AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1388210

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1388210 MtrunA17_Chr5g0401431 97.256 328 9 0 1 328 1 328 0.0 659
Msa1388210 MtrunA17_Chr4g0053871 71.037 328 90 1 1 328 1 323 2.08e-177 494
Msa1388210 MtrunA17_Chr4g0072091 67.442 301 95 2 26 326 23 320 4.91e-152 429
Msa1388210 MtrunA17_Chr1g0148021 61.321 318 119 3 12 328 13 327 5.87e-143 407
Msa1388210 MtrunA17_Chr7g0225221 57.492 327 128 5 1 326 1 317 6.33e-129 370
Msa1388210 MtrunA17_Chr8g0364291 44.099 322 176 3 6 325 1 320 1.87e-90 273
Msa1388210 MtrunA17_Chr6g0451571 42.812 320 177 4 11 328 18 333 9.70e-85 259
Msa1388210 MtrunA17_Chr3g0128061 42.947 319 178 3 11 328 10 325 2.03e-84 258
Msa1388210 MtrunA17_Chr1g0197411 41.745 321 178 5 10 325 10 326 1.47e-83 256
Msa1388210 MtrunA17_Chr4g0046131 42.484 306 170 4 26 327 41 344 3.93e-81 250
Msa1388210 MtrunA17_Chr1g0204011 42.679 321 172 8 10 328 11 321 2.87e-80 247
Msa1388210 MtrunA17_Chr2g0292211 41.141 333 187 5 1 328 12 340 1.41e-78 244
Msa1388210 MtrunA17_Chr5g0405991 41.846 325 174 7 7 328 3 315 2.96e-78 241
Msa1388210 MtrunA17_Chr2g0292271 41.456 316 179 4 16 328 17 329 8.19e-78 241
Msa1388210 MtrunA17_Chr2g0292241 41.141 333 187 5 1 328 1 329 2.22e-77 241
Msa1388210 MtrunA17_Chr2g0292261 40.841 333 188 5 1 328 1 329 3.00e-77 240
Msa1388210 MtrunA17_Chr1g0157051 40.303 330 176 7 1 328 7 317 1.67e-76 237
Msa1388210 MtrunA17_Chr8g0371381 42.857 308 163 5 23 328 22 318 1.69e-76 237
Msa1388210 MtrunA17_Chr1g0188431 39.521 334 182 7 1 328 7 326 4.84e-75 234
Msa1388210 MtrunA17_Chr2g0292181 39.157 332 195 4 1 328 10 338 3.74e-74 233
Msa1388210 MtrunA17_Chr2g0322861 40.694 317 181 5 14 328 74 385 5.63e-74 233
Msa1388210 MtrunA17_Chr2g0320061 38.906 329 188 5 1 328 1 317 1.38e-73 229
Msa1388210 MtrunA17_Chr4g0024121 40.752 319 184 2 11 328 11 325 2.54e-73 229
Msa1388210 MtrunA17_Chr2g0292151 39.339 333 193 6 1 328 1 329 2.71e-73 230
Msa1388210 MtrunA17_Chr2g0320051 39.210 329 187 5 1 328 1 317 2.85e-73 229
Msa1388210 MtrunA17_Chr2g0320091 40.248 323 175 7 12 328 7 317 3.90e-73 228
Msa1388210 MtrunA17_Chr7g0268501 40.979 327 183 7 3 328 2 319 1.26e-72 227
Msa1388210 MtrunA17_Chr7g0268521 40.979 327 183 7 3 328 2 319 1.26e-72 227
Msa1388210 MtrunA17_Chr2g0292251 41.100 309 175 4 23 328 24 328 6.30e-72 226
Msa1388210 MtrunA17_Chr2g0292111 38.438 333 196 6 1 328 1 329 7.48e-72 226
Msa1388210 MtrunA17_Chr4g0063671 40.673 327 177 7 7 326 1 317 8.00e-72 225
Msa1388210 MtrunA17_Chr2g0320071 38.245 319 186 4 11 328 8 316 3.62e-71 223
Msa1388210 MtrunA17_Chr2g0291751 41.100 309 175 5 23 328 25 329 5.86e-71 224
Msa1388210 MtrunA17_Chr4g0070951 39.130 322 187 4 11 328 12 328 9.22e-71 223
Msa1388210 MtrunA17_Chr2g0299691 37.821 312 184 4 22 328 51 357 1.25e-70 223
Msa1388210 MtrunA17_Chr2g0320101 38.438 320 184 4 12 328 7 316 2.08e-70 221
Msa1388210 MtrunA17_Chr7g0258811 39.319 323 184 6 7 325 53 367 2.62e-70 223
Msa1388210 MtrunA17_Chr1g0194151 39.645 338 188 8 1 328 1 332 3.40e-70 221
Msa1388210 MtrunA17_Chr8g0372601 39.297 313 182 4 21 328 20 329 6.18e-70 221
Msa1388210 MtrunA17_Chr7g0244461 37.578 322 187 4 7 328 4 311 8.87e-70 219
Msa1388210 MtrunA17_Chr3g0129051 38.485 330 186 7 1 325 1 318 9.01e-70 220
Msa1388210 MtrunA17_Chr2g0292091 38.438 333 191 8 1 328 1 324 1.96e-69 220
Msa1388210 MtrunA17_Chr4g0076211 39.799 299 168 6 31 328 45 332 3.40e-69 219
Msa1388210 MtrunA17_Chr1g0194271 39.420 345 186 8 1 328 1 339 8.47e-69 218
Msa1388210 MtrunA17_Chr2g0292291 40.120 334 188 8 2 328 3 331 1.15e-68 218
Msa1388210 MtrunA17_Chr2g0292101 37.764 331 197 5 1 328 1 325 2.09e-68 217
Msa1388210 MtrunA17_Chr7g0244451 38.344 326 189 4 4 328 1 315 2.93e-68 216
Msa1388210 MtrunA17_Chr4g0013821 37.255 306 186 4 23 328 24 323 5.15e-68 216
Msa1388210 MtrunA17_Chr7g0254201 39.604 303 173 5 25 327 18 310 7.35e-68 215
Msa1388210 MtrunA17_Chr5g0404721 39.867 301 175 4 30 328 33 329 9.85e-68 215
Msa1388210 MtrunA17_Chr1g0175561 36.923 325 198 5 4 325 2 322 1.36e-67 214
Msa1388210 MtrunA17_Chr1g0164891 40.461 304 168 8 32 328 94 391 2.00e-67 216
Msa1388210 MtrunA17_Chr4g0013201 38.636 308 177 5 22 328 41 337 5.10e-66 211
Msa1388210 MtrunA17_Chr4g0013171 36.335 322 186 6 13 325 6 317 6.53e-66 210
