AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0714140

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714140 MtrunA17_Chr5g0401431 97.256 328 9 0 1 328 1 328 0.0 659
Msa0714140 MtrunA17_Chr4g0053871 71.037 328 90 1 1 328 1 323 2.08e-177 494
Msa0714140 MtrunA17_Chr4g0072091 67.442 301 95 2 26 326 23 320 4.91e-152 429
Msa0714140 MtrunA17_Chr1g0148021 61.321 318 119 3 12 328 13 327 5.87e-143 407
Msa0714140 MtrunA17_Chr7g0225221 57.492 327 128 5 1 326 1 317 6.33e-129 370
Msa0714140 MtrunA17_Chr8g0364291 44.099 322 176 3 6 325 1 320 1.87e-90 273
Msa0714140 MtrunA17_Chr6g0451571 42.812 320 177 4 11 328 18 333 9.70e-85 259
Msa0714140 MtrunA17_Chr3g0128061 42.947 319 178 3 11 328 10 325 2.03e-84 258
Msa0714140 MtrunA17_Chr1g0197411 41.745 321 178 5 10 325 10 326 1.47e-83 256
Msa0714140 MtrunA17_Chr4g0046131 42.484 306 170 4 26 327 41 344 3.93e-81 250
Msa0714140 MtrunA17_Chr1g0204011 42.679 321 172 8 10 328 11 321 2.87e-80 247
Msa0714140 MtrunA17_Chr2g0292211 41.141 333 187 5 1 328 12 340 1.41e-78 244
Msa0714140 MtrunA17_Chr5g0405991 41.846 325 174 7 7 328 3 315 2.96e-78 241
Msa0714140 MtrunA17_Chr2g0292271 41.456 316 179 4 16 328 17 329 8.19e-78 241
Msa0714140 MtrunA17_Chr2g0292241 41.141 333 187 5 1 328 1 329 2.22e-77 241
Msa0714140 MtrunA17_Chr2g0292261 40.841 333 188 5 1 328 1 329 3.00e-77 240
Msa0714140 MtrunA17_Chr1g0157051 40.303 330 176 7 1 328 7 317 1.67e-76 237
Msa0714140 MtrunA17_Chr8g0371381 42.857 308 163 5 23 328 22 318 1.69e-76 237
Msa0714140 MtrunA17_Chr1g0188431 39.521 334 182 7 1 328 7 326 4.84e-75 234
Msa0714140 MtrunA17_Chr2g0292181 39.157 332 195 4 1 328 10 338 3.74e-74 233
Msa0714140 MtrunA17_Chr2g0322861 40.694 317 181 5 14 328 74 385 5.63e-74 233
Msa0714140 MtrunA17_Chr2g0320061 38.906 329 188 5 1 328 1 317 1.38e-73 229
Msa0714140 MtrunA17_Chr4g0024121 40.752 319 184 2 11 328 11 325 2.54e-73 229
Msa0714140 MtrunA17_Chr2g0292151 39.339 333 193 6 1 328 1 329 2.71e-73 230
Msa0714140 MtrunA17_Chr2g0320051 39.210 329 187 5 1 328 1 317 2.85e-73 229
Msa0714140 MtrunA17_Chr2g0320091 40.248 323 175 7 12 328 7 317 3.90e-73 228
Msa0714140 MtrunA17_Chr7g0268501 40.979 327 183 7 3 328 2 319 1.26e-72 227
Msa0714140 MtrunA17_Chr7g0268521 40.979 327 183 7 3 328 2 319 1.26e-72 227
Msa0714140 MtrunA17_Chr2g0292251 41.100 309 175 4 23 328 24 328 6.30e-72 226
Msa0714140 MtrunA17_Chr2g0292111 38.438 333 196 6 1 328 1 329 7.48e-72 226
Msa0714140 MtrunA17_Chr4g0063671 40.673 327 177 7 7 326 1 317 8.00e-72 225
Msa0714140 MtrunA17_Chr2g0320071 38.245 319 186 4 11 328 8 316 3.62e-71 223
Msa0714140 MtrunA17_Chr2g0291751 41.100 309 175 5 23 328 25 329 5.86e-71 224
Msa0714140 MtrunA17_Chr4g0070951 39.130 322 187 4 11 328 12 328 9.22e-71 223
Msa0714140 MtrunA17_Chr2g0299691 37.821 312 184 4 22 328 51 357 1.25e-70 223
Msa0714140 MtrunA17_Chr2g0320101 38.438 320 184 4 12 328 7 316 2.08e-70 221
Msa0714140 MtrunA17_Chr7g0258811 39.319 323 184 6 7 325 53 367 2.62e-70 223
Msa0714140 MtrunA17_Chr1g0194151 39.645 338 188 8 1 328 1 332 3.40e-70 221
Msa0714140 MtrunA17_Chr8g0372601 39.297 313 182 4 21 328 20 329 6.18e-70 221
Msa0714140 MtrunA17_Chr7g0244461 37.578 322 187 4 7 328 4 311 8.87e-70 219
Msa0714140 MtrunA17_Chr3g0129051 38.485 330 186 7 1 325 1 318 9.01e-70 220
Msa0714140 MtrunA17_Chr2g0292091 38.438 333 191 8 1 328 1 324 1.96e-69 220
Msa0714140 MtrunA17_Chr4g0076211 39.799 299 168 6 31 328 45 332 3.40e-69 219
Msa0714140 MtrunA17_Chr1g0194271 39.420 345 186 8 1 328 1 339 8.47e-69 218
Msa0714140 MtrunA17_Chr2g0292291 40.120 334 188 8 2 328 3 331 1.15e-68 218
Msa0714140 MtrunA17_Chr2g0292101 37.764 331 197 5 1 328 1 325 2.09e-68 217
Msa0714140 MtrunA17_Chr7g0244451 38.344 326 189 4 4 328 1 315 2.93e-68 216
Msa0714140 MtrunA17_Chr4g0013821 37.255 306 186 4 23 328 24 323 5.15e-68 216
Msa0714140 MtrunA17_Chr7g0254201 39.604 303 173 5 25 327 18 310 7.35e-68 215
Msa0714140 MtrunA17_Chr5g0404721 39.867 301 175 4 30 328 33 329 9.85e-68 215
Msa0714140 MtrunA17_Chr1g0175561 36.923 325 198 5 4 325 2 322 1.36e-67 214
Msa0714140 MtrunA17_Chr1g0164891 40.461 304 168 8 32 328 94 391 2.00e-67 216
Msa0714140 MtrunA17_Chr4g0013201 38.636 308 177 5 22 328 41 337 5.10e-66 211
Msa0714140 MtrunA17_Chr4g0013171 36.335 322 186 6 13 325 6 317 6.53e-66 210
Msa0714140 MtrunA17_Chr4g0013721 38.047 297 178 4 32 328 105 395 8.52e-66 213
Msa0714140 MtrunA17_Chr2g0279041 35.168 327 199 6 5 326 4 322 1.52e-65 209
