenic | 25.0% |
| !! | AAATTGAATTTTATGCTTGC+AGG | + | chr5_1:3871898-3871917 | Msa0712020:intron | 25.0% |
| ! | AAACAGACATTTGTTTCATA+GGG | - | chr5_1:3872027-3872046 | None:intergenic | 25.0% |
| !!! | ATTTTAATCAAGTGGACAAA+AGG | + | chr5_1:3872055-3872074 | Msa0712020:CDS | 25.0% |
| !! | TTTTAATCAAGTGGACAAAA+GGG | + | chr5_1:3872056-3872075 | Msa0712020:CDS | 25.0% |
| ! | TATGTATTATACCTTAATCC+CGG | - | chr5_1:3872434-3872453 | None:intergenic | 25.0% |
| ! | AGAAAAAAACAATCTGTTGA+AGG | - | chr5_1:3872481-3872500 | None:intergenic | 25.0% |
| !!! | TCAACAGATTGTTTTTTTCT+AGG | + | chr5_1:3872481-3872500 | Msa0712020:intron | 25.0% |
| !!! | CAACAGATTGTTTTTTTCTA+GGG | + | chr5_1:3872482-3872501 | Msa0712020:intron | 25.0% |
| !! | GATATCTTAATTTGATGTGA+AGG | + | chr5_1:3872720-3872739 | Msa0712020:intron | 25.0% |
| ! | TAATTTGATGTGAAGGAAAA+TGG | + | chr5_1:3872727-3872746 | Msa0712020:intron | 25.0% |
| ! | AATTTGATGTGAAGGAAAAT+GGG | + | chr5_1:3872728-3872747 | Msa0712020:intron | 25.0% |
| ! | TATTCAATAAAAAGGCAATC+TGG | + | chr5_1:3873454-3873473 | Msa0712020:intron | 25.0% |
| !! | TATTTTTCTTTTAGCACACA+AGG | + | chr5_1:3873820-3873839 | Msa0712020:intron | 25.0% |
| !! | ATTTTTCTTTTAGCACACAA+GGG | + | chr5_1:3873821-3873840 | Msa0712020:intron | 25.0% |
| !! | AATTGACTTTGCTATAAACT+TGG | + | chr5_1:3873866-3873885 | Msa0712020:intron | 25.0% |
| !!! | CATATTTTTTGTCCCTAAAT+GGG | + | chr5_1:3874295-3874314 | Msa0712020:intron | 25.0% |
| ! | AAAAATGAAAAGAACAGTTG+TGG | + | chr5_1:3874533-3874552 | Msa0712020:CDS | 25.0% |
| !!! | TGAAGCTTTAAACGAAATAT+TGG | + | chr5_1:3874608-3874627 | Msa0712020:CDS | 25.0% |
| !!! | GAAGCTTTAAACGAAATATT+GGG | + | chr5_1:3874609-3874628 | Msa0712020:CDS | 25.0% |
| !!! | AAGCTTTAAACGAAATATTG+GGG | + | chr5_1:3874610-3874629 | Msa0712020:CDS | 25.0% |
| ! | GCATCATATTCTTAAAAATG+TGG | + | chr5_1:3874705-3874724 | Msa0712020:exon | 25.0% |
| ! | GTTGTAAATGCAATAGTATT+AGG | + | chr5_1:3874960-3874979 | Msa0712020:three_prime_UTR | 25.0% |
| TGATTCGATTTAACAAACTC+CGG | - | chr5_1:3869975-3869994 | None:intergenic | 30.0% | |
| GTTAGGAAGATTATCAACAT+AGG | - | chr5_1:3870392-3870411 | None:intergenic | 30.0% | |
| !! | ATGTTGATAATCTTCCTAAC+GGG | + | chr5_1:3870392-3870411 | Msa0712020:CDS | 30.0% |
| TGGAAAATGTACTTTGGATT+TGG | + | chr5_1:3870781-3870800 | Msa0712020:intron | 30.0% | |
| ! | TAATTTGCAAGCTGTAAGAA+TGG | + | chr5_1:3870874-3870893 | Msa0712020:intron | 30.0% |
| !! | AATGGTTGATAGATTGTGTT+TGG | + | chr5_1:3870892-3870911 | Msa0712020:intron | 30.0% |
| TTGATAGATTGTGTTTGGAT+TGG | + | chr5_1:3870897-3870916 | Msa0712020:intron | 30.0% | |
| !!! | ATTGTGTTTGGATTGGTTTT+GGG | + | chr5_1:3870904-3870923 | Msa0712020:intron | 30.0% |
| TGATTGATAGATTGTGTGTT+TGG | + | chr5_1:3871283-3871302 | Msa0712020:intron | 30.0% | |
| AGTCTATGACAGCTATTTAT+TGG | + | chr5_1:3871348-3871367 | Msa0712020:intron | 30.0% | |
| GTCTATGACAGCTATTTATT+GGG | + | chr5_1:3871349-3871368 | Msa0712020:intron | 30.0% | |
| TCCTTATCTTTAGCAAGATT+TGG | + | chr5_1:3871542-3871561 | Msa0712020:intron | 30.0% | |
| ACCAAATCTTGCTAAAGATA+AGG | - | chr5_1:3871546-3871565 | None:intergenic | 30.0% | |
| ACCAATTTAACAAAAGGACT+CGG | - | chr5_1:3871626-3871645 | None:intergenic | 30.0% | |
| ! | GCAGAGAAAATCAAAGTTTT+AGG | - | chr5_1:3871836-3871855 | None:intergenic | 30.0% |
| GAATTCATTGCTAAAGAAGA+TGG | + | chr5_1:3871953-3871972 | Msa0712020:CDS | 30.0% | |
| GAAACAGACATTTGTTTCAT+AGG | - | chr5_1:3872028-3872047 | None:intergenic | 30.0% | |
| ! | GCTTGTTTGGTAACTATTTA+TGG | - | chr5_1:3872158-3872177 | None:intergenic | 30.0% |
| CAAATCATACAATTAGGCTA+AGG | - | chr5_1:3872351-3872370 | None:intergenic | 30.0% | |
| AAAAAACAATCTGTTGAAGG+CGG | - | chr5_1:3872478-3872497 | None:intergenic | 30.0% | |
