AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0691160

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691160 MtrunA17_Chr4g0040251 98.301 471 8 0 1 471 1 471 0.0 954
Msa0691160 MtrunA17_Chr4g0040261 85.622 466 66 1 1 466 34 498 0.0 818
Msa0691160 MtrunA17_Chr4g0040271 85.096 416 61 1 1 416 1 415 0.0 746
Msa0691160 MtrunA17_Chr4g0040221 64.882 467 157 4 1 464 1 463 0.0 596
Msa0691160 MtrunA17_Chr7g0217051 59.483 464 186 2 5 467 7 469 0.0 585
Msa0691160 MtrunA17_Chr4g0040001 61.373 466 173 4 1 460 1 465 0.0 568
Msa0691160 MtrunA17_Chr4g0040231 60.171 467 177 4 4 464 5 468 0.0 561
Msa0691160 MtrunA17_Chr4g0040011 61.717 431 158 4 1 425 9 438 0.0 525
Msa0691160 MtrunA17_Chr7g0248011 50.985 457 220 4 2 456 3 457 6.79e-161 464
Msa0691160 MtrunA17_Chr6g0457271 54.848 361 152 4 66 419 5 361 3.33e-140 407
Msa0691160 MtrunA17_Chr6g0457281 51.546 291 135 3 86 371 1 290 2.70e-102 307
Msa0691160 MtrunA17_Chr1g0147071 26.383 470 304 13 5 448 6 459 1.66e-44 162
Msa0691160 MtrunA17_Chr5g0393471 27.181 298 201 8 161 454 42 327 1.20e-24 104
Msa0691160 MtrunA17_Chr6g0457291 55.224 67 30 0 394 460 1 67 5.38e-18 78.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0691160 AT3G49190.1 27.484 473 294 12 9 448 18 474 1.21e-50 180
Msa0691160 AT5G53390.1 26.526 475 318 11 9 463 15 478 3.77e-50 178
Msa0691160 AT5G12420.1 28.205 468 294 11 9 448 7 460 4.66e-50 177
Msa0691160 AT5G16350.3 28.322 459 301 13 1 448 1 442 9.93e-48 171
Msa0691160 AT3G49200.1 28.480 467 301 13 9 448 26 486 2.46e-47 171
Msa0691160 AT5G12420.2 28.538 424 262 10 9 404 7 417 3.29e-47 170
Msa0691160 AT3G49210.1 27.447 470 300 10 9 442 26 490 3.82e-46 168
Msa0691160 AT5G16350.1 26.891 476 306 12 1 448 1 462 1.32e-45 166
Msa0691160 AT5G22490.1 28.358 469 284 18 10 448 12 458 1.54e-44 163
Msa0691160 AT1G72110.1 25.726 482 330 12 6 470 9 479 5.83e-44 161
Msa0691160 AT5G53380.1 26.593 455 299 9 9 440 9 451 6.50e-43 158
Msa0691160 AT2G38995.2 25.800 469 324 11 9 463 21 479 4.85e-39 148
Msa0691160 AT1G72110.2 25.105 478 329 12 6 470 9 470 5.05e-39 147
Msa0691160 AT5G37300.1 27.235 481 315 13 9 470 17 481 3.37e-38 145
Msa0691160 AT5G37300.4 27.235 481 315 13 9 470 35 499 5.75e-38 145
Msa0691160 AT5G16350.2 27.020 396 248 11 1 368 1 383 9.48e-37 140
Msa0691160 AT3G49210.2 27.604 384 237 10 9 356 26 404 1.65e-35 137
Msa0691160 AT5G22490.2 28.792 389 227 17 10 368 12 380 1.31e-33 131
Msa0691160 AT2G38995.3 25.899 417 278 13 65 463 7 410 8.87e-32 126
Msa0691160 AT2G38995.4 25.549 364 252 7 65 416 7 363 1.29e-28 117
Msa0691160 AT5G37300.2 27.273 374 246 9 9 368 35 396 8.08e-28 115
Msa0691160 AT5G37300.3 28.679 265 180 6 9 270 35 293 2.30e-20 92.4

Find 182 sgRNAs with CRISPR-Local

Find 500 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTGGTAACTTCCAATGTTTC+TGG 0.165108 4_4:+59199870 None:intergenic
AGGCTGGCTTGGCTTAATTT+TGG 0.177736 4_4:+59199772 None:intergenic
CAAACTATGAGGGGCTTTAA+TGG 0.178216 4_4:-59202468 Msa0691160:five_prime_UTR
TATTATCAACCAAATCATTT+TGG 0.185564 4_4:+59202268 None:intergenic
TGCTTTCCAAACAAAATCTA+AGG 0.198564 4_4:+59199741 None:intergenic
GTTTAGTTTCAGCAATAAAA+AGG 0.200238 4_4:-59194821 Msa0691160:three_prime_UTR
TCCCAAAGGGGTTTGTCTTT+TGG 0.228493 4_4:+59200800 None:intergenic
TATTGTCCACTTGGACTTAC+TGG 0.233113 4_4:+59201208 None:intergenic
CTTATTTGATAAAAGTTAAT+AGG 0.234055 4_4:+59202394 None:intergenic
ACTTCATATCCAAGATTAAA+TGG 0.237464 4_4:+59203032 None:intergenic
TGAATTGAAAAGGGAGAATA+TGG 0.251715 4_4:+59200565 None:intergenic
TAATTCGAGCACCGCTTAAA+TGG 0.255953 4_4:+59202137 None:intergenic
TTTGTAGTTTCCGAACTATT+TGG 0.260558 4_4:+59202487 None:intergenic
TTGTAGTTTCCGAACTATTT+GGG 0.282832 4_4:+59202488 None:intergenic
GGAACCTTAAAATGATCTTT+TGG 0.288626 4_4:+59200905 None:intergenic
CTCTCAATTCCATTTAATCT+TGG 0.288808 4_4:-59203041 Msa0691160:five_prime_UTR
GTCTTGTTAGGTTAAATAAA+AGG 0.294753 4_4:-59202766 Msa0691160:five_prime_UTR
TTCAATTCAATCTCTGACTT+TGG 0.302725 4_4:-59200551 Msa0691160:CDS
ACTAAAATAGCTTATAAATA+AGG 0.310691 4_4:+59194643 None:intergenic
TAGTACAAGTGAGGGGCTTT+TGG 0.317022 4_4:-59202557 Msa0691160:five_prime_UTR
GGATGAATGGTTCGGGAGTT+AGG 0.322596 4_4:-59202825 Msa0691160:five_prime_UTR
AGACTATGTAAAACAAATAA+TGG 0.322598 4_4:-59201386 Msa0691160:five_prime_UTR
TAATAGGAAAGCTGCTCAAT+AGG 0.325874 4_4:+59202410 None:intergenic
ATGTCCTAAAAGCACATGTT+AGG 0.327494 4_4:-59201732 Msa0691160:five_prime_UTR
AAGATGAAATGAACAATCTA+TGG 0.335275 4_4:-59194910 Msa0691160:exon
GTTAAGACTCGGTCCTGGTT+TGG 0.335627 4_4:+59202800 None:intergenic
AATCAGCCTTTGTCATATCT+TGG 0.336966 4_4:+59199842 None:intergenic
AAGATGATAAATCACCTATA+TGG 0.340719 4_4:-59200499 Msa0691160:CDS
AACCTAACAAGACATTATTC+AGG 0.340902 4_4:+59202776 None:intergenic
ACAATAAATGATGTGATTAC+TGG 0.341873 4_4:-59199982 Msa0691160:CDS
TGTTTCATTAGAAATTGATT+TGG 0.343128 4_4:+59202366 None:intergenic
TTAAGACTCGGTCCTGGTTT+GGG 0.345924 4_4:+59202801 None:intergenic
AATGGAATTGAGAGCATATA+AGG 0.347009 4_4:+59203050 None:intergenic
TCGAGGAGTACGTGAGCATT+TGG 0.348612 4_4:-59202436 Msa0691160:five_prime_UTR
CATTCGTACTTAAATTTGTA+TGG 0.350413 4_4:+59201548 None:intergenic
TTGTCATATCTTGGATTGAT+TGG 0.356004 4_4:+59199851 None:intergenic
TTCCACTGGCCCGATCAAAT+TGG 0.359504 4_4:+59198768 None:intergenic
CATGCAAGAGATTGACAATA+AGG 0.360961 4_4:-59199932 Msa0691160:CDS
CTCCTGAATAATGTCTTGTT+AGG 0.361650 4_4:-59202778 Msa0691160:five_prime_UTR
TTACTTACCTCTCAATATTA+CGG 0.369926 4_4:-59202328 Msa0691160:five_prime_UTR
GGCTGATTCAAAATCTCCTT+GGG 0.370234 4_4:-59199827 Msa0691160:CDS
ATGATGAAGTTTGAATATTA+TGG 0.371436 4_4:+59200736 None:intergenic
TTTCATCAAGAGAGAATGAT+AGG 0.372720 4_4:+59200432 None:intergenic
CTGTATGATTTGTCTGAATC+AGG 0.373706 4_4:+59202230 None:intergenic
AATTGTGATGATTTGCGGTT+AGG 0.374258 4_4:+59200629 None:intergenic
GATATGCAGCTGAAATTAAG+AGG 0.384094 4_4:-59199658 Msa0691160:CDS
GCATGCCAGCACAATTTGAT+TGG 0.387959 4_4:+59201314 None:intergenic
AATCTCCATTGATGCTGCTT+TGG 0.391558 4_4:+59194945 None:intergenic
AGTCAGAGATTGAATTGAAA+AGG 0.391809 4_4:+59200555 None:intergenic
ACCAAAAGACAAACCCCTTT+GGG 0.401857 4_4:-59200801 Msa0691160:CDS
AATAGGAAAGCTGCTCAATA+GGG 0.404598 4_4:+59202411 None:intergenic
GCAGTTGCTAAACATCTATA+TGG 0.407126 4_4:-59198820 Msa0691160:CDS
CACCAAAAGACAAACCCCTT+TGG 0.410996 4_4:-59200802 Msa0691160:CDS
CAAAATCTAAGGGGTTAGAT+AGG 0.412591 4_4:+59199752 None:intergenic
TCATGCTAACTTGTGTCTTA+AGG 0.412598 4_4:-59201874 Msa0691160:five_prime_UTR
TTACAGGGGATGAATGGTTC+GGG 0.416671 4_4:-59202832 Msa0691160:five_prime_UTR
ATGCATTGCTTCTTATAAAC+CGG 0.418010 4_4:+59202727 None:intergenic
GCCAGTGGAACCTATGGCTT+TGG 0.419946 4_4:-59198755 Msa0691160:CDS
AGGCTGATTCAAAATCTCCT+TGG 0.423311 4_4:-59199828 Msa0691160:CDS
AAAACTTCGATGAATGGAAT+AGG 0.424562 4_4:-59202604 Msa0691160:five_prime_UTR
GAGGAGAAGCGTGGATTGAT+AGG 0.424660 4_4:+59201082 None:intergenic
CATAAACGTGGCTCTTGAAC+GGG 0.426416 4_4:+59201485 None:intergenic
TTTACAGGGGATGAATGGTT+CGG 0.426759 4_4:-59202833 Msa0691160:five_prime_UTR
ATAAAGATGGAAATATGAAA+TGG 0.432943 4_4:-59200946 Msa0691160:CDS
ATCTAAGGGGTTAGATAGGC+TGG 0.434061 4_4:+59199756 None:intergenic
CGAGGAGTACGTGAGCATTT+GGG 0.440133 4_4:-59202435 Msa0691160:five_prime_UTR
ATTATTCTTGAAAATACAAA+TGG 0.443660 4_4:+59202917 None:intergenic
