Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527130 | KEH35748.1 | 93.871 | 310 | 19 | 0 | 1 | 310 | 1 | 310 | 0.0 | 588 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527130 | sp|Q9FX08|P2C12_ARATH | 73.955 | 311 | 79 | 1 | 1 | 311 | 1 | 309 | 3.08e-169 | 479 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527130 | A0A072V316 | 93.871 | 310 | 19 | 0 | 1 | 310 | 1 | 310 | 0.0 | 588 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0044510 | Msa0527130 | 0.838930 | 2.146470e-57 | -8.615850e-47 |
| Msa0138090 | Msa0527130 | 0.868387 | 6.781379e-66 | -8.615850e-47 |
| Msa0172320 | Msa0527130 | 0.888564 | 5.278869e-73 | -8.615850e-47 |
| Msa0429980 | Msa0527130 | 0.957553 | 2.055918e-115 | -8.615850e-47 |
| Msa0467570 | Msa0527130 | 0.814508 | 1.486611e-51 | -8.615850e-47 |
| Msa0336700 | Msa0527130 | 0.802580 | 5.243496e-49 | -8.615850e-47 |
| Msa0500640 | Msa0527130 | 0.953604 | 1.899442e-111 | -8.615850e-47 |
| Msa0500660 | Msa0527130 | 0.968919 | 2.291308e-129 | -8.615850e-47 |
| Msa0526650 | Msa0527130 | 0.886594 | 2.986803e-72 | -8.615850e-47 |
| Msa0526760 | Msa0527130 | 0.874433 | 6.781627e-68 | -8.615850e-47 |
| Msa0527130 | Msa0712020 | 0.808414 | 3.134489e-50 | -8.615850e-47 |
| Msa0527130 | Msa1366370 | 0.831003 | 2.135005e-55 | -8.615850e-47 |
| Msa0527130 | Msa1390250 | 0.884062 | 2.641761e-71 | -8.615850e-47 |
| Msa0527130 | Msa1422020 | 0.819975 | 8.758229e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527130 | MtrunA17_Chr3g0133801 | 93.871 | 310 | 19 | 0 | 1 | 310 | 1 | 310 | 0.0 | 587 |
| Msa0527130 | MtrunA17_Chr1g0153671 | 79.100 | 311 | 62 | 2 | 1 | 310 | 1 | 309 | 4.45e-179 | 501 |
| Msa0527130 | MtrunA17_Chr1g0209451 | 62.500 | 312 | 112 | 3 | 3 | 311 | 6 | 315 | 3.48e-138 | 397 |
| Msa0527130 | MtrunA17_Chr7g0271971 | 60.403 | 298 | 116 | 1 | 4 | 301 | 8 | 303 | 1.15e-122 | 358 |
| Msa0527130 | MtrunA17_Chr1g0192471 | 58.746 | 303 | 123 | 1 | 4 | 306 | 8 | 308 | 9.35e-121 | 353 |
| Msa0527130 | MtrunA17_Chr7g0225501 | 58.900 | 309 | 109 | 9 | 10 | 310 | 32 | 330 | 2.02e-105 | 315 |
| Msa0527130 | MtrunA17_Chr2g0326251 | 45.972 | 211 | 98 | 8 | 107 | 311 | 7 | 207 | 5.73e-48 | 160 |
| Msa0527130 | MtrunA17_Chr1g0150451 | 30.204 | 245 | 145 | 8 | 66 | 304 | 108 | 332 | 1.26e-26 | 107 |
| Msa0527130 | MtrunA17_Chr3g0105351 | 27.984 | 243 | 152 | 9 | 60 | 295 | 88 | 314 | 1.56e-25 | 103 |
| Msa0527130 | MtrunA17_Chr3g0105371 | 28.980 | 245 | 147 | 10 | 60 | 295 | 112 | 338 | 4.19e-25 | 103 |
| Msa0527130 | MtrunA17_Chr3g0136711 | 28.400 | 250 | 153 | 8 | 66 | 309 | 65 | 294 | 6.55e-25 | 101 |
| Msa0527130 | MtrunA17_Chr1g0212961 | 31.752 | 274 | 153 | 15 | 32 | 298 | 94 | 340 | 5.22e-24 | 100 |
| Msa0527130 | MtrunA17_Chr5g0430481 | 28.980 | 245 | 147 | 10 | 60 | 295 | 148 | 374 | 3.18e-23 | 98.6 |
| Msa0527130 | MtrunA17_Chr4g0070871 | 28.626 | 262 | 142 | 7 | 67 | 295 | 254 | 503 | 1.38e-22 | 97.8 |
| Msa0527130 | MtrunA17_Chr1g0150781 | 30.496 | 282 | 124 | 11 | 67 | 300 | 291 | 548 | 4.33e-21 | 93.6 |
| Msa0527130 | MtrunA17_Chr3g0126511 | 29.044 | 272 | 159 | 9 | 44 | 308 | 108 | 352 | 9.01e-21 | 91.3 |
| Msa0527130 | MtrunA17_Chr2g0317021 | 29.362 | 235 | 142 | 10 | 66 | 295 | 117 | 332 | 2.85e-20 | 89.7 |
| Msa0527130 | MtrunA17_Chr8g0360351 | 32.766 | 235 | 130 | 13 | 66 | 293 | 66 | 279 | 7.21e-20 | 87.4 |
| Msa0527130 | MtrunA17_Chr3g0135961 | 28.070 | 285 | 141 | 9 | 63 | 303 | 283 | 547 | 6.55e-19 | 87.0 |
| Msa0527130 | MtrunA17_Chr1g0171571 | 29.719 | 249 | 136 | 8 | 67 | 297 | 419 | 646 | 1.70e-18 | 85.9 |
| Msa0527130 | MtrunA17_Chr1g0158781 | 29.555 | 247 | 143 | 7 | 67 | 295 | 146 | 379 | 3.73e-18 | 84.0 |
| Msa0527130 | MtrunA17_Chr3g0138281 | 27.715 | 267 | 154 | 9 | 59 | 309 | 116 | 359 | 7.44e-17 | 80.5 |
| Msa0527130 | MtrunA17_Chr8g0389921 | 25.660 | 265 | 164 | 8 | 61 | 303 | 193 | 446 | 9.12e-17 | 80.5 |
| Msa0527130 | MtrunA17_Chr4g0051661 | 30.213 | 235 | 135 | 10 | 66 | 293 | 183 | 395 | 3.20e-16 | 78.6 |
| Msa0527130 | MtrunA17_Chr4g0065141 | 27.273 | 275 | 154 | 11 | 57 | 311 | 117 | 365 | 4.95e-16 | 77.8 |
| Msa0527130 | MtrunA17_Chr5g0407161 | 24.000 | 250 | 157 | 7 | 65 | 302 | 123 | 351 | 1.51e-15 | 76.6 |
| Msa0527130 | MtrunA17_Chr6g0483411 | 27.239 | 268 | 151 | 10 | 56 | 293 | 63 | 316 | 2.01e-15 | 75.5 |
| Msa0527130 | MtrunA17_Chr2g0299981 | 24.348 | 345 | 175 | 12 | 13 | 300 | 225 | 540 | 8.16e-15 | 74.7 |
| Msa0527130 | MtrunA17_Chr2g0279151 | 27.039 | 233 | 146 | 9 | 66 | 293 | 65 | 278 | 9.55e-15 | 73.2 |
| Msa0527130 | MtrunA17_Chr4g0050381 | 26.496 | 234 | 146 | 9 | 66 | 293 | 61 | 274 | 4.12e-14 | 71.2 |
| Msa0527130 | MtrunA17_Chr5g0396731 | 27.803 | 223 | 138 | 6 | 64 | 277 | 105 | 313 | 4.80e-14 | 72.0 |
| Msa0527130 | MtrunA17_Chr1g0194191 | 26.515 | 264 | 160 | 11 | 65 | 309 | 117 | 365 | 5.38e-14 | 72.0 |
| Msa0527130 | MtrunA17_Chr5g0426141 | 28.085 | 235 | 141 | 10 | 66 | 293 | 66 | 279 | 7.43e-14 | 70.5 |
| Msa0527130 | MtrunA17_Chr3g0115851 | 26.496 | 234 | 146 | 9 | 66 | 293 | 66 | 279 | 2.58e-13 | 68.9 |
| Msa0527130 | MtrunA17_Chr2g0295401 | 26.667 | 270 | 162 | 11 | 68 | 302 | 94 | 362 | 1.14e-11 | 64.7 |
| Msa0527130 | MtrunA17_Chr4g0067711 | 27.830 | 212 | 131 | 10 | 109 | 300 | 150 | 359 | 4.90e-11 | 62.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0527130 | AT1G47380.1 | 73.955 | 311 | 79 | 1 | 1 | 311 | 1 | 309 | 3.13e-170 | 479 |
| Msa0527130 | AT1G68410.4 | 60.197 | 304 | 116 | 2 | 10 | 310 | 19 | 320 | 1.65e-132 | 384 |
| Msa0527130 | AT1G68410.3 | 60.197 | 304 | 116 | 2 | 10 | 310 | 19 | 320 | 1.65e-132 | 384 |
| Msa0527130 | AT1G68410.1 | 60.197 | 304 | 116 | 2 | 10 | 310 | 19 | 320 | 1.65e-132 | 384 |
| Msa0527130 | AT1G68410.2 | 60.197 | 304 | 116 | 2 | 10 | 310 | 19 | 320 | 1.65e-132 | 384 |
| Msa0527130 | AT1G09160.2 | 62.838 | 296 | 108 | 1 | 2 | 297 | 6 | 299 | 2.31e-131 | 380 |
| Msa0527130 | AT1G09160.1 | 62.838 | 296 | 108 | 1 | 2 | 297 | 6 | 299 | 2.31e-131 | 380 |
| Msa0527130 | AT5G53140.1 | 29.961 | 257 | 147 | 8 | 44 | 293 | 115 | 345 | 1.63e-24 | 102 |
| Msa0527130 | AT5G53140.2 | 29.961 | 257 | 147 | 8 | 44 | 293 | 115 | 345 | 1.63e-24 | 102 |
| Msa0527130 | AT4G26080.1 | 29.455 | 275 | 149 | 7 | 59 | 300 | 165 | 427 | 1.02e-23 | 100 |
| Msa0527130 | AT4G31750.2 | 28.750 | 240 | 145 | 8 | 66 | 299 | 64 | 283 | 1.30e-23 | 98.6 |
| Msa0527130 | AT4G31750.1 | 28.750 | 240 | 145 | 8 | 66 | 299 | 64 | 283 | 1.33e-23 | 99.0 |
| Msa0527130 | AT4G31750.3 | 28.750 | 240 | 145 | 8 | 66 | 299 | 64 | 283 | 1.33e-23 | 99.0 |
| Msa0527130 | AT1G43900.1 | 31.064 | 235 | 135 | 9 | 65 | 293 | 153 | 366 | 2.05e-23 | 99.4 |
| Msa0527130 | AT2G34740.1 | 29.961 | 257 | 153 | 9 | 44 | 296 | 102 | 335 | 2.40e-23 | 98.6 |
| Msa0527130 | AT1G07160.1 | 31.933 | 238 | 138 | 9 | 29 | 263 | 121 | 337 | 3.08e-23 | 99.0 |
| Msa0527130 | AT5G57050.2 | 30.038 | 263 | 138 | 8 | 67 | 295 | 121 | 371 | 6.10e-23 | 98.2 |
| Msa0527130 | AT5G10740.1 | 29.091 | 275 | 155 | 12 | 34 | 296 | 34 | 280 | 6.35e-23 | 97.8 |
| Msa0527130 | AT5G10740.2 | 29.091 | 275 | 155 | 12 | 34 | 296 | 34 | 280 | 6.35e-23 | 97.8 |
| Msa0527130 | AT5G24940.1 | 28.992 | 238 | 141 | 9 | 66 | 296 | 64 | 280 | 8.26e-23 | 98.6 |
| Msa0527130 | AT5G57050.1 | 30.038 | 263 | 138 | 8 | 67 | 295 | 161 | 411 | 8.94e-23 | 98.2 |