| !! | GAACTTATTTTCCGTCTTTT+AGG | + | chr5_1:3873042-3873061 | Msa0712020:intron | 30.0% |
| CATATTGACAACCTAAAAGA+CGG | - | chr5_1:3873056-3873075 | None:intergenic | 30.0% | |
| !! | TTTAGGTTGTCAATATGGAA+TGG | + | chr5_1:3873059-3873078 | Msa0712020:intron | 30.0% |
| ! | TTAGGTTGTCAATATGGAAT+GGG | + | chr5_1:3873060-3873079 | Msa0712020:intron | 30.0% |
| TAACCTGATCATTTGGATTA+GGG | - | chr5_1:3873147-3873166 | None:intergenic | 30.0% | |
| ATCAAGCAACAAAAGTCATT+AGG | - | chr5_1:3873179-3873198 | None:intergenic | 30.0% | |
| ! | TGACTAAAACTTTGGTGATT+TGG | + | chr5_1:3873212-3873231 | Msa0712020:intron | 30.0% |
| ! | GACTAAAACTTTGGTGATTT+GGG | + | chr5_1:3873213-3873232 | Msa0712020:intron | 30.0% |
| !!! | GGTTTTGAGAAAATGATATC+AGG | + | chr5_1:3873241-3873260 | Msa0712020:CDS | 30.0% |
| ATGATATCAGGAATGTATCT+CGG | + | chr5_1:3873253-3873272 | Msa0712020:CDS | 30.0% | |
| TATGTATGACCAATGTCTTT+AGG | + | chr5_1:3873395-3873414 | Msa0712020:intron | 30.0% | |
| ! | GTATGTTTTCCTAAAGACAT+TGG | - | chr5_1:3873407-3873426 | None:intergenic | 30.0% |
| GGAAAACATACTTGATACTA+TGG | + | chr5_1:3873416-3873435 | Msa0712020:intron | 30.0% | |
| ATTGAATAACAGAACACATC+TGG | - | chr5_1:3873442-3873461 | None:intergenic | 30.0% | |
| ! | ACCTATTGTTGTTCTATTGT+AGG | + | chr5_1:3873516-3873535 | Msa0712020:intron | 30.0% |
| !! | TATTGTAGGCAGTTTTATCT+TGG | + | chr5_1:3873530-3873549 | Msa0712020:intron | 30.0% |
| ATCTTGGTTATACAAAGCAT+TGG | + | chr5_1:3873546-3873565 | Msa0712020:intron | 30.0% | |
| !! | GTTATACAAAGCATTGGAAA+AGG | + | chr5_1:3873552-3873571 | Msa0712020:intron | 30.0% |
| TATGTTTCATGCACTACAAT+TGG | - | chr5_1:3873727-3873746 | None:intergenic | 30.0% | |
| ! | TTTTTCTTTTAGCACACAAG+GGG | + | chr5_1:3873822-3873841 | Msa0712020:intron | 30.0% |
| ATCAAAACAAGAAAAGCCAA+AGG | - | chr5_1:3873910-3873929 | None:intergenic | 30.0% | |
| GCTGATAAGATATATTTCCT+TGG | + | chr5_1:3874091-3874110 | Msa0712020:intron | 30.0% | |
| AAAACCAGAACAATTGAGTA+TGG | - | chr5_1:3874131-3874150 | None:intergenic | 30.0% | |
| TCAAATTCAAACCAGAGATT+TGG | - | chr5_1:3874154-3874173 | None:intergenic | 30.0% | |
| CCATTTAGGGACAAAAAATA+TGG | - | chr5_1:3874297-3874316 | None:intergenic | 30.0% | |
| !!! | CCATATTTTTTGTCCCTAAA+TGG | + | chr5_1:3874294-3874313 | Msa0712020:intron | 30.0% |
| !! | TGGTTTTTAGATTTACAGGA+AGG | - | chr5_1:3874324-3874343 | None:intergenic | 30.0% |
| ACAGCCAAATACAAGATATA+TGG | - | chr5_1:3874344-3874363 | None:intergenic | 30.0% | |
| ! | ACAATTTTTCTTGCCTTCAA+TGG | - | chr5_1:3874384-3874403 | None:intergenic | 30.0% |
| !! | AGCTTTAAACGAAATATTGG+GGG | + | chr5_1:3874611-3874630 | Msa0712020:CDS | 30.0% |
| AGAACGAATTCTGATTTACA+GGG | - | chr5_1:3874801-3874820 | None:intergenic | 30.0% | |
| AAGAACGAATTCTGATTTAC+AGG | - | chr5_1:3874802-3874821 | None:intergenic | 30.0% | |
| GTTTCATCTATTCTTTGATC+AGG | + | chr5_1:3874846-3874865 | Msa0712020:three_prime_UTR | 30.0% | |
| ATAAGTTGTAAGAGATCCTT+TGG | + | chr5_1:3874937-3874956 | Msa0712020:three_prime_UTR | 30.0% | |
| TAAGTTGTAAGAGATCCTTT+GGG | + | chr5_1:3874938-3874957 | Msa0712020:three_prime_UTR | 30.0% | |
| CAGAGAGAAAAAGAAAGAAG+GGG | - | chr5_1:3869884-3869903 | None:intergenic | 35.0% | |
| GCAGAGAGAAAAAGAAAGAA+GGG | - | chr5_1:3869885-3869904 | None:intergenic | 35.0% | |
| TGCAGAGAGAAAAAGAAAGA+AGG | - | chr5_1:3869886-3869905 | None:intergenic | 35.0% | |
| TTTAACAAACTCCGGTGAAA+CGG | - | chr5_1:3869967-3869986 | None:intergenic | 35.0% | |
| TTGTTGCGTGCATGATAAAA+CGG | + | chr5_1:3870040-3870059 | Msa0712020:five_prime_UTR | 35.0% | |
| TTCTTTCGGTGAGAAATCTT+CGG | + | chr5_1:3870070-3870089 | Msa0712020:five_prime_UTR | 35.0% | |
| GTGTTGAAAGAGTTTGAAGA+AGG | + | chr5_1:3870259-3870278 | Msa0712020:CDS | 35.0% | |
| AGAAAAAGTGATTACCCGTT+AGG | - | chr5_1:3870409-3870428 | None:intergenic | 35.0% | |