CATATCCAAAGCAGCATCAA+TGG 0.444606 4_4:-59194950 Msa0691160:CDS
TGGTGATGGTTACTCTCTCA+TGG 0.446072 4_4:-59200708 Msa0691160:CDS
ATTCAATCTCTGACTTTGGA+TGG 0.446849 4_4:-59200547 Msa0691160:CDS
CAATAAATGATGTGATTACT+GGG 0.449069 4_4:-59199981 Msa0691160:CDS
GCAAGAACATCAAATTCAAC+AGG 0.450264 4_4:-59199910 Msa0691160:CDS
TTATAAACCGGTTAAAATGT+TGG 0.453798 4_4:+59202739 None:intergenic
CCTTCCTCACCATTCCATAT+AGG 0.456878 4_4:+59200485 None:intergenic
TTAACAATTGTGATGATTTG+CGG 0.460575 4_4:+59200624 None:intergenic
ATAGCTTGAGAGTCATCAAT+TGG 0.464600 4_4:+59201130 None:intergenic
GTTACAACCCAAGAAAATAT+CGG 0.470172 4_4:-59203011 Msa0691160:five_prime_UTR
GCGATGAAAACTTCGATGAA+TGG 0.471298 4_4:-59202610 Msa0691160:five_prime_UTR
GCACCGCTTAAATGGTTTCA+AGG 0.471357 4_4:+59202145 None:intergenic
AACTTAGTCCCCAAATAGTT+CGG 0.473024 4_4:-59202497 Msa0691160:five_prime_UTR
AGGGGTTAGATAGGCTGGCT+TGG 0.474507 4_4:+59199761 None:intergenic
ATAAAATACAAGCCTTTCAC+AGG 0.476240 4_4:+59198724 None:intergenic
AACATCAAATTCAACAGGAT+TGG 0.477689 4_4:-59199905 Msa0691160:CDS
GTCAGAGATTGAATTGAAAA+GGG 0.482491 4_4:+59200556 None:intergenic
TGTCAAAGATATTAATAGAA+AGG 0.483733 4_4:-59200826 Msa0691160:CDS
GAGCCACGTTTATGATCAAA+AGG 0.484061 4_4:-59201476 Msa0691160:five_prime_UTR
ATAACAATCAAGTCTAAGCT+TGG 0.484750 4_4:-59200407 Msa0691160:CDS
TTGTCATGTCCAATTTGATC+GGG 0.484819 4_4:-59198777 Msa0691160:CDS
TTTGATTGGATCCTCACATC+TGG 0.485042 4_4:+59201328 None:intergenic
TAAATTCATGCCGATCGACT+TGG 0.485962 4_4:+59202110 None:intergenic
AACAATCTATGGAGAAAGAG+AGG 0.486420 4_4:-59194899 Msa0691160:three_prime_UTR
GATCGGGCCAGTGGAACCTA+TGG 0.490902 4_4:-59198761 Msa0691160:CDS
TGCTTTGGATATGATTTCAA+AGG 0.491056 4_4:+59194960 None:intergenic
AATAGGAACGTAGGTGGTGA+TGG 0.493998 4_4:-59202587 Msa0691160:five_prime_UTR
GTTGATAATACAAGACAAGA+AGG 0.495127 4_4:-59202255 Msa0691160:five_prime_UTR
CTGATTCAGACAAATCATAC+AGG 0.497927 4_4:-59202229 Msa0691160:five_prime_UTR
CATCAAAGCACGATAACTAA+AGG 0.505253 4_4:+59202676 None:intergenic
GCCAAAGCCATAGGTTCCAC+TGG 0.507030 4_4:+59198754 None:intergenic
TGGTTGTTGAATTATGTGTT+TGG 0.508896 4_4:+59202937 None:intergenic
TGTCCTAAAAGCACATGTTA+GGG 0.509562 4_4:-59201731 Msa0691160:five_prime_UTR
AAAAGGGAGAATATGGTTGA+AGG 0.512885 4_4:+59200572 None:intergenic
GGATGGTTTGCCAAAGCCAT+AGG 0.516215 4_4:+59198745 None:intergenic
TTCGGAAACTACAAACTATG+AGG 0.518149 4_4:-59202479 Msa0691160:five_prime_UTR
GATAACATGAATTTCCCAAA+GGG 0.518182 4_4:+59200787 None:intergenic
GCTTTCCAAACAAAATCTAA+GGG 0.520219 4_4:+59199742 None:intergenic
CTCTTTACCTTGAGAACTAG+AGG 0.525721 4_4:-59202304 Msa0691160:five_prime_UTR
GGAAAAGACAAAGGAAGAGA+AGG 0.525790 4_4:+59200650 None:intergenic
TTGGCAAACCATCCTGTGAA+AGG 0.530246 4_4:-59198736 Msa0691160:CDS
GTGTAAGCAGCATTGCTTGT+TGG 0.533388 4_4:+59200758 None:intergenic
AATACAAGCCTTTCACAGGA+TGG 0.535235 4_4:+59198728 None:intergenic
CTTCATCATGCACTTGGTGA+TGG 0.536861 4_4:-59200722 Msa0691160:CDS
TTCAAACTTCATCATGCACT+TGG 0.538549 4_4:-59200728 Msa0691160:CDS
GTTGTCATGTCCAATTTGAT+CGG 0.545850 4_4:-59198778 Msa0691160:CDS
TCGGAAACTACAAACTATGA+GGG 0.546239 4_4:-59202478 Msa0691160:five_prime_UTR
TTGCTTAGTACCAGAAACAT+TGG 0.547150 4_4:-59199880 Msa0691160:CDS
CAAATATTATAAGCCAACAT+TGG 0.549483 4_4:+59194607 None:intergenic
GAAATATAATGAAATTGTGC+TGG 0.552134 4_4:-59201364 Msa0691160:five_prime_UTR
GGTGATGGTTACTCTCTCAT+GGG 0.557425 4_4:-59200707 Msa0691160:CDS
CAGGAGTTAAGACTCGGTCC+TGG 0.558018 4_4:+59202795 None:intergenic
AGAGGTATTAAAACCGTACA+TGG 0.559155 4_4:-59201678 Msa0691160:five_prime_UTR
TACCCTTGAAACCATTTAAG+CGG 0.559906 4_4:-59202148 Msa0691160:five_prime_UTR
GTGCACAGTGCATTAATCAA+TGG 0.560012 4_4:-59201254 Msa0691160:exon
TCATAAACGTGGCTCTTGAA+CGG 0.561870 4_4:+59201484 None:intergenic
CACCGCTTAAATGGTTTCAA+GGG 0.566664 4_4:+59202146 None:intergenic
CCTATATGGAATGGTGAGGA+AGG 0.567496 4_4:-59200485 Msa0691160:CDS
AGTTCACATTCTAAACCACT+TGG 0.567838 4_4:-59194678 Msa0691160:three_prime_UTR
GAGAAATGTAGTACAAGTGA+GGG 0.567943 4_4:-59202565 Msa0691160:five_prime_UTR
GATAAATCACCTATATGGAA+TGG 0.568282 4_4:-59200494 Msa0691160:CDS
AAACATATGAACATAGGGGT+GGG 0.568437 4_4:+59201176 None:intergenic
AGTATTCAATGCCATTGTCT+AGG 0.569604 4_4:-59194866 Msa0691160:three_prime_UTR
GTCCAATTTGATCGGGCCAG+TGG 0.573799 4_4:-59198770 Msa0691160:CDS
AACATATGAACATAGGGGTG+GGG 0.578033 4_4:+59201177 None:intergenic
AAAGGGAGAATATGGTTGAA+GGG 0.579274 4_4:+59200573 None:intergenic
GTGTTGAAGTATTGTCCACT+TGG 0.580390 4_4:+59201199 None:intergenic
TGTCTAATACAAGAGTGTAT+CGG 0.584998 4_4:+59202978 None:intergenic
GAATTAATGTCCAAGTCGAT+CGG 0.588207 4_4:-59202120 Msa0691160:five_prime_UTR
TTGATAATACAAGACAAGAA+GGG 0.591111 4_4:-59202254 Msa0691160:five_prime_UTR
TACAAATTTAAGTACGAATG+TGG 0.592931 4_4:-59201545 Msa0691160:five_prime_UTR
TAAATTGTGATAAATGTCGC+CGG 0.593757 4_4:+59201603 None:intergenic
TATAATGTCTGGTGCACCTG+AGG 0.596961 4_4:-59198704 Msa0691160:intron
AGGATCCAATCAAATTGTGC+TGG 0.597120 4_4:-59201319 Msa0691160:five_prime_UTR
TGATAACATGAATTTCCCAA+AGG 0.599231 4_4:+59200786 None:intergenic
ATAGGAAAGCTGCTCAATAG+GGG 0.604634 4_4:+59202412 None:intergenic
TGATAATACAAGACAAGAAG+GGG 0.613226 4_4:-59202253 Msa0691160:five_prime_UTR
TGTAGTTTCCGAACTATTTG+GGG 0.616475 4_4:+59202489 None:intergenic
ACAATCTATGGAGAAAGAGA+GGG 0.619841 4_4:-59194898 Msa0691160:three_prime_UTR
TGATAGGTAAGAAAACATGT+TGG 0.624540 4_4:+59201098 None:intergenic
AAAACATATGAACATAGGGG+TGG 0.625827 4_4:+59201175 None:intergenic
ATAATGAAACTCCTAGACAA+TGG 0.625979 4_4:+59194855 None:intergenic
GGAGAAATGTAGTACAAGTG+AGG 0.625988 4_4:-59202566 Msa0691160:five_prime_UTR
ATATAGGTGAGAGATAAAGA+TGG 0.627429 4_4:-59200959 Msa0691160:intron
AAAAGTACGTACTATTATGG+AGG 0.629039 4_4:+59201063 None:intergenic
ACTATTATGGAGGAGAAGCG+TGG 0.633661 4_4:+59201073 None:intergenic
CTTTCCAAACAAAATCTAAG+GGG 0.635519 4_4:+59199743 None:intergenic
GATAGGTTTGATAGTGCACA+AGG 0.635737 4_4:+59200449 None:intergenic
ACAGAAGTTCAAGTTGTGCA+TGG 0.637970 4_4:-59194989 Msa0691160:CDS
ATCAATCCAAGATATGACAA+AGG 0.639015 4_4:-59199848 Msa0691160:CDS
TCTTTACCTTGAGAACTAGA+GGG 0.639077 4_4:-59202303 Msa0691160:five_prime_UTR
AAAGAGACCGTAATATTGAG+AGG 0.639137 4_4:+59202321 None:intergenic
GCTGAAATTAAGAGGACATG+AGG 0.640508 4_4:-59199650 Msa0691160:intron
CGGGAGTTAGGACCCAAACC+AGG 0.640930 4_4:-59202813 Msa0691160:five_prime_UTR
ACTGAGCCAGTAAGTCCAAG+TGG 0.642613 4_4:-59201214 Msa0691160:CDS
ATTATTCAGGAGTTAAGACT+CGG 0.647511 4_4:+59202789 None:intergenic
CAATTGTTAACTCCCAAGAG+AGG 0.649160 4_4:-59200611 Msa0691160:CDS
ATCACCTATATGGAATGGTG+AGG 0.649181 4_4:-59200489 Msa0691160:CDS
AATCAAGTCTAAGCTTGGAG+TGG 0.650359 4_4:-59200402 Msa0691160:intron
TGAATGTCACACCAGATGTG+AGG 0.650593 4_4:-59201339 Msa0691160:five_prime_UTR
CTGATTCAAAATCTCCTTGG+GGG 0.654193 4_4:-59199825 Msa0691160:CDS
GCTGATTCAAAATCTCCTTG+GGG 0.657580 4_4:-59199826 Msa0691160:CDS
ATAACATGAATTTCCCAAAG+GGG 0.659712 4_4:+59200788 None:intergenic
TTTAATGGAAACTCGAGTCG+AGG 0.663207 4_4:-59202453 Msa0691160:five_prime_UTR
AGGTGTTGTGAAATTCCAAG+TGG 0.663720 4_4:+59194663 None:intergenic
CGGAAACTACAAACTATGAG+GGG 0.665464 4_4:-59202477 Msa0691160:five_prime_UTR
CAATCTATGGAGAAAGAGAG+GGG 0.667613 4_4:-59194897 Msa0691160:three_prime_UTR