Msa0714140 MtrunA17_Chr5g0402581 35.948 306 189 5 25 328 25 325 4.45e-65 208
Msa0714140 MtrunA17_Chr6g0467121 39.091 330 180 8 6 328 47 362 4.64e-65 210
Msa0714140 MtrunA17_Chr2g0320031 37.273 330 193 6 1 328 1 318 2.04e-64 206
Msa0714140 MtrunA17_Chr5g0402571 35.276 326 197 7 6 328 11 325 2.05e-64 206
Msa0714140 MtrunA17_Chr6g0477071 37.117 326 185 6 8 328 31 341 3.09e-64 206
Msa0714140 MtrunA17_Chr7g0254231 40.404 297 162 6 32 327 27 309 6.69e-64 204
Msa0714140 MtrunA17_Chr2g0296621 37.954 303 175 7 27 328 50 340 9.00e-64 205
Msa0714140 MtrunA17_Chr5g0432441 37.879 330 186 8 2 325 6 322 9.36e-64 204
Msa0714140 MtrunA17_Chr3g0129061 38.066 331 186 7 1 325 1 318 2.35e-63 203
Msa0714140 MtrunA17_Chr4g0038171 37.695 321 187 5 12 328 9 320 4.35e-63 202
Msa0714140 MtrunA17_Chr3g0136751 36.223 323 191 5 6 326 10 319 7.05e-63 202
Msa0714140 MtrunA17_Chr5g0438021 37.037 324 188 6 5 325 11 321 8.17e-63 202
Msa0714140 MtrunA17_Chr3g0114451 38.614 303 176 3 26 328 25 317 9.65e-63 202
Msa0714140 MtrunA17_Chr3g0106921 37.188 320 184 7 11 325 9 316 2.22e-62 201
Msa0714140 MtrunA17_Chr4g0038161 35.385 325 196 5 8 328 5 319 3.52e-62 200
Msa0714140 MtrunA17_Chr4g0043391 37.304 319 187 5 14 328 14 323 4.03e-62 200
Msa0714140 MtrunA17_Chr6g0467161 35.258 329 196 6 6 328 18 335 6.41e-62 200
Msa0714140 MtrunA17_Chr4g0013181 36.700 297 178 4 30 325 62 349 1.44e-61 200
Msa0714140 MtrunA17_Chr2g0278671 37.179 312 177 7 23 326 20 320 3.11e-61 198
Msa0714140 MtrunA17_Chr3g0129041 38.066 331 186 7 1 325 1 318 7.96e-61 197
Msa0714140 MtrunA17_Chr4g0038151 34.663 326 199 5 7 328 5 320 8.17e-61 197
Msa0714140 MtrunA17_Chr4g0068621 35.599 309 189 7 23 328 34 335 1.15e-59 194
Msa0714140 MtrunA17_Chr4g0013191 38.176 296 169 6 36 328 55 339 1.22e-59 194
Msa0714140 MtrunA17_Chr6g0467251 36.810 326 188 6 7 325 10 324 2.78e-59 194
Msa0714140 MtrunA17_Chr5g0432351 37.082 329 188 8 2 325 3 317 3.70e-59 192
Msa0714140 MtrunA17_Chr6g0460711 37.342 316 188 6 11 325 4 310 9.90e-59 191
Msa0714140 MtrunA17_Chr5g0432341 36.170 329 191 8 2 325 3 317 1.83e-57 188
Msa0714140 MtrunA17_Chr5g0400331 35.737 319 192 5 18 328 17 330 1.97e-57 188
Msa0714140 MtrunA17_Chr1g0213061 37.346 324 183 9 13 328 9 320 5.88e-57 187
Msa0714140 MtrunA17_Chr3g0107881 36.533 323 189 7 11 328 12 323 7.67e-57 187
Msa0714140 MtrunA17_Chr5g0432331 36.170 329 191 8 2 325 34 348 8.22e-57 187
Msa0714140 MtrunA17_Chr2g0329641 32.362 343 202 6 1 325 1 331 8.90e-56 184
Msa0714140 MtrunA17_Chr1g0155611 35.880 301 188 3 27 325 46 343 1.04e-55 184
Msa0714140 MtrunA17_Chr4g0075241 33.028 327 205 7 7 325 3 323 5.40e-55 182
Msa0714140 MtrunA17_Chr7g0224371 33.229 319 201 6 11 328 14 321 1.57e-53 178
Msa0714140 MtrunA17_Chr2g0316791 31.737 334 192 6 25 326 74 403 1.76e-53 180
Msa0714140 MtrunA17_Chr3g0106901 35.312 320 189 4 6 325 18 319 2.54e-53 177
Msa0714140 MtrunA17_Chr2g0316481 32.335 334 190 6 25 326 74 403 4.10e-53 179
Msa0714140 MtrunA17_Chr2g0279061 36.154 260 154 5 71 326 12 263 7.89e-51 169
Msa0714140 MtrunA17_Chr2g0316831 31.437 334 193 7 25 326 110 439 8.14e-51 174
Msa0714140 MtrunA17_Chr2g0316191 30.746 335 195 6 25 326 74 404 9.13e-51 173
Msa0714140 MtrunA17_Chr5g0421411 35.714 280 160 9 60 328 14 284 9.97e-51 170
Msa0714140 MtrunA17_Chr1g0181511 35.179 307 187 5 25 328 25 322 8.65e-50 168
Msa0714140 MtrunA17_Chr4g0074851 33.882 304 189 5 27 327 32 326 1.65e-49 168
Msa0714140 MtrunA17_Chr1g0181481 35.505 307 186 5 25 328 25 322 2.23e-49 167
Msa0714140 MtrunA17_Chr2g0311251 31.953 338 189 8 25 328 9 339 1.27e-48 166
Msa0714140 MtrunA17_Chr1g0181431 35.048 311 182 6 25 328 25 322 1.48e-48 165
Msa0714140 MtrunA17_Chr2g0311241 29.351 385 194 7 17 328 50 429 2.73e-48 167
Msa0714140 MtrunA17_Chr5g0413051 33.010 309 193 7 25 325 71 373 1.74e-47 164
Msa0714140 MtrunA17_Chr2g0292281 40.865 208 111 3 123 328 18 215 7.64e-44 150
Msa0714140 MtrunA17_Chr4g0004591 30.124 322 162 4 27 328 77 355 2.50e-42 150
Msa0714140 MtrunA17_Chr5g0432401 31.173 324 168 8 7 325 9 282 3.23e-40 142
Msa0714140 MtrunA17_Chr2g0316811 33.913 230 131 5 25 237 48 273 2.50e-36 133
Msa0714140 MtrunA17_Chr3g0114461 38.265 196 112 4 131 325 1 188 1.16e-34 125
Msa0714140 MtrunA17_Chr2g0316141 28.571 287 150 7 73 326 11 275 3.28e-27 107
Msa0714140 MtrunA17_Chr2g0316181 28.571 287 150 7 73 326 11 275 3.28e-27 107
Msa0714140 MtrunA17_Chr7g0254181 45.283 106 48 4 102 202 33 133 3.16e-19 83.2
