AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750250


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750250 MtrunA17_Chr5g0396421 98.893 271 3 0 1 271 226 496 0.0 550
Msa0750250 MtrunA17_Chr8g0389821 55.147 272 112 3 1 271 228 490 6.17e-100 301
Msa0750250 MtrunA17_Chr8g0340741 55.147 272 112 3 1 271 227 489 1.97e-95 289
Msa0750250 MtrunA17_Chr6g0487071 52.206 272 120 2 1 271 226 488 7.20e-94 285
Msa0750250 MtrunA17_Chr1g0156571 49.265 272 126 4 1 271 230 490 2.34e-81 253
Msa0750250 MtrunA17_Chr4g0054541 49.045 157 77 2 1 156 5 159 7.18e-44 146
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750250 AT1G50460.3 75.556 270 64 2 1 269 151 419 8.18e-149 423
Msa0750250 AT1G50460.1 75.556 270 64 2 1 269 227 495 9.35e-148 423
Msa0750250 AT3G20040.1 71.747 269 72 2 1 269 228 492 1.45e-123 362
Msa0750250 AT2G19860.2 52.941 272 118 2 1 271 119 381 4.44e-97 290
Msa0750250 AT4G29130.1 53.309 272 117 2 1 271 228 490 4.71e-97 293
Msa0750250 AT2G19860.1 52.941 272 118 2 1 271 228 490 9.07e-96 290
Msa0750250 AT1G47840.1 48.551 276 121 6 1 271 232 491 6.32e-77 242
Msa0750250 AT1G50460.2 82.812 128 22 0 1 128 227 354 7.76e-74 230
Msa0750250 AT4G37840.1 47.212 269 127 2 1 268 228 482 5.37e-71 226
Msa0750250 AT1G47845.1 45.890 146 75 3 52 195 40 183 8.02e-37 129
Msa0750250 AT1G47840.2 52.713 129 58 3 1 128 232 358 4.22e-36 132

Find 65 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGAAGCTTTAAACGAAATAT+TGG 0.248960 5_2:+3666869 Msa0750250:CDS
CTAACCTGATCATTTGGATT+AGG 0.252444 5_2:-3665370 None:intergenic
GAAGCTTTAAACGAAATATT+GGG 0.286275 5_2:+3666870 Msa0750250:CDS
TAACCTGATCATTTGGATTA+GGG 0.298457 5_2:-3665369 None:intergenic
TCAATGTCATACTGTGTTCT+TGG 0.301091 5_2:-3665331 None:intergenic
TCATTTCAGGACTCCTTTGA+TGG 0.304467 5_2:+3666448 Msa0750250:intron
CTTGCCTTCAATGGAAGATC+TGG 0.322162 5_2:-3666633 None:intergenic
CAGAACCTAACCTGATCATT+TGG 0.382556 5_2:-3665376 None:intergenic
GATTCCAGATCTTCCATTGA+AGG 0.383594 5_2:+3666629 Msa0750250:intron
GTTGGCATCTTGAAGAAGAT+TGG 0.393117 5_2:+3666723 Msa0750250:CDS
GTTGAAAGCTTCGAAGAAAT+AGG 0.397856 5_2:-3665556 None:intergenic
CCGAAGATGGATCAGGCATT+GGG 0.399324 5_2:+3666928 Msa0750250:CDS
ACTATTGCAGCAACAGTGTC+TGG 0.403276 5_2:-3665096 None:intergenic
TTAGCAGCTGCTGGTATTGT+TGG 0.409433 5_2:+3666705 Msa0750250:CDS
ATTCTTAATGTCACCGAAGA+TGG 0.411432 5_2:+3666915 Msa0750250:CDS
TGATGCTATTATCAAGTGTC+AGG 0.416448 5_2:+3665158 Msa0750250:CDS
TTAGGTTGTCAATATGGAAT+GGG 0.425444 5_2:+3665285 Msa0750250:intron
TCACTAGAGTCGGATATGTT+TGG 0.429372 5_2:+3665532 Msa0750250:CDS
GACGGGAGTGGTGGCATCAC+AGG 0.450160 5_2:+3666750 Msa0750250:CDS
CTTGCTACTTCTATCAAGTC+AGG 0.456183 5_2:-3666494 None:intergenic
AATCCTCAACGACACCTTTG+AGG 0.459020 5_2:+3666517 Msa0750250:CDS
TTTAGGTTGTCAATATGGAA+TGG 0.460418 5_2:+3665284 Msa0750250:intron
CCCAATGCCTGATCCATCTT+CGG 0.469673 5_2:-3666928 None:intergenic
ACCGAAGATGGATCAGGCAT+TGG 0.478914 5_2:+3666927 Msa0750250:CDS
CTGTTGGAACATTAGCTGTT+GGG 0.486153 5_2:+3665061 Msa0750250:CDS
ATCAATTCGCTCCAAGTAGC+AGG 0.487352 5_2:-3665139 None:intergenic
TGGTACTAATGCCTGCTACT+TGG 0.489030 5_2:+3665128 Msa0750250:CDS
AAGCAGGTTAATGATACTGT+TGG 0.489212 5_2:+3665045 None:intergenic
AAGCCCTAATCCAAATGATC+AGG 0.491358 5_2:+3665366 Msa0750250:CDS
CAGGGTCTTCTTACAACATC+AGG 0.499400 5_2:+3665177 Msa0750250:CDS
TGAAGAAGATTGGTCGTGAC+GGG 0.506742 5_2:+3666733 Msa0750250:CDS
AGAACAGTTGTGGCAATTGA+AGG 0.507809 5_2:+3666804 Msa0750250:CDS
AATGTCACCGAAGATGGATC+AGG 0.512205 5_2:+3666921 Msa0750250:CDS
ACTGTTGCTGCAATAGTCAT+TGG 0.514702 5_2:+3665102 Msa0750250:CDS