Msa1388210 MtrunA17_Chr4g0013721 38.047 297 178 4 32 328 105 395 8.52e-66 213
Msa1388210 MtrunA17_Chr2g0279041 35.168 327 199 6 5 326 4 322 1.52e-65 209
Msa1388210 MtrunA17_Chr5g0402581 35.948 306 189 5 25 328 25 325 4.45e-65 208
Msa1388210 MtrunA17_Chr6g0467121 39.091 330 180 8 6 328 47 362 4.64e-65 210
Msa1388210 MtrunA17_Chr2g0320031 37.273 330 193 6 1 328 1 318 2.04e-64 206
Msa1388210 MtrunA17_Chr5g0402571 35.276 326 197 7 6 328 11 325 2.05e-64 206
Msa1388210 MtrunA17_Chr6g0477071 37.117 326 185 6 8 328 31 341 3.09e-64 206
Msa1388210 MtrunA17_Chr7g0254231 40.404 297 162 6 32 327 27 309 6.69e-64 204
Msa1388210 MtrunA17_Chr2g0296621 37.954 303 175 7 27 328 50 340 9.00e-64 205
Msa1388210 MtrunA17_Chr5g0432441 37.879 330 186 8 2 325 6 322 9.36e-64 204
Msa1388210 MtrunA17_Chr3g0129061 38.066 331 186 7 1 325 1 318 2.35e-63 203
Msa1388210 MtrunA17_Chr4g0038171 37.695 321 187 5 12 328 9 320 4.35e-63 202
Msa1388210 MtrunA17_Chr3g0136751 36.223 323 191 5 6 326 10 319 7.05e-63 202
Msa1388210 MtrunA17_Chr5g0438021 37.037 324 188 6 5 325 11 321 8.17e-63 202
Msa1388210 MtrunA17_Chr3g0114451 38.614 303 176 3 26 328 25 317 9.65e-63 202
Msa1388210 MtrunA17_Chr3g0106921 37.188 320 184 7 11 325 9 316 2.22e-62 201
Msa1388210 MtrunA17_Chr4g0038161 35.385 325 196 5 8 328 5 319 3.52e-62 200
Msa1388210 MtrunA17_Chr4g0043391 37.304 319 187 5 14 328 14 323 4.03e-62 200
Msa1388210 MtrunA17_Chr6g0467161 35.258 329 196 6 6 328 18 335 6.41e-62 200
Msa1388210 MtrunA17_Chr4g0013181 36.700 297 178 4 30 325 62 349 1.44e-61 200
Msa1388210 MtrunA17_Chr2g0278671 37.179 312 177 7 23 326 20 320 3.11e-61 198
Msa1388210 MtrunA17_Chr3g0129041 38.066 331 186 7 1 325 1 318 7.96e-61 197
Msa1388210 MtrunA17_Chr4g0038151 34.663 326 199 5 7 328 5 320 8.17e-61 197
Msa1388210 MtrunA17_Chr4g0068621 35.599 309 189 7 23 328 34 335 1.15e-59 194
Msa1388210 MtrunA17_Chr4g0013191 38.176 296 169 6 36 328 55 339 1.22e-59 194
Msa1388210 MtrunA17_Chr6g0467251 36.810 326 188 6 7 325 10 324 2.78e-59 194
Msa1388210 MtrunA17_Chr5g0432351 37.082 329 188 8 2 325 3 317 3.70e-59 192
Msa1388210 MtrunA17_Chr6g0460711 37.342 316 188 6 11 325 4 310 9.90e-59 191
Msa1388210 MtrunA17_Chr5g0432341 36.170 329 191 8 2 325 3 317 1.83e-57 188
Msa1388210 MtrunA17_Chr5g0400331 35.737 319 192 5 18 328 17 330 1.97e-57 188
Msa1388210 MtrunA17_Chr1g0213061 37.346 324 183 9 13 328 9 320 5.88e-57 187
Msa1388210 MtrunA17_Chr3g0107881 36.533 323 189 7 11 328 12 323 7.67e-57 187
Msa1388210 MtrunA17_Chr5g0432331 36.170 329 191 8 2 325 34 348 8.22e-57 187
Msa1388210 MtrunA17_Chr2g0329641 32.362 343 202 6 1 325 1 331 8.90e-56 184
Msa1388210 MtrunA17_Chr1g0155611 35.880 301 188 3 27 325 46 343 1.04e-55 184
Msa1388210 MtrunA17_Chr4g0075241 33.028 327 205 7 7 325 3 323 5.40e-55 182
Msa1388210 MtrunA17_Chr7g0224371 33.229 319 201 6 11 328 14 321 1.57e-53 178
Msa1388210 MtrunA17_Chr2g0316791 31.737 334 192 6 25 326 74 403 1.76e-53 180
Msa1388210 MtrunA17_Chr3g0106901 35.312 320 189 4 6 325 18 319 2.54e-53 177
Msa1388210 MtrunA17_Chr2g0316481 32.335 334 190 6 25 326 74 403 4.10e-53 179
Msa1388210 MtrunA17_Chr2g0279061 36.154 260 154 5 71 326 12 263 7.89e-51 169
Msa1388210 MtrunA17_Chr2g0316831 31.437 334 193 7 25 326 110 439 8.14e-51 174
Msa1388210 MtrunA17_Chr2g0316191 30.746 335 195 6 25 326 74 404 9.13e-51 173
Msa1388210 MtrunA17_Chr5g0421411 35.714 280 160 9 60 328 14 284 9.97e-51 170
Msa1388210 MtrunA17_Chr1g0181511 35.179 307 187 5 25 328 25 322 8.65e-50 168
Msa1388210 MtrunA17_Chr4g0074851 33.882 304 189 5 27 327 32 326 1.65e-49 168
Msa1388210 MtrunA17_Chr1g0181481 35.505 307 186 5 25 328 25 322 2.23e-49 167
Msa1388210 MtrunA17_Chr2g0311251 31.953 338 189 8 25 328 9 339 1.27e-48 166
Msa1388210 MtrunA17_Chr1g0181431 35.048 311 182 6 25 328 25 322 1.48e-48 165
Msa1388210 MtrunA17_Chr2g0311241 29.351 385 194 7 17 328 50 429 2.73e-48 167
Msa1388210 MtrunA17_Chr5g0413051 33.010 309 193 7 25 325 71 373 1.74e-47 164
Msa1388210 MtrunA17_Chr2g0292281 40.865 208 111 3 123 328 18 215 7.64e-44 150
Msa1388210 MtrunA17_Chr4g0004591 30.124 322 162 4 27 328 77 355 2.50e-42 150
Msa1388210 MtrunA17_Chr5g0432401 31.173 324 168 8 7 325 9 282 3.23e-40 142
Msa1388210 MtrunA17_Chr2g0316811 33.913 230 131 5 25 237 48 273 2.50e-36 133