Msa0714140 MtrunA17_Chr1g0181501 32.812 192 118 4 141 328 4 188 3.86e-19 84.0
Msa0714140 MtrunA17_Chr5g0432321 36.496 137 73 3 144 274 4 132 4.71e-19 82.0
Msa0714140 MtrunA17_Chr3g0114491 40.179 112 64 2 26 137 17 125 6.12e-17 76.3
Msa0714140 MtrunA17_Chr3g0137751 32.584 178 92 7 47 212 92 253 5.13e-16 77.4
Msa0714140 MtrunA17_Chr1g0181491 37.391 115 67 3 25 139 10 119 2.11e-15 72.4
Msa0714140 MtrunA17_Chr4g0013811 41.096 73 43 0 141 213 6 78 1.82e-14 67.8
Msa0714140 MtrunA17_Chr3g0104101 30.282 142 90 6 194 328 9 148 6.46e-14 68.6
Msa0714140 MtrunA17_Chr7g0268491 39.583 96 56 2 233 328 3 96 3.67e-13 64.7
Msa0714140 MtrunA17_Chr1g0196191 50.000 70 31 2 69 138 27 92 1.03e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0714140 AT4G37530.1 66.337 303 102 0 23 325 23 325 2.47e-153 433
Msa0714140 AT3G49960.1 62.769 325 121 0 1 325 1 325 4.37e-153 432
Msa0714140 AT5G67400.1 62.154 325 123 0 1 325 1 325 6.52e-152 429
Msa0714140 AT4G37520.1 64.784 301 106 0 25 325 25 325 4.16e-150 425
Msa0714140 AT4G30170.1 63.158 304 108 1 25 328 25 324 5.30e-148 419
Msa0714140 AT4G37520.2 64.452 301 104 1 25 325 25 322 4.20e-147 417
Msa0714140 AT2G18980.1 61.635 318 118 1 11 328 9 322 2.06e-146 416
Msa0714140 AT4G37530.2 68.462 260 82 0 23 282 23 282 3.98e-135 385
Msa0714140 AT5G14130.1 54.688 320 141 3 7 326 12 327 1.98e-117 342
Msa0714140 AT5G14130.2 54.688 320 141 3 7 326 53 368 4.69e-117 343
Msa0714140 AT4G17690.1 45.307 309 160 4 18 325 18 318 3.04e-94 283
Msa0714140 AT5G47000.1 46.026 302 156 3 25 325 31 326 1.36e-89 271
Msa0714140 AT2G34060.1 44.156 308 166 4 24 327 39 344 1.69e-87 266
Msa0714140 AT5G40150.1 46.078 306 157 4 24 328 29 327 3.61e-86 263
Msa0714140 AT3G28200.1 41.883 308 166 4 24 328 18 315 5.90e-82 251
Msa0714140 AT3G21770.1 42.857 308 167 6 23 327 25 326 1.32e-78 243
Msa0714140 AT5G42180.1 42.284 324 174 8 4 325 1 313 1.52e-78 243
Msa0714140 AT5G51890.1 40.909 330 184 8 1 328 1 321 1.68e-78 243
Msa0714140 AT1G05260.1 41.463 328 183 6 4 327 1 323 3.16e-78 242
Msa0714140 AT1G24110.1 41.456 316 181 3 11 325 6 318 4.61e-78 242
Msa0714140 AT5G06730.1 39.077 325 186 4 6 328 19 333 1.27e-74 234
Msa0714140 AT1G71695.1 39.640 333 180 6 6 326 13 336 6.56e-74 232
Msa0714140 AT3G01190.1 39.571 326 187 7 1 325 1 317 2.38e-72 227
Msa0714140 AT3G49120.1 39.748 317 184 4 16 328 21 334 2.66e-71 225
Msa0714140 AT4G11290.1 38.671 331 194 6 1 328 1 325 4.42e-71 224
Msa0714140 AT5G19880.1 38.199 322 191 5 9 325 7 325 5.04e-71 224
Msa0714140 AT3G03670.1 37.736 318 187 5 11 325 8 317 5.22e-71 223
Msa0714140 AT3G32980.1 39.748 317 184 4 16 328 20 333 9.42e-71 224
Msa0714140 AT3G49110.1 40.379 317 182 4 16 328 22 335 9.55e-71 224
Msa0714140 AT2G38380.1 37.695 321 194 4 11 328 15 332 2.75e-69 220
Msa0714140 AT5G06720.1 39.542 306 178 5 23 325 28 329 2.83e-69 219
Msa0714140 AT5G15180.1 36.826 334 199 7 1 328 1 328 3.54e-69 219
Msa0714140 AT2G18140.1 39.597 298 176 3 32 328 40 334 4.28e-69 219
Msa0714140 AT4G08780.1 40.968 310 176 4 23 328 20 326 4.81e-69 219
Msa0714140 AT4G36430.1 38.245 319 193 3 11 328 14 329 5.84e-69 218
Msa0714140 AT4G08770.1 40.645 310 177 4 23 328 20 326 6.72e-69 219
Msa0714140 AT4G31760.1 39.506 324 180 6 11 328 12 325 7.52e-69 218
Msa0714140 AT2G38390.1 37.383 321 195 4 11 328 15 332 1.62e-68 218
Msa0714140 AT5G17820.1 38.978 313 178 5 13 325 10 309 2.95e-68 216
Msa0714140 AT2G18150.1 39.262 298 177 3 32 328 41 335 8.80e-68 216
Msa0714140 AT5G17820.2 38.978 313 178 5 13 325 63 362 1.18e-67 216
Msa0714140 AT2G22420.1 37.736 318 191 5 11 328 8 318 3.10e-67 214
Msa0714140 AT4G33420.1 38.226 327 184 7 6 328 12 324 3.22e-67 214
Msa0714140 AT1G05240.1 39.604 303 174 5 27 326 26 322 5.82e-67 213
Msa0714140 AT1G05250.1 39.604 303 174 5 27 326 26 322 5.82e-67 213
Msa0714140 AT4G33420.2 38.226 327 184 7 6 328 59 371 1.27e-66 214
Msa0714140 AT5G64120.1 38.384 297 174 5 32 328 40 327 3.41e-66 211
Msa0714140 AT5G19890.1 38.272 324 187 6 9 328 12 326 1.40e-65 210
Msa0714140 AT1G14540.1 36.533 323 190 5 7 328 6 314 1.48e-65 209
Msa0714140 AT4G16270.1 39.333 300 172 8 32 328 55 347 2.56e-65 209
Msa0714140 AT5G66390.1 37.538 333 196 5 1 325 1 329 5.31e-64 206
Msa0714140 AT2G41480.1 37.231 325 191 5 9 328 11 327 6.37e-64 205
Msa0714140 AT5G05340.1 38.361 305 174 5 24 325 27 320 8.29e-64 205
Msa0714140 AT2G39040.1 38.782 312 179 7 24 328 43 349 9.01e-64 206