TCGTGAGGAGAGTCATTCTC+AGG 0.519035 5_2:+3665506 Msa0750250:CDS
GCTGCTCGATTAGCAGCTGC+TGG 0.519064 5_2:+3666696 Msa0750250:CDS
GTCTGACTTATTTACCTCAA+AGG 0.532138 5_2:-3666531 None:intergenic
TTTCAACGCCGTTCGTACTG+AGG 0.551274 5_2:+3665572 Msa0750250:CDS
AAGCTTTAAACGAAATATTG+GGG 0.554190 5_2:+3666871 Msa0750250:CDS
AAGATTGGTCGTGACGGGAG+TGG 0.556777 5_2:+3666738 Msa0750250:CDS
GCATCACAGGTGGACGGAGT+AGG 0.560009 5_2:+3666763 Msa0750250:CDS
TTTGATGGCTGCCATGCATG+AGG 0.574951 5_2:+3666463 Msa0750250:CDS
TCTCAGGATGTCACTAGAGT+CGG 0.577140 5_2:+3665522 Msa0750250:CDS
TAGGTTGTCAATATGGAATG+GGG 0.578992 5_2:+3665286 Msa0750250:intron
ATGATATCAGGAATGTATCT+CGG 0.579708 5_2:+3665478 Msa0750250:CDS
TCATGCATGGCAGCCATCAA+AGG 0.579757 5_2:-3666461 None:intergenic
GCTGCAATAGTCATTGGTAC+TGG 0.581228 5_2:+3665108 Msa0750250:CDS
GTGGTGGCATCACAGGTGGA+CGG 0.589673 5_2:+3666757 Msa0750250:CDS
TTGAAGAAGATTGGTCGTGA+CGG 0.592268 5_2:+3666732 Msa0750250:CDS
ATTGGTCGTGACGGGAGTGG+TGG 0.597920 5_2:+3666741 Msa0750250:CDS
GGGAGTGGTGGCATCACAGG+TGG 0.611199 5_2:+3666753 Msa0750250:CDS
ACAGTTGTGGCAATTGAAGG+AGG 0.611717 5_2:+3666807 Msa0750250:CDS
ACTGTTGGAACATTAGCTGT+TGG 0.612811 5_2:+3665060 Msa0750250:CDS
AGGTTGTCAATATGGAATGG+GGG 0.613620 5_2:+3665287 Msa0750250:intron
AGGTGAATCATCCTCATGCA+TGG 0.614958 5_2:-3666474 None:intergenic
TGTATCTCGGTGACATCGTG+AGG 0.623745 5_2:+3665491 Msa0750250:CDS
CGAAGATGGATCAGGCATTG+GGG 0.630238 5_2:+3666929 Msa0750250:CDS
TCTTACAACATCAGGACGCA+TGG 0.630747 5_2:+3665185 Msa0750250:CDS
GATGCTATTATCAAGTGTCA+GGG 0.635033 5_2:+3665159 Msa0750250:CDS
GTGTGATGTGGTGACTCGAA+GGG 0.640591 5_2:+3666674 Msa0750250:CDS
TTACCTCAAAGGTGTCGTTG+AGG 0.644762 5_2:-3666520 None:intergenic
TGTTGTGAAGGTGTGTGATG+TGG 0.646930 5_2:+3666662 Msa0750250:CDS
TGTGTGATGTGGTGACTCGA+AGG 0.656555 5_2:+3666673 Msa0750250:CDS
GGTACAAACCTCAGTACGAA+CGG 0.676112 5_2:-3665580 None:intergenic
AGCTTTAAACGAAATATTGG+GGG 0.680619 5_2:+3666872 Msa0750250:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AGTTCTTATTTTTCATTTTT+GGG + chr5_2:3665227-3665246 Msa0750250:intron 15.0%
!! TTCAATGTCTAAAAAAATTA+AGG - chr5_2:3665895-3665914 None:intergenic 15.0%
!!! AGTTCTTATTTTTCATTTTT+GGG + chr5_2:3665227-3665246 Msa0750250:intron 15.0%
!! TTCAATGTCTAAAAAAATTA+AGG - chr5_2:3665895-3665914 None:intergenic 15.0%
!!! CAGTTCTTATTTTTCATTTT+TGG + chr5_2:3665226-3665245 Msa0750250:intron 20.0%
!!! ATTTGTTATGACTAAAACTT+TGG + chr5_2:3665429-3665448 Msa0750250:intron 20.0%
!! TGTTCTGTTATTCAATAAAA+AGG + chr5_2:3665671-3665690 Msa0750250:intron 20.0%
!! GATGTGTATATATATTTATC+TGG + chr5_2:3665851-3665870 Msa0750250:intron 20.0%
!! TATATATTTATCTGGTGATT+TGG + chr5_2:3665859-3665878 Msa0750250:intron 20.0%
!! ATGTCTAAAAAAATTAAGGT+AGG - chr5_2:3665891-3665910 None:intergenic 20.0%
!! CTATTAACTTAGTTAATGAA+GGG - chr5_2:3665938-3665957 None:intergenic 20.0%
!! ACTATTAACTTAGTTAATGA+AGG - chr5_2:3665939-3665958 None:intergenic 20.0%
!!! TATATGGTTTTTAGATTTAC+AGG - chr5_2:3666589-3666608 None:intergenic 20.0%
!! AAAACCATATATCTTGTATT+TGG + chr5_2:3666598-3666617 Msa0750250:intron 20.0%
!!! CAGTTCTTATTTTTCATTTT+TGG + chr5_2:3665226-3665245 Msa0750250:intron 20.0%
!!! ATTTGTTATGACTAAAACTT+TGG + chr5_2:3665429-3665448 Msa0750250:intron 20.0%
!! TGTTCTGTTATTCAATAAAA+AGG + chr5_2:3665671-3665690 Msa0750250:intron 20.0%
!! GATGTGTATATATATTTATC+TGG + chr5_2:3665851-3665870 Msa0750250:intron 20.0%
!! TATATATTTATCTGGTGATT+TGG + chr5_2:3665859-3665878 Msa0750250:intron 20.0%
!! ATGTCTAAAAAAATTAAGGT+AGG - chr5_2:3665891-3665910 None:intergenic 20.0%