Msa1388210 MtrunA17_Chr3g0114461 38.265 196 112 4 131 325 1 188 1.16e-34 125
Msa1388210 MtrunA17_Chr2g0316141 28.571 287 150 7 73 326 11 275 3.28e-27 107
Msa1388210 MtrunA17_Chr2g0316181 28.571 287 150 7 73 326 11 275 3.28e-27 107
Msa1388210 MtrunA17_Chr7g0254181 45.283 106 48 4 102 202 33 133 3.16e-19 83.2
Msa1388210 MtrunA17_Chr1g0181501 32.812 192 118 4 141 328 4 188 3.86e-19 84.0
Msa1388210 MtrunA17_Chr5g0432321 36.496 137 73 3 144 274 4 132 4.71e-19 82.0
Msa1388210 MtrunA17_Chr3g0114491 40.179 112 64 2 26 137 17 125 6.12e-17 76.3
Msa1388210 MtrunA17_Chr3g0137751 32.584 178 92 7 47 212 92 253 5.13e-16 77.4
Msa1388210 MtrunA17_Chr1g0181491 37.391 115 67 3 25 139 10 119 2.11e-15 72.4
Msa1388210 MtrunA17_Chr4g0013811 41.096 73 43 0 141 213 6 78 1.82e-14 67.8
Msa1388210 MtrunA17_Chr3g0104101 30.282 142 90 6 194 328 9 148 6.46e-14 68.6
Msa1388210 MtrunA17_Chr7g0268491 39.583 96 56 2 233 328 3 96 3.67e-13 64.7
Msa1388210 MtrunA17_Chr1g0196191 50.000 70 31 2 69 138 27 92 1.03e-11 62.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1388210 AT4G37530.1 66.337 303 102 0 23 325 23 325 2.47e-153 433
Msa1388210 AT3G49960.1 62.769 325 121 0 1 325 1 325 4.37e-153 432
Msa1388210 AT5G67400.1 62.154 325 123 0 1 325 1 325 6.52e-152 429
Msa1388210 AT4G37520.1 64.784 301 106 0 25 325 25 325 4.16e-150 425
Msa1388210 AT4G30170.1 63.158 304 108 1 25 328 25 324 5.30e-148 419
Msa1388210 AT4G37520.2 64.452 301 104 1 25 325 25 322 4.20e-147 417
Msa1388210 AT2G18980.1 61.635 318 118 1 11 328 9 322 2.06e-146 416
Msa1388210 AT4G37530.2 68.462 260 82 0 23 282 23 282 3.98e-135 385
Msa1388210 AT5G14130.1 54.688 320 141 3 7 326 12 327 1.98e-117 342
Msa1388210 AT5G14130.2 54.688 320 141 3 7 326 53 368 4.69e-117 343
Msa1388210 AT4G17690.1 45.307 309 160 4 18 325 18 318 3.04e-94 283
Msa1388210 AT5G47000.1 46.026 302 156 3 25 325 31 326 1.36e-89 271
Msa1388210 AT2G34060.1 44.156 308 166 4 24 327 39 344 1.69e-87 266
Msa1388210 AT5G40150.1 46.078 306 157 4 24 328 29 327 3.61e-86 263
Msa1388210 AT3G28200.1 41.883 308 166 4 24 328 18 315 5.90e-82 251
Msa1388210 AT3G21770.1 42.857 308 167 6 23 327 25 326 1.32e-78 243
Msa1388210 AT5G42180.1 42.284 324 174 8 4 325 1 313 1.52e-78 243
Msa1388210 AT5G51890.1 40.909 330 184 8 1 328 1 321 1.68e-78 243
Msa1388210 AT1G05260.1 41.463 328 183 6 4 327 1 323 3.16e-78 242
Msa1388210 AT1G24110.1 41.456 316 181 3 11 325 6 318 4.61e-78 242
Msa1388210 AT5G06730.1 39.077 325 186 4 6 328 19 333 1.27e-74 234
Msa1388210 AT1G71695.1 39.640 333 180 6 6 326 13 336 6.56e-74 232
Msa1388210 AT3G01190.1 39.571 326 187 7 1 325 1 317 2.38e-72 227
Msa1388210 AT3G49120.1 39.748 317 184 4 16 328 21 334 2.66e-71 225
Msa1388210 AT4G11290.1 38.671 331 194 6 1 328 1 325 4.42e-71 224
Msa1388210 AT5G19880.1 38.199 322 191 5 9 325 7 325 5.04e-71 224
Msa1388210 AT3G03670.1 37.736 318 187 5 11 325 8 317 5.22e-71 223
Msa1388210 AT3G32980.1 39.748 317 184 4 16 328 20 333 9.42e-71 224
Msa1388210 AT3G49110.1 40.379 317 182 4 16 328 22 335 9.55e-71 224
Msa1388210 AT2G38380.1 37.695 321 194 4 11 328 15 332 2.75e-69 220
Msa1388210 AT5G06720.1 39.542 306 178 5 23 325 28 329 2.83e-69 219
Msa1388210 AT5G15180.1 36.826 334 199 7 1 328 1 328 3.54e-69 219
Msa1388210 AT2G18140.1 39.597 298 176 3 32 328 40 334 4.28e-69 219
Msa1388210 AT4G08780.1 40.968 310 176 4 23 328 20 326 4.81e-69 219
Msa1388210 AT4G36430.1 38.245 319 193 3 11 328 14 329 5.84e-69 218
Msa1388210 AT4G08770.1 40.645 310 177 4 23 328 20 326 6.72e-69 219
Msa1388210 AT4G31760.1 39.506 324 180 6 11 328 12 325 7.52e-69 218
Msa1388210 AT2G38390.1 37.383 321 195 4 11 328 15 332 1.62e-68 218
Msa1388210 AT5G17820.1 38.978 313 178 5 13 325 10 309 2.95e-68 216
Msa1388210 AT2G18150.1 39.262 298 177 3 32 328 41 335 8.80e-68 216
Msa1388210 AT5G17820.2 38.978 313 178 5 13 325 63 362 1.18e-67 216
Msa1388210 AT2G22420.1 37.736 318 191 5 11 328 8 318 3.10e-67 214
Msa1388210 AT4G33420.1 38.226 327 184 7 6 328 12 324 3.22e-67 214
Msa1388210 AT1G05240.1 39.604 303 174 5 27 326 26 322 5.82e-67 213
Msa1388210 AT1G05250.1 39.604 303 174 5 27 326 26 322 5.82e-67 213
Msa1388210 AT4G33420.2 38.226 327 184 7 6 328 59 371 1.27e-66 214
Msa1388210 AT5G64120.1 38.384 297 174 5 32 328 40 327 3.41e-66 211