Msa0714140 AT3G50990.1 35.780 327 205 4 1 325 14 337 1.03e-63 205
Msa0714140 AT2G24800.1 37.419 310 178 6 25 328 29 328 4.54e-63 203
Msa0714140 AT5G64110.1 36.280 328 193 7 7 328 12 329 5.32e-63 203
Msa0714140 AT5G58400.1 38.080 323 181 8 8 325 13 321 2.15e-62 201
Msa0714140 AT1G77100.1 37.195 328 187 8 6 326 1 316 4.24e-62 201
Msa0714140 AT5G39580.1 36.923 325 192 9 8 328 3 318 5.32e-62 200
Msa0714140 AT1G34510.1 37.778 315 178 7 13 325 7 305 5.56e-62 200
Msa0714140 AT1G14550.1 36.061 330 199 6 1 328 1 320 5.75e-62 200
Msa0714140 AT1G49570.1 36.275 306 185 6 25 325 46 346 9.00e-62 201
Msa0714140 AT4G33870.1 32.840 338 188 5 24 326 65 398 1.45e-60 199
Msa0714140 AT1G30870.1 38.312 308 176 7 22 326 46 342 2.28e-60 197
Msa0714140 AT4G26010.1 35.514 321 189 7 8 327 4 307 3.77e-60 195
Msa0714140 AT4G26010.2 35.714 322 187 8 8 327 32 335 6.47e-60 195
Msa0714140 AT1G44970.1 36.482 307 190 3 24 328 42 345 3.34e-59 194
Msa0714140 AT2G43480.1 33.762 311 190 6 22 325 30 331 8.17e-58 190
Msa0714140 AT5G58390.1 38.154 325 183 8 6 325 1 312 1.42e-57 189
Msa0714140 AT5G24070.1 34.951 309 185 6 26 327 34 333 3.99e-56 186
Msa0714140 AT5G22410.1 34.259 324 196 9 7 325 10 321 4.87e-56 185
Msa0714140 AT5G64100.1 35.333 300 180 6 32 328 42 330 1.32e-55 184
Msa0714140 AT4G25980.1 34.091 308 189 5 25 326 24 323 8.62e-55 182
Msa0714140 AT2G35380.1 35.599 309 188 6 27 328 30 334 1.44e-52 176
Msa0714140 AT1G68850.1 31.515 330 212 9 8 328 10 334 1.73e-51 174
Msa0714140 AT4G21960.1 32.776 299 189 5 32 327 36 325 2.04e-48 165
Msa0714140 AT2G37130.1 33.657 309 192 6 24 328 27 326 1.64e-47 163
Msa0714140 AT2G37130.2 33.993 303 187 6 30 328 2 295 5.43e-47 160
Msa0714140 AT3G17070.1 32.680 306 191 6 27 325 38 335 1.06e-45 159
Msa0714140 AT2G35380.2 35.897 234 140 5 102 328 16 246 7.46e-38 135
Msa0714140 AT2G24800.2 38.012 171 99 3 25 195 29 192 3.33e-31 118
Msa0714140 AT3G17070.2 30.303 264 168 7 69 325 18 272 1.96e-30 117
Msa0714140 AT5G39580.2 40.719 167 91 5 32 198 30 188 3.66e-28 109
Msa0714140 AT4G25980.2 38.202 178 101 4 25 201 69 238 4.79e-28 110
Msa0714140 AT4G32320.1 28.674 279 152 12 7 267 74 323 9.87e-18 83.2

Find 92 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAGTGGTGTCTACTTAAT+TGG 0.165416 5_1:+6744536 None:intergenic
TCAAAGGCATGTGGAGTAAT+TGG 0.184890 5_1:+6742373 None:intergenic
TGAATTATATATGCTTTAAT+TGG 0.188116 5_1:+6744695 None:intergenic
ATGATGACAAATTATATTAT+TGG 0.216620 5_1:-6742094 Msa0714140:three_prime_UTR
ACAGAAATGATTGCACTTTC+AGG 0.236725 5_1:-6743543 Msa0714140:intron
TCTAAAGATTCTGATGTAAA+TGG 0.264360 5_1:-6743636 Msa0714140:CDS
CCAGCCAATGAAAGATTATC+AGG 0.272485 5_1:+6744233 None:intergenic
TGTTGCTGCCATGACCAAAT+TGG 0.277940 5_1:-6742218 Msa0714140:CDS
CTTCCATGACTGCTTTGTTC+AGG 0.296230 5_1:-6744416 Msa0714140:intron
GACACCAACTCGACCCAATT+TGG 0.314627 5_1:+6742204 None:intergenic
ACCATACTATGAGGTAGAAT+TGG 0.315906 5_1:-6743679 Msa0714140:CDS
ATGAGTCAAAATTTACTATA+TGG 0.317467 5_1:+6744733 None:intergenic
TCCAAGGGTTGCAGTTGATA+TGG 0.330440 5_1:-6742398 Msa0714140:CDS
CTTGAAATTGTACACTCTAT+TGG 0.334476 5_1:+6742498 None:intergenic
CAGCACAAGAAACTTTATTC+TGG 0.336699 5_1:+6744153 None:intergenic
AACAGCATCCACAGCTGCTT+TGG 0.345598 5_1:+6744184 None:intergenic
TGTACTTACGGAATATAATA+AGG 0.380746 5_1:+6742022 None:intergenic
CCCAATTCTACCTCATAGTA+TGG 0.385461 5_1:+6743678 None:intergenic
GTAGAATTGGGAAGATTTGA+TGG 0.400406 5_1:-6743666 Msa0714140:CDS
AGAGAGTTAAGAAGAGTAAC+GGG 0.410176 5_1:+6744584 None:intergenic
ATATGGAATGTGAAATTGTC+GGG 0.420055 5_1:+6744750 None:intergenic
TGAAAAGATTCTAATCCAAC+TGG 0.426325 5_1:-6744781 Msa0714140:five_prime_UTR
TCACCCTGATAATCTTTCAT+TGG 0.428396 5_1:-6744237 Msa0714140:CDS
CCTGATAATCTTTCATTGGC+TGG 0.430855 5_1:-6744233 Msa0714140:CDS
GTAGTGGTGTCTACTTAATT+GGG 0.434010 5_1:+6744537 None:intergenic
GTTGCTGCCATGACCAAATT+GGG 0.437082 5_1:-6742217 Msa0714140:CDS
AAAAGCATTCACTGCAGCTT+TGG 0.441419 5_1:+6742273 None:intergenic
CAAAGGCATGTGGAGTAATT+GGG 0.442444 5_1:+6742374 None:intergenic
ACCCTTGGATCCACATCCCT+TGG 0.454377 5_1:+6742412 None:intergenic
TTGCAGAGGTAAAGTAAAGA+AGG 0.455504 5_1:+6744644 None:intergenic
AATCTTTCATTGGCTGGAGA+TGG 0.460504 5_1:-6744227 Msa0714140:CDS
ATCAATGTGCCCAAGGGATG+TGG 0.460713 5_1:-6742422 Msa0714140:CDS
TTGTGCTGATATTCTAGCTA+TGG 0.463503 5_1:-6744138 Msa0714140:CDS
GTTTAAACAATGTATTAAGC+TGG 0.467335 5_1:+6743583 None:intergenic
CCATACTATGAGGTAGAATT+GGG 0.468056 5_1:-6743678 Msa0714140:CDS