| !! | GTTCAACAGTGTCATTTCAA+CGG | + | chr5_1:3870558-3870577 | Msa0712020:intron | 35.0% |
| AAACATAGACAAAACTGGGA+AGG | - | chr5_1:3870591-3870610 | None:intergenic | 35.0% | |
| GTTGTCTATTTCATGCTTTC+TGG | + | chr5_1:3870660-3870679 | Msa0712020:intron | 35.0% | |
| GCAATGAAAAACACCTAACA+TGG | - | chr5_1:3870690-3870709 | None:intergenic | 35.0% | |
| !!! | GATTGTGTTTGGATTGGTTT+TGG | + | chr5_1:3870903-3870922 | Msa0712020:intron | 35.0% |
| TATGAAGCACATATACTCCT+CGG | + | chr5_1:3871057-3871076 | Msa0712020:intron | 35.0% | |
| ! | AGGTGATTCATGATTTGTGT+CGG | + | chr5_1:3871229-3871248 | Msa0712020:intron | 35.0% |
| GATAGATTGTGTGTTTGGAT+TGG | + | chr5_1:3871288-3871307 | Msa0712020:intron | 35.0% | |
| ATGACAGCTATTTATTGGGA+TGG | + | chr5_1:3871353-3871372 | Msa0712020:intron | 35.0% | |
| TGACAGCTATTTATTGGGAT+GGG | + | chr5_1:3871354-3871373 | Msa0712020:intron | 35.0% | |
| AGTAGCATATACAAATCCAC+CGG | - | chr5_1:3871496-3871515 | None:intergenic | 35.0% | |
| ! | ACCGAGTCCTTTTGTTAAAT+TGG | + | chr5_1:3871622-3871641 | Msa0712020:intron | 35.0% |
| ! | ATCTTGGGGGAACAAATTTT+AGG | + | chr5_1:3871695-3871714 | Msa0712020:CDS | 35.0% |
| ! | TCTTGGGGGAACAAATTTTA+GGG | + | chr5_1:3871696-3871715 | Msa0712020:CDS | 35.0% |
| !!! | GAACAAATTTTAGGGTAACG+CGG | + | chr5_1:3871704-3871723 | Msa0712020:CDS | 35.0% |
| !!! | AACAAATTTTAGGGTAACGC+GGG | + | chr5_1:3871705-3871724 | Msa0712020:CDS | 35.0% |
| AGACATTTGTTTCATAGGGA+AGG | - | chr5_1:3872023-3872042 | None:intergenic | 35.0% | |
| GAAACAAATGTCTGTTTCCT+CGG | + | chr5_1:3872030-3872049 | Msa0712020:CDS | 35.0% | |
| AAACAAATGTCTGTTTCCTC+GGG | + | chr5_1:3872031-3872050 | Msa0712020:CDS | 35.0% | |
| ! | AGGGTTTTCCATTGTAGATA+TGG | + | chr5_1:3872075-3872094 | Msa0712020:CDS | 35.0% |
| GTGACTAACCATATCTACAA+TGG | - | chr5_1:3872086-3872105 | None:intergenic | 35.0% | |
| ATAGGACATACATGCTTGTT+TGG | - | chr5_1:3872171-3872190 | None:intergenic | 35.0% | |
| AAACCAAGTGCAACTTGAAT+AGG | - | chr5_1:3872189-3872208 | None:intergenic | 35.0% | |
| ACCTGACAACAAATAGCTTT+GGG | - | chr5_1:3872240-3872259 | None:intergenic | 35.0% | |
| AACCTGACAACAAATAGCTT+TGG | - | chr5_1:3872241-3872260 | None:intergenic | 35.0% | |
| !! | AAAGCTATTTGTTGTCAGGT+TGG | + | chr5_1:3872240-3872259 | Msa0712020:intron | 35.0% |
| CATACAATTAGGCTAAGGAA+AGG | - | chr5_1:3872346-3872365 | None:intergenic | 35.0% | |
| TTGCTTTCAGAGGGAAATAT+TGG | - | chr5_1:3872389-3872408 | None:intergenic | 35.0% | |
| TTGCCTTATACTTACACAAC+CGG | + | chr5_1:3872412-3872431 | Msa0712020:intron | 35.0% | |
| AAGCAGGTTAATGATACTGT+TGG | + | chr5_1:3872820-3872839 | Msa0712020:intron | 35.0% | |
| TGATGCTATTATCAAGTGTC+AGG | + | chr5_1:3872933-3872952 | Msa0712020:CDS | 35.0% | |
| GATGCTATTATCAAGTGTCA+GGG | + | chr5_1:3872934-3872953 | Msa0712020:CDS | 35.0% | |
| !!! | CGTCTTTTAGGTTGTCAATA+TGG | + | chr5_1:3873054-3873073 | Msa0712020:intron | 35.0% |
| TAGGTTGTCAATATGGAATG+GGG | + | chr5_1:3873061-3873080 | Msa0712020:intron | 35.0% | |
| TCAATGTCATACTGTGTTCT+TGG | - | chr5_1:3873109-3873128 | None:intergenic | 35.0% | |
| CTAACCTGATCATTTGGATT+AGG | - | chr5_1:3873148-3873167 | None:intergenic | 35.0% | |
| CTAATCCAAATGATCAGGTT+AGG | + | chr5_1:3873146-3873165 | Msa0712020:intron | 35.0% | |
| GTTGAAAGCTTCGAAGAAAT+AGG | - | chr5_1:3873334-3873353 | None:intergenic | 35.0% | |
| CATAGTGTATGACTGAGAAT+CGG | - | chr5_1:3873379-3873398 | None:intergenic | 35.0% | |
| ! | AAAGCATCTCTTATGTGTCT+AGG | + | chr5_1:3873483-3873502 | Msa0712020:intron | 35.0% |
| AAGCATCTCTTATGTGTCTA+GGG | + | chr5_1:3873484-3873503 | Msa0712020:intron | 35.0% | |
| GCCTACAATAGAACAACAAT+AGG | - | chr5_1:3873520-3873539 | None:intergenic | 35.0% | |
| TTGTAGTGCATGAAACATAG+TGG | + | chr5_1:3873728-3873747 | Msa0712020:intron | 35.0% | |