Msa1388210 AT5G19890.1 38.272 324 187 6 9 328 12 326 1.40e-65 210
Msa1388210 AT1G14540.1 36.533 323 190 5 7 328 6 314 1.48e-65 209
Msa1388210 AT4G16270.1 39.333 300 172 8 32 328 55 347 2.56e-65 209
Msa1388210 AT5G66390.1 37.538 333 196 5 1 325 1 329 5.31e-64 206
Msa1388210 AT2G41480.1 37.231 325 191 5 9 328 11 327 6.37e-64 205
Msa1388210 AT5G05340.1 38.361 305 174 5 24 325 27 320 8.29e-64 205
Msa1388210 AT2G39040.1 38.782 312 179 7 24 328 43 349 9.01e-64 206
Msa1388210 AT3G50990.1 35.780 327 205 4 1 325 14 337 1.03e-63 205
Msa1388210 AT2G24800.1 37.419 310 178 6 25 328 29 328 4.54e-63 203
Msa1388210 AT5G64110.1 36.280 328 193 7 7 328 12 329 5.32e-63 203
Msa1388210 AT5G58400.1 38.080 323 181 8 8 325 13 321 2.15e-62 201
Msa1388210 AT1G77100.1 37.195 328 187 8 6 326 1 316 4.24e-62 201
Msa1388210 AT5G39580.1 36.923 325 192 9 8 328 3 318 5.32e-62 200
Msa1388210 AT1G34510.1 37.778 315 178 7 13 325 7 305 5.56e-62 200
Msa1388210 AT1G14550.1 36.061 330 199 6 1 328 1 320 5.75e-62 200
Msa1388210 AT1G49570.1 36.275 306 185 6 25 325 46 346 9.00e-62 201
Msa1388210 AT4G33870.1 32.840 338 188 5 24 326 65 398 1.45e-60 199
Msa1388210 AT1G30870.1 38.312 308 176 7 22 326 46 342 2.28e-60 197
Msa1388210 AT4G26010.1 35.514 321 189 7 8 327 4 307 3.77e-60 195
Msa1388210 AT4G26010.2 35.714 322 187 8 8 327 32 335 6.47e-60 195
Msa1388210 AT1G44970.1 36.482 307 190 3 24 328 42 345 3.34e-59 194
Msa1388210 AT2G43480.1 33.762 311 190 6 22 325 30 331 8.17e-58 190
Msa1388210 AT5G58390.1 38.154 325 183 8 6 325 1 312 1.42e-57 189
Msa1388210 AT5G24070.1 34.951 309 185 6 26 327 34 333 3.99e-56 186
Msa1388210 AT5G22410.1 34.259 324 196 9 7 325 10 321 4.87e-56 185
Msa1388210 AT5G64100.1 35.333 300 180 6 32 328 42 330 1.32e-55 184
Msa1388210 AT4G25980.1 34.091 308 189 5 25 326 24 323 8.62e-55 182
Msa1388210 AT2G35380.1 35.599 309 188 6 27 328 30 334 1.44e-52 176
Msa1388210 AT1G68850.1 31.515 330 212 9 8 328 10 334 1.73e-51 174
Msa1388210 AT4G21960.1 32.776 299 189 5 32 327 36 325 2.04e-48 165
Msa1388210 AT2G37130.1 33.657 309 192 6 24 328 27 326 1.64e-47 163
Msa1388210 AT2G37130.2 33.993 303 187 6 30 328 2 295 5.43e-47 160
Msa1388210 AT3G17070.1 32.680 306 191 6 27 325 38 335 1.06e-45 159
Msa1388210 AT2G35380.2 35.897 234 140 5 102 328 16 246 7.46e-38 135
Msa1388210 AT2G24800.2 38.012 171 99 3 25 195 29 192 3.33e-31 118
Msa1388210 AT3G17070.2 30.303 264 168 7 69 325 18 272 1.96e-30 117
Msa1388210 AT5G39580.2 40.719 167 91 5 32 198 30 188 3.66e-28 109
Msa1388210 AT4G25980.2 38.202 178 101 4 25 201 69 238 4.79e-28 110
Msa1388210 AT4G32320.1 28.674 279 152 12 7 267 74 323 9.87e-18 83.2

Find 92 sgRNAs with CRISPR-Local

Find 152 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAGTGGTGTCTACTTAAT+TGG 0.165416 tig0021037:+41430 None:intergenic
TCAAAGGCATGTGGAGTAAT+TGG 0.184890 tig0021037:+39267 None:intergenic
TGAATTATATATGCTTTAAT+TGG 0.188116 tig0021037:+41589 None:intergenic
ATGATGACAAATTATATTAT+TGG 0.216620 tig0021037:-38988 Msa1388210:three_prime_UTR
ACAGAAATGATTGCACTTTC+AGG 0.236725 tig0021037:-40437 Msa1388210:intron
TCTAAAGATTCTGATGTAAA+TGG 0.264360 tig0021037:-40530 Msa1388210:CDS
CCAGCCAATGAAAGATTATC+AGG 0.272485 tig0021037:+41127 None:intergenic
TGTTGCTGCCATGACCAAAT+TGG 0.277940 tig0021037:-39112 Msa1388210:CDS
CTTCCATGACTGCTTTGTTC+AGG 0.296230 tig0021037:-41310 Msa1388210:intron
GACACCAACTCGACCCAATT+TGG 0.314627 tig0021037:+39098 None:intergenic
ACCATACTATGAGGTAGAAT+TGG 0.315906 tig0021037:-40573 Msa1388210:CDS
ATGAGTCAAAATTTACTATA+TGG 0.317467 tig0021037:+41627 None:intergenic
TCCAAGGGTTGCAGTTGATA+TGG 0.330440 tig0021037:-39292 Msa1388210:CDS
CTTGAAATTGTACACTCTAT+TGG 0.334476 tig0021037:+39392 None:intergenic
CAGCACAAGAAACTTTATTC+TGG 0.336699 tig0021037:+41047 None:intergenic
AACAGCATCCACAGCTGCTT+TGG 0.345598 tig0021037:+41078 None:intergenic
TGTACTTACGGAATATAATA+AGG 0.380746 tig0021037:+38916 None:intergenic
CCCAATTCTACCTCATAGTA+TGG 0.385461 tig0021037:+40572 None:intergenic
GTAGAATTGGGAAGATTTGA+TGG 0.400406 tig0021037:-40560 Msa1388210:CDS
AGAGAGTTAAGAAGAGTAAC+GGG 0.410176 tig0021037:+41478 None:intergenic
ATATGGAATGTGAAATTGTC+GGG 0.420055 tig0021037:+41644 None:intergenic
TGAAAAGATTCTAATCCAAC+TGG 0.426325 tig0021037:-41675 Msa1388210:five_prime_UTR