TTGAATCCGTGAAGAGGACT+TGG 0.468682 5_1:+6742299 None:intergenic
TCCATATCAACTGCAACCCT+TGG 0.475393 5_1:+6742397 None:intergenic
CTATTTCAAGAATCTACAAA+AGG 0.475878 5_1:-6742344 Msa0714140:CDS
AGCTGGTTCAAGTTGAATCC+TGG 0.480998 5_1:+6743600 None:intergenic
GCGTAGTGTAAGTCTAATGT+AGG 0.483647 5_1:+6742457 None:intergenic
CTCAGACCAAGTCCTCTTCA+CGG 0.486562 5_1:-6742305 Msa0714140:CDS
ATACATTGTTTAAACATCAC+GGG 0.490569 5_1:-6743575 Msa0714140:CDS
TATTTCAAGAATCTACAAAA+GGG 0.495761 5_1:-6742343 Msa0714140:CDS
AAGAAGAGACGTAGAGTGGC+AGG 0.502656 5_1:+6744436 None:intergenic
CCCTTGGATCCACATCCCTT+GGG 0.505679 5_1:+6742413 None:intergenic
AATACATTGTTTAAACATCA+CGG 0.513218 5_1:-6743576 Msa0714140:CDS
GTGTCAAGAATTCACACAAT+GGG 0.518226 5_1:-6742186 Msa0714140:CDS
AACCCGTGATGTTATTGCAT+TGG 0.520448 5_1:-6744114 Msa0714140:intron
TTCAAGTTGAATCCTGGCTC+AGG 0.520683 5_1:+6743606 None:intergenic
CCAATTACACAGGGTTGTGA+TGG 0.520878 5_1:-6744305 Msa0714140:intron
CAAGAATCTACAAAAGGGGA+AGG 0.521642 5_1:-6742338 Msa0714140:CDS
TCTGTAGGAGCTCACACCGT+TGG 0.528334 5_1:-6742544 Msa0714140:intron
TTACCTGAACAAAGCAGTCA+TGG 0.532969 5_1:+6744413 None:intergenic
AATGGAAAACTTCCTGAGCC+AGG 0.533024 5_1:-6743618 Msa0714140:CDS
AAGAGAGTTAAGAAGAGTAA+CGG 0.533383 5_1:+6744583 None:intergenic
TCCCTCTCTGCTCTATTATG+TGG 0.534283 5_1:+6744260 None:intergenic
GAAACTTTATTCTGGCAAAG+AGG 0.538555 5_1:+6744161 None:intergenic
GGTCATGGCAGCAACAAAGT+TGG 0.538768 5_1:+6742225 None:intergenic
AATTAAAATCAATGTGCCCA+AGG 0.543156 5_1:-6742429 Msa0714140:CDS
TATATGGAATGTGAAATTGT+CGG 0.543572 5_1:+6744749 None:intergenic
TAGAATTGGGAAGATTTGAT+GGG 0.544238 5_1:-6743665 Msa0714140:CDS
AACCAATGCAATAACATCAC+GGG 0.563893 5_1:+6744112 None:intergenic
TTTGTCATCATGTCATCCAC+AGG 0.564567 5_1:+6742106 None:intergenic
CTTGAAATAGACATTATCAA+AGG 0.566475 5_1:+6742357 None:intergenic
GCCCAAGGGATGTGGATCCA+AGG 0.566912 5_1:-6742414 Msa0714140:CDS
CATATCAAGTTAGAATGTTG+TGG 0.566972 5_1:-6742131 Msa0714140:three_prime_UTR
AAGAATCTACAAAAGGGGAA+GGG 0.579158 5_1:-6742337 Msa0714140:CDS
TGGATCTTGAATCCGTGAAG+AGG 0.581662 5_1:+6742293 None:intergenic
ACACAATGGGAACATTCGTA+CGG 0.590337 5_1:-6742173 Msa0714140:CDS
GCCACATAATAGAGCAGAGA+GGG 0.597026 5_1:-6744261 Msa0714140:CDS
CTACTTAATTGGGCATGAGT+AGG 0.598762 5_1:+6744547 None:intergenic
CCCAAGGGATGTGGATCCAA+GGG 0.601578 5_1:-6742413 Msa0714140:CDS
ATTAAAATCAATGTGCCCAA+GGG 0.604041 5_1:-6742428 Msa0714140:CDS
CGTGAAGAGGACTTGGTCTG+AGG 0.605078 5_1:+6742306 None:intergenic
TGTCGGGGTCACGAGCCAGT+TGG 0.605082 5_1:+6744766 None:intergenic
AAACCAATGCAATAACATCA+CGG 0.605408 5_1:+6744111 None:intergenic
TATACAAGCCAAAGCAGCTG+TGG 0.607386 5_1:-6744192 Msa0714140:CDS
AACTCGACCCAATTTGGTCA+TGG 0.625747 5_1:+6742210 None:intergenic
ATGACCAAATTGGGTCGAGT+TGG 0.628391 5_1:-6742208 Msa0714140:CDS
ATTTCAAGAATCTACAAAAG+GGG 0.630722 5_1:-6742342 Msa0714140:CDS
GGCAGGAGGACCATACTATG+AGG 0.631628 5_1:-6743688 Msa0714140:CDS
CGTAGTGTAAGTCTAATGTA+GGG 0.631745 5_1:+6742458 None:intergenic
CAGCCAATGAAAGATTATCA+GGG 0.640554 5_1:+6744234 None:intergenic
ATGGAAGAAGAGACGTAGAG+TGG 0.643216 5_1:+6744432 None:intergenic
TAGGACAAGAATTCTTGTAG+TGG 0.645111 5_1:+6744521 None:intergenic
TAGACATTATCAAAGGCATG+TGG 0.651893 5_1:+6742364 None:intergenic
GGTGTCAAGAATTCACACAA+TGG 0.671153 5_1:-6742187 Msa0714140:CDS
TATGGAATGTGAAATTGTCG+GGG 0.681125 5_1:+6744751 None:intergenic
TTGTCATCATGTCATCCACA+GGG 0.687419 5_1:+6742107 None:intergenic
TTAGAATGTTGTGGTCCCTG+TGG 0.688745 5_1:-6742122 Msa0714140:three_prime_UTR
GTTGCAATGTGAGAATCCAA+CGG 0.699363 5_1:+6742528 None:intergenic
CGCCACATAATAGAGCAGAG+AGG 0.791379 5_1:-6744262 Msa0714140:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATTTTTCTTTAATTAAT+TGG + chr5_1:6743268-6743287 None:intergenic 10.0%
!! AAAAATAATAGATAAAACTT+TGG - chr5_1:6744154-6744173 Msa0714140:CDS 10.0%
!! TGAATTATATATGCTTTAAT+TGG + chr5_1:6742060-6742079 None:intergenic 15.0%
!! GAAAATGTAACATTTATTTA+TGG + chr5_1:6742398-6742417 None:intergenic 15.0%
!! AAGTTTAAAAATTAGATTGA+TGG - chr5_1:6742886-6742905 Msa0714140:intron 15.0%
!! TAGAAAAATAAAGATATTGA+AGG - chr5_1:6744035-6744054 Msa0714140:intron 15.0%
!! AGAAAAATAAAGATATTGAA+GGG - chr5_1:6744036-6744055 Msa0714140:intron 15.0%
!! ATGATGACAAATTATATTAT+TGG - chr5_1:6744658-6744677 Msa0714140:five_prime_UTR 15.0%
!! ATGAGTCAAAATTTACTATA+TGG + chr5_1:6742022-6742041 None:intergenic 20.0%