GAATGGAATAGGAACGTAGG+TGG 0.668764 4_4:-59202593 Msa0691160:five_prime_UTR
TTGCGGTTAGGAAAAGACAA+AGG 0.670319 4_4:+59200641 None:intergenic
TGATTCAGACAAATCATACA+GGG 0.684733 4_4:-59202228 Msa0691160:five_prime_UTR
GTATGGTCACACGACTGACA+TGG 0.695441 4_4:+59201565 None:intergenic
GATGAATGGAATAGGAACGT+AGG 0.699956 4_4:-59202596 Msa0691160:five_prime_UTR
AATAAATGATGTGATTACTG+GGG 0.709233 4_4:-59199980 Msa0691160:CDS
AATCTATGGAGAAAGAGAGG+GGG 0.731182 4_4:-59194896 Msa0691160:three_prime_UTR
AGAAATGTAGTACAAGTGAG+GGG 0.733383 4_4:-59202564 Msa0691160:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTTTTTTTAATAAAAAAATA+TGG + chr4_4:59198034-59198053 None:intergenic 0.0%
!!! TTTTAATTTTTTTTTTAAAA+AGG - chr4_4:59198386-59198405 Msa0691160:intron 0.0%
!!! AACAAATTTTTTTTTTTACA+GGG - chr4_4:59194790-59194809 Msa0691160:three_prime_UTR 10.0%
!!! AATTTTCTGTTATTTTATTT+AGG + chr4_4:59195468-59195487 None:intergenic 10.0%
!! TAAAAATAAAAATTCAAGTA+GGG - chr4_4:59195655-59195674 Msa0691160:intron 10.0%
!! TGTTATATAAAATTATTGTA+AGG + chr4_4:59196623-59196642 None:intergenic 10.0%
!! TTTATATACAATTTGTATAT+TGG - chr4_4:59197267-59197286 Msa0691160:intron 10.0%
!! TAATTAAAAAACTATAACTA+AGG + chr4_4:59197413-59197432 None:intergenic 10.0%
!!! TAATTTTTTTTTTAAAAAGG+TGG - chr4_4:59198389-59198408 Msa0691160:intron 10.0%
!! AATGAATATATGAAAATTAA+AGG - chr4_4:59199265-59199284 Msa0691160:intron 10.0%
!! ATTAAATATATTAATGATCA+AGG + chr4_4:59199453-59199472 None:intergenic 10.0%
!!! ATTGTTAATCATTTAAAATT+TGG - chr4_4:59201631-59201650 Msa0691160:five_prime_UTR 10.0%
!!! GAAAAAAAAAATTTTTTTGA+AGG + chr4_4:59201748-59201767 None:intergenic 10.0%
!!! AATTAAAACTGAAAAATTTT+CGG - chr4_4:59201852-59201871 Msa0691160:five_prime_UTR 10.0%
!! AAAAATTGTAAAAAAAATTC+GGG - chr4_4:59201877-59201896 Msa0691160:five_prime_UTR 10.0%
!!! AAAACTGAATTTTTTTTTTA+AGG - chr4_4:59201902-59201921 Msa0691160:five_prime_UTR 10.0%
!!! ATTGTTAATCATTTAAAATT+TGG + chr4_4:59201631-59201650 None:intergenic 10.0%
!! TTTCTTGTTAAAAAATAAAA+AGG + chr4_4:59202455-59202474 None:intergenic 10.0%
!! ATAATTCATTATTTATTGTT+TGG - chr4_4:59202866-59202885 Msa0691160:five_prime_UTR 10.0%
!! ATTATTCTTGAAAATACAAA+TGG + chr4_4:59194723-59194742 None:intergenic 15.0%
!!! CAACAAATTTTTTTTTTTAC+AGG - chr4_4:59194789-59194808 Msa0691160:three_prime_UTR 15.0%
!!! ACAAATTTTTTTTTTTACAG+GGG - chr4_4:59194791-59194810 Msa0691160:three_prime_UTR 15.0%
!! CTTATTTGATAAAAGTTAAT+AGG + chr4_4:59195246-59195265 None:intergenic 15.0%
!! AAAAAAAATCCAAAATGATT+TGG - chr4_4:59195360-59195379 Msa0691160:intron 15.0%
!! CTAAAAATAAAAATTCAAGT+AGG - chr4_4:59195654-59195673 Msa0691160:intron 15.0%
!! TACATTAAGTAAAAAAAACA+AGG + chr4_4:59195936-59195955 None:intergenic 15.0%
!!! TTTTTACTTAATGTAAAAAG+AGG - chr4_4:59195941-59195960 Msa0691160:intron 15.0%
!! ATTACACGATAAAATATTAA+AGG + chr4_4:59198574-59198593 None:intergenic 15.0%
!! TATTCTTATTCATCTTAATT+AGG + chr4_4:59199013-59199032 None:intergenic 15.0%
!! TTCTAACTAAAAATATAGAA+TGG + chr4_4:59199367-59199386 None:intergenic 15.0%
!!! TCATTTTGAAACAATTTTTT+TGG + chr4_4:59199991-59200010 None:intergenic 15.0%
!! AAATTATCCTTATTAACTAT+TGG + chr4_4:59200117-59200136 None:intergenic 15.0%
!! AATAGTTAATAAGGATAATT+TGG - chr4_4:59200116-59200135 Msa0691160:intron 15.0%
!!! TTTTGAGTTATTTTACAAAA+GGG + chr4_4:59200478-59200497 None:intergenic 15.0%
!!! ATTTTGAGTTATTTTACAAA+AGG + chr4_4:59200479-59200498 None:intergenic 15.0%
!! AAATAACTTAGTTCAATAAA+AGG - chr4_4:59201193-59201212 Msa0691160:CDS 15.0%
!! AATAACTTAGTTCAATAAAA+GGG - chr4_4:59201194-59201213 Msa0691160:CDS 15.0%
!!! ATTAAAACTGAAAAATTTTC+GGG - chr4_4:59201853-59201872 Msa0691160:five_prime_UTR 15.0%
!!! AAAACAATTTGTTAAACTAA+TGG + chr4_4:59202165-59202184 None:intergenic 15.0%
!!! CTAACAAATTGTTTTTTTTT+TGG + chr4_4:59202301-59202320 None:intergenic 15.0%
!!! TGTATATTAATTAAGTTTTG+TGG - chr4_4:59202924-59202943 Msa0691160:five_prime_UTR 15.0%
!! ACTAAAATAGCTTATAAATA+AGG + chr4_4:59202997-59203016 None:intergenic 15.0%
!! ACACTATTTGTAAAAAACAT+AGG - chr4_4:59194993-59195012 Msa0691160:CDS 20.0%
!! TGTTTCATTAGAAATTGATT+TGG + chr4_4:59195274-59195293 None:intergenic 20.0%
!!! TATTATCAACCAAATCATTT+TGG + chr4_4:59195372-59195391 None:intergenic 20.0%
!! AAAAACAAGAGTTTAATAAG+AGG - chr4_4:59195724-59195743 Msa0691160:intron 20.0%
!!! TTAAAATGAAACTTTTGTGT+AGG + chr4_4:59195873-59195892 None:intergenic 20.0%
!!! TTATTTTATGACAAAAGAAG+AGG - chr4_4:59196224-59196243 Msa0691160:intron 20.0%
!! AGACTATGTAAAACAAATAA+TGG - chr4_4:59196251-59196270 Msa0691160:intron 20.0%
!!! TTCATATGTTTTTGGATTTT+TGG - chr4_4:59196473-59196492 Msa0691160:intron 20.0%
!!! ATAAAAAGTACGTACTATTA+TGG + chr4_4:59196580-59196599 None:intergenic 20.0%
!! ATAAAGATGGAAATATGAAA+TGG - chr4_4:59196691-59196710 Msa0691160:intron 20.0%
!!! AAATCCAAAAGATCATTTTA+AGG - chr4_4:59196728-59196747 Msa0691160:intron 20.0%
!! TGTCAAAGATATTAATAGAA+AGG - chr4_4:59196811-59196830 Msa0691160:intron 20.0%
!! ATGATGAAGTTTGAATATTA+TGG + chr4_4:59196904-59196923 None:intergenic 20.0%
!!! ATATGTTCATACAATTTGTT+AGG - chr4_4:59197384-59197403 Msa0691160:intron 20.0%
!!! AATATTTTATCGTGTAATGT+CGG - chr4_4:59198576-59198595 Msa0691160:intron 20.0%
!! TAACGATATAGAATAGAAAT+GGG + chr4_4:59199169-59199188 None:intergenic 20.0%
!! GAATATATGAAAATTAAAGG+TGG - chr4_4:59199268-59199287 Msa0691160:intron 20.0%
!! ACTAAAAATATAGAATGGAA+TGG + chr4_4:59199362-59199381 None:intergenic 20.0%
!!! TAAGACAAATTTTAGTATGT+GGG + chr4_4:59199537-59199556 None:intergenic 20.0%
!!! TTAAGACAAATTTTAGTATG+TGG + chr4_4:59199538-59199557 None:intergenic 20.0%
!! TTGCAACATGTATTAAAAAA+CGG - chr4_4:59199612-59199631 Msa0691160:intron 20.0%
!! TAAATAATGTTAAACATCCA+TGG - chr4_4:59199708-59199727 Msa0691160:CDS 20.0%
!! AAGTAGTAATTAATGCTAAT+TGG + chr4_4:59199910-59199929 None:intergenic 20.0%
!! AGGGAGTAATATATAATTAA+GGG + chr4_4:59199942-59199961 None:intergenic 20.0%
!! AGAAAAAGTTATTATTGCAT+TGG + chr4_4:59200030-59200049 None:intergenic 20.0%
!!! TAAAAGTAATACTTTGAAAG+TGG + chr4_4:59200087-59200106 None:intergenic 20.0%
!! AAACTAACCAATAGTTAATA+AGG - chr4_4:59200107-59200126 Msa0691160:intron 20.0%
!! CATTAATAGAAACTTTGTAT+TGG + chr4_4:59200415-59200434 None:intergenic 20.0%
!! CAATACAAAGTTTCTATTAA+TGG - chr4_4:59200413-59200432 Msa0691160:CDS 20.0%
!!! AATAAATAAGAGTATGTTAG+AGG - chr4_4:59200641-59200660 Msa0691160:CDS 20.0%
!! TTAAATGATTAACAATTGCA+GGG + chr4_4:59202020-59202039 None:intergenic 20.0%
!! TTTAAATGATTAACAATTGC+AGG + chr4_4:59202019-59202038 None:intergenic 20.0%
!! TTTAAATGATTAACAATTGC+AGG - chr4_4:59202019-59202038 Msa0691160:five_prime_UTR 20.0%
!! TTAAATGATTAACAATTGCA+GGG - chr4_4:59202020-59202039 Msa0691160:five_prime_UTR 20.0%
!!! ACAACTAACATTAATTTTTC+AGG + chr4_4:59202222-59202241 None:intergenic 20.0%
!!! TCAACTAACATTAATTTTTC+AGG - chr4_4:59202250-59202269 Msa0691160:five_prime_UTR 20.0%
!! TCAAAAGAAAACCATTTATT+AGG - chr4_4:59202326-59202345 Msa0691160:five_prime_UTR 20.0%
!!! CATTTCATCTTTTTTTTGTT+GGG + chr4_4:59202718-59202737 None:intergenic 20.0%
!!! TCATTTCATCTTTTTTTTGT+TGG + chr4_4:59202719-59202738 None:intergenic 20.0%
!!! TTTAGTTTCAGCAATAAAAA+GGG - chr4_4:59202817-59202836 Msa0691160:five_prime_UTR 20.0%