| Msa0527130 | AT1G78200.5 | 29.787 | 235 | 140 | 9 | 66 | 293 | 19 | 235 | 2.85e-22 | 93.6 |
| Msa0527130 | AT1G78200.4 | 29.787 | 235 | 140 | 9 | 66 | 293 | 19 | 235 | 2.85e-22 | 93.6 |
| Msa0527130 | AT2G40180.1 | 28.571 | 245 | 154 | 8 | 59 | 295 | 154 | 385 | 7.71e-22 | 95.1 |
| Msa0527130 | AT1G78200.1 | 29.487 | 234 | 142 | 8 | 66 | 293 | 64 | 280 | 8.17e-22 | 93.2 |
| Msa0527130 | AT1G78200.3 | 29.487 | 234 | 142 | 8 | 66 | 293 | 64 | 280 | 8.17e-22 | 93.2 |
| Msa0527130 | AT1G78200.2 | 29.487 | 234 | 142 | 8 | 66 | 293 | 64 | 280 | 8.17e-22 | 93.2 |
| Msa0527130 | AT1G67820.2 | 29.778 | 225 | 144 | 4 | 60 | 284 | 109 | 319 | 6.27e-21 | 92.8 |
| Msa0527130 | AT1G67820.1 | 29.778 | 225 | 144 | 4 | 60 | 284 | 145 | 355 | 7.67e-21 | 92.8 |
| Msa0527130 | AT4G28400.3 | 29.185 | 233 | 141 | 9 | 66 | 293 | 45 | 258 | 1.41e-20 | 89.7 |
| Msa0527130 | AT4G28400.1 | 29.185 | 233 | 141 | 9 | 66 | 293 | 67 | 280 | 2.37e-20 | 89.4 |
| Msa0527130 | AT1G22280.3 | 28.326 | 233 | 149 | 8 | 66 | 293 | 65 | 284 | 1.26e-19 | 87.4 |
| Msa0527130 | AT2G30020.1 | 28.216 | 241 | 146 | 11 | 65 | 295 | 169 | 392 | 3.57e-19 | 87.4 |
| Msa0527130 | AT2G25620.1 | 28.090 | 267 | 147 | 9 | 65 | 309 | 127 | 370 | 1.22e-18 | 85.9 |
| Msa0527130 | AT2G25620.2 | 28.090 | 267 | 147 | 9 | 65 | 309 | 127 | 370 | 1.22e-18 | 85.9 |
| Msa0527130 | AT2G20630.1 | 27.451 | 255 | 156 | 12 | 44 | 293 | 46 | 276 | 9.29e-18 | 82.0 |
| Msa0527130 | AT3G51470.2 | 26.692 | 266 | 159 | 9 | 60 | 311 | 56 | 299 | 9.93e-18 | 82.4 |
| Msa0527130 | AT1G22280.1 | 27.897 | 233 | 144 | 8 | 66 | 293 | 65 | 278 | 1.06e-17 | 82.0 |
| Msa0527130 | AT2G40860.1 | 29.008 | 262 | 139 | 9 | 57 | 297 | 415 | 650 | 1.35e-17 | 83.6 |
| Msa0527130 | AT3G51470.1 | 26.692 | 266 | 159 | 9 | 60 | 311 | 100 | 343 | 1.60e-17 | 82.4 |
| Msa0527130 | AT2G40860.4 | 29.008 | 262 | 139 | 9 | 57 | 297 | 317 | 552 | 1.83e-17 | 83.2 |
| Msa0527130 | AT1G34750.2 | 29.787 | 235 | 137 | 10 | 66 | 293 | 66 | 279 | 2.47e-17 | 80.9 |
| Msa0527130 | AT1G34750.1 | 29.787 | 235 | 137 | 10 | 66 | 293 | 66 | 279 | 2.47e-17 | 80.9 |
| Msa0527130 | AT1G34750.3 | 29.787 | 235 | 137 | 10 | 66 | 293 | 66 | 279 | 2.47e-17 | 80.9 |
| Msa0527130 | AT2G20630.2 | 27.203 | 261 | 161 | 12 | 44 | 299 | 46 | 282 | 3.86e-17 | 80.5 |
| Msa0527130 | AT2G34740.3 | 29.630 | 216 | 127 | 7 | 44 | 256 | 98 | 291 | 1.04e-16 | 79.3 |
| Msa0527130 | AT2G34740.2 | 29.630 | 216 | 127 | 7 | 44 | 256 | 116 | 309 | 1.13e-16 | 79.7 |
| Msa0527130 | AT2G40860.2 | 28.395 | 243 | 123 | 8 | 57 | 271 | 415 | 634 | 3.93e-16 | 79.3 |
| Msa0527130 | AT1G17550.1 | 25.000 | 292 | 152 | 9 | 63 | 303 | 234 | 509 | 1.53e-15 | 77.4 |
| Msa0527130 | AT1G17550.2 | 25.000 | 292 | 152 | 9 | 63 | 303 | 234 | 509 | 1.53e-15 | 77.4 |
| Msa0527130 | AT1G72770.4 | 25.430 | 291 | 151 | 10 | 63 | 303 | 235 | 509 | 8.10e-15 | 75.1 |
| Msa0527130 | AT1G72770.1 | 25.430 | 291 | 151 | 10 | 63 | 303 | 235 | 509 | 8.10e-15 | 75.1 |
| Msa0527130 | AT1G72770.3 | 25.430 | 291 | 151 | 10 | 63 | 303 | 235 | 509 | 8.10e-15 | 75.1 |
| Msa0527130 | AT2G33700.1 | 26.984 | 252 | 146 | 10 | 65 | 302 | 122 | 349 | 1.84e-14 | 73.6 |
| Msa0527130 | AT3G15260.2 | 27.897 | 233 | 144 | 10 | 66 | 293 | 73 | 286 | 6.94e-14 | 71.2 |
| Msa0527130 | AT3G15260.1 | 27.897 | 233 | 144 | 10 | 66 | 293 | 73 | 286 | 6.94e-14 | 71.2 |
| Msa0527130 | AT3G06270.1 | 26.014 | 296 | 171 | 11 | 34 | 295 | 61 | 342 | 2.41e-13 | 70.1 |
| Msa0527130 | AT1G18030.2 | 31.373 | 204 | 107 | 8 | 67 | 251 | 110 | 299 | 6.08e-13 | 68.6 |
| Msa0527130 | AT3G11410.1 | 26.068 | 234 | 128 | 7 | 63 | 267 | 134 | 351 | 1.17e-12 | 68.6 |
| Msa0527130 | AT3G17250.1 | 25.301 | 249 | 152 | 8 | 65 | 293 | 157 | 391 | 2.57e-12 | 67.4 |
| Msa0527130 | AT5G59220.1 | 26.766 | 269 | 160 | 10 | 19 | 264 | 94 | 348 | 7.37e-12 | 65.9 |
| Msa0527130 | AT1G48040.1 | 25.830 | 271 | 155 | 7 | 65 | 311 | 115 | 363 | 7.42e-12 | 65.9 |
| Msa0527130 | AT5G57050.3 | 30.818 | 159 | 92 | 5 | 66 | 217 | 160 | 307 | 1.89e-11 | 64.3 |
| Msa0527130 | AT5G27930.1 | 30.189 | 159 | 105 | 5 | 129 | 281 | 176 | 334 | 6.83e-11 | 63.2 |
| Msa0527130 | AT5G27930.2 | 30.189 | 159 | 105 | 5 | 129 | 281 | 176 | 334 | 6.83e-11 | 63.2 |
| Msa0527130 | AT2G29380.1 | 28.636 | 220 | 119 | 9 | 67 | 264 | 113 | 316 | 7.22e-11 | 62.8 |
Find 163 sgRNAs with CRISPR-Local
Find 336 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CCTGATATGGTTGTTGTTTA+TGG | 0.088587 | 3_4:-81353238 | Msa0527130:CDS |
| CCATGGCTTCTTTCTTCTTT+TGG | 0.118842 | 3_4:+81349385 | None:intergenic |
| TTGCCAAGGGCTTTGGTTGC+TGG | 0.194628 | 3_4:-81352126 | Msa0527130:CDS |
| TAGATCTGTTCATTTGTATA+TGG | 0.214122 | 3_4:-81348880 | Msa0527130:three_prime_UTR |
| AAATCTTCTGATTGTTCATA+TGG | 0.282600 | 3_4:-81349093 | Msa0527130:three_prime_UTR |
| CAGAAGTAGGTGGTTTCTCC+TGG | 0.297489 | 3_4:+81349796 | None:intergenic |
| TAACAGTAGCATTCTGTTAG+AGG | 0.298403 | 3_4:-81349035 | Msa0527130:three_prime_UTR |
| CCATAAACAACAACCATATC+AGG | 0.300008 | 3_4:+81353238 | None:intergenic |
| AACACAAAGAAACCGGTAAA+AGG | 0.330956 | 3_4:-81349769 | Msa0527130:exon |
| ACATCATTCGGTTCCCCTTT+CGG | 0.332670 | 3_4:-81353302 | Msa0527130:CDS |
| CTCTCGATCCATTGGTGATA+TGG | 0.341033 | 3_4:-81350641 | Msa0527130:CDS |
| AGCAGCGTTGCCAAGGGCTT+TGG | 0.343425 | 3_4:-81352133 | Msa0527130:CDS |
| ACCTTCACTTGCTTTACATA+TGG | 0.352054 | 3_4:+81350592 | None:intergenic |
| TATAGTTCCCGTACCATATC+TGG | 0.358257 | 3_4:+81349676 | None:intergenic |
| ATCTACATCCAGAAACAAAA+AGG | 0.365255 | 3_4:+81348898 | None:intergenic |
| CAGGTTATTATTCCTGACTA+TGG | 0.366731 | 3_4:+81348712 | None:intergenic |
| ACAGAACCTTTCGCCACTCT+TGG | 0.367913 | 3_4:+81348977 | None:intergenic |
| TTTATACAGCTTTCCAATGC+TGG | 0.380887 | 3_4:-81350103 | Msa0527130:intron |
| TTATCAGCAGTGATGGAGTC+TGG | 0.394506 | 3_4:-81350069 | Msa0527130:CDS |
| ATGGAAGGGAAACGGATATC+AGG | 0.403186 | 3_4:-81349366 | Msa0527130:intron |
| TTGAGATAGTTTGAAATTGT+CGG | 0.406322 | 3_4:+81353559 | None:intergenic |
| GAAAATCGAGAAACCTGATA+TGG | 0.410088 | 3_4:-81353251 | Msa0527130:CDS |
| CATCTGTTTGATCCATAGTC+AGG | 0.412431 | 3_4:-81348724 | Msa0527130:three_prime_UTR |
| AGATCTGTTCATTTGTATAT+GGG | 0.412495 | 3_4:-81348879 | Msa0527130:three_prime_UTR |
| GAAATTGAGGGAACAATGTC+TGG | 0.417747 | 3_4:-81353334 | Msa0527130:exon |
| CTTTGTGTTGGTGCAGAAGT+AGG | 0.419651 | 3_4:+81349783 | None:intergenic |
| ACGTAAGGAAACCGCGTCCC+TGG | 0.425898 | 3_4:-81349433 | Msa0527130:three_prime_UTR |
| GTAACCTTCGTGATTATAGA+AGG | 0.427750 | 3_4:-81351457 | Msa0527130:CDS |
| TTGCGTGAGGATTAAATTGA+AGG | 0.433980 | 3_4:-81353373 | Msa0527130:five_prime_UTR |
| TGAGGGAACAATGTCTGGTC+GGG | 0.434340 | 3_4:-81353329 | Msa0527130:exon |
| AAAGACGCATAGTTTGTTGT+TGG | 0.438079 | 3_4:+81348637 | None:intergenic |
| TGATATCCGTTTCCCTTCCA+TGG | 0.439131 | 3_4:+81349368 | None:intergenic |
| AGAATACGTTGAGCCAGATA+TGG | 0.445706 | 3_4:-81349689 | Msa0527130:three_prime_UTR |
| ATTTGTATATGGGTCTTGAA+TGG | 0.446612 | 3_4:-81348869 | Msa0527130:three_prime_UTR |
| CATAGTCAGGAATAATAACC+TGG | 0.454424 | 3_4:-81348711 | Msa0527130:three_prime_UTR |
| GTTAGAGGATTTCTGTGACT+TGG | 0.454685 | 3_4:-81349020 | Msa0527130:three_prime_UTR |