!!! TCAATTACATGCATTTTATT+TGG - chr5_1:6742368-6742387 Msa0714140:CDS 20.0%
!! TAGGATAATTAAAATAGTCA+CGG + chr5_1:6742790-6742809 None:intergenic 20.0%
!! TCTAATTATTAGAATAGACT+TGG - chr5_1:6742920-6742939 Msa0714140:intron 20.0%
!!! AATGTGAAATTTGAATTTTC+AGG - chr5_1:6743043-6743062 Msa0714140:intron 20.0%
!! AATACATTGTTTAAACATCA+CGG - chr5_1:6743176-6743195 Msa0714140:intron 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG + chr5_1:6743381-6743400 None:intergenic 20.0%
!!! TTGTTTTTCTCACTTTTTAT+TGG + chr5_1:6743394-6743413 None:intergenic 20.0%
!!! AGTCAAAAGTAATTTTAAAC+AGG - chr5_1:6743478-6743497 Msa0714140:intron 20.0%
!! ATTAAAGAACATCAAAGTTA+AGG + chr5_1:6743610-6743629 None:intergenic 20.0%
!! TAACTTTGATGTTCTTTAAT+AGG - chr5_1:6743610-6743629 Msa0714140:CDS 20.0%
!!! TAAAGTTACTTTGTAGTATA+TGG + chr5_1:6743966-6743985 None:intergenic 20.0%
!! AGTAATCATTCTTAAAAAGT+TGG - chr5_1:6744116-6744135 Msa0714140:CDS 20.0%
!! TATTTCAAGAATCTACAAAA+GGG - chr5_1:6744409-6744428 Msa0714140:intron 20.0%
! TATATGGAATGTGAAATTGT+CGG + chr5_1:6742006-6742025 None:intergenic 25.0%
! TATGATATTCCAATTACACA+GGG - chr5_1:6742438-6742457 Msa0714140:CDS 25.0%
!!! CAAAGAAAGTTGATATCTTT+AGG + chr5_1:6742809-6742828 None:intergenic 25.0%
! TTACTCGTTATAATAGTGTT+TGG + chr5_1:6742969-6742988 None:intergenic 25.0%
!! ATTCAGTCTTATAACTAACT+AGG - chr5_1:6743006-6743025 Msa0714140:intron 25.0%
! TCTAAAGATTCTGATGTAAA+TGG - chr5_1:6743116-6743135 Msa0714140:intron 25.0%
! GTTTAAACAATGTATTAAGC+TGG + chr5_1:6743172-6743191 None:intergenic 25.0%
! ATACATTGTTTAAACATCAC+GGG - chr5_1:6743177-6743196 Msa0714140:intron 25.0%
!!! AACCATTTTTTGACAACTTT+TGG - chr5_1:6743296-6743315 Msa0714140:intron 25.0%
! ATCAAAGTTAAGGACAAATT+TGG + chr5_1:6743600-6743619 None:intergenic 25.0%
! ACGACTTGACATTATTTATA+TGG - chr5_1:6743704-6743723 Msa0714140:intron 25.0%
! CTTGAAATAGACATTATCAA+AGG + chr5_1:6744398-6744417 None:intergenic 25.0%
! CTATTTCAAGAATCTACAAA+AGG - chr5_1:6744408-6744427 Msa0714140:intron 25.0%
! ATTTCAAGAATCTACAAAAG+GGG - chr5_1:6744410-6744429 Msa0714140:intron 25.0%
! TGTACTTACGGAATATAATA+AGG + chr5_1:6744733-6744752 None:intergenic 25.0%
TGAAAAGATTCTAATCCAAC+TGG - chr5_1:6741971-6741990 Msa0714140:three_prime_UTR 30.0%
ATATGGAATGTGAAATTGTC+GGG + chr5_1:6742005-6742024 None:intergenic 30.0%
!!! CATTTGATGTTTTTTTGCAG+AGG + chr5_1:6742125-6742144 None:intergenic 30.0%
CTCTGCAAAAAAACATCAAA+TGG - chr5_1:6742123-6742142 Msa0714140:three_prime_UTR 30.0%
AAGAGAGTTAAGAAGAGTAA+CGG + chr5_1:6742172-6742191 None:intergenic 30.0%
! CTGACAATGTTTTCAACATT+AGG + chr5_1:6742253-6742272 None:intergenic 30.0%
CTATGATATTCCAATTACAC+AGG - chr5_1:6742437-6742456 Msa0714140:CDS 30.0%
AAACCAATGCAATAACATCA+CGG + chr5_1:6742644-6742663 None:intergenic 30.0%
AGACTGAATTAACTTTCACA+GGG + chr5_1:6742995-6743014 None:intergenic 30.0%
AAGACTGAATTAACTTTCAC+AGG + chr5_1:6742996-6743015 None:intergenic 30.0%
!! TGAAATTTGAATTTTCAGGC+AGG - chr5_1:6743047-6743066 Msa0714140:intron 30.0%
TAGAATTGGGAAGATTTGAT+GGG - chr5_1:6743087-6743106 Msa0714140:intron 30.0%
GTCCAAAAGTTGTCAAAAAA+TGG + chr5_1:6743301-6743320 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + chr5_1:6743368-6743387 None:intergenic 30.0%
CTTGAAATTGTACACTCTAT+TGG + chr5_1:6744257-6744276 None:intergenic 30.0%
AATTAAAATCAATGTGCCCA+AGG - chr5_1:6744323-6744342 Msa0714140:intron 30.0%
ATTAAAATCAATGTGCCCAA+GGG - chr5_1:6744324-6744343 Msa0714140:intron 30.0%
CATATCAAGTTAGAATGTTG+TGG - chr5_1:6744621-6744640 Msa0714140:exon 30.0%
! CAGTCTTTTAGATGTACTTA+CGG + chr5_1:6744745-6744764 None:intergenic 30.0%
TATGGAATGTGAAATTGTCG+GGG + chr5_1:6742004-6742023 None:intergenic 35.0%
TTGCAGAGGTAAAGTAAAGA+AGG + chr5_1:6742111-6742130 None:intergenic 35.0%
AGAGAGTTAAGAAGAGTAAC+GGG + chr5_1:6742171-6742190 None:intergenic 35.0%
GTAGTGGTGTCTACTTAATT+GGG + chr5_1:6742218-6742237 None:intergenic 35.0%
TGTAGTGGTGTCTACTTAAT+TGG + chr5_1:6742219-6742238 None:intergenic 35.0%
TAGGACAAGAATTCTTGTAG+TGG + chr5_1:6742234-6742253 None:intergenic 35.0%
TCACCCTGATAATCTTTCAT+TGG - chr5_1:6742515-6742534 Msa0714140:CDS 35.0%
CAGCCAATGAAAGATTATCA+GGG + chr5_1:6742521-6742540 None:intergenic 35.0%
GAAACTTTATTCTGGCAAAG+AGG + chr5_1:6742594-6742613 None:intergenic 35.0%
CAGCACAAGAAACTTTATTC+TGG + chr5_1:6742602-6742621 None:intergenic 35.0%
! TTGTGCTGATATTCTAGCTA+TGG - chr5_1:6742614-6742633 Msa0714140:intron 35.0%