| CTTTCTTTCATATCCTCTTG+TGG | + | chr5_1:3873771-3873790 | Msa0712020:intron | 35.0% | |
| TTACATATGACAACTGCCTT+TGG | + | chr5_1:3873891-3873910 | Msa0712020:intron | 35.0% | |
| GTGTACATAGAATAGAATGC+AGG | - | chr5_1:3873986-3874005 | None:intergenic | 35.0% | |
| !!! | ATGCACAGTTTGTTTTTTCC+TGG | + | chr5_1:3874027-3874046 | Msa0712020:intron | 35.0% |
| !!! | GTTTTTTCCTGGAGTATTTG+AGG | + | chr5_1:3874038-3874057 | Msa0712020:intron | 35.0% |
| TGGAACATTGTAGTTATCCA+AGG | - | chr5_1:3874111-3874130 | None:intergenic | 35.0% | |
| TGTTCCATACTCAATTGTTC+TGG | + | chr5_1:3874124-3874143 | Msa0712020:intron | 35.0% | |
| ! | TCTGAAACTCTTGTCATTTC+AGG | + | chr5_1:3874174-3874193 | Msa0712020:intron | 35.0% |
| GTCTGACTTATTTACCTCAA+AGG | - | chr5_1:3874273-3874292 | None:intergenic | 35.0% | |
| GGCAAGAAAAATTGTTGTGA+AGG | + | chr5_1:3874389-3874408 | Msa0712020:CDS | 35.0% | |
| ATTCTTAATGTCACCGAAGA+TGG | + | chr5_1:3874654-3874673 | Msa0712020:CDS | 35.0% | |
| CTATTGCATTTACAACCCAA+AGG | - | chr5_1:3874956-3874975 | None:intergenic | 35.0% | |
| GGCTCCGGTTTAGAAAATAA+AGG | - | chr5_1:3869860-3869879 | None:intergenic | 40.0% | |
| AGAGAAAAAGAAAGAAGGGG+CGG | - | chr5_1:3869881-3869900 | None:intergenic | 40.0% | |
| TTTCTCTCTCTTACTTTCGC+CGG | + | chr5_1:3869910-3869929 | Msa0712020:five_prime_UTR | 40.0% | |
| TCGCCGGAAAATTAAATCTC+CGG | + | chr5_1:3869926-3869945 | Msa0712020:five_prime_UTR | 40.0% | |
| !! | TCGCCGGAGATTTAATTTTC+CGG | - | chr5_1:3869932-3869951 | None:intergenic | 40.0% |
| TTAACAAACTCCGGTGAAAC+GGG | - | chr5_1:3869966-3869985 | None:intergenic | 40.0% | |
| ! | AAAACGGCGACGTTTTCTTT+CGG | + | chr5_1:3870056-3870075 | Msa0712020:five_prime_UTR | 40.0% |
| ACGGATGTAGTTTGATCGAT+CGG | + | chr5_1:3870114-3870133 | Msa0712020:five_prime_UTR | 40.0% | |
| TTTGATCGATCGGTGAAGAT+GGG | + | chr5_1:3870124-3870143 | Msa0712020:exon | 40.0% | |
| GAGTGAAGAGTAGAAGAAAG+TGG | + | chr5_1:3870221-3870240 | Msa0712020:CDS | 40.0% | |
| !! | ATACGAGTGTTGGAAGGTTA+AGG | + | chr5_1:3870287-3870306 | Msa0712020:CDS | 40.0% |
| AGTCTATGCCAGCTATTTAC+TGG | + | chr5_1:3870959-3870978 | Msa0712020:intron | 40.0% | |
| TATGCCAGCTATTTACTGGT+TGG | + | chr5_1:3870963-3870982 | Msa0712020:intron | 40.0% | |
| AATGCCAACCAGTAAATAGC+TGG | - | chr5_1:3870970-3870989 | None:intergenic | 40.0% | |
| !! | TCACTTTTCGCAAAGCAAAC+CGG | - | chr5_1:3871032-3871051 | None:intergenic | 40.0% |
| GATTAGGTGTGTCCTTATGT+CGG | + | chr5_1:3871079-3871098 | Msa0712020:intron | 40.0% | |
| CATGAATCACCTATGAAGCA+TGG | - | chr5_1:3871221-3871240 | None:intergenic | 40.0% | |
| !! | TTGTGTGTTTGGATTGGTGT+TGG | + | chr5_1:3871294-3871313 | Msa0712020:intron | 40.0% |
| !! | TGTGTGTTTGGATTGGTGTT+GGG | + | chr5_1:3871295-3871314 | Msa0712020:intron | 40.0% |
| ACTAGATCTGCCAATCAAGA+AGG | + | chr5_1:3871465-3871484 | Msa0712020:intron | 40.0% | |
| GTAGCATATACAAATCCACC+GGG | - | chr5_1:3871495-3871514 | None:intergenic | 40.0% | |
| CTTGCTAAAGATAAGGAGTG+CGG | - | chr5_1:3871539-3871558 | None:intergenic | 40.0% | |
| CATATTATGCGCTGCATCTT+GGG | + | chr5_1:3871680-3871699 | Msa0712020:CDS | 40.0% | |
| ATATTATGCGCTGCATCTTG+GGG | + | chr5_1:3871681-3871700 | Msa0712020:CDS | 40.0% | |
| TTGTGCCAGTCATTAGATGT+GGG | - | chr5_1:3871792-3871811 | None:intergenic | 40.0% | |
| AGATGGTTCCAATACTTCAC+AGG | + | chr5_1:3871970-3871989 | Msa0712020:CDS | 40.0% | |
| CAATACTTCACAGGACAGAA+GGG | + | chr5_1:3871979-3871998 | Msa0712020:CDS | 40.0% | |
| !! | TGTCCTATTCAAGTTGCACT+TGG | + | chr5_1:3872183-3872202 | Msa0712020:intron | 40.0% |
| !! | ACCCAAAGCTATTTGTTGTC+AGG | + | chr5_1:3872236-3872255 | Msa0712020:intron | 40.0% |
| AGGAAAGGAATTCCTTACCA+AGG | - | chr5_1:3872331-3872350 | None:intergenic | 40.0% | |
| TGCCTTATACTTACACAACC+GGG | + | chr5_1:3872413-3872432 | Msa0712020:intron | 40.0% | |