!! CTATTAACTTAGTTAATGAA+GGG - chr5_2:3665938-3665957 None:intergenic 20.0%
!! ACTATTAACTTAGTTAATGA+AGG - chr5_2:3665939-3665958 None:intergenic 20.0%
!!! TATATGGTTTTTAGATTTAC+AGG - chr5_2:3666589-3666608 None:intergenic 20.0%
!! AAAACCATATATCTTGTATT+TGG + chr5_2:3666598-3666617 Msa0750250:intron 20.0%
! TATTCAATAAAAAGGCAATC+TGG + chr5_2:3665679-3665698 Msa0750250:intron 25.0%
!! TATTTTTCTTTTAGCACACA+AGG + chr5_2:3666081-3666100 Msa0750250:intron 25.0%
!! ATTTTTCTTTTAGCACACAA+GGG + chr5_2:3666082-3666101 Msa0750250:intron 25.0%
!! AATTGACTTTGCTATAAACT+TGG + chr5_2:3666127-3666146 Msa0750250:intron 25.0%
!!! TTACATGCTTTTTGAAATGT+TGG + chr5_2:3666195-3666214 Msa0750250:intron 25.0%
!!! CATATTTTTTGTCCCTAAAT+GGG + chr5_2:3666556-3666575 Msa0750250:intron 25.0%
! AAAAATGAAAAGAACAGTTG+TGG + chr5_2:3666794-3666813 Msa0750250:CDS 25.0%
!!! TGAAGCTTTAAACGAAATAT+TGG + chr5_2:3666869-3666888 Msa0750250:CDS 25.0%
!!! GAAGCTTTAAACGAAATATT+GGG + chr5_2:3666870-3666889 Msa0750250:CDS 25.0%
!!! AAGCTTTAAACGAAATATTG+GGG + chr5_2:3666871-3666890 Msa0750250:CDS 25.0%
! TATTCAATAAAAAGGCAATC+TGG + chr5_2:3665679-3665698 Msa0750250:intron 25.0%
!! TATTTTTCTTTTAGCACACA+AGG + chr5_2:3666081-3666100 Msa0750250:intron 25.0%
!! ATTTTTCTTTTAGCACACAA+GGG + chr5_2:3666082-3666101 Msa0750250:intron 25.0%
!! AATTGACTTTGCTATAAACT+TGG + chr5_2:3666127-3666146 Msa0750250:intron 25.0%
!!! TTACATGCTTTTTGAAATGT+TGG + chr5_2:3666195-3666214 Msa0750250:intron 25.0%
!!! CATATTTTTTGTCCCTAAAT+GGG + chr5_2:3666556-3666575 Msa0750250:intron 25.0%
! AAAAATGAAAAGAACAGTTG+TGG + chr5_2:3666794-3666813 Msa0750250:CDS 25.0%
!!! TGAAGCTTTAAACGAAATAT+TGG + chr5_2:3666869-3666888 Msa0750250:CDS 25.0%
!!! GAAGCTTTAAACGAAATATT+GGG + chr5_2:3666870-3666889 Msa0750250:CDS 25.0%
!!! AAGCTTTAAACGAAATATTG+GGG + chr5_2:3666871-3666890 Msa0750250:CDS 25.0%
!! GAACTTATTTTCCGTCTTTT+AGG + chr5_2:3665267-3665286 Msa0750250:intron 30.0%
CATATTGACAACCTAAAAGA+CGG - chr5_2:3665281-3665300 None:intergenic 30.0%
!! TTTAGGTTGTCAATATGGAA+TGG + chr5_2:3665284-3665303 Msa0750250:intron 30.0%
! TTAGGTTGTCAATATGGAAT+GGG + chr5_2:3665285-3665304 Msa0750250:intron 30.0%
TAACCTGATCATTTGGATTA+GGG - chr5_2:3665372-3665391 None:intergenic 30.0%
ATCAAGCAACAAAAGTCATT+AGG - chr5_2:3665404-3665423 None:intergenic 30.0%
! TGACTAAAACTTTGGTGATT+TGG + chr5_2:3665437-3665456 Msa0750250:intron 30.0%
! GACTAAAACTTTGGTGATTT+GGG + chr5_2:3665438-3665457 Msa0750250:intron 30.0%
!!! GGTTTTGAGAAAATGATATC+AGG + chr5_2:3665466-3665485 Msa0750250:CDS 30.0%
ATGATATCAGGAATGTATCT+CGG + chr5_2:3665478-3665497 Msa0750250:CDS 30.0%
TATGTATGACCAATGTCTTT+AGG + chr5_2:3665620-3665639 Msa0750250:intron 30.0%
! GTATGTTTTCCTAAAGACAT+TGG - chr5_2:3665632-3665651 None:intergenic 30.0%
GGAAAACATACTTGATACTA+TGG + chr5_2:3665641-3665660 Msa0750250:intron 30.0%
ATTGAATAACAGAACACATC+TGG - chr5_2:3665667-3665686 None:intergenic 30.0%
! ACCTATTGTTGTTCTATTGT+AGG + chr5_2:3665741-3665760 Msa0750250:intron 30.0%
!! TATTGTAGGCAGTTTTATCT+TGG + chr5_2:3665755-3665774 Msa0750250:intron 30.0%
ATCTTGGTTATACAAAGCAT+TGG + chr5_2:3665771-3665790 Msa0750250:intron 30.0%
!! GTTATACAAAGCATTGGAAA+AGG + chr5_2:3665777-3665796 Msa0750250:intron 30.0%
TATGTTTCATGCACTACAAT+TGG - chr5_2:3665990-3666009 None:intergenic 30.0%
! TTTTTCTTTTAGCACACAAG+GGG + chr5_2:3666083-3666102 Msa0750250:intron 30.0%
ATCAAAACAAGAAAAGCCAA+AGG - chr5_2:3666171-3666190 None:intergenic 30.0%
GTGTACATAGAATAGAATAC+AGG - chr5_2:3666247-3666266 None:intergenic 30.0%
GCTGATAAGATATATTTCCT+TGG + chr5_2:3666352-3666371 Msa0750250:intron 30.0%