!! TATTTATAATGTACCTCAAT+TGG - chr4_4:59202891-59202910 Msa0691160:five_prime_UTR 20.0%
! ACTTCATATCCAAGATTAAA+TGG + chr4_4:59194608-59194627 None:intergenic 25.0%
!!! ATGAGTTTTGATATTGTTGT+TGG + chr4_4:59194760-59194779 None:intergenic 25.0%
!! GTCTTGTTAGGTTAAATAAA+AGG - chr4_4:59194871-59194890 Msa0691160:three_prime_UTR 25.0%
! TTATAAACCGGTTAAAATGT+TGG + chr4_4:59194901-59194920 None:intergenic 25.0%
! TTACTTACCTCTCAATATTA+CGG - chr4_4:59195309-59195328 Msa0691160:intron 25.0%
!! TTGATAATACAAGACAAGAA+GGG - chr4_4:59195383-59195402 Msa0691160:intron 25.0%
!! TTTTTCTATCTTTGGTCATT+TGG + chr4_4:59195709-59195728 None:intergenic 25.0%
!!! AACTCTTGTTTTTCTATCTT+TGG + chr4_4:59195717-59195736 None:intergenic 25.0%
! CATTCGTACTTAAATTTGTA+TGG + chr4_4:59196092-59196111 None:intergenic 25.0%
! TACAAATTTAAGTACGAATG+TGG - chr4_4:59196092-59196111 Msa0691160:intron 25.0%
! GAAATATAATGAAATTGTGC+TGG - chr4_4:59196273-59196292 Msa0691160:intron 25.0%
! TCCAAAAACATATGAACATA+GGG + chr4_4:59196469-59196488 None:intergenic 25.0%
! ATCCAAAAACATATGAACAT+AGG + chr4_4:59196470-59196489 None:intergenic 25.0%
! TATGAAATGGAAAAAAGTAG+AGG - chr4_4:59196704-59196723 Msa0691160:intron 25.0%
!!! AATTCAACTGACTCATTTTT+GGG + chr4_4:59196765-59196784 None:intergenic 25.0%
! TTAACAATTGTGATGATTTG+CGG + chr4_4:59197016-59197035 None:intergenic 25.0%
! AAGATGATAAATCACCTATA+TGG - chr4_4:59197138-59197157 Msa0691160:intron 25.0%
! ACATTTAAATGTGGAGAAAT+GGG - chr4_4:59197487-59197506 Msa0691160:intron 25.0%
!!! AGTTCTAACATAGTGTTTTT+TGG - chr4_4:59197624-59197643 Msa0691160:intron 25.0%
! ACAATAAATGATGTGATTAC+TGG - chr4_4:59197655-59197674 Msa0691160:intron 25.0%
! CAATAAATGATGTGATTACT+GGG - chr4_4:59197656-59197675 Msa0691160:intron 25.0%
! AATAAATGATGTGATTACTG+GGG - chr4_4:59197657-59197676 Msa0691160:intron 25.0%
! AAGCACAAAAAATAATCAAG+AGG - chr4_4:59197914-59197933 Msa0691160:intron 25.0%
!!! TCAAAAACTTTTGACTTGTT+TGG + chr4_4:59198087-59198106 None:intergenic 25.0%
!! TGTACATTCAGAGTAATTTT+GGG - chr4_4:59198167-59198186 Msa0691160:intron 25.0%
!! AAGAAAGAGTGTGTTAAAAT+AGG + chr4_4:59198607-59198626 None:intergenic 25.0%
!! AGTTGCATTCATTTTCAAAA+TGG + chr4_4:59198670-59198689 None:intergenic 25.0%
! AAATGTTAAAATCAGTGTTG+CGG - chr4_4:59198730-59198749 Msa0691160:CDS 25.0%
!! AGGCTTTTTATAAATAAGAG+AGG + chr4_4:59198993-59199012 None:intergenic 25.0%
!! AGTTTCTGGAAAATATTTCA+TGG - chr4_4:59199140-59199159 Msa0691160:intron 25.0%
! CTAACGATATAGAATAGAAA+TGG + chr4_4:59199170-59199189 None:intergenic 25.0%
! ACGACATGCATTAAAAAAAA+TGG + chr4_4:59199333-59199352 None:intergenic 25.0%
! AACATGTATTAAAAAACGGA+GGG - chr4_4:59199616-59199635 Msa0691160:intron 25.0%
! TCTTGACAGTTCATAATAAA+AGG - chr4_4:59199672-59199691 Msa0691160:CDS 25.0%
!! GATTTATTGACAAGTGTTTT+AGG + chr4_4:59199768-59199787 None:intergenic 25.0%
! CCATTGAAATCAAAACTTAA+TGG + chr4_4:59199805-59199824 None:intergenic 25.0%
!!! CCATTAAGTTTTGATTTCAA+TGG - chr4_4:59199802-59199821 Msa0691160:CDS 25.0%
! AAGCCAATTATAATTTAGGA+CGG + chr4_4:59199847-59199866 None:intergenic 25.0%
!! TCCTAAATTATAATTGGCTT+TGG - chr4_4:59199847-59199866 Msa0691160:CDS 25.0%
! TCCAAAGCCAATTATAATTT+AGG + chr4_4:59199851-59199870 None:intergenic 25.0%
! GAGGGAGTAATATATAATTA+AGG + chr4_4:59199943-59199962 None:intergenic 25.0%
! AATGATTAAGAGAAAGAGAA+TGG + chr4_4:59200150-59200169 None:intergenic 25.0%
! AAAACTCGCTAAAAACAAAA+AGG - chr4_4:59200871-59200890 Msa0691160:CDS 25.0%
! TTAAATCTAGTCATATGTGT+AGG + chr4_4:59200959-59200978 None:intergenic 25.0%
! AAATAGAAAAACGAGTTAGA+GGG - chr4_4:59201217-59201236 Msa0691160:CDS 25.0%
!! TGTTAGCATACCTTAATTTT+AGG - chr4_4:59201523-59201542 Msa0691160:five_prime_UTR 25.0%
!! TACCTTAATTTTAGGCTTAA+TGG - chr4_4:59201531-59201550 Msa0691160:five_prime_UTR 25.0%
! TAAATGATTAACAATTGCAG+GGG + chr4_4:59202021-59202040 None:intergenic 25.0%
! GAAAAAAAAAATTAGACCAG+GGG + chr4_4:59201726-59201745 None:intergenic 25.0%
! GGAAAAAAAAAATTAGACCA+GGG + chr4_4:59201727-59201746 None:intergenic 25.0%
! AGGAAAAAAAAAATTAGACC+AGG + chr4_4:59201728-59201747 None:intergenic 25.0%
! TTAAGGAAAAAAAATAAGCC+AGG - chr4_4:59201919-59201938 Msa0691160:five_prime_UTR 25.0%
! TAAGGAAAAAAAATAAGCCA+GGG - chr4_4:59201920-59201939 Msa0691160:five_prime_UTR 25.0%
! TAAATGATTAACAATTGCAG+GGG - chr4_4:59202021-59202040 Msa0691160:five_prime_UTR 25.0%
! GATTACGTATTCCTAATAAA+TGG + chr4_4:59202340-59202359 None:intergenic 25.0%
! TTATTAGGAATACGTAATCA+AGG - chr4_4:59202341-59202360 Msa0691160:five_prime_UTR 25.0%
! TATTAGGAATACGTAATCAA+GGG - chr4_4:59202342-59202361 Msa0691160:five_prime_UTR 25.0%
!! TAACAATTCTCATATTGGTT+AGG - chr4_4:59202366-59202385 Msa0691160:five_prime_UTR 25.0%
! AAGATGAAATGAACAATCTA+TGG - chr4_4:59202727-59202746 Msa0691160:five_prime_UTR 25.0%
!! GTTTAGTTTCAGCAATAAAA+AGG - chr4_4:59202816-59202835 Msa0691160:five_prime_UTR 25.0%
! CAAATATTATAAGCCAACAT+TGG + chr4_4:59203033-59203052 None:intergenic 25.0%
! AATGGAATTGAGAGCATATA+AGG + chr4_4:59194590-59194609 None:intergenic 30.0%
CTCTCAATTCCATTTAATCT+TGG - chr4_4:59194596-59194615 Msa0691160:three_prime_UTR 30.0%
GTTACAACCCAAGAAAATAT+CGG - chr4_4:59194626-59194645 Msa0691160:three_prime_UTR 30.0%
! CTAACTACCGATATTTTCTT+GGG + chr4_4:59194636-59194655 None:intergenic 30.0%
! TCTAACTACCGATATTTTCT+TGG + chr4_4:59194637-59194656 None:intergenic 30.0%
! TGTCTAATACAAGAGTGTAT+CGG + chr4_4:59194662-59194681 None:intergenic 30.0%
TGGTTGTTGAATTATGTGTT+TGG + chr4_4:59194703-59194722 None:intergenic 30.0%
!!! TTTTTTTTACAGGGGATGAA+TGG - chr4_4:59194799-59194818 Msa0691160:three_prime_UTR 30.0%
ATTATTCAGGAGTTAAGACT+CGG + chr4_4:59194851-59194870 None:intergenic 30.0%
AACCTAACAAGACATTATTC+AGG + chr4_4:59194864-59194883 None:intergenic 30.0%
ATGCATTGCTTCTTATAAAC+CGG + chr4_4:59194913-59194932 None:intergenic 30.0%
AAAACTTCGATGAATGGAAT+AGG - chr4_4:59195033-59195052 Msa0691160:CDS 30.0%
TTGTAGTTTCCGAACTATTT+GGG + chr4_4:59195152-59195171 None:intergenic 30.0%
TTTGTAGTTTCCGAACTATT+TGG + chr4_4:59195153-59195172 None:intergenic 30.0%
!! GTTGATAATACAAGACAAGA+AGG - chr4_4:59195382-59195401 Msa0691160:intron 30.0%
TGATAATACAAGACAAGAAG+GGG - chr4_4:59195384-59195403 Msa0691160:intron 30.0%
TGATTCAGACAAATCATACA+GGG - chr4_4:59195409-59195428 Msa0691160:intron 30.0%
CCAAAAATTTACACCATGTA+CGG + chr4_4:59195975-59195994 None:intergenic 30.0%
!!! TGTAAATTTTTGGTTGAAGC+AGG - chr4_4:59195982-59196001 Msa0691160:intron 30.0%
! ATCATTTTCGTACATATTGC+CGG - chr4_4:59196015-59196034 Msa0691160:intron 30.0%
TAAATTGTGATAAATGTCGC+CGG + chr4_4:59196037-59196056 None:intergenic 30.0%
! TTTCCTTTTGATCATAAACG+TGG + chr4_4:59196167-59196186 None:intergenic 30.0%
! TGCACTTGTATTTTCAATGT+TGG + chr4_4:59196368-59196387 None:intergenic 30.0%
CCAAAAACATATGAACATAG+GGG + chr4_4:59196468-59196487 None:intergenic 30.0%
TGATAGGTAAGAAAACATGT+TGG + chr4_4:59196542-59196561 None:intergenic 30.0%
! AAAAGTACGTACTATTATGG+AGG + chr4_4:59196577-59196596 None:intergenic 30.0%
TTATCTCTCACCTATATACA+TGG + chr4_4:59196675-59196694 None:intergenic 30.0%
ATATAGGTGAGAGATAAAGA+TGG - chr4_4:59196678-59196697 Msa0691160:intron 30.0%
! GGAACCTTAAAATGATCTTT+TGG + chr4_4:59196735-59196754 None:intergenic 30.0%
!! ATTCAACTGACTCATTTTTG+GGG + chr4_4:59196764-59196783 None:intergenic 30.0%