| ATCCCGGTTGTGTAAGTATA+AGG | - | chr5_1:3872418-3872437 | None:intergenic | 40.0% | |
| TACTTACACAACCGGGATTA+AGG | + | chr5_1:3872420-3872439 | Msa0712020:intron | 40.0% | |
| ACTGTTGGAACATTAGCTGT+TGG | + | chr5_1:3872835-3872854 | Msa0712020:CDS | 40.0% | |
| CTGTTGGAACATTAGCTGTT+GGG | + | chr5_1:3872836-3872855 | Msa0712020:CDS | 40.0% | |
| ACTGTTGCTGCAATAGTCAT+TGG | + | chr5_1:3872877-3872896 | Msa0712020:CDS | 40.0% | |
| AGGTTGTCAATATGGAATGG+GGG | + | chr5_1:3873062-3873081 | Msa0712020:intron | 40.0% | |
| ! | ATATGGAATGGGGGAACTTT+TGG | + | chr5_1:3873071-3873090 | Msa0712020:CDS | 40.0% |
| AAGCCCTAATCCAAATGATC+AGG | + | chr5_1:3873141-3873160 | Msa0712020:CDS | 40.0% | |
| CAGAACCTAACCTGATCATT+TGG | - | chr5_1:3873154-3873173 | None:intergenic | 40.0% | |
| TCACTAGAGTCGGATATGTT+TGG | + | chr5_1:3873307-3873326 | Msa0712020:CDS | 40.0% | |
| CAATAAAAAGGCAATCTGGC+AGG | + | chr5_1:3873458-3873477 | Msa0712020:intron | 40.0% | |
| TCTCTTATGTGTCTAGGGAA+TGG | + | chr5_1:3873489-3873508 | Msa0712020:intron | 40.0% | |
| ! | CTTAGTTAATGAAGGGCGTA+TGG | - | chr5_1:3873668-3873687 | None:intergenic | 40.0% |
| ! | AGTCGTCTTATTACCACAAG+AGG | - | chr5_1:3873787-3873806 | None:intergenic | 40.0% |
| ACACTCGAACATTTGTTTGC+TGG | + | chr5_1:3873955-3873974 | Msa0712020:intron | 40.0% | |
| ! | CAGCCTATGCATCATTTTCA+CGG | - | chr5_1:3874075-3874094 | None:intergenic | 40.0% |
| !!! | GTTCTGGTTTTCCAAATCTC+TGG | + | chr5_1:3874140-3874159 | Msa0712020:intron | 40.0% |
| TCATTTCAGGACTCCTTTGA+TGG | + | chr5_1:3874187-3874206 | Msa0712020:intron | 40.0% | |
| ! | CTTGCTACTTCTATCAAGTC+AGG | - | chr5_1:3874236-3874255 | None:intergenic | 40.0% |
| GATTCCAGATCTTCCATTGA+AGG | + | chr5_1:3874368-3874387 | Msa0712020:intron | 40.0% | |
| GTTGGCATCTTGAAGAAGAT+TGG | + | chr5_1:3874462-3874481 | Msa0712020:CDS | 40.0% | |
| ! | TTGAAGAAGATTGGTCGTGA+CGG | + | chr5_1:3874471-3874490 | Msa0712020:CDS | 40.0% |
| AGAACAGTTGTGGCAATTGA+AGG | + | chr5_1:3874543-3874562 | Msa0712020:CDS | 40.0% | |
| ! | TTTTCCGTTTCCCGTTTCAC+CGG | + | chr5_1:3869953-3869972 | Msa0712020:five_prime_UTR | 45.0% |
| GTGAGAAATCTTCGGAGAGT+GGG | + | chr5_1:3870078-3870097 | Msa0712020:five_prime_UTR | 45.0% | |
| ATCTTCGGAGAGTGGGAAAA+CGG | + | chr5_1:3870085-3870104 | Msa0712020:five_prime_UTR | 45.0% | |
| GTTTGATCGATCGGTGAAGA+TGG | + | chr5_1:3870123-3870142 | Msa0712020:exon | 45.0% | |
| AAGATGGGAAGAGTGGTAGT+GGG | + | chr5_1:3870139-3870158 | Msa0712020:exon | 45.0% | |
| GAAGGTTGTGATACGAGTGT+TGG | + | chr5_1:3870277-3870296 | Msa0712020:CDS | 45.0% | |
| !! | GTTGTGATACGAGTGTTGGA+AGG | + | chr5_1:3870281-3870300 | Msa0712020:CDS | 45.0% |
| TGTTGGAAGGTTAAGGCAAG+TGG | + | chr5_1:3870294-3870313 | Msa0712020:CDS | 45.0% | |
| ! | AAGGCAAGTGGTTGATGCTA+TGG | + | chr5_1:3870306-3870325 | Msa0712020:CDS | 45.0% |
| ACCACCTTCAGAAGCTAAAC+CGG | - | chr5_1:3870347-3870366 | None:intergenic | 45.0% | |
| !! | GCTTTCTGGAGTACCATGTT+AGG | + | chr5_1:3870674-3870693 | Msa0712020:intron | 45.0% |
| !!! | GTTTGGATTGGTTTTGGGAG+AGG | + | chr5_1:3870909-3870928 | Msa0712020:intron | 45.0% |
| TGAACTGACACAGTGACACA+TGG | - | chr5_1:3870935-3870954 | None:intergenic | 45.0% | |
| GGTTGGCATTTAACACGCTA+AGG | + | chr5_1:3870980-3870999 | Msa0712020:intron | 45.0% | |
| GCACATATACTCCTCGGATT+AGG | + | chr5_1:3871063-3871082 | Msa0712020:intron | 45.0% | |
| ATAAGGACACACCTAATCCG+AGG | - | chr5_1:3871077-3871096 | None:intergenic | 45.0% | |
| CAGCTAGAACCAACAATGCA+TGG | - | chr5_1:3871414-3871433 | None:intergenic | 45.0% | |
| CCAAGATGCAGCGCATAATA+TGG | - | chr5_1:3871682-3871701 | None:intergenic | 45.0% | |
| CCATATTATGCGCTGCATCT+TGG | + | chr5_1:3871679-3871698 | Msa0712020:CDS | 45.0% | |
| TATTATGCGCTGCATCTTGG+GGG | + | chr5_1:3871682-3871701 | Msa0712020:CDS | 45.0% | |