AAAACCAGAACAATTGAGTA+TGG - chr5_2:3666392-3666411 None:intergenic 30.0%
TCAAATTCAAACCAGAGATT+TGG - chr5_2:3666415-3666434 None:intergenic 30.0%
CCATTTAGGGACAAAAAATA+TGG - chr5_2:3666558-3666577 None:intergenic 30.0%
!!! CCATATTTTTTGTCCCTAAA+TGG + chr5_2:3666555-3666574 Msa0750250:intron 30.0%
!! TGGTTTTTAGATTTACAGGA+AGG - chr5_2:3666585-3666604 None:intergenic 30.0%
ACAGCCAAATACAAGATATA+TGG - chr5_2:3666605-3666624 None:intergenic 30.0%
! ACAATTTTTCTTGCCTTCAA+TGG - chr5_2:3666645-3666664 None:intergenic 30.0%
!! AGCTTTAAACGAAATATTGG+GGG + chr5_2:3666872-3666891 Msa0750250:CDS 30.0%
!! GAACTTATTTTCCGTCTTTT+AGG + chr5_2:3665267-3665286 Msa0750250:intron 30.0%
CATATTGACAACCTAAAAGA+CGG - chr5_2:3665281-3665300 None:intergenic 30.0%
!! TTTAGGTTGTCAATATGGAA+TGG + chr5_2:3665284-3665303 Msa0750250:intron 30.0%
! TTAGGTTGTCAATATGGAAT+GGG + chr5_2:3665285-3665304 Msa0750250:intron 30.0%
TAACCTGATCATTTGGATTA+GGG - chr5_2:3665372-3665391 None:intergenic 30.0%
ATCAAGCAACAAAAGTCATT+AGG - chr5_2:3665404-3665423 None:intergenic 30.0%
! TGACTAAAACTTTGGTGATT+TGG + chr5_2:3665437-3665456 Msa0750250:intron 30.0%
! GACTAAAACTTTGGTGATTT+GGG + chr5_2:3665438-3665457 Msa0750250:intron 30.0%
!!! GGTTTTGAGAAAATGATATC+AGG + chr5_2:3665466-3665485 Msa0750250:CDS 30.0%
ATGATATCAGGAATGTATCT+CGG + chr5_2:3665478-3665497 Msa0750250:CDS 30.0%
TATGTATGACCAATGTCTTT+AGG + chr5_2:3665620-3665639 Msa0750250:intron 30.0%
! GTATGTTTTCCTAAAGACAT+TGG - chr5_2:3665632-3665651 None:intergenic 30.0%
GGAAAACATACTTGATACTA+TGG + chr5_2:3665641-3665660 Msa0750250:intron 30.0%
ATTGAATAACAGAACACATC+TGG - chr5_2:3665667-3665686 None:intergenic 30.0%
! ACCTATTGTTGTTCTATTGT+AGG + chr5_2:3665741-3665760 Msa0750250:intron 30.0%
!! TATTGTAGGCAGTTTTATCT+TGG + chr5_2:3665755-3665774 Msa0750250:intron 30.0%
ATCTTGGTTATACAAAGCAT+TGG + chr5_2:3665771-3665790 Msa0750250:intron 30.0%
!! GTTATACAAAGCATTGGAAA+AGG + chr5_2:3665777-3665796 Msa0750250:intron 30.0%
TATGTTTCATGCACTACAAT+TGG - chr5_2:3665990-3666009 None:intergenic 30.0%
! TTTTTCTTTTAGCACACAAG+GGG + chr5_2:3666083-3666102 Msa0750250:intron 30.0%
ATCAAAACAAGAAAAGCCAA+AGG - chr5_2:3666171-3666190 None:intergenic 30.0%
GTGTACATAGAATAGAATAC+AGG - chr5_2:3666247-3666266 None:intergenic 30.0%
GCTGATAAGATATATTTCCT+TGG + chr5_2:3666352-3666371 Msa0750250:intron 30.0%
AAAACCAGAACAATTGAGTA+TGG - chr5_2:3666392-3666411 None:intergenic 30.0%
TCAAATTCAAACCAGAGATT+TGG - chr5_2:3666415-3666434 None:intergenic 30.0%
CCATTTAGGGACAAAAAATA+TGG - chr5_2:3666558-3666577 None:intergenic 30.0%
!!! CCATATTTTTTGTCCCTAAA+TGG + chr5_2:3666555-3666574 Msa0750250:intron 30.0%
!! TGGTTTTTAGATTTACAGGA+AGG - chr5_2:3666585-3666604 None:intergenic 30.0%
ACAGCCAAATACAAGATATA+TGG - chr5_2:3666605-3666624 None:intergenic 30.0%
! ACAATTTTTCTTGCCTTCAA+TGG - chr5_2:3666645-3666664 None:intergenic 30.0%
!! AGCTTTAAACGAAATATTGG+GGG + chr5_2:3666872-3666891 Msa0750250:CDS 30.0%
TGATGCTATTATCAAGTGTC+AGG + chr5_2:3665158-3665177 Msa0750250:CDS 35.0%
GATGCTATTATCAAGTGTCA+GGG + chr5_2:3665159-3665178 Msa0750250:CDS 35.0%
!!! CGTCTTTTAGGTTGTCAATA+TGG + chr5_2:3665279-3665298 Msa0750250:intron 35.0%
TAGGTTGTCAATATGGAATG+GGG + chr5_2:3665286-3665305 Msa0750250:intron 35.0%
TCAATGTCATACTGTGTTCT+TGG - chr5_2:3665334-3665353 None:intergenic 35.0%
CTAACCTGATCATTTGGATT+AGG - chr5_2:3665373-3665392 None:intergenic 35.0%
CTAATCCAAATGATCAGGTT+AGG + chr5_2:3665371-3665390 Msa0750250:intron 35.0%
GTTGAAAGCTTCGAAGAAAT+AGG - chr5_2:3665559-3665578 None:intergenic 35.0%