!! GAATTCAACTGACTCATTTT+TGG + chr4_4:59196766-59196785 None:intergenic 30.0%
ATAACATGAATTTCCCAAAG+GGG + chr4_4:59196852-59196871 None:intergenic 30.0%
GATAACATGAATTTCCCAAA+GGG + chr4_4:59196853-59196872 None:intergenic 30.0%
TGATAACATGAATTTCCCAA+AGG + chr4_4:59196854-59196873 None:intergenic 30.0%
TGAATTGAAAAGGGAGAATA+TGG + chr4_4:59197075-59197094 None:intergenic 30.0%
GTCAGAGATTGAATTGAAAA+GGG + chr4_4:59197084-59197103 None:intergenic 30.0%
AGTCAGAGATTGAATTGAAA+AGG + chr4_4:59197085-59197104 None:intergenic 30.0%
TTCAATTCAATCTCTGACTT+TGG - chr4_4:59197086-59197105 Msa0691160:intron 30.0%
GATAAATCACCTATATGGAA+TGG - chr4_4:59197143-59197162 Msa0691160:intron 30.0%
TTTCATCAAGAGAGAATGAT+AGG + chr4_4:59197208-59197227 None:intergenic 30.0%
ATAACAATCAAGTCTAAGCT+TGG - chr4_4:59197230-59197249 Msa0691160:intron 30.0%
! TTTTTGATCAAATAGCCTAG+TGG - chr4_4:59197453-59197472 Msa0691160:intron 30.0%
CACATTTAAATGTGGAGAAA+TGG - chr4_4:59197486-59197505 Msa0691160:intron 30.0%
CATTTAAATGTGGAGAAATG+GGG - chr4_4:59197488-59197507 Msa0691160:intron 30.0%
AACATTGCATAATACATGCA+GGG + chr4_4:59197536-59197555 None:intergenic 30.0%
! ATTACTGGGGTAATTTTCTA+TGG - chr4_4:59197670-59197689 Msa0691160:intron 30.0%
! TTACTGGGGTAATTTTCTAT+GGG - chr4_4:59197671-59197690 Msa0691160:intron 30.0%
AACATCAAATTCAACAGGAT+TGG - chr4_4:59197732-59197751 Msa0691160:intron 30.0%
TTGTCATATCTTGGATTGAT+TGG + chr4_4:59197789-59197808 None:intergenic 30.0%
ATCAATCCAAGATATGACAA+AGG - chr4_4:59197789-59197808 Msa0691160:intron 30.0%
CTTTCCAAACAAAATCTAAG+GGG + chr4_4:59197897-59197916 None:intergenic 30.0%
GCTTTCCAAACAAAATCTAA+GGG + chr4_4:59197898-59197917 None:intergenic 30.0%
TGCTTTCCAAACAAAATCTA+AGG + chr4_4:59197899-59197918 None:intergenic 30.0%
! GTGTACATTCAGAGTAATTT+TGG - chr4_4:59198166-59198185 Msa0691160:intron 30.0%
! GTACATTCAGAGTAATTTTG+GGG - chr4_4:59198168-59198187 Msa0691160:intron 30.0%
CTAGAAGTAAAGAAGCTTAA+GGG + chr4_4:59198208-59198227 None:intergenic 30.0%
TCTAGAAGTAAAGAAGCTTA+AGG + chr4_4:59198209-59198228 None:intergenic 30.0%
AGCTATAAAATATGTGTTGC+AGG - chr4_4:59198795-59198814 Msa0691160:CDS 30.0%
ATAAAATACAAGCCTTTCAC+AGG + chr4_4:59198916-59198935 None:intergenic 30.0%
! GGCTTGTATTTTATAATGTC+TGG - chr4_4:59198922-59198941 Msa0691160:intron 30.0%
TACACATCCATAAGTATAGT+AGG - chr4_4:59199105-59199124 Msa0691160:intron 30.0%
TTGAACTCCTACTATACTTA+TGG + chr4_4:59199115-59199134 None:intergenic 30.0%
TAGAGAGAAGTGAAGATAAA+TGG - chr4_4:59199187-59199206 Msa0691160:intron 30.0%
CAACATGTATTAAAAAACGG+AGG - chr4_4:59199615-59199634 Msa0691160:intron 30.0%
CCACACAATTATATTATCCA+TGG + chr4_4:59199728-59199747 None:intergenic 30.0%
CCATGGATAATATAATTGTG+TGG - chr4_4:59199725-59199744 Msa0691160:CDS 30.0%
TCTCCGTCCTAAATTATAAT+TGG - chr4_4:59199841-59199860 Msa0691160:CDS 30.0%
TGTGCATAGTATTAATTGGA+GGG + chr4_4:59200064-59200083 None:intergenic 30.0%
!!! TTCAAAATGAGTGTCGTTTT+AGG + chr4_4:59200198-59200217 None:intergenic 30.0%
!! AAACGACACTCATTTTGAAA+CGG - chr4_4:59200199-59200218 Msa0691160:intron 30.0%
AATTCTTAATCATTGCCCTT+AGG - chr4_4:59200436-59200455 Msa0691160:CDS 30.0%
ATTCTTAATCATTGCCCTTA+GGG - chr4_4:59200437-59200456 Msa0691160:CDS 30.0%
ATTTCTCAATTTGTGCGAAA+TGG - chr4_4:59200525-59200544 Msa0691160:CDS 30.0%
!! GTCGTTTTATGCTATTAACA+TGG + chr4_4:59200924-59200943 None:intergenic 30.0%
TATGACTAGATTTAAGTCTC+CGG - chr4_4:59200964-59200983 Msa0691160:intron 30.0%
! TGTCTTTATTGTTTTCGTTC+AGG + chr4_4:59201090-59201109 None:intergenic 30.0%
GAAATAGAAAAACGAGTTAG+AGG - chr4_4:59201216-59201235 Msa0691160:CDS 30.0%
AATAGAAAAACGAGTTAGAG+GGG - chr4_4:59201218-59201237 Msa0691160:CDS 30.0%
! AGGAGAAGAAACTAGAATTT+TGG - chr4_4:59201290-59201309 Msa0691160:five_prime_UTR 30.0%
!! ATTTGCTATAGCACTTGTTA+AGG + chr4_4:59201466-59201485 None:intergenic 30.0%
CACCATTAAGCCTAAAATTA+AGG + chr4_4:59201536-59201555 None:intergenic 30.0%
AAGGAAAAAAAATAAGCCAG+GGG - chr4_4:59201921-59201940 Msa0691160:five_prime_UTR 30.0%
! TACAGGGACCAATTTTTAAA+TGG - chr4_4:59202065-59202084 Msa0691160:five_prime_UTR 30.0%
AATAGGCGCCATTTAAAAAT+TGG + chr4_4:59202076-59202095 None:intergenic 30.0%
AGGGATAACAATTCTCATAT+TGG - chr4_4:59202361-59202380 Msa0691160:five_prime_UTR 30.0%
! AATTCTCATATTGGTTAGGA+TGG - chr4_4:59202370-59202389 Msa0691160:five_prime_UTR 30.0%
TCACAAAGAATAGCATGTTA+TGG + chr4_4:59202545-59202564 None:intergenic 30.0%
! TGCTTTGGATATGATTTCAA+AGG + chr4_4:59202680-59202699 None:intergenic 30.0%
ATAATGAAACTCCTAGACAA+TGG + chr4_4:59202785-59202804 None:intergenic 30.0%
TTATAATGTACCTCAATTGG+AGG - chr4_4:59202894-59202913 Msa0691160:five_prime_UTR 30.0%
!! TAAGTTTTGTGGACTAAGTT+TGG - chr4_4:59202935-59202954 Msa0691160:five_prime_UTR 30.0%
! CTCACAATTTTATCCAATGT+TGG - chr4_4:59203017-59203036 Msa0691160:five_prime_UTR 30.0%
! CTCCTGAATAATGTCTTGTT+AGG - chr4_4:59194859-59194878 Msa0691160:three_prime_UTR 35.0%
!! AGGCAAACCAACATTTTAAC+CGG - chr4_4:59194891-59194910 Msa0691160:three_prime_UTR 35.0%
CATCAAAGCACGATAACTAA+AGG + chr4_4:59194964-59194983 None:intergenic 35.0%
GAGAAATGTAGTACAAGTGA+GGG - chr4_4:59195072-59195091 Msa0691160:intron 35.0%
AGAAATGTAGTACAAGTGAG+GGG - chr4_4:59195073-59195092 Msa0691160:intron 35.0%
AACTTAGTCCCCAAATAGTT+CGG - chr4_4:59195140-59195159 Msa0691160:intron 35.0%
TGTAGTTTCCGAACTATTTG+GGG + chr4_4:59195151-59195170 None:intergenic 35.0%
TTCGGAAACTACAAACTATG+AGG - chr4_4:59195158-59195177 Msa0691160:intron 35.0%
TCGGAAACTACAAACTATGA+GGG - chr4_4:59195159-59195178 Msa0691160:intron 35.0%
AATAGGAAAGCTGCTCAATA+GGG + chr4_4:59195229-59195248 None:intergenic 35.0%
TAATAGGAAAGCTGCTCAAT+AGG + chr4_4:59195230-59195249 None:intergenic 35.0%
AAAGAGACCGTAATATTGAG+AGG + chr4_4:59195319-59195338 None:intergenic 35.0%
TCTTTACCTTGAGAACTAGA+GGG - chr4_4:59195334-59195353 Msa0691160:intron 35.0%
!!! TTTTTACCCTCTAGTTCTCA+AGG + chr4_4:59195343-59195362 None:intergenic 35.0%
! CTGTATGATTTGTCTGAATC+AGG + chr4_4:59195410-59195429 None:intergenic 35.0%
CTGATTCAGACAAATCATAC+AGG - chr4_4:59195408-59195427 Msa0691160:intron 35.0%
TACCCTTGAAACCATTTAAG+CGG - chr4_4:59195489-59195508 Msa0691160:intron 35.0%
GAATTAATGTCCAAGTCGAT+CGG - chr4_4:59195517-59195536 Msa0691160:intron 35.0%
! TCATGCTAACTTGTGTCTTA+AGG - chr4_4:59195763-59195782 Msa0691160:intron 35.0%
! ATGTCCTAAAAGCACATGTT+AGG - chr4_4:59195905-59195924 Msa0691160:intron 35.0%
! TGTCCTAAAAGCACATGTTA+GGG - chr4_4:59195906-59195925 Msa0691160:intron 35.0%
! AAACCCTAACATGTGCTTTT+AGG + chr4_4:59195912-59195931 None:intergenic 35.0%
!! AGAGGTATTAAAACCGTACA+TGG - chr4_4:59195959-59195978 Msa0691160:intron 35.0%
! CCGTACATGGTGTAAATTTT+TGG - chr4_4:59195972-59195991 Msa0691160:intron 35.0%
! GTATTTTCAATGTTGGCACT+GGG + chr4_4:59196361-59196380 None:intergenic 35.0%
! TGTATTTTCAATGTTGGCAC+TGG + chr4_4:59196362-59196381 None:intergenic 35.0%
AAACATATGAACATAGGGGT+GGG + chr4_4:59196464-59196483 None:intergenic 35.0%
AAAACATATGAACATAGGGG+TGG + chr4_4:59196465-59196484 None:intergenic 35.0%
! CCCCTATGTTCATATGTTTT+TGG - chr4_4:59196465-59196484 Msa0691160:intron 35.0%
ATAGCTTGAGAGTCATCAAT+TGG + chr4_4:59196510-59196529 None:intergenic 35.0%
ATGCATGCAACCATGTATAT+AGG - chr4_4:59196662-59196681 Msa0691160:intron 35.0%