| CAGAACCTTTCGCCACTCTT+GGG | 0.456137 | 3_4:+81348978 | None:intergenic |
| GAAAATTTACAGCTATTTGA+CGG | 0.459051 | 3_4:-81352252 | Msa0527130:intron |
| GTGACTCCCATTATTACATC+GGG | 0.459533 | 3_4:-81349143 | Msa0527130:three_prime_UTR |
| GGATGCTCTAACTGCAGAAA+TGG | 0.466163 | 3_4:-81350047 | Msa0527130:CDS |
| TTGGCAACTTAAGCAAAGAA+AGG | 0.468414 | 3_4:+81349404 | None:intergenic |
| CAGGAATCTTTGCAAGCAAA+GGG | 0.469841 | 3_4:-81349861 | Msa0527130:CDS |
| CACTCATCTCTGTTGAGATC+AGG | 0.470329 | 3_4:+81352159 | None:intergenic |
| ACTTGCTTTACATATGGTAC+AGG | 0.473622 | 3_4:+81350598 | None:intergenic |
| TTGCATACTTGAACCTTCTG+AGG | 0.473684 | 3_4:-81351398 | Msa0527130:CDS |
| AGAAGTAGGTGGTTTCTCCT+GGG | 0.481102 | 3_4:+81349797 | None:intergenic |
| AGAAGGTTCAAGTATGCAAC+GGG | 0.481264 | 3_4:+81351402 | None:intergenic |
| GCCACTTGTATGCGCAGTGC+AGG | 0.482617 | 3_4:-81348662 | Msa0527130:three_prime_UTR |
| TCAGGAATCTTTGCAAGCAA+AGG | 0.482677 | 3_4:-81349862 | Msa0527130:intron |
| AAATTACAATTACTTGAAGA+TGG | 0.482710 | 3_4:+81353510 | None:intergenic |
| ACAAACGACTCTTTGACATT+CGG | 0.486429 | 3_4:+81353168 | None:intergenic |
| AACAAGTCTTCCTCCAGCAT+TGG | 0.488721 | 3_4:+81350090 | None:intergenic |
| TAGGTTGGTCGTTGAGATGT+TGG | 0.489193 | 3_4:-81350681 | Msa0527130:CDS |
| CGTAAGGAAACCGCGTCCCT+GGG | 0.493286 | 3_4:-81349432 | Msa0527130:three_prime_UTR |
| CCTTCGTGATTATAGAAGGA+TGG | 0.495959 | 3_4:-81351453 | Msa0527130:CDS |
| TAATATATCGACCACGATGC+AGG | 0.497457 | 3_4:+81349821 | None:intergenic |
| AAGTTGTGTCGGCTAAATAC+AGG | 0.499875 | 3_4:-81351201 | Msa0527130:CDS |
| AGTGGGTAGCAGCGTTGCCA+AGG | 0.501821 | 3_4:-81352140 | Msa0527130:CDS |
| TACTTGAACCTTCTGAGGGC+GGG | 0.503212 | 3_4:-81351393 | Msa0527130:CDS |
| TGTCAAGTAGAGATTAAACC+TGG | 0.504586 | 3_4:-81349488 | Msa0527130:three_prime_UTR |
| CTGCACCAACACAAAGAAAC+CGG | 0.504721 | 3_4:-81349776 | Msa0527130:CDS |
| GGGTGCGCATCACTTCTAGT+GGG | 0.504965 | 3_4:-81351228 | Msa0527130:CDS |
| TGTTGTGTTTGAAGAAATTG+AGG | 0.508167 | 3_4:-81353347 | Msa0527130:five_prime_UTR |
| ACGCTTCAACAGCACCGAAA+GGG | 0.508685 | 3_4:+81353288 | None:intergenic |
| TAATGGGAGTCACAGTTGCT+TGG | 0.518408 | 3_4:+81349153 | None:intergenic |
| AGCAAAGAAAGGTCCATCCC+AGG | 0.519245 | 3_4:+81349415 | None:intergenic |
| ATTGTTCAGAAGATTCTCCT+TGG | 0.521763 | 3_4:+81352200 | None:intergenic |
| AGGAAACCGCGTCCCTGGGA+TGG | 0.523145 | 3_4:-81349428 | Msa0527130:three_prime_UTR |
| TTGTGTCTCTCTCGATCCAT+TGG | 0.528406 | 3_4:-81350649 | Msa0527130:CDS |
| ATATGCACAGCACAAACATC+GGG | 0.532848 | 3_4:-81351487 | Msa0527130:intron |
| AAGAAGCCATGGAAGGGAAA+CGG | 0.535942 | 3_4:-81349374 | Msa0527130:three_prime_UTR |
| GGACGCGGTTTCCTTACGTT+AGG | 0.536254 | 3_4:+81349437 | None:intergenic |
| TGGTCGGGGAGAACATCATT+CGG | 0.536938 | 3_4:-81353314 | Msa0527130:CDS |
| CTTCGTGATTATAGAAGGAT+GGG | 0.537043 | 3_4:-81351452 | Msa0527130:CDS |
| ACCGGTAAAAGGAATGTTGA+AGG | 0.538747 | 3_4:-81349758 | Msa0527130:exon |
| AGTCTCCTGTTATGAAGCAT+TGG | 0.539442 | 3_4:+81349057 | None:intergenic |
| AGACTTGTTATCAGCAGTGA+TGG | 0.542264 | 3_4:-81350076 | Msa0527130:CDS |
| TGGTCGTTGAGATGTTGGCC+TGG | 0.544362 | 3_4:-81350676 | Msa0527130:CDS |
| GATCTGCCTTGCTTTCAGAA+AGG | 0.546185 | 3_4:-81349645 | Msa0527130:intron |
| ATGAGGGTGCGCCTAACGTA+AGG | 0.546714 | 3_4:-81349448 | Msa0527130:three_prime_UTR |
| ACCAAACCTTTCTGAAAGCA+AGG | 0.546871 | 3_4:+81349639 | None:intergenic |
| TTGTCGTGGCATGTCGGCGG+AGG | 0.549386 | 3_4:-81350014 | Msa0527130:CDS |
| AATGCTAGCGAGAATAAGAA+AGG | 0.549595 | 3_4:-81353214 | Msa0527130:CDS |
| ACATGCCACGACAACAATCA+AGG | 0.552840 | 3_4:+81350023 | None:intergenic |
| CGCTTCAACAGCACCGAAAG+GGG | 0.554180 | 3_4:+81353289 | None:intergenic |
| CGAGAGAGACACAAGCCACC+AGG | 0.557992 | 3_4:+81350658 | None:intergenic |
| CTTGCTTTACATATGGTACA+GGG | 0.558530 | 3_4:+81350599 | None:intergenic |
| ATATTCAGAAGATTCAATGT+AGG | 0.558567 | 3_4:+81348810 | None:intergenic |
| TAATGAAGCCCGCCCTCAGA+AGG | 0.561382 | 3_4:+81351385 | None:intergenic |
| AACCTTTCGCCACTCTTGGG+TGG | 0.561700 | 3_4:+81348981 | None:intergenic |
| AAGAAGAAAGAAGCCATGGA+AGG | 0.562499 | 3_4:-81349381 | Msa0527130:three_prime_UTR |
| AAGCCAGCAACCAAAGCCCT+TGG | 0.562857 | 3_4:+81352123 | None:intergenic |
| TGCATACTTGAACCTTCTGA+GGG | 0.565442 | 3_4:-81351397 | Msa0527130:CDS |
| ACGTTGAGCCAGATATGGTA+CGG | 0.565764 | 3_4:-81349684 | Msa0527130:three_prime_UTR |
| AGGGTGCGCATCACTTCTAG+TGG | 0.569055 | 3_4:-81351229 | Msa0527130:CDS |
| TTGAGGGAACAATGTCTGGT+CGG | 0.573524 | 3_4:-81353330 | Msa0527130:exon |
| TGCTGCTGCAATTTATGCCA+AGG | 0.573567 | 3_4:-81352217 | Msa0527130:CDS |
| AGAAGAAAGAAGCCATGGAA+GGG | 0.574414 | 3_4:-81349380 | Msa0527130:three_prime_UTR |
| CATATGCACAGCACAAACAT+CGG | 0.575210 | 3_4:-81351488 | Msa0527130:intron |
| CGTGGTCGATATATTACCCC+AGG | 0.577205 | 3_4:-81349814 | Msa0527130:CDS |
| CTTTCAGATAGACGTAGCAA+TGG | 0.578689 | 3_4:-81349254 | Msa0527130:intron |
| CCAAAAGAAGAAAGAAGCCA+TGG | 0.583569 | 3_4:-81349385 | Msa0527130:three_prime_UTR |
| GTTGTAACAGTTGCATCAGT+TGG | 0.584270 | 3_4:-81351430 | Msa0527130:CDS |
| TCTGTTGAGATCAGGAGGAA+TGG | 0.584831 | 3_4:+81352167 | None:intergenic |
| ACCAACATCCATATCACCAA+TGG | 0.585265 | 3_4:+81350633 | None:intergenic |
| CACGCTTCAACAGCACCGAA+AGG | 0.586769 | 3_4:+81353287 | None:intergenic |
| TGTACTGAAATACCCTCCCC+AGG | 0.587459 | 3_4:+81349470 | None:intergenic |
| ATACTTGAACCTTCTGAGGG+CGG | 0.588848 | 3_4:-81351394 | Msa0527130:CDS |
| TGATCTCAACAGAGATGAGT+GGG | 0.595669 | 3_4:-81352157 | Msa0527130:CDS |
| AAAGGTCCATCCCAGGGACG+CGG | 0.595744 | 3_4:+81349422 | None:intergenic |
| GAGGGAACAATGTCTGGTCG+GGG | 0.598719 | 3_4:-81353328 | Msa0527130:exon |
| TCCATTGGTGATATGGATGT+TGG | 0.599313 | 3_4:-81350634 | Msa0527130:CDS |
| TGTGACTCCCATTATTACAT+CGG | 0.599756 | 3_4:-81349144 | Msa0527130:three_prime_UTR |
| AGTAGAGATTAAACCTGGGG+AGG | 0.600098 | 3_4:-81349483 | Msa0527130:three_prime_UTR |
| GCAAAGAAAGGTCCATCCCA+GGG | 0.600709 | 3_4:+81349416 | None:intergenic |
| CAGCTATTTGACGGACACAA+TGG | 0.601732 | 3_4:-81352243 | Msa0527130:CDS |
| GTTGTGTTTGAAGAAATTGA+GGG | 0.602546 | 3_4:-81353346 | Msa0527130:five_prime_UTR |
| GTAGAGATTAAACCTGGGGA+GGG | 0.602809 | 3_4:-81349482 | Msa0527130:three_prime_UTR |
| GTGGGTAGCAGCGTTGCCAA+GGG | 0.603465 | 3_4:-81352139 | Msa0527130:CDS |
| CAGAAGGTTCAAGTATGCAA+CGG | 0.604075 | 3_4:+81351401 | None:intergenic |
| GACTCCCATTATTACATCGG+GGG | 0.606915 | 3_4:-81349141 | Msa0527130:three_prime_UTR |
| TCATCTCTGTTGAGATCAGG+AGG | 0.608530 | 3_4:+81352162 | None:intergenic |
| TACTATTGCATAATACAACA+AGG | 0.609547 | 3_4:+81348840 | None:intergenic |
| ATGGTCCTTGATTGTTGTCG+TGG | 0.610413 | 3_4:-81350028 | Msa0527130:CDS |
| TGGAATGCTCAACAGGATGT+CGG | 0.611135 | 3_4:-81348947 | Msa0527130:three_prime_UTR |
| GCCTGCACTGCGCATACAAG+TGG | 0.614389 | 3_4:+81348661 | None:intergenic |
| TATCAGCAGTGATGGAGTCT+GGG | 0.616566 | 3_4:-81350068 | Msa0527130:CDS |
| ATAGTCAGGAATAATAACCT+GGG | 0.617389 | 3_4:-81348710 | Msa0527130:three_prime_UTR |
| TGTCGGCTAAATACAGGCGG+AGG | 0.619609 | 3_4:-81351195 | Msa0527130:CDS |
| CTGATCTCAACAGAGATGAG+TGG | 0.619687 | 3_4:-81352158 | Msa0527130:CDS |
| CGTTGAGCCAGATATGGTAC+GGG | 0.620610 | 3_4:-81349683 | Msa0527130:three_prime_UTR |