| GTAACGCGGGTTCATTTAAG+TGG | + | chr5_1:3871718-3871737 | Msa0712020:CDS | 45.0% | |
| TCTACTTCATGCTCAAGGAC+GGG | - | chr5_1:3871754-3871773 | None:intergenic | 45.0% | |
| CTCTACTTCATGCTCAAGGA+CGG | - | chr5_1:3871755-3871774 | None:intergenic | 45.0% | |
| GTCATTAGATGTGGGGGAAT+AGG | - | chr5_1:3871784-3871803 | None:intergenic | 45.0% | |
| ATTCCCCCACATCTAATGAC+TGG | + | chr5_1:3871784-3871803 | Msa0712020:CDS | 45.0% | |
| TGTGCCAGTCATTAGATGTG+GGG | - | chr5_1:3871791-3871810 | None:intergenic | 45.0% | |
| CTTGTGCCAGTCATTAGATG+TGG | - | chr5_1:3871793-3871812 | None:intergenic | 45.0% | |
| TCTAATGACTGGCACAAGCA+AGG | + | chr5_1:3871795-3871814 | Msa0712020:CDS | 45.0% | |
| CCTTCTGTCCTGTGAAGTAT+TGG | - | chr5_1:3871981-3872000 | None:intergenic | 45.0% | |
| CCAATACTTCACAGGACAGA+AGG | + | chr5_1:3871978-3871997 | Msa0712020:CDS | 45.0% | |
| CCACTTGATTAAAATGCCCG+AGG | - | chr5_1:3872050-3872069 | None:intergenic | 45.0% | |
| !! | CCTCGGGCATTTTAATCAAG+TGG | + | chr5_1:3872047-3872066 | Msa0712020:CDS | 45.0% |
| AGATGTTGCAGCATGTTTGC+AGG | + | chr5_1:3872266-3872285 | Msa0712020:CDS | 45.0% | |
| !! | CAGGAAGCATTTGCACGAAA+TGG | + | chr5_1:3872285-3872304 | Msa0712020:CDS | 45.0% |
| ! | AGGCAAGCATTGCTTTCAGA+GGG | - | chr5_1:3872398-3872417 | None:intergenic | 45.0% |
| ! | AAGGCAAGCATTGCTTTCAG+AGG | - | chr5_1:3872399-3872418 | None:intergenic | 45.0% |
| ACTATTGCAGCAACAGTGTC+TGG | - | chr5_1:3872874-3872893 | None:intergenic | 45.0% | |
| GCTGCAATAGTCATTGGTAC+TGG | + | chr5_1:3872883-3872902 | Msa0712020:CDS | 45.0% | |
| TGGTACTAATGCCTGCTACT+TGG | + | chr5_1:3872903-3872922 | Msa0712020:CDS | 45.0% | |
| ATCAATTCGCTCCAAGTAGC+AGG | - | chr5_1:3872917-3872936 | None:intergenic | 45.0% | |
| CAGGGTCTTCTTACAACATC+AGG | + | chr5_1:3872952-3872971 | Msa0712020:CDS | 45.0% | |
| TCTTACAACATCAGGACGCA+TGG | + | chr5_1:3872960-3872979 | Msa0712020:CDS | 45.0% | |
| ! | AACTTTGGTGATTTGGGTGC+AGG | + | chr5_1:3873219-3873238 | Msa0712020:intron | 45.0% |
| ! | ACTTTGGTGATTTGGGTGCA+GGG | + | chr5_1:3873220-3873239 | Msa0712020:intron | 45.0% |
| TCTCAGGATGTCACTAGAGT+CGG | + | chr5_1:3873297-3873316 | Msa0712020:CDS | 45.0% | |
| GGTACAAACCTCAGTACGAA+CGG | - | chr5_1:3873358-3873377 | None:intergenic | 45.0% | |
| CATGTCACCTCAAATACTCC+AGG | - | chr5_1:3874048-3874067 | None:intergenic | 45.0% | |
| GCTCCGTGAAAATGATGCAT+AGG | + | chr5_1:3874069-3874088 | Msa0712020:intron | 45.0% | |
| AGGTGAATCATCCTCATGCA+TGG | - | chr5_1:3874216-3874235 | None:intergenic | 45.0% | |
| !! | TACCTCAAAGGTGTCGTTGA+GGG | - | chr5_1:3874261-3874280 | None:intergenic | 45.0% |
| !! | TTACCTCAAAGGTGTCGTTG+AGG | - | chr5_1:3874262-3874281 | None:intergenic | 45.0% |
| ACAGGAAGGACACCCATTTA+GGG | - | chr5_1:3874310-3874329 | None:intergenic | 45.0% | |
| TACAGGAAGGACACCCATTT+AGG | - | chr5_1:3874311-3874330 | None:intergenic | 45.0% | |
| CTTGCCTTCAATGGAAGATC+TGG | - | chr5_1:3874375-3874394 | None:intergenic | 45.0% | |
| ! | TGTTGTGAAGGTGTGTGATG+TGG | + | chr5_1:3874401-3874420 | Msa0712020:CDS | 45.0% |
| TTAGCAGCTGCTGGTATTGT+TGG | + | chr5_1:3874444-3874463 | Msa0712020:CDS | 45.0% | |
| ! | TGAAGAAGATTGGTCGTGAC+GGG | + | chr5_1:3874472-3874491 | Msa0712020:CDS | 45.0% |
| ACAGTTGTGGCAATTGAAGG+AGG | + | chr5_1:3874546-3874565 | Msa0712020:CDS | 45.0% | |
| AATGTCACCGAAGATGGATC+AGG | + | chr5_1:3874660-3874679 | Msa0712020:CDS | 45.0% | |
| !! | ATAAAAATTAGAAATTTAAA+CGG | - | chr5_1:3870626-3870645 | None:intergenic | 5.0% |
| !!! | TTTTATTTAAATTTTGTTTA+TGG | + | chr5_1:3870761-3870780 | Msa0712020:intron | 5.0% |
| AACTCCGGTGAAACGGGAAA+CGG | - | chr5_1:3869960-3869979 | None:intergenic | 50.0% | |
| GGTGAGAAATCTTCGGAGAG+TGG | + | chr5_1:3870077-3870096 | Msa0712020:five_prime_UTR | 50.0% | |
| ATCGGTGAAGATGGGAAGAG+TGG | + | chr5_1:3870132-3870151 | Msa0712020:exon | 50.0% | |