TTCAAACTTCATCATGCACT+TGG - chr4_4:59196909-59196928 Msa0691160:intron 35.0%
! AATTGTGATGATTTGCGGTT+AGG + chr4_4:59197011-59197030 None:intergenic 35.0%
AAAGGGAGAATATGGTTGAA+GGG + chr4_4:59197067-59197086 None:intergenic 35.0%
AAAAGGGAGAATATGGTTGA+AGG + chr4_4:59197068-59197087 None:intergenic 35.0%
ATTCAATCTCTGACTTTGGA+TGG - chr4_4:59197090-59197109 Msa0691160:intron 35.0%
ACATTGCATAATACATGCAG+GGG + chr4_4:59197535-59197554 None:intergenic 35.0%
GAACATTGCATAATACATGC+AGG + chr4_4:59197537-59197556 None:intergenic 35.0%
! GGGTAATTTTCTATGGGATT+AGG - chr4_4:59197677-59197696 Msa0691160:intron 35.0%
CATGCAAGAGATTGACAATA+AGG - chr4_4:59197705-59197724 Msa0691160:intron 35.0%
GCAAGAACATCAAATTCAAC+AGG - chr4_4:59197727-59197746 Msa0691160:intron 35.0%
TTGCTTAGTACCAGAAACAT+TGG - chr4_4:59197757-59197776 Msa0691160:intron 35.0%
! TTGGTAACTTCCAATGTTTC+TGG + chr4_4:59197770-59197789 None:intergenic 35.0%
AATCAGCCTTTGTCATATCT+TGG + chr4_4:59197798-59197817 None:intergenic 35.0%
AAAGAAATATGATTCCCCCA+AGG + chr4_4:59197829-59197848 None:intergenic 35.0%
CAAAATCTAAGGGGTTAGAT+AGG + chr4_4:59197888-59197907 None:intergenic 35.0%
! CTAACCCCTTAGATTTTGTT+TGG - chr4_4:59197890-59197909 Msa0691160:intron 35.0%
!! TCACTGTTTTTCTCACTGAA+TGG - chr4_4:59197950-59197969 Msa0691160:intron 35.0%
GATATGCAGCTGAAATTAAG+AGG - chr4_4:59197979-59197998 Msa0691160:intron 35.0%
TCTGAATGTACACATCTGAA+GGG + chr4_4:59198159-59198178 None:intergenic 35.0%
!!! ATTCAGAGTAATTTTGGGGT+GGG - chr4_4:59198172-59198191 Msa0691160:intron 35.0%
TTGAACTGTGAACAAAGAGA+TGG - chr4_4:59198265-59198284 Msa0691160:intron 35.0%
AAAGGTGGTGAGTAAAACAT+TGG - chr4_4:59198404-59198423 Msa0691160:intron 35.0%
AATAGATTGTTACGAGTGTG+TGG - chr4_4:59198489-59198508 Msa0691160:intron 35.0%
! TTTCTAGTGCAATTCTTGTG+TGG + chr4_4:59198542-59198561 None:intergenic 35.0%
GCAGTTGCTAAACATCTATA+TGG - chr4_4:59198817-59198836 Msa0691160:CDS 35.0%
GTTGTCATGTCCAATTTGAT+CGG - chr4_4:59198859-59198878 Msa0691160:intron 35.0%
TTGTCATGTCCAATTTGATC+GGG - chr4_4:59198860-59198879 Msa0691160:intron 35.0%
! AAAAGATGATGGTTTACCTC+AGG + chr4_4:59198952-59198971 None:intergenic 35.0%
! AAACCATCATCTTTTCTCTC+TGG - chr4_4:59198957-59198976 Msa0691160:intron 35.0%
AAACCAGAGAGAAAAGATGA+TGG + chr4_4:59198963-59198982 None:intergenic 35.0%
! ATGCATTGACATGTTTGAAG+TGG + chr4_4:59199428-59199447 None:intergenic 35.0%
!! AAGCGACACTCATTTTGAAA+CGG + chr4_4:59199965-59199984 None:intergenic 35.0%
GTGTGCATAGTATTAATTGG+AGG + chr4_4:59200065-59200084 None:intergenic 35.0%
GTGGTGTGCATAGTATTAAT+TGG + chr4_4:59200068-59200087 None:intergenic 35.0%
GTCCAAACGACCTATAATTT+GGG - chr4_4:59200547-59200566 Msa0691160:CDS 35.0%
AAACGACCTATAATTTGGGA+CGG - chr4_4:59200551-59200570 Msa0691160:CDS 35.0%
GCAGATCAAATCAATGACTT+TGG + chr4_4:59201026-59201045 None:intergenic 35.0%
GGTATTTGTTCGATTCAGAT+TGG + chr4_4:59201069-59201088 None:intergenic 35.0%
AATAGGCGGCGTTTAAAAAT+TGG - chr4_4:59201571-59201590 Msa0691160:five_prime_UTR 35.0%
CAGATTAGCAAAAATGGCAT+GGG - chr4_4:59201686-59201705 Msa0691160:five_prime_UTR 35.0%
!!! AAATTAGACCAGGGGTATTT+TGG + chr4_4:59201718-59201737 None:intergenic 35.0%
CAGATTAGCAAAAATGGCAT+GGG + chr4_4:59201686-59201705 None:intergenic 35.0%
CATCACCAGATTAGCAAAAA+TGG + chr4_4:59201967-59201986 None:intergenic 35.0%
!! TTTTTGCTAATCTGGTGATG+TGG - chr4_4:59201967-59201986 Msa0691160:five_prime_UTR 35.0%
!! TGATGTGGCATTGATTAAGT+TGG - chr4_4:59201982-59202001 Msa0691160:five_prime_UTR 35.0%
!! GCATTGATTAAGTTGGTCAA+AGG - chr4_4:59201989-59202008 Msa0691160:five_prime_UTR 35.0%
TGTCTTTAGTCCTTGCAAAT+AGG + chr4_4:59202093-59202112 None:intergenic 35.0%
AACAATCTATGGAGAAAGAG+AGG - chr4_4:59202738-59202757 Msa0691160:five_prime_UTR 35.0%
ACAATCTATGGAGAAAGAGA+GGG - chr4_4:59202739-59202758 Msa0691160:five_prime_UTR 35.0%
AGTATTCAATGCCATTGTCT+AGG - chr4_4:59202771-59202790 Msa0691160:five_prime_UTR 35.0%
AGTTCACATTCTAAACCACT+TGG - chr4_4:59202959-59202978 Msa0691160:five_prime_UTR 35.0%
TTTACAGGGGATGAATGGTT+CGG - chr4_4:59194804-59194823 Msa0691160:three_prime_UTR 40.0%
GCGATGAAAACTTCGATGAA+TGG - chr4_4:59195027-59195046 Msa0691160:CDS 40.0%
GATGAATGGAATAGGAACGT+AGG - chr4_4:59195041-59195060 Msa0691160:CDS 40.0%
GGAGAAATGTAGTACAAGTG+AGG - chr4_4:59195071-59195090 Msa0691160:intron 40.0%
CGGAAACTACAAACTATGAG+GGG - chr4_4:59195160-59195179 Msa0691160:intron 40.0%
! CAAACTATGAGGGGCTTTAA+TGG - chr4_4:59195169-59195188 Msa0691160:intron 40.0%
TTTAATGGAAACTCGAGTCG+AGG - chr4_4:59195184-59195203 Msa0691160:intron 40.0%
ATAGGAAAGCTGCTCAATAG+GGG + chr4_4:59195228-59195247 None:intergenic 40.0%
CTCTTTACCTTGAGAACTAG+AGG - chr4_4:59195333-59195352 Msa0691160:intron 40.0%
CACCGCTTAAATGGTTTCAA+GGG + chr4_4:59195494-59195513 None:intergenic 40.0%
! TAATTCGAGCACCGCTTAAA+TGG + chr4_4:59195503-59195522 None:intergenic 40.0%
TAAATTCATGCCGATCGACT+TGG + chr4_4:59195530-59195549 None:intergenic 40.0%
TCATAAACGTGGCTCTTGAA+CGG + chr4_4:59196156-59196175 None:intergenic 40.0%
GAGCCACGTTTATGATCAAA+AGG - chr4_4:59196161-59196180 Msa0691160:intron 40.0%
TTTGATTGGATCCTCACATC+TGG + chr4_4:59196312-59196331 None:intergenic 40.0%
AGGATCCAATCAAATTGTGC+TGG - chr4_4:59196318-59196337 Msa0691160:intron 40.0%
GTGCACAGTGCATTAATCAA+TGG - chr4_4:59196383-59196402 Msa0691160:intron 40.0%
TATTGTCCACTTGGACTTAC+TGG + chr4_4:59196432-59196451 None:intergenic 40.0%
!! GTGTTGAAGTATTGTCCACT+TGG + chr4_4:59196441-59196460 None:intergenic 40.0%
AACATATGAACATAGGGGTG+GGG + chr4_4:59196463-59196482 None:intergenic 40.0%
!! GACTCATTTTTGGGGAACAT+TGG + chr4_4:59196756-59196775 None:intergenic 40.0%
ACCAAAAGACAAACCCCTTT+GGG - chr4_4:59196836-59196855 Msa0691160:intron 40.0%
GGAAAAGACAAAGGAAGAGA+AGG + chr4_4:59196990-59197009 None:intergenic 40.0%
TTGCGGTTAGGAAAAGACAA+AGG + chr4_4:59196999-59197018 None:intergenic 40.0%
CAATTGTTAACTCCCAAGAG+AGG - chr4_4:59197026-59197045 Msa0691160:intron 40.0%
CACTTGAAAAAGCCTCTCTT+GGG + chr4_4:59197041-59197060 None:intergenic 40.0%
ATCACCTATATGGAATGGTG+AGG - chr4_4:59197148-59197167 Msa0691160:intron 40.0%
!! GATAGGTTTGATAGTGCACA+AGG + chr4_4:59197191-59197210 None:intergenic 40.0%
AATCAAGTCTAAGCTTGGAG+TGG - chr4_4:59197235-59197254 Msa0691160:intron 40.0%
GGAGGTCACACATTTAAATG+TGG - chr4_4:59197478-59197497 Msa0691160:intron 40.0%
! AGGCTGATTCAAAATCTCCT+TGG - chr4_4:59197809-59197828 Msa0691160:intron 40.0%
! GGCTGATTCAAAATCTCCTT+GGG - chr4_4:59197810-59197829 Msa0691160:intron 40.0%
! GCTGATTCAAAATCTCCTTG+GGG - chr4_4:59197811-59197830 Msa0691160:intron 40.0%
CTGATTCAAAATCTCCTTGG+GGG - chr4_4:59197812-59197831 Msa0691160:intron 40.0%
!!! GCTTGGCTTAATTTTGGGAT+TGG + chr4_4:59197862-59197881 None:intergenic 40.0%
GCTGAAATTAAGAGGACATG+AGG - chr4_4:59197987-59198006 Msa0691160:intron 40.0%
CTGAATGTACACATCTGAAG+GGG + chr4_4:59198158-59198177 None:intergenic 40.0%
CTCTGAATGTACACATCTGA+AGG + chr4_4:59198160-59198179 None:intergenic 40.0%
!! CATTCAGAGTAATTTTGGGG+TGG - chr4_4:59198171-59198190 Msa0691160:intron 40.0%
GAAGTAAAGAAGCTTAAGGG+AGG + chr4_4:59198205-59198224 None:intergenic 40.0%
AATACAAGCCTTTCACAGGA+TGG + chr4_4:59198912-59198931 None:intergenic 40.0%
!! ATCTTTTCTCTCTGGTTTGC+TGG - chr4_4:59198965-59198984 Msa0691160:intron 40.0%
GGAGTTCAAGAGTAAGTTTC+TGG - chr4_4:59199126-59199145 Msa0691160:intron 40.0%