TCACCCTGATAATCTTTCAT+TGG 0.428396 tig0021037:-41131 Msa1388210:CDS
CCTGATAATCTTTCATTGGC+TGG 0.430855 tig0021037:-41127 Msa1388210:CDS
GTAGTGGTGTCTACTTAATT+GGG 0.434010 tig0021037:+41431 None:intergenic
GTTGCTGCCATGACCAAATT+GGG 0.437082 tig0021037:-39111 Msa1388210:CDS
AAAAGCATTCACTGCAGCTT+TGG 0.441419 tig0021037:+39167 None:intergenic
CAAAGGCATGTGGAGTAATT+GGG 0.442444 tig0021037:+39268 None:intergenic
ACCCTTGGATCCACATCCCT+TGG 0.454377 tig0021037:+39306 None:intergenic
TTGCAGAGGTAAAGTAAAGA+AGG 0.455504 tig0021037:+41538 None:intergenic
AATCTTTCATTGGCTGGAGA+TGG 0.460504 tig0021037:-41121 Msa1388210:CDS
ATCAATGTGCCCAAGGGATG+TGG 0.460713 tig0021037:-39316 Msa1388210:CDS
TTGTGCTGATATTCTAGCTA+TGG 0.463503 tig0021037:-41032 Msa1388210:CDS
GTTTAAACAATGTATTAAGC+TGG 0.467335 tig0021037:+40477 None:intergenic
CCATACTATGAGGTAGAATT+GGG 0.468056 tig0021037:-40572 Msa1388210:CDS
TTGAATCCGTGAAGAGGACT+TGG 0.468682 tig0021037:+39193 None:intergenic
TCCATATCAACTGCAACCCT+TGG 0.475393 tig0021037:+39291 None:intergenic
CTATTTCAAGAATCTACAAA+AGG 0.475878 tig0021037:-39238 Msa1388210:CDS
AGCTGGTTCAAGTTGAATCC+TGG 0.480998 tig0021037:+40494 None:intergenic
GCGTAGTGTAAGTCTAATGT+AGG 0.483647 tig0021037:+39351 None:intergenic
CTCAGACCAAGTCCTCTTCA+CGG 0.486562 tig0021037:-39199 Msa1388210:CDS
ATACATTGTTTAAACATCAC+GGG 0.490569 tig0021037:-40469 Msa1388210:CDS
TATTTCAAGAATCTACAAAA+GGG 0.495761 tig0021037:-39237 Msa1388210:CDS
AAGAAGAGACGTAGAGTGGC+AGG 0.502656 tig0021037:+41330 None:intergenic
CCCTTGGATCCACATCCCTT+GGG 0.505679 tig0021037:+39307 None:intergenic
AATACATTGTTTAAACATCA+CGG 0.513218 tig0021037:-40470 Msa1388210:CDS
GTGTCAAGAATTCACACAAT+GGG 0.518226 tig0021037:-39080 Msa1388210:CDS
AACCCGTGATGTTATTGCAT+TGG 0.520448 tig0021037:-41008 Msa1388210:intron
TTCAAGTTGAATCCTGGCTC+AGG 0.520683 tig0021037:+40500 None:intergenic
CCAATTACACAGGGTTGTGA+TGG 0.520878 tig0021037:-41199 Msa1388210:intron
CAAGAATCTACAAAAGGGGA+AGG 0.521642 tig0021037:-39232 Msa1388210:CDS
TCTGTAGGAGCTCACACCGT+TGG 0.528334 tig0021037:-39438 Msa1388210:intron
TTACCTGAACAAAGCAGTCA+TGG 0.532969 tig0021037:+41307 None:intergenic
AATGGAAAACTTCCTGAGCC+AGG 0.533024 tig0021037:-40512 Msa1388210:CDS
AAGAGAGTTAAGAAGAGTAA+CGG 0.533383 tig0021037:+41477 None:intergenic
TCCCTCTCTGCTCTATTATG+TGG 0.534283 tig0021037:+41154 None:intergenic
GAAACTTTATTCTGGCAAAG+AGG 0.538555 tig0021037:+41055 None:intergenic
GGTCATGGCAGCAACAAAGT+TGG 0.538768 tig0021037:+39119 None:intergenic
AATTAAAATCAATGTGCCCA+AGG 0.543156 tig0021037:-39323 Msa1388210:CDS
TATATGGAATGTGAAATTGT+CGG 0.543572 tig0021037:+41643 None:intergenic
TAGAATTGGGAAGATTTGAT+GGG 0.544238 tig0021037:-40559 Msa1388210:CDS
AACCAATGCAATAACATCAC+GGG 0.563893 tig0021037:+41006 None:intergenic
TTTGTCATCATGTCATCCAC+AGG 0.564567 tig0021037:+39000 None:intergenic
CTTGAAATAGACATTATCAA+AGG 0.566475 tig0021037:+39251 None:intergenic
GCCCAAGGGATGTGGATCCA+AGG 0.566912 tig0021037:-39308 Msa1388210:CDS
CATATCAAGTTAGAATGTTG+TGG 0.566972 tig0021037:-39025 Msa1388210:three_prime_UTR
AAGAATCTACAAAAGGGGAA+GGG 0.579158 tig0021037:-39231 Msa1388210:CDS
TGGATCTTGAATCCGTGAAG+AGG 0.581662 tig0021037:+39187 None:intergenic
ACACAATGGGAACATTCGTA+CGG 0.590337 tig0021037:-39067 Msa1388210:CDS
GCCACATAATAGAGCAGAGA+GGG 0.597026 tig0021037:-41155 Msa1388210:CDS
CTACTTAATTGGGCATGAGT+AGG 0.598762 tig0021037:+41441 None:intergenic
CCCAAGGGATGTGGATCCAA+GGG 0.601578 tig0021037:-39307 Msa1388210:CDS
ATTAAAATCAATGTGCCCAA+GGG 0.604041 tig0021037:-39322 Msa1388210:CDS
CGTGAAGAGGACTTGGTCTG+AGG 0.605078 tig0021037:+39200 None:intergenic
TGTCGGGGTCACGAGCCAGT+TGG 0.605082 tig0021037:+41660 None:intergenic
AAACCAATGCAATAACATCA+CGG 0.605408 tig0021037:+41005 None:intergenic
TATACAAGCCAAAGCAGCTG+TGG 0.607386 tig0021037:-41086 Msa1388210:CDS
AACTCGACCCAATTTGGTCA+TGG 0.625747 tig0021037:+39104 None:intergenic
ATGACCAAATTGGGTCGAGT+TGG 0.628391 tig0021037:-39102 Msa1388210:CDS
ATTTCAAGAATCTACAAAAG+GGG 0.630722 tig0021037:-39236 Msa1388210:CDS
GGCAGGAGGACCATACTATG+AGG 0.631628 tig0021037:-40582 Msa1388210:CDS
CGTAGTGTAAGTCTAATGTA+GGG 0.631745 tig0021037:+39352 None:intergenic
CAGCCAATGAAAGATTATCA+GGG 0.640554 tig0021037:+41128 None:intergenic
ATGGAAGAAGAGACGTAGAG+TGG 0.643216 tig0021037:+41326 None:intergenic