CATAGTGTATGACTGAGAAT+CGG - chr5_2:3665604-3665623 None:intergenic 35.0%
! AAAGCATCTCTTATGTGTCT+AGG + chr5_2:3665708-3665727 Msa0750250:intron 35.0%
AAGCATCTCTTATGTGTCTA+GGG + chr5_2:3665709-3665728 Msa0750250:intron 35.0%
GCCTACAATAGAACAACAAT+AGG - chr5_2:3665745-3665764 None:intergenic 35.0%
TTGTAGTGCATGAAACATAG+TGG + chr5_2:3665991-3666010 Msa0750250:intron 35.0%
CTTTCTTTCATATCCTCTTG+TGG + chr5_2:3666032-3666051 Msa0750250:intron 35.0%
TTACATATGACAACTGCCTT+TGG + chr5_2:3666152-3666171 Msa0750250:intron 35.0%
!!! ATGCACAGTTTGTTTTTTCC+TGG + chr5_2:3666288-3666307 Msa0750250:intron 35.0%
!!! GTTTTTTCCTGGAGTATTTG+AGG + chr5_2:3666299-3666318 Msa0750250:intron 35.0%
TGGAACATTGTAGTTATCCA+AGG - chr5_2:3666372-3666391 None:intergenic 35.0%
TGTTCCATACTCAATTGTTC+TGG + chr5_2:3666385-3666404 Msa0750250:intron 35.0%
! TCTGAAACTCTTGTCATTTC+AGG + chr5_2:3666435-3666454 Msa0750250:intron 35.0%
GTCTGACTTATTTACCTCAA+AGG - chr5_2:3666534-3666553 None:intergenic 35.0%
GGCAAGAAAAATTGTTGTGA+AGG + chr5_2:3666650-3666669 Msa0750250:CDS 35.0%
ATTCTTAATGTCACCGAAGA+TGG + chr5_2:3666915-3666934 Msa0750250:CDS 35.0%
TGATGCTATTATCAAGTGTC+AGG + chr5_2:3665158-3665177 Msa0750250:CDS 35.0%
GATGCTATTATCAAGTGTCA+GGG + chr5_2:3665159-3665178 Msa0750250:CDS 35.0%
!!! CGTCTTTTAGGTTGTCAATA+TGG + chr5_2:3665279-3665298 Msa0750250:intron 35.0%
TAGGTTGTCAATATGGAATG+GGG + chr5_2:3665286-3665305 Msa0750250:intron 35.0%
TCAATGTCATACTGTGTTCT+TGG - chr5_2:3665334-3665353 None:intergenic 35.0%
CTAACCTGATCATTTGGATT+AGG - chr5_2:3665373-3665392 None:intergenic 35.0%
CTAATCCAAATGATCAGGTT+AGG + chr5_2:3665371-3665390 Msa0750250:intron 35.0%
GTTGAAAGCTTCGAAGAAAT+AGG - chr5_2:3665559-3665578 None:intergenic 35.0%
CATAGTGTATGACTGAGAAT+CGG - chr5_2:3665604-3665623 None:intergenic 35.0%
! AAAGCATCTCTTATGTGTCT+AGG + chr5_2:3665708-3665727 Msa0750250:intron 35.0%
AAGCATCTCTTATGTGTCTA+GGG + chr5_2:3665709-3665728 Msa0750250:intron 35.0%
GCCTACAATAGAACAACAAT+AGG - chr5_2:3665745-3665764 None:intergenic 35.0%
TTGTAGTGCATGAAACATAG+TGG + chr5_2:3665991-3666010 Msa0750250:intron 35.0%
CTTTCTTTCATATCCTCTTG+TGG + chr5_2:3666032-3666051 Msa0750250:intron 35.0%
TTACATATGACAACTGCCTT+TGG + chr5_2:3666152-3666171 Msa0750250:intron 35.0%
!!! ATGCACAGTTTGTTTTTTCC+TGG + chr5_2:3666288-3666307 Msa0750250:intron 35.0%
!!! GTTTTTTCCTGGAGTATTTG+AGG + chr5_2:3666299-3666318 Msa0750250:intron 35.0%
TGGAACATTGTAGTTATCCA+AGG - chr5_2:3666372-3666391 None:intergenic 35.0%
TGTTCCATACTCAATTGTTC+TGG + chr5_2:3666385-3666404 Msa0750250:intron 35.0%
! TCTGAAACTCTTGTCATTTC+AGG + chr5_2:3666435-3666454 Msa0750250:intron 35.0%
GTCTGACTTATTTACCTCAA+AGG - chr5_2:3666534-3666553 None:intergenic 35.0%
GGCAAGAAAAATTGTTGTGA+AGG + chr5_2:3666650-3666669 Msa0750250:CDS 35.0%
ATTCTTAATGTCACCGAAGA+TGG + chr5_2:3666915-3666934 Msa0750250:CDS 35.0%
ACTGTTGGAACATTAGCTGT+TGG + chr5_2:3665060-3665079 Msa0750250:CDS 40.0%
CTGTTGGAACATTAGCTGTT+GGG + chr5_2:3665061-3665080 Msa0750250:CDS 40.0%
ACTGTTGCTGCAATAGTCAT+TGG + chr5_2:3665102-3665121 Msa0750250:CDS 40.0%
AGGTTGTCAATATGGAATGG+GGG + chr5_2:3665287-3665306 Msa0750250:intron 40.0%
! ATATGGAATGGGGGAACTTT+TGG + chr5_2:3665296-3665315 Msa0750250:CDS 40.0%
AAGCCCTAATCCAAATGATC+AGG + chr5_2:3665366-3665385 Msa0750250:CDS 40.0%
CAGAACCTAACCTGATCATT+TGG - chr5_2:3665379-3665398 None:intergenic 40.0%
TCACTAGAGTCGGATATGTT+TGG + chr5_2:3665532-3665551 Msa0750250:CDS 40.0%
CAATAAAAAGGCAATCTGGC+AGG + chr5_2:3665683-3665702 Msa0750250:intron 40.0%
TCTCTTATGTGTCTAGGGAA+AGG + chr5_2:3665714-3665733 Msa0750250:intron 40.0%