| GAAGATGGGAAGAGTGGTAG+TGG | + | chr5_1:3870138-3870157 | Msa0712020:exon | 50.0% | |
| !! | AAGAGTGGTAGTGGGAGTGA+CGG | + | chr5_1:3870147-3870166 | Msa0712020:CDS | 50.0% |
| ! | GCAAGTGGTTGATGCTATGG+CGG | + | chr5_1:3870309-3870328 | Msa0712020:CDS | 50.0% |
| ACGCACATAGATGTGCCTGT+TGG | + | chr5_1:3871006-3871025 | Msa0712020:intron | 50.0% | |
| ACATAGATGTGCCTGTTGGC+CGG | + | chr5_1:3871010-3871029 | Msa0712020:intron | 50.0% | |
| CACGACACGTATCCGACATA+AGG | - | chr5_1:3871094-3871113 | None:intergenic | 50.0% | |
| ATGAAGCATGGACTCAGACG+CGG | - | chr5_1:3871209-3871228 | None:intergenic | 50.0% | |
| CGTCTGAGTCCATGCTTCAT+AGG | + | chr5_1:3871209-3871228 | Msa0712020:intron | 50.0% | |
| GGATGGGATTTAACGCGCTA+CGG | + | chr5_1:3871370-3871389 | Msa0712020:intron | 50.0% | |
| GTCGCTCTACTTCATGCTCA+AGG | - | chr5_1:3871759-3871778 | None:intergenic | 50.0% | |
| GTGCCAGTCATTAGATGTGG+GGG | - | chr5_1:3871790-3871809 | None:intergenic | 50.0% | |
| TCACAGGACAGAAGGGAACT+TGG | + | chr5_1:3871986-3872005 | Msa0712020:CDS | 50.0% | |
| AGGCAGCTACATGCACATCT+AGG | - | chr5_1:3872311-3872330 | None:intergenic | 50.0% | |
| AGATGTGCATGTAGCTGCCT+TGG | + | chr5_1:3872311-3872330 | Msa0712020:CDS | 50.0% | |
| TGCATGTAGCTGCCTTGGTA+AGG | + | chr5_1:3872316-3872335 | Msa0712020:intron | 50.0% | |
| TGTATCTCGGTGACATCGTG+AGG | + | chr5_1:3873266-3873285 | Msa0712020:CDS | 50.0% | |
| TCGTGAGGAGAGTCATTCTC+AGG | + | chr5_1:3873281-3873300 | Msa0712020:CDS | 50.0% | |
| TTTCAACGCCGTTCGTACTG+AGG | + | chr5_1:3873347-3873366 | Msa0712020:CDS | 50.0% | |
| TCATGCATGGCAGCCATCAA+AGG | - | chr5_1:3874203-3874222 | None:intergenic | 50.0% | |
| ! | TTTGATGGCTGCCATGCATG+AGG | + | chr5_1:3874202-3874221 | Msa0712020:CDS | 50.0% |
| AACCCTCAACGACACCTTTG+AGG | + | chr5_1:3874256-3874275 | Msa0712020:CDS | 50.0% | |
| TGTGTGATGTGGTGACTCGT+AGG | + | chr5_1:3874412-3874431 | Msa0712020:CDS | 50.0% | |
| GTGTGATGTGGTGACTCGTA+GGG | + | chr5_1:3874413-3874432 | Msa0712020:CDS | 50.0% | |
| ACCGAAGATGGATCAGGCAT+TGG | + | chr5_1:3874666-3874685 | Msa0712020:CDS | 50.0% | |
| CCCAATGCCTGATCCATCTT+CGG | - | chr5_1:3874670-3874689 | None:intergenic | 50.0% | |
| CCGAAGATGGATCAGGCATT+GGG | + | chr5_1:3874667-3874686 | Msa0712020:CDS | 50.0% | |
| ! | CGAAGATGGATCAGGCATTG+GGG | + | chr5_1:3874668-3874687 | Msa0712020:CDS | 50.0% |
| AAAGAAAGAAGGGGCGGCTC+CGG | - | chr5_1:3869875-3869894 | None:intergenic | 55.0% | |
| ACGGGAAACGGAAAACTCGC+CGG | - | chr5_1:3869948-3869967 | None:intergenic | 55.0% | |
| AGTGGGAAAACGGCGTCGTA+CGG | + | chr5_1:3870095-3870114 | Msa0712020:five_prime_UTR | 55.0% | |
| ! | AGTGGTTGATGCTATGGCGG+TGG | + | chr5_1:3870312-3870331 | Msa0712020:CDS | 55.0% |
| !! | CACGCCGGTTTAGCTTCTGA+AGG | + | chr5_1:3870340-3870359 | Msa0712020:CDS | 55.0% |
| ! | GCCGGTTTAGCTTCTGAAGG+TGG | + | chr5_1:3870343-3870362 | Msa0712020:CDS | 55.0% |
| TGTCGGATACGTGTCGTGTC+CGG | + | chr5_1:3871096-3871115 | Msa0712020:intron | 55.0% | |
| !! | TCGGTGTCATGTCGTGTTGC+CGG | - | chr5_1:3871118-3871137 | None:intergenic | 55.0% |
| ACAATGCATGGCGCGTCTGT+TGG | - | chr5_1:3871402-3871421 | None:intergenic | 55.0% | |
| ACAGACGCGCCATGCATTGT+TGG | + | chr5_1:3871402-3871421 | Msa0712020:intron | 55.0% | |
| GCCAATCAAGAAGGTTCGCC+CGG | + | chr5_1:3871474-3871493 | Msa0712020:intron | 55.0% | |
| ACCGGGCGAACCTTCTTGAT+TGG | - | chr5_1:3871478-3871497 | None:intergenic | 55.0% | |
| AATCAAGAAGGTTCGCCCGG+TGG | + | chr5_1:3871477-3871496 | Msa0712020:intron | 55.0% | |
| TCATGCTCAAGGACGGGAGA+TGG | - | chr5_1:3871748-3871767 | None:intergenic | 55.0% | |
| ! | AAGATTGGTCGTGACGGGAG+TGG | + | chr5_1:3874477-3874496 | Msa0712020:CDS | 55.0% |
| CGCAAAGCAAACCGGCCAAC+AGG | - | chr5_1:3871024-3871043 | None:intergenic | 60.0% | |