!!! GACACTCATTTTGAAACGGA+GGG + chr4_4:59200203-59200222 None:intergenic 40.0%
!!! GACACTCATTTTGAAACGGA+GGG - chr4_4:59200203-59200222 Msa0691160:intron 40.0%
TACTTTAACCAATGCCCCAA+GGG + chr4_4:59200323-59200342 None:intergenic 40.0%
GGTCCAAACGACCTATAATT+TGG - chr4_4:59200546-59200565 Msa0691160:CDS 40.0%
GTCCCAAATTATAGGTCGTT+TGG + chr4_4:59200552-59200571 None:intergenic 40.0%
AATCGTCCGTCCCAAATTAT+AGG + chr4_4:59200560-59200579 None:intergenic 40.0%
!! GTCATTGATTTGATCTGCAC+TGG - chr4_4:59201028-59201047 Msa0691160:intron 40.0%
CATGATTTCGTCGTCTTAGT+GGG + chr4_4:59201149-59201168 None:intergenic 40.0%
TCATGATTTCGTCGTCTTAG+TGG + chr4_4:59201150-59201169 None:intergenic 40.0%
!! GCAGTGATTAAGTTGGTCAA+AGG + chr4_4:59201658-59201677 None:intergenic 40.0%
!! TTTTTGCTAATCTGGTGACG+TGG + chr4_4:59201680-59201699 None:intergenic 40.0%
CGTCACCAGATTAGCAAAAA+TGG - chr4_4:59201680-59201699 Msa0691160:five_prime_UTR 40.0%
!!! CCATGCCATTTTTGCTAATC+TGG + chr4_4:59201959-59201978 None:intergenic 40.0%
CCAGATTAGCAAAAATGGCA+TGG - chr4_4:59201685-59201704 Msa0691160:five_prime_UTR 40.0%
CCAGATTAGCAAAAATGGCA+TGG + chr4_4:59201685-59201704 None:intergenic 40.0%
!!! CCATGCCATTTTTGCTAATC+TGG - chr4_4:59201959-59201978 Msa0691160:five_prime_UTR 40.0%
TTAAATGGCGCCTATTTGCA+AGG - chr4_4:59202080-59202099 Msa0691160:five_prime_UTR 40.0%
!! ACAGAAGTTCAAGTTGTGCA+TGG - chr4_4:59202648-59202667 Msa0691160:five_prime_UTR 40.0%
CATATCCAAAGCAGCATCAA+TGG - chr4_4:59202687-59202706 Msa0691160:five_prime_UTR 40.0%
! AATCTCCATTGATGCTGCTT+TGG + chr4_4:59202695-59202714 None:intergenic 40.0%
CAATCTATGGAGAAAGAGAG+GGG - chr4_4:59202740-59202759 Msa0691160:five_prime_UTR 40.0%
AATCTATGGAGAAAGAGAGG+GGG - chr4_4:59202741-59202760 Msa0691160:five_prime_UTR 40.0%
ACATGACATTCCTCCAATTG+AGG + chr4_4:59202907-59202926 None:intergenic 40.0%
! AGGTGTTGTGAAATTCCAAG+TGG + chr4_4:59202977-59202996 None:intergenic 40.0%
TTACAGGGGATGAATGGTTC+GGG - chr4_4:59194805-59194824 Msa0691160:three_prime_UTR 45.0%
! TTAAGACTCGGTCCTGGTTT+GGG + chr4_4:59194839-59194858 None:intergenic 45.0%
GAATGGAATAGGAACGTAGG+TGG - chr4_4:59195044-59195063 Msa0691160:CDS 45.0%
AATAGGAACGTAGGTGGTGA+TGG - chr4_4:59195050-59195069 Msa0691160:CDS 45.0%
! TAGTACAAGTGAGGGGCTTT+TGG - chr4_4:59195080-59195099 Msa0691160:intron 45.0%
! GGGACTAAGTTTTCATCGCT+CGG + chr4_4:59195131-59195150 None:intergenic 45.0%
GCACCGCTTAAATGGTTTCA+AGG + chr4_4:59195495-59195514 None:intergenic 45.0%
CATAAACGTGGCTCTTGAAC+GGG + chr4_4:59196155-59196174 None:intergenic 45.0%
TGAATGTCACACCAGATGTG+AGG - chr4_4:59196298-59196317 Msa0691160:intron 45.0%
GCATGCCAGCACAATTTGAT+TGG + chr4_4:59196326-59196345 None:intergenic 45.0%
ACTATTATGGAGGAGAAGCG+TGG + chr4_4:59196567-59196586 None:intergenic 45.0%
CACCAAAAGACAAACCCCTT+TGG - chr4_4:59196835-59196854 Msa0691160:intron 45.0%
! TCCCAAAGGGGTTTGTCTTT+TGG + chr4_4:59196840-59196859 None:intergenic 45.0%
GTGTAAGCAGCATTGCTTGT+TGG + chr4_4:59196882-59196901 None:intergenic 45.0%
! CTTCATCATGCACTTGGTGA+TGG - chr4_4:59196915-59196934 Msa0691160:intron 45.0%
!! TGGTGATGGTTACTCTCTCA+TGG - chr4_4:59196929-59196948 Msa0691160:intron 45.0%
! GGTGATGGTTACTCTCTCAT+GGG - chr4_4:59196930-59196949 Msa0691160:intron 45.0%
CCACTTGAAAAAGCCTCTCT+TGG + chr4_4:59197042-59197061 None:intergenic 45.0%
!!! CCAAGAGAGGCTTTTTCAAG+TGG - chr4_4:59197039-59197058 Msa0691160:intron 45.0%
CCTTCCTCACCATTCCATAT+AGG + chr4_4:59197155-59197174 None:intergenic 45.0%
CCTATATGGAATGGTGAGGA+AGG - chr4_4:59197152-59197171 Msa0691160:intron 45.0%
TGATCAAATAGCCTAGTGGC+TGG - chr4_4:59197457-59197476 Msa0691160:intron 45.0%
TGCATAATACATGCAGGGGT+CGG + chr4_4:59197531-59197550 None:intergenic 45.0%
!!! GGCTGGCTTGGCTTAATTTT+GGG + chr4_4:59197867-59197886 None:intergenic 45.0%
!!! AGGCTGGCTTGGCTTAATTT+TGG + chr4_4:59197868-59197887 None:intergenic 45.0%
ATCTAAGGGGTTAGATAGGC+TGG + chr4_4:59197884-59197903 None:intergenic 45.0%
GCAATTCTTGTGTGGACACA+AGG + chr4_4:59198534-59198553 None:intergenic 45.0%
TTGGCAAACCATCCTGTGAA+AGG - chr4_4:59198901-59198920 Msa0691160:intron 45.0%
TATAATGTCTGGTGCACCTG+AGG - chr4_4:59198933-59198952 Msa0691160:intron 45.0%
!!! CGACACTCATTTTGAAACGG+AGG + chr4_4:59200202-59200221 None:intergenic 45.0%
!!! CGACACTCATTTTGAAACGG+AGG - chr4_4:59200202-59200221 Msa0691160:intron 45.0%
AGAATGCTAACCATTGCCCT+TGG - chr4_4:59200304-59200323 Msa0691160:intron 45.0%
GAATGCTAACCATTGCCCTT+GGG - chr4_4:59200305-59200324 Msa0691160:intron 45.0%
AATGCTAACCATTGCCCTTG+GGG - chr4_4:59200306-59200325 Msa0691160:intron 45.0%
GTACTTTAACCAATGCCCCA+AGG + chr4_4:59200324-59200343 None:intergenic 45.0%
CACCAACTAGGGGTGATTTA+GGG + chr4_4:59201265-59201284 None:intergenic 45.0%
TCTCCTTCATCCACCAACTA+GGG + chr4_4:59201276-59201295 None:intergenic 45.0%
TTCTCCTTCATCCACCAACT+AGG + chr4_4:59201277-59201296 None:intergenic 45.0%
GATGACTCACAAGAGAGAGA+AGG - chr4_4:59201314-59201333 Msa0691160:five_prime_UTR 45.0%
TGTGTTTCACCCCTGCAAAT+AGG - chr4_4:59201554-59201573 Msa0691160:five_prime_UTR 45.0%
TTAAACGCCGCCTATTTGCA+GGG + chr4_4:59201567-59201586 None:intergenic 45.0%
TTTAAACGCCGCCTATTTGC+AGG + chr4_4:59201568-59201587 None:intergenic 45.0%
! TGCCAGGATTAGCGATTACA+GGG + chr4_4:59202049-59202068 None:intergenic 45.0%
! ATGCCAGGATTAGCGATTAC+AGG + chr4_4:59202048-59202067 None:intergenic 45.0%
AATTGCAGGGGTAAAATGCC+AGG + chr4_4:59202033-59202052 None:intergenic 45.0%
TGACGTGGCAGTGATTAAGT+TGG + chr4_4:59201665-59201684 None:intergenic 45.0%
GGAATTGACCAAAATACCCC+TGG - chr4_4:59201707-59201726 Msa0691160:five_prime_UTR 45.0%
GGAATTGACGAAATTACCCC+TGG + chr4_4:59201940-59201959 None:intergenic 45.0%
AATTGCAGGGGTAAAATGCC+AGG - chr4_4:59202033-59202052 Msa0691160:five_prime_UTR 45.0%
! ATGCCAGGATTAGCGATTAC+AGG - chr4_4:59202048-59202067 Msa0691160:five_prime_UTR 45.0%
! TGCCAGGATTAGCGATTACA+GGG - chr4_4:59202049-59202068 Msa0691160:five_prime_UTR 45.0%
!!! AATATTTTATATTTTCTTTT+AGG - chr4_4:59198230-59198249 Msa0691160:intron 5.0%
!!! AATAAAGAATAATTTTTTAA+AGG - chr4_4:59200281-59200300 Msa0691160:intron 5.0%
!!! TTATAAAGATAAAATTATTT+TGG - chr4_4:59200689-59200708 Msa0691160:CDS 5.0%
!!! TATAAAGATAAAATTATTTT+GGG - chr4_4:59200690-59200709 Msa0691160:CDS 5.0%
!! AAAAAATTGTAAAAAAAATT+CGG - chr4_4:59201876-59201895 Msa0691160:five_prime_UTR 5.0%
!! TAATCTTAATAATAAAATTA+TGG + chr4_4:59202124-59202143 None:intergenic 5.0%
! GGATGAATGGTTCGGGAGTT+AGG - chr4_4:59194812-59194831 Msa0691160:three_prime_UTR 50.0%
! GTTAAGACTCGGTCCTGGTT+TGG + chr4_4:59194840-59194859 None:intergenic 50.0%
! ACAAGTGAGGGGCTTTTGGA+TGG - chr4_4:59195084-59195103 Msa0691160:intron 50.0%
! CAAGTGAGGGGCTTTTGGAT+GGG - chr4_4:59195085-59195104 Msa0691160:intron 50.0%
! TCGAGGAGTACGTGAGCATT+TGG - chr4_4:59195201-59195220 Msa0691160:intron 50.0%
! CGAGGAGTACGTGAGCATTT+GGG - chr4_4:59195202-59195221 Msa0691160:intron 50.0%
GTATGGTCACACGACTGACA+TGG + chr4_4:59196075-59196094 None:intergenic 50.0%
ACTGAGCCAGTAAGTCCAAG+TGG - chr4_4:59196423-59196442 Msa0691160:intron 50.0%
! GAGGAGAAGCGTGGATTGAT+AGG + chr4_4:59196558-59196577 None:intergenic 50.0%
!! GCTATAGTAGGGTGTTGCTG+CGG + chr4_4:59197348-59197367 None:intergenic 50.0%
GCAGCAACACCCTACTATAG+CGG - chr4_4:59197347-59197366 Msa0691160:intron 50.0%