AACCAATGCAATAACATCAC+GGG + chr5_1:6742643-6742662 None:intergenic 35.0%
!! AATTTGAATTTTCAGGCAGG+AGG - chr5_1:6743050-6743069 Msa0714140:intron 35.0%
ACCATACTATGAGGTAGAAT+TGG - chr5_1:6743073-6743092 Msa0714140:intron 35.0%
CCATACTATGAGGTAGAATT+GGG - chr5_1:6743074-6743093 Msa0714140:intron 35.0%
GTAGAATTGGGAAGATTTGA+TGG - chr5_1:6743086-6743105 Msa0714140:intron 35.0%
ACAGAAATGATTGCACTTTC+AGG - chr5_1:6743209-6743228 Msa0714140:intron 35.0%
ACCCTCATTATACTGTTTGA+GGG - chr5_1:6743547-6743566 Msa0714140:CDS 35.0%
ACCCTCAAACAGTATAATGA+GGG + chr5_1:6743551-6743570 None:intergenic 35.0%
TACCCTCAAACAGTATAATG+AGG + chr5_1:6743552-6743571 None:intergenic 35.0%
! TTATACTGTTTGAGGGTATG+AGG - chr5_1:6743554-6743573 Msa0714140:CDS 35.0%
! TATACTGTTTGAGGGTATGA+GGG - chr5_1:6743555-6743574 Msa0714140:CDS 35.0%
AAGCATCTGAGTTAGATCTT+GGG - chr5_1:6743989-6744008 Msa0714140:intron 35.0%
!! TTGAAGGGTAGTATTTCTAG+TGG - chr5_1:6744051-6744070 Msa0714140:intron 35.0%
!! GTAGTATTTCTAGTGGTTGT+CGG - chr5_1:6744058-6744077 Msa0714140:intron 35.0%
GAATCATGTCAATCAACACT+AGG + chr5_1:6744182-6744201 None:intergenic 35.0%
CGTAGTGTAAGTCTAATGTA+GGG + chr5_1:6744297-6744316 None:intergenic 35.0%
! TAGACATTATCAAAGGCATG+TGG + chr5_1:6744391-6744410 None:intergenic 35.0%
AAGAATCTACAAAAGGGGAA+GGG - chr5_1:6744415-6744434 Msa0714140:intron 35.0%
GTGTCAAGAATTCACACAAT+GGG - chr5_1:6744566-6744585 Msa0714140:CDS 35.0%
CTACTTAATTGGGCATGAGT+AGG + chr5_1:6742208-6742227 None:intergenic 40.0%
TTACCTGAACAAAGCAGTCA+TGG + chr5_1:6742342-6742361 None:intergenic 40.0%
CCAGCCAATGAAAGATTATC+AGG + chr5_1:6742522-6742541 None:intergenic 40.0%
CCTGATAATCTTTCATTGGC+TGG - chr5_1:6742519-6742538 Msa0714140:CDS 40.0%
! AATCTTTCATTGGCTGGAGA+TGG - chr5_1:6742525-6742544 Msa0714140:CDS 40.0%
AACCCGTGATGTTATTGCAT+TGG - chr5_1:6742638-6742657 Msa0714140:intron 40.0%
! GGATCATCTAGAACAGCATT+AGG - chr5_1:6742941-6742960 Msa0714140:intron 40.0%
CCCAATTCTACCTCATAGTA+TGG + chr5_1:6743077-6743096 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + chr5_1:6743358-6743377 None:intergenic 40.0%
TCAATATGTCTCATGCATGC+TGG + chr5_1:6743506-6743525 None:intergenic 40.0%
TAATGAGGGTCACATAGCAT+AGG + chr5_1:6743537-6743556 None:intergenic 40.0%
GACCCTCATTATACTGTTTG+AGG - chr5_1:6743546-6743565 Msa0714140:CDS 40.0%
CAAGCATCTGAGTTAGATCT+TGG - chr5_1:6743988-6744007 Msa0714140:intron 40.0%
ACATGATTCATTCCCTCTGT+AGG - chr5_1:6744193-6744212 Msa0714140:CDS 40.0%
GTTGCAATGTGAGAATCCAA+CGG + chr5_1:6744227-6744246 None:intergenic 40.0%
GCGTAGTGTAAGTCTAATGT+AGG + chr5_1:6744298-6744317 None:intergenic 40.0%
! CAAAGGCATGTGGAGTAATT+GGG + chr5_1:6744381-6744400 None:intergenic 40.0%
! TCAAAGGCATGTGGAGTAAT+TGG + chr5_1:6744382-6744401 None:intergenic 40.0%
CAAGAATCTACAAAAGGGGA+AGG - chr5_1:6744414-6744433 Msa0714140:intron 40.0%
!! AAAAGCATTCACTGCAGCTT+TGG + chr5_1:6744482-6744501 None:intergenic 40.0%
GGTGTCAAGAATTCACACAA+TGG - chr5_1:6744565-6744584 Msa0714140:CDS 40.0%
ACACAATGGGAACATTCGTA+CGG - chr5_1:6744579-6744598 Msa0714140:CDS 40.0%
TTGTCATCATGTCATCCACA+GGG + chr5_1:6744648-6744667 None:intergenic 40.0%
TTTGTCATCATGTCATCCAC+AGG + chr5_1:6744649-6744668 None:intergenic 40.0%
ATGGAAGAAGAGACGTAGAG+TGG + chr5_1:6742323-6742342 None:intergenic 45.0%
! CTTCCATGACTGCTTTGTTC+AGG - chr5_1:6742336-6742355 Msa0714140:CDS 45.0%
CCATCACAACCCTGTGTAAT+TGG + chr5_1:6742450-6742469 None:intergenic 45.0%
CCAATTACACAGGGTTGTGA+TGG - chr5_1:6742447-6742466 Msa0714140:CDS 45.0%
GCCACATAATAGAGCAGAGA+GGG - chr5_1:6742491-6742510 Msa0714140:CDS 45.0%
TCCCTCTCTGCTCTATTATG+TGG + chr5_1:6742495-6742514 None:intergenic 45.0%
TATACAAGCCAAAGCAGCTG+TGG - chr5_1:6742560-6742579 Msa0714140:intron 45.0%
AATGGAAAACTTCCTGAGCC+AGG - chr5_1:6743134-6743153 Msa0714140:intron 45.0%
!! TTCAAGTTGAATCCTGGCTC+AGG + chr5_1:6743149-6743168 None:intergenic 45.0%
!! AGCTGGTTCAAGTTGAATCC+TGG + chr5_1:6743155-6743174 None:intergenic 45.0%
AGTGTAAACCGTAAACCACG+CGG + chr5_1:6743242-6743261 None:intergenic 45.0%
GGTCACATAGCATAGGAACA+TGG + chr5_1:6743530-6743549 None:intergenic 45.0%
! GTTTGAGGGTATGAGGGTAT+TGG - chr5_1:6743561-6743580 Msa0714140:CDS 45.0%
! TCCAAGGGTTGCAGTTGATA+TGG - chr5_1:6744354-6744373 Msa0714140:intron 45.0%
TCCATATCAACTGCAACCCT+TGG + chr5_1:6744358-6744377 None:intergenic 45.0%
TTGAATCCGTGAAGAGGACT+TGG + chr5_1:6744456-6744475 None:intergenic 45.0%
TGGATCTTGAATCCGTGAAG+AGG + chr5_1:6744462-6744481 None:intergenic 45.0%