! CTTAGTTAATGAAGGGCGTA+TGG - chr5_2:3665931-3665950 None:intergenic 40.0%
! AGTCGTCTTATTACCACAAG+AGG - chr5_2:3666048-3666067 None:intergenic 40.0%
CATATCACCTCAAATACTCC+AGG - chr5_2:3666309-3666328 None:intergenic 40.0%
! CAGCCTATGCATCATTTTCA+CGG - chr5_2:3666336-3666355 None:intergenic 40.0%
!!! GTTCTGGTTTTCCAAATCTC+TGG + chr5_2:3666401-3666420 Msa0750250:intron 40.0%
TCATTTCAGGACTCCTTTGA+TGG + chr5_2:3666448-3666467 Msa0750250:intron 40.0%
! CTTGCTACTTCTATCAAGTC+AGG - chr5_2:3666497-3666516 None:intergenic 40.0%
GATTCCAGATCTTCCATTGA+AGG + chr5_2:3666629-3666648 Msa0750250:intron 40.0%
GTTGGCATCTTGAAGAAGAT+TGG + chr5_2:3666723-3666742 Msa0750250:CDS 40.0%
! TTGAAGAAGATTGGTCGTGA+CGG + chr5_2:3666732-3666751 Msa0750250:CDS 40.0%
AGAACAGTTGTGGCAATTGA+AGG + chr5_2:3666804-3666823 Msa0750250:CDS 40.0%
ACTGTTGGAACATTAGCTGT+TGG + chr5_2:3665060-3665079 Msa0750250:CDS 40.0%
CTGTTGGAACATTAGCTGTT+GGG + chr5_2:3665061-3665080 Msa0750250:CDS 40.0%
ACTGTTGCTGCAATAGTCAT+TGG + chr5_2:3665102-3665121 Msa0750250:CDS 40.0%
AGGTTGTCAATATGGAATGG+GGG + chr5_2:3665287-3665306 Msa0750250:intron 40.0%
! ATATGGAATGGGGGAACTTT+TGG + chr5_2:3665296-3665315 Msa0750250:CDS 40.0%
AAGCCCTAATCCAAATGATC+AGG + chr5_2:3665366-3665385 Msa0750250:CDS 40.0%
CAGAACCTAACCTGATCATT+TGG - chr5_2:3665379-3665398 None:intergenic 40.0%
TCACTAGAGTCGGATATGTT+TGG + chr5_2:3665532-3665551 Msa0750250:CDS 40.0%
CAATAAAAAGGCAATCTGGC+AGG + chr5_2:3665683-3665702 Msa0750250:intron 40.0%
TCTCTTATGTGTCTAGGGAA+AGG + chr5_2:3665714-3665733 Msa0750250:intron 40.0%
! CTTAGTTAATGAAGGGCGTA+TGG - chr5_2:3665931-3665950 None:intergenic 40.0%
! AGTCGTCTTATTACCACAAG+AGG - chr5_2:3666048-3666067 None:intergenic 40.0%
CATATCACCTCAAATACTCC+AGG - chr5_2:3666309-3666328 None:intergenic 40.0%
! CAGCCTATGCATCATTTTCA+CGG - chr5_2:3666336-3666355 None:intergenic 40.0%
!!! GTTCTGGTTTTCCAAATCTC+TGG + chr5_2:3666401-3666420 Msa0750250:intron 40.0%
TCATTTCAGGACTCCTTTGA+TGG + chr5_2:3666448-3666467 Msa0750250:intron 40.0%
! CTTGCTACTTCTATCAAGTC+AGG - chr5_2:3666497-3666516 None:intergenic 40.0%
GATTCCAGATCTTCCATTGA+AGG + chr5_2:3666629-3666648 Msa0750250:intron 40.0%
GTTGGCATCTTGAAGAAGAT+TGG + chr5_2:3666723-3666742 Msa0750250:CDS 40.0%
! TTGAAGAAGATTGGTCGTGA+CGG + chr5_2:3666732-3666751 Msa0750250:CDS 40.0%
AGAACAGTTGTGGCAATTGA+AGG + chr5_2:3666804-3666823 Msa0750250:CDS 40.0%
ACTATTGCAGCAACAGTGTC+TGG - chr5_2:3665099-3665118 None:intergenic 45.0%
GCTGCAATAGTCATTGGTAC+TGG + chr5_2:3665108-3665127 Msa0750250:CDS 45.0%
TGGTACTAATGCCTGCTACT+TGG + chr5_2:3665128-3665147 Msa0750250:CDS 45.0%
ATCAATTCGCTCCAAGTAGC+AGG - chr5_2:3665142-3665161 None:intergenic 45.0%
CAGGGTCTTCTTACAACATC+AGG + chr5_2:3665177-3665196 Msa0750250:CDS 45.0%
TCTTACAACATCAGGACGCA+TGG + chr5_2:3665185-3665204 Msa0750250:CDS 45.0%
! AACTTTGGTGATTTGGGTGC+AGG + chr5_2:3665444-3665463 Msa0750250:intron 45.0%
! ACTTTGGTGATTTGGGTGCA+GGG + chr5_2:3665445-3665464 Msa0750250:intron 45.0%
TCTCAGGATGTCACTAGAGT+CGG + chr5_2:3665522-3665541 Msa0750250:CDS 45.0%
GGTACAAACCTCAGTACGAA+CGG - chr5_2:3665583-3665602 None:intergenic 45.0%
GGACTCGAACATTTGTTTGC+TGG + chr5_2:3666216-3666235 Msa0750250:intron 45.0%
GCTCCGTGAAAATGATGCAT+AGG + chr5_2:3666330-3666349 Msa0750250:intron 45.0%
AGGTGAATCATCCTCATGCA+TGG - chr5_2:3666477-3666496 None:intergenic 45.0%
AATCCTCAACGACACCTTTG+AGG + chr5_2:3666517-3666536 Msa0750250:CDS 45.0%
!! TTACCTCAAAGGTGTCGTTG+AGG - chr5_2:3666523-3666542 None:intergenic 45.0%
ACAGGAAGGACACCCATTTA+GGG - chr5_2:3666571-3666590 None:intergenic 45.0%