TAGGACAAGAATTCTTGTAG+TGG 0.645111 tig0021037:+41415 None:intergenic
TAGACATTATCAAAGGCATG+TGG 0.651893 tig0021037:+39258 None:intergenic
GGTGTCAAGAATTCACACAA+TGG 0.671153 tig0021037:-39081 Msa1388210:CDS
TATGGAATGTGAAATTGTCG+GGG 0.681125 tig0021037:+41645 None:intergenic
TTGTCATCATGTCATCCACA+GGG 0.687419 tig0021037:+39001 None:intergenic
TTAGAATGTTGTGGTCCCTG+TGG 0.688745 tig0021037:-39016 Msa1388210:three_prime_UTR
GTTGCAATGTGAGAATCCAA+CGG 0.699363 tig0021037:+39422 None:intergenic
CGCCACATAATAGAGCAGAG+AGG 0.791379 tig0021037:-41156 Msa1388210:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! ATCATTTTTCTTTAATTAAT+TGG + tig0021037:40162-40181 None:intergenic 10.0%
!! AAAAATAATAGATAAAACTT+TGG - tig0021037:41048-41067 Msa1388210:CDS 10.0%
!! TGAATTATATATGCTTTAAT+TGG + tig0021037:38954-38973 None:intergenic 15.0%
!! GAAAATGTAACATTTATTTA+TGG + tig0021037:39292-39311 None:intergenic 15.0%
!! AAGTTTAAAAATTAGATTGA+TGG - tig0021037:39780-39799 Msa1388210:intron 15.0%
!! TAGAAAAATAAAGATATTGA+AGG - tig0021037:40929-40948 Msa1388210:intron 15.0%
!! AGAAAAATAAAGATATTGAA+GGG - tig0021037:40930-40949 Msa1388210:intron 15.0%
!! ATGATGACAAATTATATTAT+TGG - tig0021037:41552-41571 Msa1388210:five_prime_UTR 15.0%
!! ATGAGTCAAAATTTACTATA+TGG + tig0021037:38916-38935 None:intergenic 20.0%
!!! TCAATTACATGCATTTTATT+TGG - tig0021037:39262-39281 Msa1388210:CDS 20.0%
!! TAGGATAATTAAAATAGTCA+CGG + tig0021037:39684-39703 None:intergenic 20.0%
!! TCTAATTATTAGAATAGACT+TGG - tig0021037:39814-39833 Msa1388210:intron 20.0%
!!! AATGTGAAATTTGAATTTTC+AGG - tig0021037:39937-39956 Msa1388210:intron 20.0%
!! AATACATTGTTTAAACATCA+CGG - tig0021037:40070-40089 Msa1388210:intron 20.0%
!!! TTTTTATTGGTCAAAAACAA+TGG + tig0021037:40275-40294 None:intergenic 20.0%
!!! TTGTTTTTCTCACTTTTTAT+TGG + tig0021037:40288-40307 None:intergenic 20.0%
!!! AGTCAAAAGTAATTTTAAAC+AGG - tig0021037:40372-40391 Msa1388210:intron 20.0%
!! ATTAAAGAACATCAAAGTTA+AGG + tig0021037:40504-40523 None:intergenic 20.0%
!! TAACTTTGATGTTCTTTAAT+AGG - tig0021037:40504-40523 Msa1388210:CDS 20.0%
!!! TAAAGTTACTTTGTAGTATA+TGG + tig0021037:40860-40879 None:intergenic 20.0%
!! AGTAATCATTCTTAAAAAGT+TGG - tig0021037:41010-41029 Msa1388210:CDS 20.0%
!! TATTTCAAGAATCTACAAAA+GGG - tig0021037:41303-41322 Msa1388210:intron 20.0%
! TATATGGAATGTGAAATTGT+CGG + tig0021037:38900-38919 None:intergenic 25.0%
! TATGATATTCCAATTACACA+GGG - tig0021037:39332-39351 Msa1388210:CDS 25.0%
!!! CAAAGAAAGTTGATATCTTT+AGG + tig0021037:39703-39722 None:intergenic 25.0%
! TTACTCGTTATAATAGTGTT+TGG + tig0021037:39863-39882 None:intergenic 25.0%
!! ATTGAGTCTTATAACTAACT+AGG - tig0021037:39900-39919 Msa1388210:intron 25.0%
! TCTAAAGATTCTGATGTAAA+TGG - tig0021037:40010-40029 Msa1388210:intron 25.0%
! GTTTAAACAATGTATTAAGC+TGG + tig0021037:40066-40085 None:intergenic 25.0%
! ATACATTGTTTAAACATCAC+GGG - tig0021037:40071-40090 Msa1388210:intron 25.0%
!!! AACCATTTTTTGACAACTTT+TGG - tig0021037:40190-40209 Msa1388210:intron 25.0%
! ATCAAAGTTAAGGACAAATT+TGG + tig0021037:40494-40513 None:intergenic 25.0%
! ACGACTTGACATTATTTATA+TGG - tig0021037:40598-40617 Msa1388210:intron 25.0%
! CTTGAAATAGACATTATCAA+AGG + tig0021037:41292-41311 None:intergenic 25.0%
! CTATTTCAAGAATCTACAAA+AGG - tig0021037:41302-41321 Msa1388210:intron 25.0%
! ATTTCAAGAATCTACAAAAG+GGG - tig0021037:41304-41323 Msa1388210:intron 25.0%
! TGTACTTACGGAATATAATA+AGG + tig0021037:41627-41646 None:intergenic 25.0%
TGAAAAGATTCTAATCCAAC+TGG - tig0021037:38865-38884 Msa1388210:three_prime_UTR 30.0%
ATATGGAATGTGAAATTGTC+GGG + tig0021037:38899-38918 None:intergenic 30.0%
!!! CATTTGATGTTTTTTTGCAG+AGG + tig0021037:39019-39038 None:intergenic 30.0%
CTCTGCAAAAAAACATCAAA+TGG - tig0021037:39017-39036 Msa1388210:three_prime_UTR 30.0%
AAGAGAGTTAAGAAGAGTAA+CGG + tig0021037:39066-39085 None:intergenic 30.0%
! CTGACAATGTTTTCAACATT+AGG + tig0021037:39147-39166 None:intergenic 30.0%
CTATGATATTCCAATTACAC+AGG - tig0021037:39331-39350 Msa1388210:CDS 30.0%
AAACCAATGCAATAACATCA+CGG + tig0021037:39538-39557 None:intergenic 30.0%
AGACTCAATTAACTTTCACA+GGG + tig0021037:39889-39908 None:intergenic 30.0%
AAGACTCAATTAACTTTCAC+AGG + tig0021037:39890-39909 None:intergenic 30.0%
