AlfalfaGEDB | Msa0750250

M. sativa cultivar zhongmu-4 / Msa0750250

KEGG: K00844
GO: GO:0001678 GO:0003674 GO:0003824 GO:0004340 GO:0004396 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005740 GO:0005741 GO:0005829 GO:0005975 GO:0006082 GO:0006090 GO:0006091 GO:0006096 GO:0006139 GO:0006163 GO:0006164 GO:0006165 GO:0006725 GO:0006732 GO:0006733 GO:0006753 GO:0006754 GO:0006757 GO:0006793 GO:0006796 GO:0006807 GO:0006950 GO:0006970 GO:0007275 GO:0008150 GO:0008152 GO:0008865 GO:0009056 GO:0009058 GO:0009108 GO:0009117 GO:0009123 GO:0009124 GO:0009126 GO:0009127 GO:0009132 GO:0009135 GO:0009141 GO:0009142 GO:0009144 GO:0009145 GO:0009150 GO:0009152 GO:0009156 GO:0009161 GO:0009165 GO:0009166 GO:0009167 GO:0009168 GO:0009179 GO:0009185 GO:0009199 GO:0009201 GO:0009205 GO:0009206 GO:0009259 GO:0009260 GO:0009266 GO:0009409 GO:0009536 GO:0009628 GO:0009651 GO:0009653 GO:0009888 GO:0009987 GO:0010015 GO:0010053 GO:0010054 GO:0016020 GO:0016021 GO:0016052 GO:0016053 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0017144 GO:0018130 GO:0019158 GO:0019200 GO:0019359 GO:0019362 GO:0019363 GO:0019438 GO:0019439 GO:0019637 GO:0019693 GO:0019725 GO:0019752 GO:0019867 GO:0021700 GO:0022622 GO:0030154 GO:0031090 GO:0031224 GO:0031300 GO:0031301 GO:0031306 GO:0031307 GO:0031966 GO:0031967 GO:0031968 GO:0031975 GO:0032501 GO:0032502 GO:0032592 GO:0032787 GO:0033500 GO:0034404 GO:0034641 GO:0034654 GO:0034655 GO:0042592 GO:0042593 GO:0042866 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043436 GO:0044237 GO:0044238 GO:0044248 GO:0044249 GO:0044262 GO:0044270 GO:0044271 GO:0044281 GO:0044283 GO:0044422 GO:0044424 GO:0044425 GO:0044429 GO:0044444 GO:0044446 GO:0044455 GO:0044464 GO:0046031 GO:0046034 GO:0046390 GO:0046394 GO:0046434 GO:0046483 GO:0046496 GO:0046700 GO:0046835 GO:0046939 GO:0048364 GO:0048468 GO:0048469 GO:0048731 GO:0048764 GO:0048765 GO:0048856 GO:0048869 GO:0048878 GO:0050896 GO:0051156 GO:0051186 GO:0051188 GO:0055082 GO:0055086 GO:0065007 GO:0065008 GO:0071695 GO:0071704 GO:0072330 GO:0072521 GO:0072522 GO:0072524 GO:0072525 GO:0080147 GO:0090407 GO:0090558 GO:0090627 GO:0098573 GO:0098588 GO:0098805 GO:0099402 GO:1901135 GO:1901137 GO:1901292 GO:1901293 GO:1901360 GO:1901361 GO:1901362 GO:1901564 GO:1901566 GO:1901575 GO:1901576 GO:1905392
PFAM: PF03727.19

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0750250	sp\|Q9LPS1\|HXK3_ARATH	75.556	270	64	2	1	269	227	495	9.20e-147	423

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0750250	G7K998	98.893	271	3	0	1	271	226	496	0.0	550

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0002560	Msa0750250	0.836699	8.029925e-57	-8.615850e-47
Msa0002680	Msa0750250	0.855725	5.203608e-62	-8.615850e-47
Msa0002710	Msa0750250	0.834880	2.320432e-56	-8.615850e-47
Msa0003220	Msa0750250	0.829281	5.620085e-55	-8.615850e-47
Msa0005620	Msa0750250	0.813155	2.952652e-51	-8.615850e-47
Msa0007990	Msa0750250	0.824742	6.845253e-54	-8.615850e-47
Msa0008220	Msa0750250	0.823178	1.593302e-53	-8.615850e-47
Msa0010770	Msa0750250	0.865978	3.989712e-65	-8.615850e-47
Msa0011930	Msa0750250	0.813279	2.773818e-51	-8.615850e-47
Msa0012710	Msa0750250	0.827429	1.572219e-54	-8.615850e-47