TGTTGCTGCCATGACCAAAT+TGG - chr5_1:6744534-6744553 Msa0714140:CDS 45.0%
GTTGCTGCCATGACCAAATT+GGG - chr5_1:6744535-6744554 Msa0714140:CDS 45.0%
AACTCGACCCAATTTGGTCA+TGG + chr5_1:6744545-6744564 None:intergenic 45.0%
ATGACCAAATTGGGTCGAGT+TGG - chr5_1:6744544-6744563 Msa0714140:CDS 45.0%
TTAGAATGTTGTGGTCCCTG+TGG - chr5_1:6744630-6744649 Msa0714140:exon 45.0%
!!! ATTATTTTACATTTATAAAT+TGG + chr5_1:6744092-6744111 None:intergenic 5.0%
AAGAAGAGACGTAGAGTGGC+AGG + chr5_1:6742319-6742338 None:intergenic 50.0%
CGCCACATAATAGAGCAGAG+AGG - chr5_1:6742490-6742509 Msa0714140:CDS 50.0%
AACAGCATCCACAGCTGCTT+TGG + chr5_1:6742571-6742590 None:intergenic 50.0%
ATCAATGTGCCCAAGGGATG+TGG - chr5_1:6744330-6744349 Msa0714140:intron 50.0%
CTCAGACCAAGTCCTCTTCA+CGG - chr5_1:6744447-6744466 Msa0714140:CDS 50.0%
GGTCATGGCAGCAACAAAGT+TGG + chr5_1:6744530-6744549 None:intergenic 50.0%
GACACCAACTCGACCCAATT+TGG + chr5_1:6744551-6744570 None:intergenic 50.0%
GGCAGGAGGACCATACTATG+AGG - chr5_1:6743064-6743083 Msa0714140:intron 55.0%
GTAATGCGCCGCGTGGTTTA+CGG - chr5_1:6743231-6743250 Msa0714140:intron 55.0%
ACGGTGTGAGCTCCTACAGA+GGG + chr5_1:6744208-6744227 None:intergenic 55.0%
AACGGTGTGAGCTCCTACAG+AGG + chr5_1:6744209-6744228 None:intergenic 55.0%
TCTGTAGGAGCTCACACCGT+TGG - chr5_1:6744208-6744227 Msa0714140:CDS 55.0%
CCCTTGGATCCACATCCCTT+GGG + chr5_1:6744342-6744361 None:intergenic 55.0%
CCCAAGGGATGTGGATCCAA+GGG - chr5_1:6744339-6744358 Msa0714140:intron 55.0%
ACCCTTGGATCCACATCCCT+TGG + chr5_1:6744343-6744362 None:intergenic 55.0%
! CGTGAAGAGGACTTGGTCTG+AGG + chr5_1:6744449-6744468 None:intergenic 55.0%
! CTTTCAGGTAATGCGCCGCG+TGG - chr5_1:6743224-6743243 Msa0714140:intron 60.0%
GCCCAAGGGATGTGGATCCA+AGG - chr5_1:6744338-6744357 Msa0714140:intron 60.0%
TGTCGGGGTCACGAGCCAGT+TGG + chr5_1:6741989-6742008 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 6741962 6744812 6741962 ID=Msa0714140;Name=Msa0714140
chr5_1 mRNA 6741962 6744812 6741962 ID=Msa0714140-mRNA-1;Parent=Msa0714140;Name=Msa0714140-mRNA-1;_AED=0.03;_eAED=0.03;_QI=180|1|1|1|1|1|4|194|328
chr5_1 exon 6741962 6742559 6741962 ID=Msa0714140-mRNA-1:exon:2816;Parent=Msa0714140-mRNA-1
chr5_1 exon 6743544 6743709 6743544 ID=Msa0714140-mRNA-1:exon:2815;Parent=Msa0714140-mRNA-1
chr5_1 exon 6744115 6744315 6744115 ID=Msa0714140-mRNA-1:exon:2814;Parent=Msa0714140-mRNA-1
chr5_1 exon 6744417 6744812 6744417 ID=Msa0714140-mRNA-1:exon:2813;Parent=Msa0714140-mRNA-1
chr5_1 five_prime_UTR 6744633 6744812 6744633 ID=Msa0714140-mRNA-1:five_prime_utr;Parent=Msa0714140-mRNA-1
chr5_1 CDS 6744417 6744632 6744417 ID=Msa0714140-mRNA-1:cds;Parent=Msa0714140-mRNA-1
chr5_1 CDS 6744115 6744315 6744115 ID=Msa0714140-mRNA-1:cds;Parent=Msa0714140-mRNA-1
chr5_1 CDS 6743544 6743709 6743544 ID=Msa0714140-mRNA-1:cds;Parent=Msa0714140-mRNA-1
chr5_1 CDS 6742156 6742559 6742156 ID=Msa0714140-mRNA-1:cds;Parent=Msa0714140-mRNA-1
chr5_1 three_prime_UTR 6741962 6742155 6741962 ID=Msa0714140-mRNA-1:three_prime_utr;Parent=Msa0714140-mRNA-1
Gene Sequence

>Msa0714140

ATGGCTCAGCTTAATCTTATACTTGTCCCGTTACTCTTCTTAACTCTCTTTCTTCATTCATGTCCTACTCATGCCCAATTAAGTAGACACCACTACAAGAATTCTTGTCCTAATGTTGAAAACATTGTCAGACAAGCTGTCAAAAAGAAATTTCATCAAACATTTACAACAGTTCCTGCCACTCTACGTCTCTTCTTCCATGACTGCTTTGTTCAGGGTTGTGATGGTTCTATTCTTGTAGCATCAACGCCACATAATAGAGCAGAGAGGGATCACCCTGATAATCTTTCATTGGCTGGAGATGGATTTGATACTGTTATACAAGCCAAAGCAGCTGTGGATGCTGTTCCTCTTTGCCAGAATAAAGTTTCTTGTGCTGATATTCTAGCTATGGCAACCCGTGATGTTATTGCATTGGCAGGAGGACCATACTATGAGGTAGAATTGGGAAGATTTGATGGGCTAAGATCTAAAGATTCTGATGTAAATGGAAAACTTCCTGAGCCAGGATTCAACTTGAACCAGCTTAATACATTGTTTAAACATCACGGGCTTACACAAACAGAAATGATTGCACTTTCAGGAGCTCACACCGTTGGATTCTCACATTGCAACAAATTCACCAATAGAGTGTACAATTTCAAGACAACAAGTCGAGTAGACCCTACATTAGACTTACACTACGCAGCAAAATTAAAATCAATGTGCCCAAGGGATGTGGATCCAAGGGTTGCAGTTGATATGGACCCAATTACTCCACATGCCTTTGATAATGTCTATTTCAAGAATCTACAAAAGGGGAAGGGTTTATTCACCTCAGACCAAGTCCTCTTCACGGATTCAAGATCCAAAGCTGCAGTGAATGCTTTTGCTAGTAGTAACAAAATATTTCGTGCCAACTTTGTTGCTGCCATGACCAAATTGGGTCGAGTTGGTGTCAAGAATTCACACAATGGGAACATTCGTACGGATTGTTCTGTGATTTAA
Protein sequence

>Msa0714140

MAQLNLILVPLLFLTLFLHSCPTHAQLSRHHYKNSCPNVENIVRQAVKKKFHQTFTTVPATLRLFFHDCFVQGCDGSILVASTPHNRAERDHPDNLSLAGDGFDTVIQAKAAVDAVPLCQNKVSCADILAMATRDVIALAGGPYYEVELGRFDGLRSKDSDVNGKLPEPGFNLNQLNTLFKHHGLTQTEMIALSGAHTVGFSHCNKFTNRVYNFKTTSRVDPTLDLHYAAKLKSMCPRDVDPRVAVDMDPITPHAFDNVYFKNLQKGKGLFTSDQVLFTDSRSKAAVNAFASSNKIFRANFVAAMTKLGRVGVKNSHNGNIRTDCSVI*