TACAGGAAGGACACCCATTT+AGG - chr5_2:3666572-3666591 None:intergenic 45.0%
CTTGCCTTCAATGGAAGATC+TGG - chr5_2:3666636-3666655 None:intergenic 45.0%
! TGTTGTGAAGGTGTGTGATG+TGG + chr5_2:3666662-3666681 Msa0750250:CDS 45.0%
TTAGCAGCTGCTGGTATTGT+TGG + chr5_2:3666705-3666724 Msa0750250:CDS 45.0%
! TGAAGAAGATTGGTCGTGAC+GGG + chr5_2:3666733-3666752 Msa0750250:CDS 45.0%
ACAGTTGTGGCAATTGAAGG+AGG + chr5_2:3666807-3666826 Msa0750250:CDS 45.0%
AATGTCACCGAAGATGGATC+AGG + chr5_2:3666921-3666940 Msa0750250:CDS 45.0%
ACTATTGCAGCAACAGTGTC+TGG - chr5_2:3665099-3665118 None:intergenic 45.0%
GCTGCAATAGTCATTGGTAC+TGG + chr5_2:3665108-3665127 Msa0750250:CDS 45.0%
TGGTACTAATGCCTGCTACT+TGG + chr5_2:3665128-3665147 Msa0750250:CDS 45.0%
ATCAATTCGCTCCAAGTAGC+AGG - chr5_2:3665142-3665161 None:intergenic 45.0%
CAGGGTCTTCTTACAACATC+AGG + chr5_2:3665177-3665196 Msa0750250:CDS 45.0%
TCTTACAACATCAGGACGCA+TGG + chr5_2:3665185-3665204 Msa0750250:CDS 45.0%
! AACTTTGGTGATTTGGGTGC+AGG + chr5_2:3665444-3665463 Msa0750250:intron 45.0%
! ACTTTGGTGATTTGGGTGCA+GGG + chr5_2:3665445-3665464 Msa0750250:intron 45.0%
TCTCAGGATGTCACTAGAGT+CGG + chr5_2:3665522-3665541 Msa0750250:CDS 45.0%
GGTACAAACCTCAGTACGAA+CGG - chr5_2:3665583-3665602 None:intergenic 45.0%
GGACTCGAACATTTGTTTGC+TGG + chr5_2:3666216-3666235 Msa0750250:intron 45.0%
GCTCCGTGAAAATGATGCAT+AGG + chr5_2:3666330-3666349 Msa0750250:intron 45.0%
AGGTGAATCATCCTCATGCA+TGG - chr5_2:3666477-3666496 None:intergenic 45.0%
AATCCTCAACGACACCTTTG+AGG + chr5_2:3666517-3666536 Msa0750250:CDS 45.0%
!! TTACCTCAAAGGTGTCGTTG+AGG - chr5_2:3666523-3666542 None:intergenic 45.0%
ACAGGAAGGACACCCATTTA+GGG - chr5_2:3666571-3666590 None:intergenic 45.0%
TACAGGAAGGACACCCATTT+AGG - chr5_2:3666572-3666591 None:intergenic 45.0%
CTTGCCTTCAATGGAAGATC+TGG - chr5_2:3666636-3666655 None:intergenic 45.0%
! TGTTGTGAAGGTGTGTGATG+TGG + chr5_2:3666662-3666681 Msa0750250:CDS 45.0%
TTAGCAGCTGCTGGTATTGT+TGG + chr5_2:3666705-3666724 Msa0750250:CDS 45.0%
! TGAAGAAGATTGGTCGTGAC+GGG + chr5_2:3666733-3666752 Msa0750250:CDS 45.0%
ACAGTTGTGGCAATTGAAGG+AGG + chr5_2:3666807-3666826 Msa0750250:CDS 45.0%
AATGTCACCGAAGATGGATC+AGG + chr5_2:3666921-3666940 Msa0750250:CDS 45.0%
TGTATCTCGGTGACATCGTG+AGG + chr5_2:3665491-3665510 Msa0750250:CDS 50.0%
TCGTGAGGAGAGTCATTCTC+AGG + chr5_2:3665506-3665525 Msa0750250:CDS 50.0%
TTTCAACGCCGTTCGTACTG+AGG + chr5_2:3665572-3665591 Msa0750250:CDS 50.0%
TCATGCATGGCAGCCATCAA+AGG - chr5_2:3666464-3666483 None:intergenic 50.0%
! TTTGATGGCTGCCATGCATG+AGG + chr5_2:3666463-3666482 Msa0750250:CDS 50.0%
TGTGTGATGTGGTGACTCGA+AGG + chr5_2:3666673-3666692 Msa0750250:CDS 50.0%
GTGTGATGTGGTGACTCGAA+GGG + chr5_2:3666674-3666693 Msa0750250:CDS 50.0%
ACCGAAGATGGATCAGGCAT+TGG + chr5_2:3666927-3666946 Msa0750250:CDS 50.0%
CCCAATGCCTGATCCATCTT+CGG - chr5_2:3666931-3666950 None:intergenic 50.0%
CCGAAGATGGATCAGGCATT+GGG + chr5_2:3666928-3666947 Msa0750250:CDS 50.0%
! CGAAGATGGATCAGGCATTG+GGG + chr5_2:3666929-3666948 Msa0750250:CDS 50.0%
TGTATCTCGGTGACATCGTG+AGG + chr5_2:3665491-3665510 Msa0750250:CDS 50.0%
TCGTGAGGAGAGTCATTCTC+AGG + chr5_2:3665506-3665525 Msa0750250:CDS 50.0%
TTTCAACGCCGTTCGTACTG+AGG + chr5_2:3665572-3665591 Msa0750250:CDS 50.0%
TCATGCATGGCAGCCATCAA+AGG - chr5_2:3666464-3666483 None:intergenic 50.0%
! TTTGATGGCTGCCATGCATG+AGG + chr5_2:3666463-3666482 Msa0750250:CDS 50.0%
TGTGTGATGTGGTGACTCGA+AGG + chr5_2:3666673-3666692 Msa0750250:CDS 50.0%
GTGTGATGTGGTGACTCGAA+GGG + chr5_2:3666674-3666693 Msa0750250:CDS 50.0%
ACCGAAGATGGATCAGGCAT+TGG + chr5_2:3666927-3666946 Msa0750250:CDS 50.0%