!! TGAAATTTGAATTTTCAGGC+AGG - tig0021037:39941-39960 Msa1388210:intron 30.0%
TAGAATTGGGAAGATTTGAT+GGG - tig0021037:39981-40000 Msa1388210:intron 30.0%
GTCCAAAAGTTGTCAAAAAA+TGG + tig0021037:40195-40214 None:intergenic 30.0%
AAAACAATGGAGAGAGAAAA+AGG + tig0021037:40262-40281 None:intergenic 30.0%
CTTGAAATTGTACACTCTAT+TGG + tig0021037:41151-41170 None:intergenic 30.0%
AATTAAAATCAATGTGCCCA+AGG - tig0021037:41217-41236 Msa1388210:intron 30.0%
ATTAAAATCAATGTGCCCAA+GGG - tig0021037:41218-41237 Msa1388210:intron 30.0%
CATATCAAGTTAGAATGTTG+TGG - tig0021037:41515-41534 Msa1388210:exon 30.0%
! CAGTCTTTTAGATGTACTTA+CGG + tig0021037:41639-41658 None:intergenic 30.0%
TATGGAATGTGAAATTGTCG+GGG + tig0021037:38898-38917 None:intergenic 35.0%
TTGCAGAGGTAAAGTAAAGA+AGG + tig0021037:39005-39024 None:intergenic 35.0%
AGAGAGTTAAGAAGAGTAAC+GGG + tig0021037:39065-39084 None:intergenic 35.0%
GTAGTGGTGTCTACTTAATT+GGG + tig0021037:39112-39131 None:intergenic 35.0%
TGTAGTGGTGTCTACTTAAT+TGG + tig0021037:39113-39132 None:intergenic 35.0%
TAGGACAAGAATTCTTGTAG+TGG + tig0021037:39128-39147 None:intergenic 35.0%
TCACCCTGATAATCTTTCAT+TGG - tig0021037:39409-39428 Msa1388210:CDS 35.0%
CAGCCAATGAAAGATTATCA+GGG + tig0021037:39415-39434 None:intergenic 35.0%
GAAACTTTATTCTGGCAAAG+AGG + tig0021037:39488-39507 None:intergenic 35.0%
CAGCACAAGAAACTTTATTC+TGG + tig0021037:39496-39515 None:intergenic 35.0%
! TTGTGCTGATATTCTAGCTA+TGG - tig0021037:39508-39527 Msa1388210:intron 35.0%
AACCAATGCAATAACATCAC+GGG + tig0021037:39537-39556 None:intergenic 35.0%
!! AATTTGAATTTTCAGGCAGG+AGG - tig0021037:39944-39963 Msa1388210:intron 35.0%
ACCATACTATGAGGTAGAAT+TGG - tig0021037:39967-39986 Msa1388210:intron 35.0%
CCATACTATGAGGTAGAATT+GGG - tig0021037:39968-39987 Msa1388210:intron 35.0%
GTAGAATTGGGAAGATTTGA+TGG - tig0021037:39980-39999 Msa1388210:intron 35.0%
ACAGAAATGATTGCACTTTC+AGG - tig0021037:40103-40122 Msa1388210:intron 35.0%
ACCCTCATTATACTGTTTGA+GGG - tig0021037:40441-40460 Msa1388210:CDS 35.0%
ACCCTCAAACAGTATAATGA+GGG + tig0021037:40445-40464 None:intergenic 35.0%
TACCCTCAAACAGTATAATG+AGG + tig0021037:40446-40465 None:intergenic 35.0%
! TTATACTGTTTGAGGGTATG+AGG - tig0021037:40448-40467 Msa1388210:CDS 35.0%
! TATACTGTTTGAGGGTATGA+GGG - tig0021037:40449-40468 Msa1388210:CDS 35.0%
AAGCATCTGAGTTAGATCTT+GGG - tig0021037:40883-40902 Msa1388210:intron 35.0%
!! TTGAAGGGTAGTATTTCTAG+TGG - tig0021037:40945-40964 Msa1388210:intron 35.0%
!! GTAGTATTTCTAGTGGTTGT+CGG - tig0021037:40952-40971 Msa1388210:intron 35.0%
GAATCATGTCAATCAACACT+AGG + tig0021037:41076-41095 None:intergenic 35.0%
CGTAGTGTAAGTCTAATGTA+GGG + tig0021037:41191-41210 None:intergenic 35.0%
! TAGACATTATCAAAGGCATG+TGG + tig0021037:41285-41304 None:intergenic 35.0%
AAGAATCTACAAAAGGGGAA+GGG - tig0021037:41309-41328 Msa1388210:intron 35.0%
GTGTCAAGAATTCACACAAT+GGG - tig0021037:41460-41479 Msa1388210:CDS 35.0%
CTACTTAATTGGGCATGAGT+AGG + tig0021037:39102-39121 None:intergenic 40.0%
TTACCTGAACAAAGCAGTCA+TGG + tig0021037:39236-39255 None:intergenic 40.0%
CCAGCCAATGAAAGATTATC+AGG + tig0021037:39416-39435 None:intergenic 40.0%
CCTGATAATCTTTCATTGGC+TGG - tig0021037:39413-39432 Msa1388210:CDS 40.0%
! AATCTTTCATTGGCTGGAGA+TGG - tig0021037:39419-39438 Msa1388210:CDS 40.0%
AACCCGTGATGTTATTGCAT+TGG - tig0021037:39532-39551 Msa1388210:intron 40.0%
! GGATCATCTAGAACAGCATT+AGG - tig0021037:39835-39854 Msa1388210:intron 40.0%
CCCAATTCTACCTCATAGTA+TGG + tig0021037:39971-39990 None:intergenic 40.0%
AGAGAGAAAAAGGAAGAGAG+AGG + tig0021037:40252-40271 None:intergenic 40.0%
TCAATATGTCTCATGCATGC+TGG + tig0021037:40400-40419 None:intergenic 40.0%
TAATGAGGGTCACATAGCAT+AGG + tig0021037:40431-40450 None:intergenic 40.0%
GACCCTCATTATACTGTTTG+AGG - tig0021037:40440-40459 Msa1388210:CDS 40.0%
CAAGCATCTGAGTTAGATCT+TGG - tig0021037:40882-40901 Msa1388210:intron 40.0%
ACATGATTCATTCCCTCTGT+AGG - tig0021037:41087-41106 Msa1388210:CDS 40.0%
GTTGCAATGTGAGAATCCAA+CGG + tig0021037:41121-41140 None:intergenic 40.0%
GCGTAGTGTAAGTCTAATGT+AGG + tig0021037:41192-41211 None:intergenic 40.0%
! CAAAGGCATGTGGAGTAATT+GGG + tig0021037:41275-41294 None:intergenic 40.0%
! TCAAAGGCATGTGGAGTAAT+TGG + tig0021037:41276-41295 None:intergenic 40.0%
CAAGAATCTACAAAAGGGGA+AGG - tig0021037:41308-41327 Msa1388210:intron 40.0%