| GCTGCTCGATTAGCAGCTGC+TGG | + | chr5_1:3874435-3874454 | Msa0712020:CDS | 60.0% | |
| ! | ATTGGTCGTGACGGGAGTGG+TGG | + | chr5_1:3874480-3874499 | Msa0712020:CDS | 60.0% |
| GTGGTGGCATCACAGGTGGA+CGG | + | chr5_1:3874496-3874515 | Msa0712020:CDS | 60.0% | |
| GCATCACAGGTGGACGGAGT+AGG | + | chr5_1:3874502-3874521 | Msa0712020:CDS | 60.0% | |
| !! | GGTAGTGGGAGTGACGGCGA+CGG | + | chr5_1:3870153-3870172 | Msa0712020:CDS | 65.0% |
| ATGGCGGTGGAGATGCACGC+CGG | + | chr5_1:3870325-3870344 | Msa0712020:CDS | 65.0% | |
| GACGGGAGTGGTGGCATCAC+AGG | + | chr5_1:3874489-3874508 | Msa0712020:CDS | 65.0% | |
| GGGAGTGGTGGCATCACAGG+TGG | + | chr5_1:3874492-3874511 | Msa0712020:CDS | 65.0% | |
| AGTGGGAGTGACGGCGACGG+TGG | + | chr5_1:3870156-3870175 | Msa0712020:CDS | 70.0% | |
| GGGAGTGACGGCGACGGTGG+CGG | + | chr5_1:3870159-3870178 | Msa0712020:CDS | 75.0% | |
| ! | AGTGACGGCGACGGTGGCGG+TGG | + | chr5_1:3870162-3870181 | Msa0712020:CDS | 75.0% |
| !! | GACGGCGACGGTGGCGGTGG+CGG | + | chr5_1:3870165-3870184 | Msa0712020:CDS | 80.0% |
| !! | GGTGGCGGTGGCGGCGTGTG+CGG | + | chr5_1:3870174-3870193 | Msa0712020:CDS | 80.0% |
| !! | GGTGGCGGCGTGTGCGGTGG+CGG | + | chr5_1:3870180-3870199 | Msa0712020:CDS | 80.0% |
| !! | GGCGGTGGCGGCGTGTGCGG+TGG | + | chr5_1:3870177-3870196 | Msa0712020:CDS | 85.0% |
| !! | GGCGGCGTGTGCGGTGGCGG+CGG | + | chr5_1:3870183-3870202 | Msa0712020:CDS | 85.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 3869850 | 3875046 | 3869850 | ID=Msa0712020;Name=Msa0712020 |
| chr5_1 | mRNA | 3869850 | 3875046 | 3869850 | ID=Msa0712020-mRNA-1;Parent=Msa0712020;Name=Msa0712020-mRNA-1;_AED=0.10;_eAED=0.10;_QI=292|1|1|1|1|1|9|327|496 |
| chr5_1 | exon | 3869850 | 3870413 | 3869850 | ID=Msa0712020-mRNA-1:exon:1452;Parent=Msa0712020-mRNA-1 |
| chr5_1 | exon | 3871666 | 3871816 | 3871666 | ID=Msa0712020-mRNA-1:exon:1453;Parent=Msa0712020-mRNA-1 |
| chr5_1 | exon | 3871920 | 3872096 | 3871920 | ID=Msa0712020-mRNA-1:exon:1454;Parent=Msa0712020-mRNA-1 |
| chr5_1 | exon | 3872258 | 3872332 | 3872258 | ID=Msa0712020-mRNA-1:exon:1455;Parent=Msa0712020-mRNA-1 |
| chr5_1 | exon | 3872826 | 3872981 | 3872826 | ID=Msa0712020-mRNA-1:exon:1456;Parent=Msa0712020-mRNA-1 |
| chr5_1 | exon | 3873064 | 3873162 | 3873064 | ID=Msa0712020-mRNA-1:exon:1457;Parent=Msa0712020-mRNA-1 |
| chr5_1 | exon | 3873241 | 3873368 | 3873241 | ID=Msa0712020-mRNA-1:exon:1458;Parent=Msa0712020-mRNA-1 |
| chr5_1 | exon | 3874196 | 3874277 | 3874196 | ID=Msa0712020-mRNA-1:exon:1459;Parent=Msa0712020-mRNA-1 |
| chr5_1 | exon | 3874369 | 3875046 | 3874369 | ID=Msa0712020-mRNA-1:exon:1460;Parent=Msa0712020-mRNA-1 |
| chr5_1 | five_prime_UTR | 3869850 | 3870141 | 3869850 | ID=Msa0712020-mRNA-1:five_prime_utr;Parent=Msa0712020-mRNA-1 |
| chr5_1 | CDS | 3870142 | 3870413 | 3870142 | ID=Msa0712020-mRNA-1:cds;Parent=Msa0712020-mRNA-1 |
| chr5_1 | CDS | 3871666 | 3871816 | 3871666 | ID=Msa0712020-mRNA-1:cds;Parent=Msa0712020-mRNA-1 |
| chr5_1 | CDS | 3871920 | 3872096 | 3871920 | ID=Msa0712020-mRNA-1:cds;Parent=Msa0712020-mRNA-1 |
| chr5_1 | CDS | 3872258 | 3872332 | 3872258 | ID=Msa0712020-mRNA-1:cds;Parent=Msa0712020-mRNA-1 |
| chr5_1 | CDS | 3872826 | 3872981 | 3872826 | ID=Msa0712020-mRNA-1:cds;Parent=Msa0712020-mRNA-1 |
| chr5_1 | CDS | 3873064 | 3873162 | 3873064 | ID=Msa0712020-mRNA-1:cds;Parent=Msa0712020-mRNA-1 |
| chr5_1 | CDS | 3873241 | 3873368 | 3873241 | ID=Msa0712020-mRNA-1:cds;Parent=Msa0712020-mRNA-1 |
| chr5_1 | CDS | 3874196 | 3874277 | 3874196 | ID=Msa0712020-mRNA-1:cds;Parent=Msa0712020-mRNA-1 |
| chr5_1 | CDS | 3874369 | 3874719 | 3874369 | ID=Msa0712020-mRNA-1:cds;Parent=Msa0712020-mRNA-1 |
| chr5_1 | three_prime_UTR | 3874720 | 3875046 | 3874720 | ID=Msa0712020-mRNA-1:three_prime_utr;Parent=Msa0712020-mRNA-1 |
| Gene Sequence |
| Protein sequence |