Showing 1 to 10 of 940 entries

Previous1 2 3 4 5…94Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0750250	MtrunA17_Chr5g0396421	98.893	271	3	0	1	271	226	496	0.0	550
Msa0750250	MtrunA17_Chr8g0389821	55.147	272	112	3	1	271	228	490	6.17e-100	301
Msa0750250	MtrunA17_Chr8g0340741	55.147	272	112	3	1	271	227	489	1.97e-95	289
Msa0750250	MtrunA17_Chr6g0487071	52.206	272	120	2	1	271	226	488	7.20e-94	285
Msa0750250	MtrunA17_Chr1g0156571	49.265	272	126	4	1	271	230	490	2.34e-81	253
Msa0750250	MtrunA17_Chr4g0054541	49.045	157	77	2	1	156	5	159	7.18e-44	146

Showing 1 to 6 of 6 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0750250	AT1G50460.3	75.556	270	64	2	1	269	151	419	8.18e-149	423
Msa0750250	AT1G50460.1	75.556	270	64	2	1	269	227	495	9.35e-148	423
Msa0750250	AT3G20040.1	71.747	269	72	2	1	269	228	492	1.45e-123	362
Msa0750250	AT2G19860.2	52.941	272	118	2	1	271	119	381	4.44e-97	290
Msa0750250	AT4G29130.1	53.309	272	117	2	1	271	228	490	4.71e-97	293
Msa0750250	AT2G19860.1	52.941	272	118	2	1	271	228	490	9.07e-96	290
Msa0750250	AT1G47840.1	48.551	276	121	6	1	271	232	491	6.32e-77	242
Msa0750250	AT1G50460.2	82.812	128	22	0	1	128	227	354	7.76e-74	230
Msa0750250	AT4G37840.1	47.212	269	127	2	1	268	228	482	5.37e-71	226
Msa0750250	AT1G47845.1	45.890	146	75	3	52	195	40	183	8.02e-37	129

Showing 1 to 10 of 11 entries

Previous1 2Next

Find 65 sgRNAs with CRISPR-Local

Find 276 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAGATTGGTCGTGACGGGAG+TGG	0.556777	5_2:+3666738	Msa0750250:CDS
AAGCAGGTTAATGATACTGT+TGG	0.489212	5_2:+3665045	None:intergenic
AAGCCCTAATCCAAATGATC+AGG	0.491358	5_2:+3665366	Msa0750250:CDS
AAGCTTTAAACGAAATATTG+GGG	0.554190	5_2:+3666871	Msa0750250:CDS
AATCCTCAACGACACCTTTG+AGG	0.459020	5_2:+3666517	Msa0750250:CDS
AATGTCACCGAAGATGGATC+AGG	0.512205	5_2:+3666921	Msa0750250:CDS
ACAGTTGTGGCAATTGAAGG+AGG	0.611717	5_2:+3666807	Msa0750250:CDS
ACCGAAGATGGATCAGGCAT+TGG	0.478914	5_2:+3666927	Msa0750250:CDS
ACTATTGCAGCAACAGTGTC+TGG	0.403276	5_2:-3665096	None:intergenic
ACTGTTGCTGCAATAGTCAT+TGG	0.514702	5_2:+3665102	Msa0750250:CDS

Showing 1 to 10 of 65 entries

Previous1 2 3 4 5 6 7Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CATATTGACAACCTAAAAGA+CGG	-	chr5_2:3665281-3665300	None:intergenic	30.0%
TAACCTGATCATTTGGATTA+GGG	-	chr5_2:3665372-3665391	None:intergenic	30.0%
ATCAAGCAACAAAAGTCATT+AGG	-	chr5_2:3665404-3665423	None:intergenic	30.0%
ATGATATCAGGAATGTATCT+CGG	+	chr5_2:3665478-3665497	Msa0750250:CDS	30.0%
TATGTATGACCAATGTCTTT+AGG	+	chr5_2:3665620-3665639	Msa0750250:intron	30.0%
GGAAAACATACTTGATACTA+TGG	+	chr5_2:3665641-3665660	Msa0750250:intron	30.0%
ATTGAATAACAGAACACATC+TGG	-	chr5_2:3665667-3665686	None:intergenic	30.0%
ATCTTGGTTATACAAAGCAT+TGG	+	chr5_2:3665771-3665790	Msa0750250:intron	30.0%
TATGTTTCATGCACTACAAT+TGG	-	chr5_2:3665990-3666009	None:intergenic	30.0%
ATCAAAACAAGAAAAGCCAA+AGG	-	chr5_2:3666171-3666190	None:intergenic	30.0%