| ACCATATGTAAAGCAAGTGA+AGG | 0.621718 | 3_4:-81350593 | Msa0527130:intron |
| ATACAGCTTTCCAATGCTGG+AGG | 0.622202 | 3_4:-81350100 | Msa0527130:intron |
| TGTGTTGGTGCAGAAGTAGG+TGG | 0.623231 | 3_4:+81349786 | None:intergenic |
| ACAAAGCAATCTCTTGCGTG+AGG | 0.623242 | 3_4:-81353386 | Msa0527130:five_prime_UTR |
| GGAGGGTATTTCAGTACATG+AGG | 0.623571 | 3_4:-81349465 | Msa0527130:three_prime_UTR |
| AAATACAGGCGGAGGTGCAG+AGG | 0.629751 | 3_4:-81351187 | Msa0527130:intron |
| CTTGTCAGCAGATCATCGAC+TGG | 0.635215 | 3_4:-81351362 | Msa0527130:CDS |
| GTGCGCATCACTTCTAGTGG+GGG | 0.635281 | 3_4:-81351226 | Msa0527130:CDS |
| ACTCTTGTAGAAATAACCCC+AGG | 0.637035 | 3_4:+81348693 | None:intergenic |
| GAAGTAGGTGGTTTCTCCTG+GGG | 0.638132 | 3_4:+81349798 | None:intergenic |
| GGTGCGCATCACTTCTAGTG+GGG | 0.638228 | 3_4:-81351227 | Msa0527130:CDS |
| GTCAAGTAGAGATTAAACCT+GGG | 0.644282 | 3_4:-81349487 | Msa0527130:three_prime_UTR |
| GAATATGAACCACCCAAGAG+TGG | 0.645393 | 3_4:-81348990 | Msa0527130:three_prime_UTR |
| TGATTGTTGTCGTGGCATGT+CGG | 0.646140 | 3_4:-81350020 | Msa0527130:CDS |
| TGCGCATACAAGTGGCAGTG+TGG | 0.654439 | 3_4:+81348669 | None:intergenic |
| GTACGGGAACTATACGAGGA+AGG | 0.659927 | 3_4:-81349667 | Msa0527130:three_prime_UTR |
| AACCACCCAAGAGTGGCGAA+AGG | 0.663603 | 3_4:-81348983 | Msa0527130:three_prime_UTR |
| TCAAGTAGAGATTAAACCTG+GGG | 0.678261 | 3_4:-81349486 | Msa0527130:three_prime_UTR |
| TGTCAAAGAGTCGTTTGTGA+TGG | 0.680422 | 3_4:-81353163 | Msa0527130:CDS |
| AACTTGAACATGTTGCAGAG+TGG | 0.681139 | 3_4:+81349527 | None:intergenic |
| TCGTTGAGATGTTGGCCTGG+TGG | 0.683154 | 3_4:-81350673 | Msa0527130:CDS |
| GAGGGTATTTCAGTACATGA+GGG | 0.690141 | 3_4:-81349464 | Msa0527130:three_prime_UTR |
| TTGTGTCGGCTAAATACAGG+CGG | 0.691772 | 3_4:-81351198 | Msa0527130:CDS |
| TGACTCCCATTATTACATCG+GGG | 0.695633 | 3_4:-81349142 | Msa0527130:three_prime_UTR |
| ACTATTGCATAATACAACAA+GGG | 0.697633 | 3_4:+81348841 | None:intergenic |
| CCATCCTTCTATAATCACGA+AGG | 0.697805 | 3_4:+81351453 | None:intergenic |
| AACATACGAAGATGACTCAG+AGG | 0.704568 | 3_4:+81349717 | None:intergenic |
| TAGTCAGGAATAATAACCTG+GGG | 0.711673 | 3_4:-81348709 | Msa0527130:three_prime_UTR |
| AATGCTCAACAGGATGTCGG+AGG | 0.712144 | 3_4:-81348944 | Msa0527130:three_prime_UTR |
| TTGTTGTCGTGGCATGTCGG+CGG | 0.717945 | 3_4:-81350017 | Msa0527130:CDS |
| TATGGTACGGGAACTATACG+AGG | 0.726277 | 3_4:-81349671 | Msa0527130:three_prime_UTR |
| AGATGACACAACCTGCATCG+TGG | 0.745057 | 3_4:-81349832 | Msa0527130:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAATTCTAATTTGA+TGG | - | chr3_4:81349108-81349127 | Msa0527130:three_prime_UTR | 10.0% |
| !!! | GTTTTATTTACTTATTATTT+TGG | - | chr3_4:81349351-81349370 | Msa0527130:intron | 10.0% |
| !!! | ATATTGTATTTTTCTTTACT+TGG | - | chr3_4:81349875-81349894 | Msa0527130:intron | 15.0% |
| !!! | TTCTATTTTTTTTCTTCTTA+AGG | - | chr3_4:81350652-81350671 | Msa0527130:CDS | 15.0% |
| !! | AAAAAGAAATAGTATTATAG+AGG | + | chr3_4:81351176-81351195 | None:intergenic | 15.0% |
| !! | ATAGATTCAAAAGTAAAATT+AGG | - | chr3_4:81351228-81351247 | Msa0527130:CDS | 15.0% |
| !!! | GATTCATTAATACTTTTTTT+AGG | - | chr3_4:81351434-81351453 | Msa0527130:CDS | 15.0% |
| !! | AATATAAAACTAAACTTAAG+TGG | + | chr3_4:81351699-81351718 | None:intergenic | 15.0% |
| !!! | TGTATTTTTAAGTCATTTAT+AGG | - | chr3_4:81351973-81351992 | Msa0527130:intron | 15.0% |
| !! | AATTAGAACAATTAACAAAT+AGG | + | chr3_4:81352046-81352065 | None:intergenic | 15.0% |
| !! | AAATTACAATTACTTGAAGA+TGG | + | chr3_4:81348684-81348703 | None:intergenic | 20.0% |
| !!! | TTTCTACATATTCTGTTTTT+GGG | - | chr3_4:81349053-81349072 | Msa0527130:three_prime_UTR | 20.0% |
| !! | CATCAAATATTTATGTGATT+TGG | - | chr3_4:81349302-81349321 | Msa0527130:intron | 20.0% |
| !!! | ATTTACTTATTATTTTGGTG+TGG | - | chr3_4:81349356-81349375 | Msa0527130:intron | 20.0% |
| !!! | ATTCAATTTGCTAAACTATT+TGG | + | chr3_4:81349687-81349706 | None:intergenic | 20.0% |
| !! | TTTAGCAAATTGAATATACA+CGG | - | chr3_4:81349692-81349711 | Msa0527130:three_prime_UTR | 20.0% |
| !! | CTTCATAACCAAATATTTAA+TGG | + | chr3_4:81350161-81350180 | None:intergenic | 20.0% |
| !!! | ATTTTTTTACTCTGAGAATT+GGG | + | chr3_4:81350255-81350274 | None:intergenic | 20.0% |
| !!! | AATTTTTTTACTCTGAGAAT+TGG | + | chr3_4:81350256-81350275 | None:intergenic | 20.0% |
| !! | AGGTTAGAAAAATATTATTG+AGG | + | chr3_4:81350338-81350357 | None:intergenic | 20.0% |
| !!! | AATATTTTTCTAACCTCTTT+TGG | - | chr3_4:81350342-81350361 | Msa0527130:intron | 20.0% |
| !! | AAAATAACTAACTCTACTAT+AGG | + | chr3_4:81350520-81350539 | None:intergenic | 20.0% |
| !!! | AGTAGAGTTAGTTATTTTTT+TGG | - | chr3_4:81350522-81350541 | Msa0527130:intron | 20.0% |
| !! | AAAAATGGATAACAGTTTAA+AGG | + | chr3_4:81351037-81351056 | None:intergenic | 20.0% |
| !!! | GGTTTTTGTTGTATTTTATT+GGG | + | chr3_4:81351105-81351124 | None:intergenic | 20.0% |
| !!! | TGGTTTTTGTTGTATTTTAT+TGG | + | chr3_4:81351106-81351125 | None:intergenic | 20.0% |
| !!! | ACTACGTTAATGATTTTTAT+AGG | - | chr3_4:81351491-81351510 | Msa0527130:intron | 20.0% |
| !!! | TAGTATTTTTGGAAAACAAA+AGG | + | chr3_4:81351864-81351883 | None:intergenic | 20.0% |
| !! | ACTAATTGATGAAACAAAAA+TGG | - | chr3_4:81351901-81351920 | Msa0527130:intron | 20.0% |
| !!! | CAAAAATGGAAGTATTTTAA+TGG | - | chr3_4:81351915-81351934 | Msa0527130:intron | 20.0% |
| !! | TTGAGATAGTTTGAAATTGT+CGG | + | chr3_4:81348635-81348654 | None:intergenic | 25.0% |
| !! | GTTTCTACATATTCTGTTTT+TGG | - | chr3_4:81349052-81349071 | Msa0527130:three_prime_UTR | 25.0% |
| !!! | TTCTACATATTCTGTTTTTG+GGG | - | chr3_4:81349054-81349073 | Msa0527130:three_prime_UTR | 25.0% |
| !! | CAAATATTTATGTGATTTGG+AGG | - | chr3_4:81349305-81349324 | Msa0527130:intron | 25.0% |
| ! | TGATCAAGAAAAGTAAATGA+TGG | - | chr3_4:81349384-81349403 | Msa0527130:three_prime_UTR | 25.0% |
| ! | GATCAAGAAAAGTAAATGAT+GGG | - | chr3_4:81349385-81349404 | Msa0527130:three_prime_UTR | 25.0% |
| ! | TTGAAGTTTCAACAATATCA+CGG | + | chr3_4:81349477-81349496 | None:intergenic | 25.0% |
| !!! | TAAACTATTTGGTGTATCTT+TGG | + | chr3_4:81349676-81349695 | None:intergenic | 25.0% |
| ! | TATGCATTCGTTGTATAAAA+AGG | + | chr3_4:81349840-81349859 | None:intergenic | 25.0% |
| ! | GAAAATTTACAGCTATTTGA+CGG | - | chr3_4:81349939-81349958 | Msa0527130:intron | 25.0% |
| !! | AATCTTCTGAACAATGTTTT+AGG | - | chr3_4:81349999-81350018 | Msa0527130:CDS | 25.0% |
| !! | GATAAAGATTTTCAACAGAA+AGG | - | chr3_4:81350101-81350120 | Msa0527130:intron | 25.0% |
| ! | CATAACCAAATATTTAATGG+AGG | + | chr3_4:81350158-81350177 | None:intergenic | 25.0% |
| ! | TCAAGATAAAAAAAAGACCA+GGG | + | chr3_4:81350382-81350401 | None:intergenic | 25.0% |
| ! | TATTGTGTAGATATTGTTAC+TGG | - | chr3_4:81350547-81350566 | Msa0527130:intron | 25.0% |
| ! | ATTGTGTAGATATTGTTACT+GGG | - | chr3_4:81350548-81350567 | Msa0527130:intron | 25.0% |
| ! | AATAGAAAAATCATGAACTG+AGG | + | chr3_4:81350639-81350658 | None:intergenic | 25.0% |
| !! | AAGAAGAGTAAGTTTTTACT+GGG | - | chr3_4:81350861-81350880 | Msa0527130:intron | 25.0% |
| !!! | TTATCCATTTTTATCTCTGA+TGG | - | chr3_4:81351045-81351064 | Msa0527130:intron | 25.0% |
| ! | AATACCATCAGAGATAAAAA+TGG | + | chr3_4:81351052-81351071 | None:intergenic | 25.0% |