GATCCTCCACCGCTATAGTA+GGG + chr4_4:59197359-59197378 None:intergenic 50.0%
AGATCCTCCACCGCTATAGT+AGG + chr4_4:59197360-59197379 None:intergenic 50.0%
TCAAATAGCCTAGTGGCTGG+AGG - chr4_4:59197460-59197479 Msa0691160:intron 50.0%
CATAATACATGCAGGGGTCG+GGG + chr4_4:59197529-59197548 None:intergenic 50.0%
GCATAATACATGCAGGGGTC+GGG + chr4_4:59197530-59197549 None:intergenic 50.0%
TTCCACTGGCCCGATCAAAT+TGG + chr4_4:59198872-59198891 None:intergenic 50.0%
! GGATGGTTTGCCAAAGCCAT+AGG + chr4_4:59198895-59198914 None:intergenic 50.0%
AATCATTGCCCTTAGGGCAC+TGG - chr4_4:59200443-59200462 Msa0691160:CDS 50.0%
CTTGCTAACCAGTGCCCTAA+GGG + chr4_4:59200454-59200473 None:intergenic 50.0%
TCTTGCTAACCAGTGCCCTA+AGG + chr4_4:59200455-59200474 None:intergenic 50.0%
AGAGAGAGAGAGAGAGAGAG+AGG - chr4_4:59200746-59200765 Msa0691160:CDS 50.0%
ATCCGGAGACATGGGTATTC+CGG + chr4_4:59200986-59201005 None:intergenic 50.0%
AGTCATCAGCGTTGCAGATC+CGG + chr4_4:59201003-59201022 None:intergenic 50.0%
GACCCTAAATCACCCCTAGT+TGG - chr4_4:59201260-59201279 Msa0691160:five_prime_UTR 50.0%
CCACCAACTAGGGGTGATTT+AGG + chr4_4:59201266-59201285 None:intergenic 50.0%
CCTAAATCACCCCTAGTTGG+TGG - chr4_4:59201263-59201282 Msa0691160:five_prime_UTR 50.0%
CTCCTTCATCCACCAACTAG+GGG + chr4_4:59201275-59201294 None:intergenic 50.0%
GTTTCACCCCTGCAAATAGG+CGG - chr4_4:59201557-59201576 Msa0691160:five_prime_UTR 50.0%
TAAACGCCGCCTATTTGCAG+GGG + chr4_4:59201566-59201585 None:intergenic 50.0%
GTCCCTGTAATCGCTAATCC+TGG - chr4_4:59201593-59201612 Msa0691160:five_prime_UTR 50.0%
GTCCCTGTAATCGCTAATCC+TGG + chr4_4:59201593-59201612 None:intergenic 50.0%
! CAGGAGTTAAGACTCGGTCC+TGG + chr4_4:59194845-59194864 None:intergenic 55.0%
! TGAGGGGCTTTTGGATGGGT+CGG - chr4_4:59195089-59195108 Msa0691160:intron 55.0%
GATCCTCTACCACTGCAGTG+TGG - chr4_4:59197292-59197311 Msa0691160:intron 55.0%
ACACCACACTGCAGTGGTAG+AGG + chr4_4:59197298-59197317 None:intergenic 55.0%
GCTACAACACCACACTGCAG+TGG + chr4_4:59197304-59197323 None:intergenic 55.0%
!! AGTAGGGTGTTGCTGCGGTA+GGG + chr4_4:59197343-59197362 None:intergenic 55.0%
!! TAGTAGGGTGTTGCTGCGGT+AGG + chr4_4:59197344-59197363 None:intergenic 55.0%
GCAACACCCTACTATAGCGG+TGG - chr4_4:59197350-59197369 Msa0691160:intron 55.0%
ACACCCTACTATAGCGGTGG+AGG - chr4_4:59197353-59197372 Msa0691160:intron 55.0%
ATGTGTGACCTCCAGCCACT+AGG + chr4_4:59197471-59197490 None:intergenic 55.0%
AGGGGTCGGGGTTCAAACAT+CGG + chr4_4:59197517-59197536 None:intergenic 55.0%
CCTCGCGAGCTTAGCTCAAT+TGG + chr4_4:59197563-59197582 None:intergenic 55.0%
CCAATTGAGCTAAGCTCGCG+AGG - chr4_4:59197560-59197579 Msa0691160:intron 55.0%
! AGGGGTTAGATAGGCTGGCT+TGG + chr4_4:59197879-59197898 None:intergenic 55.0%
GTCCAATTTGATCGGGCCAG+TGG - chr4_4:59198867-59198886 Msa0691160:intron 55.0%
GCCAGTGGAACCTATGGCTT+TGG - chr4_4:59198882-59198901 Msa0691160:intron 55.0%
GCCAAAGCCATAGGTTCCAC+TGG + chr4_4:59198886-59198905 None:intergenic 55.0%
AACCATTGCCCTTGGGGCAT+TGG - chr4_4:59200312-59200331 Msa0691160:intron 55.0%
AACCAATGCCCCAAGGGCAA+TGG + chr4_4:59200317-59200336 None:intergenic 55.0%
CTCCGGAATACCCATGTCTC+CGG - chr4_4:59200981-59201000 Msa0691160:intron 55.0%
CGTTGCAGATCCGGAGACAT+GGG + chr4_4:59200994-59201013 None:intergenic 55.0%
!! CACCCCTAGTTGGTGGATGA+AGG - chr4_4:59201270-59201289 Msa0691160:five_prime_UTR 55.0%
CGGGAGTTAGGACCCAAACC+AGG - chr4_4:59194824-59194843 Msa0691160:three_prime_UTR 60.0%
! GAGGGGCTTTTGGATGGGTC+GGG - chr4_4:59195090-59195109 Msa0691160:intron 60.0%
GATCGGGCCAGTGGAACCTA+TGG - chr4_4:59198876-59198895 Msa0691160:intron 60.0%
GCGTTGCAGATCCGGAGACA+TGG + chr4_4:59200995-59201014 None:intergenic 60.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 59194583 59203076 59194583 ID=Msa0691160;Name=Msa0691160
chr4_4 mRNA 59194583 59203076 59194583 ID=Msa0691160-mRNA-1;Parent=Msa0691160;Name=Msa0691160-mRNA-1;_AED=0.31;_eAED=0.31;_QI=1819|1|1|1|0.8|0.66|6|296|471
chr4_4 exon 59194583 59194734 59194583 ID=Msa0691160-mRNA-1:exon:16075;Parent=Msa0691160-mRNA-1
chr4_4 exon 59194777 59195088 59194777 ID=Msa0691160-mRNA-1:exon:16074;Parent=Msa0691160-mRNA-1
chr4_4 exon 59198705 59198842 59198705 ID=Msa0691160-mRNA-1:exon:16073;Parent=Msa0691160-mRNA-1
chr4_4 exon 59199651 59200004 59199651 ID=Msa0691160-mRNA-1:exon:16072;Parent=Msa0691160-mRNA-1
chr4_4 exon 59200403 59200975 59200403 ID=Msa0691160-mRNA-1:exon:16071;Parent=Msa0691160-mRNA-1
chr4_4 exon 59201075 59203076 59201075 ID=Msa0691160-mRNA-1:exon:16070;Parent=Msa0691160-mRNA-1
chr4_4 five_prime_UTR 59201258 59203076 59201258 ID=Msa0691160-mRNA-1:five_prime_utr;Parent=Msa0691160-mRNA-1
chr4_4 CDS 59201075 59201257 59201075 ID=Msa0691160-mRNA-1:cds;Parent=Msa0691160-mRNA-1
chr4_4 CDS 59200403 59200975 59200403 ID=Msa0691160-mRNA-1:cds;Parent=Msa0691160-mRNA-1
chr4_4 CDS 59199651 59200004 59199651 ID=Msa0691160-mRNA-1:cds;Parent=Msa0691160-mRNA-1
chr4_4 CDS 59198705 59198842 59198705 ID=Msa0691160-mRNA-1:cds;Parent=Msa0691160-mRNA-1
chr4_4 CDS 59194921 59195088 59194921 ID=Msa0691160-mRNA-1:cds;Parent=Msa0691160-mRNA-1
chr4_4 three_prime_UTR 59194777 59194920 59194777 ID=Msa0691160-mRNA-1:three_prime_utr;Parent=Msa0691160-mRNA-1
chr4_4 three_prime_UTR 59194583 59194734 59194583 ID=Msa0691160-mRNA-1:three_prime_utr;Parent=Msa0691160-mRNA-1
Gene Sequence

>Msa0691160

ATGGACAACTTTGAAGATGTAACTGAGCCAGTAAGTCCAAGTGGACAATACTTCAACACCCCACCCCTATGTTCATATGTTTTTGGATTTTTGGAATTAGAAATTCCAATTGATGACTCTCAAGCTATGTATTTGATCCAACATGTTTTCTTACCTATCAATCCACGCTTCTCCTCCATAATAGTGAGAGATAAAGATGGAAATATGAAATGGAAAAAAGTAGAGGTAAATCCAAAAGATCATTTTAAGGTTCCAATGTTCCCCAAAAATGAGTCAGTTGAATTCTATGATAAAGATTTTGATGATTATGTGTCAAAGATATTAATAGAAAGGACACCAAAAGACAAACCCCTTTGGGAAATTCATGTTATCAAGTATCCAACAAGCAATGCTGCTTACACCATAATATTCAAACTTCATCATGCACTTGGTGATGGTTACTCTCTCATGGGTGCTCTTCTTTCTTGTCTTCATAGAGCTGATGATCCTTCTCTTCCTTTGTCTTTTCCTAACCGCAAATCATCACAATTGTTAACTCCCAAGAGAGGCTTTTTCAAGTGGTTCCCTTCAACCATATTCTCCCTTTTCAATTCAATCTCTGACTTTGGATGGAGTATATTGAAAAGTTCAATAATTGAAGATGATAAATCACCTATATGGAATGGTGAGGAAGGTTCAGAGTTTCTGCCTTGTGCACTATCAAACCTATCATTCTCTCTTGATGAAATCATAACAATCAAGTCTAAGCTTGGAGTGACAATAAATGATGTGATTACTGGGGTAATTTTCTATGGGATTAGGTTATACATGCAAGAGATTGACAATAAGGCAAGAACATCAAATTCAACAGGATTGGTGTTGCTTAGTACCAGAAACATTGGAAGTTACCAATCAATCCAAGATATGACAAAGGCTGATTCAAAATCTCCTTGGGGGAATCATATTTCTTTCTTACATATACCAATCCCAAAATTAAGCCAAGCCAGCCTATCTAACCCCTTAGATTTTGTTTGGAAAGCACAAAAAATAATCAAGAGGAAGAGAAGTACTTTCACTGTTTTTCTCACTGAATGGCTTTTAGATATGCAGCTGAAATTAAGAGGACATGAGGCAGTTGCTAAACATCTATATGGTACATTGAGAAACTCAAGTGTTGTCATGTCCAATTTGATCGGGCCAGTGGAACCTATGGCTTTGGCAAACCATCCTGTGAAAGGCTTGTATTTTATAATGTCTGGTGCACCTGAGAGTATAGATATTGCAGTTATGAGCTATGCAAGAATATTAAGAATTACTTTGAAAACACAGAAAGACTTAATTGATGAACAGAAGTTCAAGTTGTGCATGGCAAGAGCCTTTGAAATCATATCCAAAGCAGCATCAATGGAGATTCCCAACAAAAAAAAGATGAAATGA
Protein sequence

>Msa0691160

MDNFEDVTEPVSPSGQYFNTPPLCSYVFGFLELEIPIDDSQAMYLIQHVFLPINPRFSSIIVRDKDGNMKWKKVEVNPKDHFKVPMFPKNESVEFYDKDFDDYVSKILIERTPKDKPLWEIHVIKYPTSNAAYTIIFKLHHALGDGYSLMGALLSCLHRADDPSLPLSFPNRKSSQLLTPKRGFFKWFPSTIFSLFNSISDFGWSILKSSIIEDDKSPIWNGEEGSEFLPCALSNLSFSLDEIITIKSKLGVTINDVITGVIFYGIRLYMQEIDNKARTSNSTGLVLLSTRNIGSYQSIQDMTKADSKSPWGNHISFLHIPIPKLSQASLSNPLDFVWKAQKIIKRKRSTFTVFLTEWLLDMQLKLRGHEAVAKHLYGTLRNSSVVMSNLIGPVEPMALANHPVKGLYFIMSGAPESIDIAVMSYARILRITLKTQKDLIDEQKFKLCMARAFEIISKAASMEIPNKKKMK*