Showing 1 to 10 of 276 entries

Previous1 2 3 4 5…28Next

Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	3665051	3666980	3665051	ID=Msa0750250;Name=Msa0750250
chr5_2	mRNA	3665051	3666980	3665051	ID=Msa0750250-mRNA-1;Parent=Msa0750250;Name=Msa0750250-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0\|0\|0\|1\|1\|1\|5\|0\|271
chr5_2	exon	3665051	3665206	3665051	ID=Msa0750250-mRNA-1:exon:1347;Parent=Msa0750250-mRNA-1
chr5_2	exon	3665289	3665387	3665289	ID=Msa0750250-mRNA-1:exon:1348;Parent=Msa0750250-mRNA-1
chr5_2	exon	3665466	3665593	3665466	ID=Msa0750250-mRNA-1:exon:1349;Parent=Msa0750250-mRNA-1
chr5_2	exon	3666457	3666538	3666457	ID=Msa0750250-mRNA-1:exon:1350;Parent=Msa0750250-mRNA-1
chr5_2	exon	3666630	3666980	3666630	ID=Msa0750250-mRNA-1:exon:1351;Parent=Msa0750250-mRNA-1
chr5_2	CDS	3665051	3665206	3665051	ID=Msa0750250-mRNA-1:cds;Parent=Msa0750250-mRNA-1
chr5_2	CDS	3665289	3665387	3665289	ID=Msa0750250-mRNA-1:cds;Parent=Msa0750250-mRNA-1
chr5_2	CDS	3665466	3665593	3665466	ID=Msa0750250-mRNA-1:cds;Parent=Msa0750250-mRNA-1
chr5_2	CDS	3666457	3666538	3666457	ID=Msa0750250-mRNA-1:cds;Parent=Msa0750250-mRNA-1
chr5_2	CDS	3666630	3666980	3666630	ID=Msa0750250-mRNA-1:cds;Parent=Msa0750250-mRNA-1

Gene Sequence

>Msa0750250

GTTAATGATACTGTTGGAACATTAGCTGTTGGGCATTATCATGATCCAGACACTGTTGCTGCAATAGTCATTGGTACTGGTACTAATGCCTGCTACTTGGAGCGAATTGATGCTATTATCAAGTGTCAGGGTCTTCTTACAACATCAGGACGCATGGTTGTCAATATGGAATGGGGGAACTTTTGGTCGTCTCATTTACCAAGAACACAGTATGACATTGAATTAGATGCTGAAAGCCCTAATCCAAATGATCAGGGTTTTGAGAAAATGATATCAGGAATGTATCTCGGTGACATCGTGAGGAGAGTCATTCTCAGGATGTCACTAGAGTCGGATATGTTTGGACCTATTTCTTCGAAGCTTTCAACGCCGTTCGTACTGAGGACTCCTTTGATGGCTGCCATGCATGAGGATGATTCACCTGACTTGATAGAAGTAGCAAGAATCCTCAACGACACCTTTGAGATTCCAGATCTTCCATTGAAGGCAAGAAAAATTGTTGTGAAGGTGTGTGATGTGGTGACTCGAAGGGCTGCTCGATTAGCAGCTGCTGGTATTGTTGGCATCTTGAAGAAGATTGGTCGTGACGGGAGTGGTGGCATCACAGGTGGACGGAGTAGGAGTGATATAAAAATGAAAAGAACAGTTGTGGCAATTGAAGGAGGATTATACTCGAGCTATACATTGTTTAGAGAGTACTTGCATGAAGCTTTAAACGAAATATTGGGGGAAGATATTGCTAAGCATGTAATTCTTAATGTCACCGAAGATGGATCAGGCATTGGGGCTGCATTGCTAGCTGCATCATATTCTTAA

Protein sequence

>Msa0750250

VNDTVGTLAVGHYHDPDTVAAIVIGTGTNACYLERIDAIIKCQGLLTTSGRMVVNMEWGNFWSSHLPRTQYDIELDAESPNPNDQGFEKMISGMYLGDIVRRVILRMSLESDMFGPISSKLSTPFVLRTPLMAAMHEDDSPDLIEVARILNDTFEIPDLPLKARKIVVKVCDVVTRRAARLAAAGIVGILKKIGRDGSGGITGGRSRSDIKMKRTVVAIEGGLYSSYTLFREYLHEALNEILGEDIAKHVILNVTEDGSGIGAALLAASYS*