| !!! | CAATGATTTGTTGTTTTTAG+TGG | + | chr3_4:81351132-81351151 | None:intergenic | 25.0% |
| ! | CACTAAAAACAACAAATCAT+TGG | - | chr3_4:81351130-81351149 | Msa0527130:intron | 25.0% |
| ! | AAATTAGGTCAATCATATCA+TGG | - | chr3_4:81351243-81351262 | Msa0527130:intron | 25.0% |
| ! | AATTAGGTCAATCATATCAT+GGG | - | chr3_4:81351244-81351263 | Msa0527130:intron | 25.0% |
| !! | CGTTAATGATTTTTATAGGT+TGG | - | chr3_4:81351495-81351514 | Msa0527130:intron | 25.0% |
| ! | AAACTAAACTTAAGTGGATA+CGG | + | chr3_4:81351693-81351712 | None:intergenic | 25.0% |
| !! | ATTTTCATAAGATTAACTGC+TGG | - | chr3_4:81351793-81351812 | Msa0527130:intron | 25.0% |
| !! | GGCAAAATCATTAGTATTTT+TGG | + | chr3_4:81351875-81351894 | None:intergenic | 25.0% |
| ! | AATGGAAAACAAAGTAGTTA+TGG | - | chr3_4:81351933-81351952 | Msa0527130:intron | 25.0% |
| ! | AGTTAAACAAATGAGTAACA+AGG | + | chr3_4:81352275-81352294 | None:intergenic | 25.0% |
| ! | ATCTGAAAGCAATATATTGA+AGG | + | chr3_4:81352926-81352945 | None:intergenic | 25.0% |
| !!! | CTTATATTCCTTTTTGTTTC+TGG | - | chr3_4:81353285-81353304 | Msa0527130:CDS | 25.0% |
| ! | TAGATCTGTTCATTTGTATA+TGG | - | chr3_4:81353311-81353330 | Msa0527130:CDS | 25.0% |
| ! | AGATCTGTTCATTTGTATAT+GGG | - | chr3_4:81353312-81353331 | Msa0527130:CDS | 25.0% |
| ! | ACTATTGCATAATACAACAA+GGG | + | chr3_4:81353353-81353372 | None:intergenic | 25.0% |
| ! | TACTATTGCATAATACAACA+AGG | + | chr3_4:81353354-81353373 | None:intergenic | 25.0% |
| ! | ATATTCAGAAGATTCAATGT+AGG | + | chr3_4:81353384-81353403 | None:intergenic | 25.0% |
| !! | GTTGATTTGTTTCCTGATTT+AGG | - | chr3_4:81348776-81348795 | Msa0527130:three_prime_UTR | 30.0% |
| CTTTGTTGAAATCCTAAATC+AGG | + | chr3_4:81348791-81348810 | None:intergenic | 30.0% | |
| TGTTGTGTTTGAAGAAATTG+AGG | - | chr3_4:81348844-81348863 | Msa0527130:three_prime_UTR | 30.0% | |
| GTTGTGTTTGAAGAAATTGA+GGG | - | chr3_4:81348845-81348864 | Msa0527130:three_prime_UTR | 30.0% | |
| ! | CTTAACTATGTTGTGCATTT+TGG | - | chr3_4:81349418-81349437 | Msa0527130:three_prime_UTR | 30.0% |
| ! | TTTTGGATTGACTGTGAATT+TGG | - | chr3_4:81349435-81349454 | Msa0527130:three_prime_UTR | 30.0% |
| !!! | AGTTTTGTTGCTAAAGTCAA+AGG | - | chr3_4:81349502-81349521 | Msa0527130:three_prime_UTR | 30.0% |
| !! | GTTTTGTTGCTAAAGTCAAA+GGG | - | chr3_4:81349503-81349522 | Msa0527130:three_prime_UTR | 30.0% |
| ! | TTTTGTTGCTAAAGTCAAAG+GGG | - | chr3_4:81349504-81349523 | Msa0527130:three_prime_UTR | 30.0% |
| GCAAAGTCAACCAAAAAAAA+AGG | + | chr3_4:81349593-81349612 | None:intergenic | 30.0% | |
| AAACAAAACCATTGCTTTGA+GGG | + | chr3_4:81349774-81349793 | None:intergenic | 30.0% | |
| AAAACAAAACCATTGCTTTG+AGG | + | chr3_4:81349775-81349794 | None:intergenic | 30.0% | |
| ! | AGATTTTCAACAGAAAGGTA+TGG | - | chr3_4:81350106-81350125 | Msa0527130:intron | 30.0% |
| TCTTGCCTCCATTAAATATT+TGG | - | chr3_4:81350150-81350169 | Msa0527130:intron | 30.0% | |
| ATTCATATGAAGATTCCAGA+TGG | + | chr3_4:81350198-81350217 | None:intergenic | 30.0% | |
| AGAACAATGAGACAAAAAAC+AGG | - | chr3_4:81350278-81350297 | Msa0527130:intron | 30.0% | |
| GTCAAGATAAAAAAAAGACC+AGG | + | chr3_4:81350383-81350402 | None:intergenic | 30.0% | |
| ! | GCAGTTATTAAATTTTCTGC+AGG | - | chr3_4:81350426-81350445 | Msa0527130:intron | 30.0% |
| ACTAACTCTACTATAGGTAT+GGG | + | chr3_4:81350514-81350533 | None:intergenic | 30.0% | |
| AACTAACTCTACTATAGGTA+TGG | + | chr3_4:81350515-81350534 | None:intergenic | 30.0% | |
| TTGTGTAGATATTGTTACTG+GGG | - | chr3_4:81350549-81350568 | Msa0527130:intron | 30.0% | |
| ! | GAAGAAGAGTAAGTTTTTAC+TGG | - | chr3_4:81350860-81350879 | Msa0527130:intron | 30.0% |
| ! | TCGTTTCATTTTCTTTCATC+AGG | - | chr3_4:81350939-81350958 | Msa0527130:intron | 30.0% |
| ! | TTTCATTTTCTTTCATCAGG+AGG | - | chr3_4:81350942-81350961 | Msa0527130:intron | 30.0% |
| ! | TTCATTTTCTTTCATCAGGA+GGG | - | chr3_4:81350943-81350962 | Msa0527130:intron | 30.0% |
| !! | ATGGTATTGACTACCTAAAA+AGG | - | chr3_4:81351064-81351083 | Msa0527130:intron | 30.0% |
| ! | ATGAGTCTTTAAGCCTTTTT+AGG | + | chr3_4:81351080-81351099 | None:intergenic | 30.0% |
| !!! | TTTGTTGTTTTTAGTGGTAG+TGG | + | chr3_4:81351126-81351145 | None:intergenic | 30.0% |
| ATTAGGTCAATCATATCATG+GGG | - | chr3_4:81351245-81351264 | Msa0527130:intron | 30.0% | |
| CTTAAAAGTCATCATGACAT+AGG | - | chr3_4:81351317-81351336 | Msa0527130:intron | 30.0% | |
| AACTAAACTTAAGTGGATAC+GGG | + | chr3_4:81351692-81351711 | None:intergenic | 30.0% | |
| GTTTCATCAATTAGTGTTCA+GGG | + | chr3_4:81351896-81351915 | None:intergenic | 30.0% | |
| TGTTTCATCAATTAGTGTTC+AGG | + | chr3_4:81351897-81351916 | None:intergenic | 30.0% | |
| GTGAATTTCATAAGGGATAA+TGG | + | chr3_4:81352019-81352038 | None:intergenic | 30.0% | |
| ! | AGGTCTTGTGAATTTCATAA+GGG | + | chr3_4:81352026-81352045 | None:intergenic | 30.0% |
| ! | TAGGTCTTGTGAATTTCATA+AGG | + | chr3_4:81352027-81352046 | None:intergenic | 30.0% |
| ! | GAGCATACTTTTACAATATG+TGG | + | chr3_4:81352211-81352230 | None:intergenic | 30.0% |
| GAAAGCAATATATTGAAGGA+GGG | + | chr3_4:81352922-81352941 | None:intergenic | 30.0% | |
| TGAAAGCAATATATTGAAGG+AGG | + | chr3_4:81352923-81352942 | None:intergenic | 30.0% | |
| ATCTACATCCAGAAACAAAA+AGG | + | chr3_4:81353296-81353315 | None:intergenic | 30.0% | |
| ATTTGTATATGGGTCTTGAA+TGG | - | chr3_4:81353322-81353341 | Msa0527130:CDS | 30.0% | |
| ATAGTCAGGAATAATAACCT+GGG | - | chr3_4:81353481-81353500 | Msa0527130:intron | 30.0% | |
| TTGCGTGAGGATTAAATTGA+AGG | - | chr3_4:81348818-81348837 | Msa0527130:three_prime_UTR | 35.0% | |
| GAAAATCGAGAAACCTGATA+TGG | - | chr3_4:81348940-81348959 | Msa0527130:three_prime_UTR | 35.0% | |
| CCATAAACAACAACCATATC+AGG | + | chr3_4:81348956-81348975 | None:intergenic | 35.0% | |
| !! | CCTGATATGGTTGTTGTTTA+TGG | - | chr3_4:81348953-81348972 | Msa0527130:three_prime_UTR | 35.0% |
| AATGCTAGCGAGAATAAGAA+AGG | - | chr3_4:81348977-81348996 | Msa0527130:three_prime_UTR | 35.0% | |
| ACAAACGACTCTTTGACATT+CGG | + | chr3_4:81349026-81349045 | None:intergenic | 35.0% | |
| ! | TGACTGTGAATTTGGTGAAA+TGG | - | chr3_4:81349443-81349462 | Msa0527130:three_prime_UTR | 35.0% |
| !! | TGTATCTTTGGAATCACAGT+GGG | + | chr3_4:81349664-81349683 | None:intergenic | 35.0% |
| AGCAAATTGAATATACACGG+AGG | - | chr3_4:81349695-81349714 | Msa0527130:three_prime_UTR | 35.0% | |
| CAGAAAATGCAAATGCAACA+TGG | + | chr3_4:81349914-81349933 | None:intergenic | 35.0% | |
| ATTGTTCAGAAGATTCTCCT+TGG | + | chr3_4:81349994-81350013 | None:intergenic | 35.0% | |
| GCAATTTCATAATCTCCATC+TGG | - | chr3_4:81350180-81350199 | Msa0527130:intron | 35.0% | |
| ! | TGAGACAAAAAACAGGTTGA+TGG | - | chr3_4:81350285-81350304 | Msa0527130:intron | 35.0% |
| TGTCTAATGTACATAGAGCA+TGG | - | chr3_4:81350462-81350481 | Msa0527130:intron | 35.0% | |
| GTAACCTTCGTGATTATAGA+AGG | - | chr3_4:81350734-81350753 | Msa0527130:intron | 35.0% | |
| CTTCGTGATTATAGAAGGAT+GGG | - | chr3_4:81350739-81350758 | Msa0527130:intron | 35.0% | |
| GAGACTTTACTGCAATGTAA+TGG | + | chr3_4:81350918-81350937 | None:intergenic | 35.0% | |
| !! | AAATCATTGGCTTGTCGAAT+GGG | - | chr3_4:81351143-81351162 | Msa0527130:intron | 35.0% |
| CTTGCTTTACATATGGTACA+GGG | + | chr3_4:81351595-81351614 | None:intergenic | 35.0% | |