CCCAATGCCTGATCCATCTT+CGG - chr5_2:3666931-3666950 None:intergenic 50.0%
CCGAAGATGGATCAGGCATT+GGG + chr5_2:3666928-3666947 Msa0750250:CDS 50.0%
! CGAAGATGGATCAGGCATTG+GGG + chr5_2:3666929-3666948 Msa0750250:CDS 50.0%
! AAGATTGGTCGTGACGGGAG+TGG + chr5_2:3666738-3666757 Msa0750250:CDS 55.0%
! AAGATTGGTCGTGACGGGAG+TGG + chr5_2:3666738-3666757 Msa0750250:CDS 55.0%
GCTGCTCGATTAGCAGCTGC+TGG + chr5_2:3666696-3666715 Msa0750250:CDS 60.0%
! ATTGGTCGTGACGGGAGTGG+TGG + chr5_2:3666741-3666760 Msa0750250:CDS 60.0%
GTGGTGGCATCACAGGTGGA+CGG + chr5_2:3666757-3666776 Msa0750250:CDS 60.0%
GCATCACAGGTGGACGGAGT+AGG + chr5_2:3666763-3666782 Msa0750250:CDS 60.0%
GCTGCTCGATTAGCAGCTGC+TGG + chr5_2:3666696-3666715 Msa0750250:CDS 60.0%
! ATTGGTCGTGACGGGAGTGG+TGG + chr5_2:3666741-3666760 Msa0750250:CDS 60.0%
GTGGTGGCATCACAGGTGGA+CGG + chr5_2:3666757-3666776 Msa0750250:CDS 60.0%
GCATCACAGGTGGACGGAGT+AGG + chr5_2:3666763-3666782 Msa0750250:CDS 60.0%
GACGGGAGTGGTGGCATCAC+AGG + chr5_2:3666750-3666769 Msa0750250:CDS 65.0%
GGGAGTGGTGGCATCACAGG+TGG + chr5_2:3666753-3666772 Msa0750250:CDS 65.0%
GACGGGAGTGGTGGCATCAC+AGG + chr5_2:3666750-3666769 Msa0750250:CDS 65.0%
GGGAGTGGTGGCATCACAGG+TGG + chr5_2:3666753-3666772 Msa0750250:CDS 65.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3665051 3666980 3665051 ID=Msa0750250;Name=Msa0750250
chr5_2 mRNA 3665051 3666980 3665051 ID=Msa0750250-mRNA-1;Parent=Msa0750250;Name=Msa0750250-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|0|0|1|1|1|5|0|271
chr5_2 exon 3665051 3665206 3665051 ID=Msa0750250-mRNA-1:exon:1347;Parent=Msa0750250-mRNA-1
chr5_2 exon 3665289 3665387 3665289 ID=Msa0750250-mRNA-1:exon:1348;Parent=Msa0750250-mRNA-1
chr5_2 exon 3665466 3665593 3665466 ID=Msa0750250-mRNA-1:exon:1349;Parent=Msa0750250-mRNA-1
chr5_2 exon 3666457 3666538 3666457 ID=Msa0750250-mRNA-1:exon:1350;Parent=Msa0750250-mRNA-1
chr5_2 exon 3666630 3666980 3666630 ID=Msa0750250-mRNA-1:exon:1351;Parent=Msa0750250-mRNA-1
chr5_2 CDS 3665051 3665206 3665051 ID=Msa0750250-mRNA-1:cds;Parent=Msa0750250-mRNA-1
chr5_2 CDS 3665289 3665387 3665289 ID=Msa0750250-mRNA-1:cds;Parent=Msa0750250-mRNA-1
chr5_2 CDS 3665466 3665593 3665466 ID=Msa0750250-mRNA-1:cds;Parent=Msa0750250-mRNA-1
chr5_2 CDS 3666457 3666538 3666457 ID=Msa0750250-mRNA-1:cds;Parent=Msa0750250-mRNA-1
chr5_2 CDS 3666630 3666980 3666630 ID=Msa0750250-mRNA-1:cds;Parent=Msa0750250-mRNA-1
Gene Sequence

>Msa0750250

GTTAATGATACTGTTGGAACATTAGCTGTTGGGCATTATCATGATCCAGACACTGTTGCTGCAATAGTCATTGGTACTGGTACTAATGCCTGCTACTTGGAGCGAATTGATGCTATTATCAAGTGTCAGGGTCTTCTTACAACATCAGGACGCATGGTTGTCAATATGGAATGGGGGAACTTTTGGTCGTCTCATTTACCAAGAACACAGTATGACATTGAATTAGATGCTGAAAGCCCTAATCCAAATGATCAGGGTTTTGAGAAAATGATATCAGGAATGTATCTCGGTGACATCGTGAGGAGAGTCATTCTCAGGATGTCACTAGAGTCGGATATGTTTGGACCTATTTCTTCGAAGCTTTCAACGCCGTTCGTACTGAGGACTCCTTTGATGGCTGCCATGCATGAGGATGATTCACCTGACTTGATAGAAGTAGCAAGAATCCTCAACGACACCTTTGAGATTCCAGATCTTCCATTGAAGGCAAGAAAAATTGTTGTGAAGGTGTGTGATGTGGTGACTCGAAGGGCTGCTCGATTAGCAGCTGCTGGTATTGTTGGCATCTTGAAGAAGATTGGTCGTGACGGGAGTGGTGGCATCACAGGTGGACGGAGTAGGAGTGATATAAAAATGAAAAGAACAGTTGTGGCAATTGAAGGAGGATTATACTCGAGCTATACATTGTTTAGAGAGTACTTGCATGAAGCTTTAAACGAAATATTGGGGGAAGATATTGCTAAGCATGTAATTCTTAATGTCACCGAAGATGGATCAGGCATTGGGGCTGCATTGCTAGCTGCATCATATTCTTAA

Protein sequence

>Msa0750250

VNDTVGTLAVGHYHDPDTVAAIVIGTGTNACYLERIDAIIKCQGLLTTSGRMVVNMEWGNFWSSHLPRTQYDIELDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSLESDMFGPISSKLSTPFVLRTPLMAAMHEDDSPDLIEVARILNDTFEIPDLPLKARKIVVKVCDVVTRRAARLAAAGIVGILKKIGRDGSGGITGGRSRSDIKMKRTVVAIEGGLYSSYTLFREYLHEALNEILGEDIAKHVILNVTEDGSGIGAALLAASYS*