| ACTTGCTTTACATATGGTAC+AGG | + | chr3_4:81351596-81351615 | None:intergenic | 35.0% | |
| ACCATATGTAAAGCAAGTGA+AGG | - | chr3_4:81351598-81351617 | Msa0527130:intron | 35.0% | |
| ACCTTCACTTGCTTTACATA+TGG | + | chr3_4:81351602-81351621 | None:intergenic | 35.0% | |
| TATGTAAAGCAAGTGAAGGT+TGG | - | chr3_4:81351602-81351621 | Msa0527130:intron | 35.0% | |
| !! | TCTAATTCATTTTTCCCCTC+TGG | - | chr3_4:81352059-81352078 | Msa0527130:intron | 35.0% |
| TGTATAAATAGAAGCCAGAG+GGG | + | chr3_4:81352076-81352095 | None:intergenic | 35.0% | |
| CTGTATAAATAGAAGCCAGA+GGG | + | chr3_4:81352077-81352096 | None:intergenic | 35.0% | |
| TTTATACAGCTTTCCAATGC+TGG | - | chr3_4:81352088-81352107 | Msa0527130:intron | 35.0% | |
| AAGATTCCTGAAGAAAGCAA+AGG | + | chr3_4:81352320-81352339 | None:intergenic | 35.0% | |
| !!! | TTTTACCGGTTTCTTTGTGT+TGG | + | chr3_4:81352423-81352442 | None:intergenic | 35.0% |
| AACACAAAGAAACCGGTAAA+AGG | - | chr3_4:81352422-81352441 | Msa0527130:intron | 35.0% | |
| TGTCAAGTAGAGATTAAACC+TGG | - | chr3_4:81352703-81352722 | Msa0527130:intron | 35.0% | |
| GTCAAGTAGAGATTAAACCT+GGG | - | chr3_4:81352704-81352723 | Msa0527130:intron | 35.0% | |
| TCAAGTAGAGATTAAACCTG+GGG | - | chr3_4:81352705-81352724 | Msa0527130:intron | 35.0% | |
| TTGGCAACTTAAGCAAAGAA+AGG | + | chr3_4:81352790-81352809 | None:intergenic | 35.0% | |
| AACTCGAGAATCAACATCAA+TGG | + | chr3_4:81352878-81352897 | None:intergenic | 35.0% | |
| TGAAGGAGGGAAATAGATTA+TGG | + | chr3_4:81352909-81352928 | None:intergenic | 35.0% | |
| TGTGACTCCCATTATTACAT+CGG | - | chr3_4:81353047-81353066 | Msa0527130:intron | 35.0% | |
| ! | GTTTTCCAATGCTTCATAAC+AGG | - | chr3_4:81353129-81353148 | Msa0527130:intron | 35.0% |
| TAACAGTAGCATTCTGTTAG+AGG | - | chr3_4:81353156-81353175 | Msa0527130:CDS | 35.0% | |
| CGAAAGGTTCTGTAAAAAGA+TGG | - | chr3_4:81353224-81353243 | Msa0527130:CDS | 35.0% | |
| AAAAAGATGGAATGCTCAAC+AGG | - | chr3_4:81353237-81353256 | Msa0527130:CDS | 35.0% | |
| CAGGTTATTATTCCTGACTA+TGG | + | chr3_4:81353482-81353501 | None:intergenic | 35.0% | |
| CATAGTCAGGAATAATAACC+TGG | - | chr3_4:81353480-81353499 | Msa0527130:intron | 35.0% | |
| TAGTCAGGAATAATAACCTG+GGG | - | chr3_4:81353482-81353501 | Msa0527130:intron | 35.0% | |
| !! | AAAGACGCATAGTTTGTTGT+TGG | + | chr3_4:81353557-81353576 | None:intergenic | 35.0% |
| ! | TGCAAGTTTTGCAGAACAAC+AGG | - | chr3_4:81348607-81348626 | Msa0527130:three_prime_UTR | 40.0% |
| GAAATTGAGGGAACAATGTC+TGG | - | chr3_4:81348857-81348876 | Msa0527130:three_prime_UTR | 40.0% | |
| TGTCAAAGAGTCGTTTGTGA+TGG | - | chr3_4:81349028-81349047 | Msa0527130:three_prime_UTR | 40.0% | |
| !!! | CTTTTGATGGAAAGCACTCT+TGG | - | chr3_4:81349158-81349177 | Msa0527130:three_prime_UTR | 40.0% |
| GTCAAGTGTCTGTTACCAAA+CGG | - | chr3_4:81349182-81349201 | Msa0527130:three_prime_UTR | 40.0% | |
| TGTAATCATGTGTGTCCGTT+TGG | + | chr3_4:81349200-81349219 | None:intergenic | 40.0% | |
| ! | TTTACTAGTGTCGAGTTGTC+AGG | - | chr3_4:81349235-81349254 | Msa0527130:three_prime_UTR | 40.0% |
| ! | TTACTAGTGTCGAGTTGTCA+GGG | - | chr3_4:81349236-81349255 | Msa0527130:three_prime_UTR | 40.0% |
| ! | CTGTGAATTTGGTGAAATGG+CGG | - | chr3_4:81349446-81349465 | Msa0527130:three_prime_UTR | 40.0% |
| !! | AGCTCAATAATGGGCTTGTT+TGG | + | chr3_4:81349562-81349581 | None:intergenic | 40.0% |
| ACAAGCCCATTATTGAGCTA+CGG | - | chr3_4:81349563-81349582 | Msa0527130:intron | 40.0% | |
| CTTTGCAAAAGCGAACACTT+TGG | - | chr3_4:81349607-81349626 | Msa0527130:intron | 40.0% | |
| !! | ACAGTGGGTTGATAAAGTCA+GGG | + | chr3_4:81349649-81349668 | None:intergenic | 40.0% |
| !! | GTGTATCTTTGGAATCACAG+TGG | + | chr3_4:81349665-81349684 | None:intergenic | 40.0% |
| !! | AAAACCATTGCTTTGAGGGT+GGG | + | chr3_4:81349770-81349789 | None:intergenic | 40.0% |
| ! | GTGTATCTGAAAGCATAGTG+TGG | - | chr3_4:81349814-81349833 | Msa0527130:CDS | 40.0% |
| TGATCTCAACAGAGATGAGT+GGG | - | chr3_4:81350034-81350053 | Msa0527130:CDS | 40.0% | |
| ! | TTGATGGATACAGAACACGA+TGG | - | chr3_4:81350301-81350320 | Msa0527130:intron | 40.0% |
| GGTACAAGAATCATCAGTCA+TGG | + | chr3_4:81350618-81350637 | None:intergenic | 40.0% | |
| CATATGCACAGCACAAACAT+CGG | - | chr3_4:81350703-81350722 | Msa0527130:intron | 40.0% | |
| ATATGCACAGCACAAACATC+GGG | - | chr3_4:81350704-81350723 | Msa0527130:intron | 40.0% | |
| CCATCCTTCTATAATCACGA+AGG | + | chr3_4:81350741-81350760 | None:intergenic | 40.0% | |
| CCTTCGTGATTATAGAAGGA+TGG | - | chr3_4:81350738-81350757 | Msa0527130:intron | 40.0% | |
| GTTGTAACAGTTGCATCAGT+TGG | - | chr3_4:81350761-81350780 | Msa0527130:intron | 40.0% | |
| AGAAGGTTCAAGTATGCAAC+GGG | + | chr3_4:81350792-81350811 | None:intergenic | 40.0% | |
| CAGAAGGTTCAAGTATGCAA+CGG | + | chr3_4:81350793-81350812 | None:intergenic | 40.0% | |
| TTGCATACTTGAACCTTCTG+AGG | - | chr3_4:81350793-81350812 | Msa0527130:intron | 40.0% | |
| TGCATACTTGAACCTTCTGA+GGG | - | chr3_4:81350794-81350813 | Msa0527130:intron | 40.0% | |
| !! | AAGTTGTGTCGGCTAAATAC+AGG | - | chr3_4:81350990-81351009 | Msa0527130:intron | 40.0% |
| !! | CAAATCATTGGCTTGTCGAA+TGG | - | chr3_4:81351142-81351161 | Msa0527130:intron | 40.0% |
| ! | TCCATTGGTGATATGGATGT+TGG | - | chr3_4:81351557-81351576 | Msa0527130:intron | 40.0% |
| ACCAACATCCATATCACCAA+TGG | + | chr3_4:81351561-81351580 | None:intergenic | 40.0% | |
| CAATATTGCTGCATGTGCAA+AGG | + | chr3_4:81351638-81351657 | None:intergenic | 40.0% | |
| CTGCAGCAATAAAGCAACAA+AGG | + | chr3_4:81351839-81351858 | None:intergenic | 40.0% | |
| !! | CTTTGTTGCTTTATTGCTGC+AGG | - | chr3_4:81351837-81351856 | Msa0527130:intron | 40.0% |
| GCTGTATAAATAGAAGCCAG+AGG | + | chr3_4:81352078-81352097 | None:intergenic | 40.0% | |
| !! | AGACTTGTTATCAGCAGTGA+TGG | - | chr3_4:81352115-81352134 | Msa0527130:CDS | 40.0% |
| TCATGTCCTTTGCTTTCTTC+AGG | - | chr3_4:81352311-81352330 | Msa0527130:intron | 40.0% | |
| TCAGGAATCTTTGCAAGCAA+AGG | - | chr3_4:81352329-81352348 | Msa0527130:intron | 40.0% | |
| CAGGAATCTTTGCAAGCAAA+GGG | - | chr3_4:81352330-81352349 | Msa0527130:intron | 40.0% | |
| TAATATATCGACCACGATGC+AGG | + | chr3_4:81352373-81352392 | None:intergenic | 40.0% | |
| ACCGGTAAAAGGAATGTTGA+AGG | - | chr3_4:81352433-81352452 | Msa0527130:intron | 40.0% | |
| ! | GCCTTCAACATTCCTTTTAC+CGG | + | chr3_4:81352437-81352456 | None:intergenic | 40.0% |
| ! | AGAGGACTTTTTGCGGAAAA+TGG | + | chr3_4:81352459-81352478 | None:intergenic | 40.0% |
| ! | ATGACTCAGAGGACTTTTTG+CGG | + | chr3_4:81352466-81352485 | None:intergenic | 40.0% |
| AACATACGAAGATGACTCAG+AGG | + | chr3_4:81352477-81352496 | None:intergenic | 40.0% | |
| AGAATACGTTGAGCCAGATA+TGG | - | chr3_4:81352502-81352521 | Msa0527130:intron | 40.0% | |
| TATAGTTCCCGTACCATATC+TGG | + | chr3_4:81352518-81352537 | None:intergenic | 40.0% | |
| ! | ACCAAACCTTTCTGAAAGCA+AGG | + | chr3_4:81352555-81352574 | None:intergenic | 40.0% |
| ! | TTTGCAGCTTGTTCTCTAGT+TGG | - | chr3_4:81352588-81352607 | Msa0527130:intron | 40.0% |
| AACATCTTTGTCTGAACTGC+AGG | - | chr3_4:81352626-81352645 | Msa0527130:intron | 40.0% | |
| AACTTGAACATGTTGCAGAG+TGG | + | chr3_4:81352667-81352686 | None:intergenic | 40.0% | |
| !! | GAGGGTATTTCAGTACATGA+GGG | - | chr3_4:81352727-81352746 | Msa0527130:intron | 40.0% |
| ! | CCATGGCTTCTTTCTTCTTT+TGG | + | chr3_4:81352809-81352828 | None:intergenic | 40.0% |
| CCAAAAGAAGAAAGAAGCCA+TGG | - | chr3_4:81352806-81352825 | Msa0527130:intron | 40.0% | |
| AAGAAGAAAGAAGCCATGGA+AGG | - | chr3_4:81352810-81352829 | Msa0527130:intron | 40.0% | |
| AGAAGAAAGAAGCCATGGAA+GGG | - | chr3_4:81352811-81352830 | Msa0527130:intron | 40.0% | |
| CTTTCAGATAGACGTAGCAA+TGG | - | chr3_4:81352937-81352956 | Msa0527130:intron | 40.0% | |
| GTGACTCCCATTATTACATC+GGG | - | chr3_4:81353048-81353067 | Msa0527130:intron | 40.0% | |
| TGACTCCCATTATTACATCG+GGG | - | chr3_4:81353049-81353068 | Msa0527130:intron | 40.0% | |
| GAAACCCCCGATGTAATAAT+GGG | + | chr3_4:81353057-81353076 | None:intergenic | 40.0% | |
| AGAAACCCCCGATGTAATAA+TGG | + | chr3_4:81353058-81353077 | None:intergenic | 40.0% | |
| AGTCTCCTGTTATGAAGCAT+TGG | + | chr3_4:81353137-81353156 | None:intergenic | 40.0% | |
| GTTAGAGGATTTCTGTGACT+TGG | - | chr3_4:81353171-81353190 | Msa0527130:CDS | 40.0% | |
| CATCTGTTTGATCCATAGTC+AGG | - | chr3_4:81353467-81353486 | Msa0527130:intron | 40.0% | |
| ACTCTTGTAGAAATAACCCC+AGG | + | chr3_4:81353501-81353520 | None:intergenic | 40.0% | |
| ACAAAGCAATCTCTTGCGTG+AGG | - | chr3_4:81348805-81348824 | Msa0527130:three_prime_UTR | 45.0% | |
| TTGAGGGAACAATGTCTGGT+CGG | - | chr3_4:81348861-81348880 | Msa0527130:three_prime_UTR | 45.0% | |
| ACATCATTCGGTTCCCCTTT+CGG | - | chr3_4:81348889-81348908 | Msa0527130:three_prime_UTR | 45.0% | |
| !!! | AGCACTGACGACACTTTTGA+TGG | - | chr3_4:81349145-81349164 | Msa0527130:three_prime_UTR | 45.0% |
| GTTTGGACTGACGATGAGTT+TGG | + | chr3_4:81349545-81349564 | None:intergenic | 45.0% | |
| CAAGCCCATTATTGAGCTAC+GGG | - | chr3_4:81349564-81349583 | Msa0527130:intron | 45.0% | |
| !!! | CTACGGGCGACCTTTTTTTT+TGG | - | chr3_4:81349580-81349599 | Msa0527130:intron | 45.0% |
| !! | CACAGTGGGTTGATAAAGTC+AGG | + | chr3_4:81349650-81349669 | None:intergenic | 45.0% |
| ATACACGGAGGAACATATCG+CGG | - | chr3_4:81349707-81349726 | Msa0527130:three_prime_UTR | 45.0% | |
| !! | AAACCATTGCTTTGAGGGTG+GGG | + | chr3_4:81349769-81349788 | None:intergenic | 45.0% |
| !! | CAAAACCATTGCTTTGAGGG+TGG | + | chr3_4:81349771-81349790 | None:intergenic | 45.0% |
| ! | CAGCTATTTGACGGACACAA+TGG | - | chr3_4:81349948-81349967 | Msa0527130:intron | 45.0% |
| TGCTGCTGCAATTTATGCCA+AGG | - | chr3_4:81349974-81349993 | Msa0527130:intron | 45.0% | |
| TCTGTTGAGATCAGGAGGAA+TGG | + | chr3_4:81350027-81350046 | None:intergenic | 45.0% | |
| TCATCTCTGTTGAGATCAGG+AGG | + | chr3_4:81350032-81350051 | None:intergenic | 45.0% | |
| CACTCATCTCTGTTGAGATC+AGG | + | chr3_4:81350035-81350054 | None:intergenic | 45.0% | |
| CTGATCTCAACAGAGATGAG+TGG | - | chr3_4:81350033-81350052 | Msa0527130:CDS | 45.0% | |
| GTGTAGCAGTGTACCAAAAG+AGG | + | chr3_4:81350358-81350377 | None:intergenic | 45.0% | |
| AGAATCATCAGTCATGGCTC+AGG | + | chr3_4:81350612-81350631 | None:intergenic | 45.0% | |
| ! | ATACTTGAACCTTCTGAGGG+CGG | - | chr3_4:81350797-81350816 | Msa0527130:intron | 45.0% |
| !! | TTGTGTCGGCTAAATACAGG+CGG | - | chr3_4:81350993-81351012 | Msa0527130:intron | 45.0% |
| !! | TAGGTTGGTCGTTGAGATGT+TGG | - | chr3_4:81351510-81351529 | Msa0527130:intron | 45.0% |
| TTGTGTCTCTCTCGATCCAT+TGG | - | chr3_4:81351542-81351561 | Msa0527130:intron | 45.0% | |
| ! | CTCTCGATCCATTGGTGATA+TGG | - | chr3_4:81351550-81351569 | Msa0527130:intron | 45.0% |
| ATACAGCTTTCCAATGCTGG+AGG | - | chr3_4:81352091-81352110 | Msa0527130:CDS | 45.0% | |
| AACAAGTCTTCCTCCAGCAT+TGG | + | chr3_4:81352104-81352123 | None:intergenic | 45.0% | |
| ! | TTATCAGCAGTGATGGAGTC+TGG | - | chr3_4:81352122-81352141 | Msa0527130:CDS | 45.0% |
| ! | TATCAGCAGTGATGGAGTCT+GGG | - | chr3_4:81352123-81352142 | Msa0527130:CDS | 45.0% |
| GGATGCTCTAACTGCAGAAA+TGG | - | chr3_4:81352144-81352163 | Msa0527130:CDS | 45.0% | |
| ATGGTCCTTGATTGTTGTCG+TGG | - | chr3_4:81352163-81352182 | Msa0527130:CDS | 45.0% | |
| ACATGCCACGACAACAATCA+AGG | + | chr3_4:81352171-81352190 | None:intergenic | 45.0% | |
| TGATTGTTGTCGTGGCATGT+CGG | - | chr3_4:81352171-81352190 | Msa0527130:CDS | 45.0% | |
| AGAAGTAGGTGGTTTCTCCT+GGG | + | chr3_4:81352397-81352416 | None:intergenic | 45.0% | |
| ! | CTTTGTGTTGGTGCAGAAGT+AGG | + | chr3_4:81352411-81352430 | None:intergenic | 45.0% |
| CTGCACCAACACAAAGAAAC+CGG | - | chr3_4:81352415-81352434 | Msa0527130:intron | 45.0% | |
| ACGTTGAGCCAGATATGGTA+CGG | - | chr3_4:81352507-81352526 | Msa0527130:intron | 45.0% | |
| TATGGTACGGGAACTATACG+AGG | - | chr3_4:81352520-81352539 | Msa0527130:intron | 45.0% | |
| GATCTGCCTTGCTTTCAGAA+AGG | - | chr3_4:81352546-81352565 | Msa0527130:intron | 45.0% | |
| GCCTTGCTTTCAGAAAGGTT+TGG | - | chr3_4:81352551-81352570 | Msa0527130:intron | 45.0% | |
| ! | TCTAGTTGGCTCTCTTGACA+TGG | - | chr3_4:81352602-81352621 | Msa0527130:intron | 45.0% |
| AGTAGAGATTAAACCTGGGG+AGG | - | chr3_4:81352708-81352727 | Msa0527130:intron | 45.0% | |
| GTAGAGATTAAACCTGGGGA+GGG | - | chr3_4:81352709-81352728 | Msa0527130:intron | 45.0% | |
| !! | GGAGGGTATTTCAGTACATG+AGG | - | chr3_4:81352726-81352745 | Msa0527130:intron | 45.0% |
| AAGAAGCCATGGAAGGGAAA+CGG | - | chr3_4:81352817-81352836 | Msa0527130:intron | 45.0% | |
| TGATATCCGTTTCCCTTCCA+TGG | + | chr3_4:81352826-81352845 | None:intergenic | 45.0% | |
| ATGGAAGGGAAACGGATATC+AGG | - | chr3_4:81352825-81352844 | Msa0527130:intron | 45.0% | |
| TAATGGGAGTCACAGTTGCT+TGG | + | chr3_4:81353041-81353060 | None:intergenic | 45.0% | |
| GACTCCCATTATTACATCGG+GGG | - | chr3_4:81353050-81353069 | Msa0527130:intron | 45.0% | |
| ATCGGGGGTTTCTCAGAATA+AGG | - | chr3_4:81353065-81353084 | Msa0527130:intron | 45.0% | |
| GAATATGAACCACCCAAGAG+TGG | - | chr3_4:81353201-81353220 | Msa0527130:CDS | 45.0% | |
| TGGAATGCTCAACAGGATGT+CGG | - | chr3_4:81353244-81353263 | Msa0527130:CDS | 45.0% | |
| TGAGGGAACAATGTCTGGTC+GGG | - | chr3_4:81348862-81348881 | Msa0527130:three_prime_UTR | 50.0% | |
| TGGTCGGGGAGAACATCATT+CGG | - | chr3_4:81348877-81348896 | Msa0527130:three_prime_UTR | 50.0% | |
| ! | ACGCTTCAACAGCACCGAAA+GGG | + | chr3_4:81348906-81348925 | None:intergenic | 50.0% |
| GTGTCTGGGTGGTGTTTCAT+AGG | - | chr3_4:81349268-81349287 | Msa0527130:intron | 50.0% | |
| GTCGCCCGTAGCTCAATAAT+GGG | + | chr3_4:81349571-81349590 | None:intergenic | 50.0% | |
| TCGCGGACGTATTTGTGCAA+TGG | - | chr3_4:81349724-81349743 | Msa0527130:three_prime_UTR | 50.0% | |
| GTGCAATGGCAAGTACCTTC+TGG | - | chr3_4:81349738-81349757 | Msa0527130:three_prime_UTR | 50.0% | |
| ! | TACTTGAACCTTCTGAGGGC+GGG | - | chr3_4:81350798-81350817 | Msa0527130:intron | 50.0% |
| CTTGTCAGCAGATCATCGAC+TGG | - | chr3_4:81350829-81350848 | Msa0527130:intron | 50.0% | |
| TAGTGGGGGTGAAGTTGTGT+CGG | - | chr3_4:81350979-81350998 | Msa0527130:intron | 50.0% | |
| AGATGACACAACCTGCATCG+TGG | - | chr3_4:81352359-81352378 | Msa0527130:intron | 50.0% | |
| CGTGGTCGATATATTACCCC+AGG | - | chr3_4:81352377-81352396 | Msa0527130:intron | 50.0% | |
| GAAGTAGGTGGTTTCTCCTG+GGG | + | chr3_4:81352396-81352415 | None:intergenic | 50.0% | |
| CAGAAGTAGGTGGTTTCTCC+TGG | + | chr3_4:81352398-81352417 | None:intergenic | 50.0% | |
| ! | TGTGTTGGTGCAGAAGTAGG+TGG | + | chr3_4:81352408-81352427 | None:intergenic | 50.0% |
| CGTTGAGCCAGATATGGTAC+GGG | - | chr3_4:81352508-81352527 | Msa0527130:intron | 50.0% | |
| GTACGGGAACTATACGAGGA+AGG | - | chr3_4:81352524-81352543 | Msa0527130:intron | 50.0% | |
| TGTACTGAAATACCCTCCCC+AGG | + | chr3_4:81352724-81352743 | None:intergenic | 50.0% | |
| GCAAAGAAAGGTCCATCCCA+GGG | + | chr3_4:81352778-81352797 | None:intergenic | 50.0% | |
| AGCAAAGAAAGGTCCATCCC+AGG | + | chr3_4:81352779-81352798 | None:intergenic | 50.0% | |
| CAGAACCTTTCGCCACTCTT+GGG | + | chr3_4:81353216-81353235 | None:intergenic | 50.0% | |
| ACAGAACCTTTCGCCACTCT+TGG | + | chr3_4:81353217-81353236 | None:intergenic | 50.0% | |
| AATGCTCAACAGGATGTCGG+AGG | - | chr3_4:81353247-81353266 | Msa0527130:CDS | 50.0% | |
| GAGGGAACAATGTCTGGTCG+GGG | - | chr3_4:81348863-81348882 | Msa0527130:three_prime_UTR | 55.0% | |
| ! | CGCTTCAACAGCACCGAAAG+GGG | + | chr3_4:81348905-81348924 | None:intergenic | 55.0% |
| ! | CACGCTTCAACAGCACCGAA+AGG | + | chr3_4:81348907-81348926 | None:intergenic | 55.0% |
| CGAGTTGTCAGGGTTGTGTC+TGG | - | chr3_4:81349246-81349265 | Msa0527130:three_prime_UTR | 55.0% | |
| TCAGGGTTGTGTCTGGTGTC+TGG | - | chr3_4:81349253-81349272 | Msa0527130:intron | 55.0% | |
| CAGGGTTGTGTCTGGTGTCT+GGG | - | chr3_4:81349254-81349273 | Msa0527130:intron | 55.0% | |
| GGTCGCCCGTAGCTCAATAA+TGG | + | chr3_4:81349572-81349591 | None:intergenic | 55.0% | |
| !! | ATTGCTTTGAGGGTGGGGTG+GGG | + | chr3_4:81349764-81349783 | None:intergenic | 55.0% |
| !! | CATTGCTTTGAGGGTGGGGT+GGG | + | chr3_4:81349765-81349784 | None:intergenic | 55.0% |
| ! | TTGCCAAGGGCTTTGGTTGC+TGG | - | chr3_4:81350065-81350084 | Msa0527130:CDS | 55.0% |
| AAGCCAGCAACCAAAGCCCT+TGG | + | chr3_4:81350071-81350090 | None:intergenic | 55.0% | |
| TGGTACACTGCTACACTCCC+TGG | - | chr3_4:81350362-81350381 | Msa0527130:intron | 55.0% | |
| TAATGAAGCCCGCCCTCAGA+AGG | + | chr3_4:81350809-81350828 | None:intergenic | 55.0% | |
| AGGGTGCGCATCACTTCTAG+TGG | - | chr3_4:81350962-81350981 | Msa0527130:intron | 55.0% | |
| GGGTGCGCATCACTTCTAGT+GGG | - | chr3_4:81350963-81350982 | Msa0527130:intron | 55.0% | |
| GGTGCGCATCACTTCTAGTG+GGG | - | chr3_4:81350964-81350983 | Msa0527130:intron | 55.0% | |
| GTGCGCATCACTTCTAGTGG+GGG | - | chr3_4:81350965-81350984 | Msa0527130:intron | 55.0% | |
| ! | TGTCGGCTAAATACAGGCGG+AGG | - | chr3_4:81350996-81351015 | Msa0527130:intron | 55.0% |
| ! | AAATACAGGCGGAGGTGCAG+AGG | - | chr3_4:81351004-81351023 | Msa0527130:intron | 55.0% |
| TGGTCGTTGAGATGTTGGCC+TGG | - | chr3_4:81351515-81351534 | Msa0527130:intron | 55.0% | |
| ! | TCGTTGAGATGTTGGCCTGG+TGG | - | chr3_4:81351518-81351537 | Msa0527130:intron | 55.0% |
| TTGTTGTCGTGGCATGTCGG+CGG | - | chr3_4:81352174-81352193 | Msa0527130:CDS | 55.0% | |
| ! | ATGAGGGTGCGCCTAACGTA+AGG | - | chr3_4:81352743-81352762 | Msa0527130:intron | 55.0% |
| GGACGCGGTTTCCTTACGTT+AGG | + | chr3_4:81352757-81352776 | None:intergenic | 55.0% | |
| AACCACCCAAGAGTGGCGAA+AGG | - | chr3_4:81353208-81353227 | Msa0527130:CDS | 55.0% | |
| AACCTTTCGCCACTCTTGGG+TGG | + | chr3_4:81353213-81353232 | None:intergenic | 55.0% | |
| TGCGCATACAAGTGGCAGTG+TGG | + | chr3_4:81353525-81353544 | None:intergenic | 55.0% | |
| GGTTGTGTCTGGTGTCTGGG+TGG | - | chr3_4:81349257-81349276 | Msa0527130:intron | 60.0% | |
| !! | CCATTGCTTTGAGGGTGGGG+TGG | + | chr3_4:81349766-81349785 | None:intergenic | 60.0% |
| CCACCCCACCCTCAAAGCAA+TGG | - | chr3_4:81349763-81349782 | Msa0527130:exon | 60.0% | |
| AGTGGGTAGCAGCGTTGCCA+AGG | - | chr3_4:81350051-81350070 | Msa0527130:CDS | 60.0% | |
| GTGGGTAGCAGCGTTGCCAA+GGG | - | chr3_4:81350052-81350071 | Msa0527130:CDS | 60.0% | |
| AGCAGCGTTGCCAAGGGCTT+TGG | - | chr3_4:81350058-81350077 | Msa0527130:CDS | 60.0% | |
| CGAGAGAGACACAAGCCACC+AGG | + | chr3_4:81351536-81351555 | None:intergenic | 60.0% | |
| ACGTAAGGAAACCGCGTCCC+TGG | - | chr3_4:81352758-81352777 | Msa0527130:intron | 60.0% | |
| CGTAAGGAAACCGCGTCCCT+GGG | - | chr3_4:81352759-81352778 | Msa0527130:intron | 60.0% | |
| AAAGGTCCATCCCAGGGACG+CGG | + | chr3_4:81352772-81352791 | None:intergenic | 60.0% | |
| GCCACTTGTATGCGCAGTGC+AGG | - | chr3_4:81353529-81353548 | Msa0527130:five_prime_UTR | 60.0% | |
| GCCTGCACTGCGCATACAAG+TGG | + | chr3_4:81353533-81353552 | None:intergenic | 60.0% | |
| TTGTCGTGGCATGTCGGCGG+AGG | - | chr3_4:81352177-81352196 | Msa0527130:CDS | 65.0% | |
| AGGAAACCGCGTCCCTGGGA+TGG | - | chr3_4:81352763-81352782 | Msa0527130:intron | 65.0% | |
| GAGGGTGGGGTGGGGCCAGA+AGG | + | chr3_4:81349756-81349775 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_4 | gene | 81348603 | 81353610 | 81348603 | ID=Msa0527130;Name=Msa0527130 |
| chr3_4 | mRNA | 81348603 | 81353610 | 81348603 | ID=Msa0527130-mRNA-1;Parent=Msa0527130;Name=Msa0527130-mRNA-1;_AED=0.11;_eAED=0.11;_QI=162|1|1|1|0.66|0.5|10|993|311 |
| chr3_4 | exon | 81348603 | 81349269 | 81348603 | ID=Msa0527130-mRNA-1:exon:24544;Parent=Msa0527130-mRNA-1 |
| chr3_4 | exon | 81349367 | 81349565 | 81349367 | ID=Msa0527130-mRNA-1:exon:24543;Parent=Msa0527130-mRNA-1 |
| chr3_4 | exon | 81349646 | 81349880 | 81349646 | ID=Msa0527130-mRNA-1:exon:24542;Parent=Msa0527130-mRNA-1 |
| chr3_4 | exon | 81349991 | 81350116 | 81349991 | ID=Msa0527130-mRNA-1:exon:24541;Parent=Msa0527130-mRNA-1 |
| chr3_4 | exon | 81350594 | 81350700 | 81350594 | ID=Msa0527130-mRNA-1:exon:24540;Parent=Msa0527130-mRNA-1 |
| chr3_4 | exon | 81351188 | 81351252 | 81351188 | ID=Msa0527130-mRNA-1:exon:24539;Parent=Msa0527130-mRNA-1 |
| chr3_4 | exon | 81351346 | 81351499 | 81351346 | ID=Msa0527130-mRNA-1:exon:24538;Parent=Msa0527130-mRNA-1 |
| chr3_4 | exon | 81352091 | 81352262 | 81352091 | ID=Msa0527130-mRNA-1:exon:24537;Parent=Msa0527130-mRNA-1 |
| chr3_4 | exon | 81353138 | 81353415 | 81353138 | ID=Msa0527130-mRNA-1:exon:24536;Parent=Msa0527130-mRNA-1 |
| chr3_4 | exon | 81353523 | 81353610 | 81353523 | ID=Msa0527130-mRNA-1:exon:24535;Parent=Msa0527130-mRNA-1 |
| chr3_4 | five_prime_UTR | 81353523 | 81353610 | 81353523 | ID=Msa0527130-mRNA-1:five_prime_utr;Parent=Msa0527130-mRNA-1 |
| chr3_4 | five_prime_UTR | 81353342 | 81353415 | 81353342 | ID=Msa0527130-mRNA-1:five_prime_utr;Parent=Msa0527130-mRNA-1 |
| chr3_4 | CDS | 81353138 | 81353341 | 81353138 | ID=Msa0527130-mRNA-1:cds;Parent=Msa0527130-mRNA-1 |
| chr3_4 | CDS | 81352091 | 81352262 | 81352091 | ID=Msa0527130-mRNA-1:cds;Parent=Msa0527130-mRNA-1 |
| chr3_4 | CDS | 81351346 | 81351499 | 81351346 | ID=Msa0527130-mRNA-1:cds;Parent=Msa0527130-mRNA-1 |
| chr3_4 | CDS | 81351188 | 81351252 | 81351188 | ID=Msa0527130-mRNA-1:cds;Parent=Msa0527130-mRNA-1 |
| chr3_4 | CDS | 81350594 | 81350700 | 81350594 | ID=Msa0527130-mRNA-1:cds;Parent=Msa0527130-mRNA-1 |
| chr3_4 | CDS | 81349991 | 81350116 | 81349991 | ID=Msa0527130-mRNA-1:cds;Parent=Msa0527130-mRNA-1 |
| chr3_4 | CDS | 81349773 | 81349880 | 81349773 | ID=Msa0527130-mRNA-1:cds;Parent=Msa0527130-mRNA-1 |
| chr3_4 | three_prime_UTR | 81349646 | 81349772 | 81349646 | ID=Msa0527130-mRNA-1:three_prime_utr;Parent=Msa0527130-mRNA-1 |
| chr3_4 | three_prime_UTR | 81349367 | 81349565 | 81349367 | ID=Msa0527130-mRNA-1:three_prime_utr;Parent=Msa0527130-mRNA-1 |
| chr3_4 | three_prime_UTR | 81348603 | 81349269 | 81348603 | ID=Msa0527130-mRNA-1:three_prime_utr;Parent=Msa0527130-mRNA-1 |
| Gene Sequence |
| Protein sequence |