!! AAAAGCATTCACTGCAGCTT+TGG + tig0021037:41376-41395 None:intergenic 40.0%
GGTGTCAAGAATTCACACAA+TGG - tig0021037:41459-41478 Msa1388210:CDS 40.0%
ACACAATGGGAACATTCGTA+CGG - tig0021037:41473-41492 Msa1388210:CDS 40.0%
TTGTCATCATGTCATCCACA+GGG + tig0021037:41542-41561 None:intergenic 40.0%
TTTGTCATCATGTCATCCAC+AGG + tig0021037:41543-41562 None:intergenic 40.0%
ATGGAAGAAGAGACGTAGAG+TGG + tig0021037:39217-39236 None:intergenic 45.0%
! CTTCCATGACTGCTTTGTTC+AGG - tig0021037:39230-39249 Msa1388210:CDS 45.0%
CCATCACAACCCTGTGTAAT+TGG + tig0021037:39344-39363 None:intergenic 45.0%
CCAATTACACAGGGTTGTGA+TGG - tig0021037:39341-39360 Msa1388210:CDS 45.0%
GCCACATAATAGAGCAGAGA+GGG - tig0021037:39385-39404 Msa1388210:CDS 45.0%
TCCCTCTCTGCTCTATTATG+TGG + tig0021037:39389-39408 None:intergenic 45.0%
TATACAAGCCAAAGCAGCTG+TGG - tig0021037:39454-39473 Msa1388210:intron 45.0%
AATGGAAAACTTCCTGAGCC+AGG - tig0021037:40028-40047 Msa1388210:intron 45.0%
!! TTCAAGTTGAATCCTGGCTC+AGG + tig0021037:40043-40062 None:intergenic 45.0%
!! AGCTGGTTCAAGTTGAATCC+TGG + tig0021037:40049-40068 None:intergenic 45.0%
AGTGTAAACCGTAAACCACG+CGG + tig0021037:40136-40155 None:intergenic 45.0%
GGTCACATAGCATAGGAACA+TGG + tig0021037:40424-40443 None:intergenic 45.0%
! GTTTGAGGGTATGAGGGTAT+TGG - tig0021037:40455-40474 Msa1388210:CDS 45.0%
! TCCAAGGGTTGCAGTTGATA+TGG - tig0021037:41248-41267 Msa1388210:intron 45.0%
TCCATATCAACTGCAACCCT+TGG + tig0021037:41252-41271 None:intergenic 45.0%
TTGAATCCGTGAAGAGGACT+TGG + tig0021037:41350-41369 None:intergenic 45.0%
TGGATCTTGAATCCGTGAAG+AGG + tig0021037:41356-41375 None:intergenic 45.0%
TGTTGCTGCCATGACCAAAT+TGG - tig0021037:41428-41447 Msa1388210:CDS 45.0%
GTTGCTGCCATGACCAAATT+GGG - tig0021037:41429-41448 Msa1388210:CDS 45.0%
AACTCGACCCAATTTGGTCA+TGG + tig0021037:41439-41458 None:intergenic 45.0%
ATGACCAAATTGGGTCGAGT+TGG - tig0021037:41438-41457 Msa1388210:CDS 45.0%
TTAGAATGTTGTGGTCCCTG+TGG - tig0021037:41524-41543 Msa1388210:exon 45.0%
!!! ATTATTTTACATTTATAAAT+TGG + tig0021037:40986-41005 None:intergenic 5.0%
AAGAAGAGACGTAGAGTGGC+AGG + tig0021037:39213-39232 None:intergenic 50.0%
CGCCACATAATAGAGCAGAG+AGG - tig0021037:39384-39403 Msa1388210:CDS 50.0%
AACAGCATCCACAGCTGCTT+TGG + tig0021037:39465-39484 None:intergenic 50.0%
ATCAATGTGCCCAAGGGATG+TGG - tig0021037:41224-41243 Msa1388210:intron 50.0%
CTCAGACCAAGTCCTCTTCA+CGG - tig0021037:41341-41360 Msa1388210:CDS 50.0%
GGTCATGGCAGCAACAAAGT+TGG + tig0021037:41424-41443 None:intergenic 50.0%
GACACCAACTCGACCCAATT+TGG + tig0021037:41445-41464 None:intergenic 50.0%
GGCAGGAGGACCATACTATG+AGG - tig0021037:39958-39977 Msa1388210:intron 55.0%
GTAATGCGCCGCGTGGTTTA+CGG - tig0021037:40125-40144 Msa1388210:intron 55.0%
ACGGTGTGAGCTCCTACAGA+GGG + tig0021037:41102-41121 None:intergenic 55.0%
AACGGTGTGAGCTCCTACAG+AGG + tig0021037:41103-41122 None:intergenic 55.0%
TCTGTAGGAGCTCACACCGT+TGG - tig0021037:41102-41121 Msa1388210:CDS 55.0%
CCCTTGGATCCACATCCCTT+GGG + tig0021037:41236-41255 None:intergenic 55.0%
CCCAAGGGATGTGGATCCAA+GGG - tig0021037:41233-41252 Msa1388210:intron 55.0%
ACCCTTGGATCCACATCCCT+TGG + tig0021037:41237-41256 None:intergenic 55.0%
! CGTGAAGAGGACTTGGTCTG+AGG + tig0021037:41343-41362 None:intergenic 55.0%
! CTTTCAGGTAATGCGCCGCG+TGG - tig0021037:40118-40137 Msa1388210:intron 60.0%
GCCCAAGGGATGTGGATCCA+AGG - tig0021037:41232-41251 Msa1388210:intron 60.0%
TGTCGGGGTCACGAGCCAGT+TGG + tig0021037:38883-38902 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0021037 gene 38856 41706 38856 ID=Msa1388210;Name=Msa1388210
tig0021037 mRNA 38856 41706 38856 ID=Msa1388210-mRNA-1;Parent=Msa1388210;Name=Msa1388210-mRNA-1;_AED=0.03;_eAED=0.03;_QI=180|1|1|1|1|1|4|194|328
tig0021037 exon 38856 39453 38856 ID=Msa1388210-mRNA-1:exon:11045;Parent=Msa1388210-mRNA-1
tig0021037 exon 40438 40603 40438 ID=Msa1388210-mRNA-1:exon:11044;Parent=Msa1388210-mRNA-1
tig0021037 exon 41009 41209 41009 ID=Msa1388210-mRNA-1:exon:11043;Parent=Msa1388210-mRNA-1
tig0021037 exon 41311 41706 41311 ID=Msa1388210-mRNA-1:exon:11042;Parent=Msa1388210-mRNA-1
tig0021037 five_prime_UTR 41527 41706 41527 ID=Msa1388210-mRNA-1:five_prime_utr;Parent=Msa1388210-mRNA-1
tig0021037 CDS 41311 41526 41311 ID=Msa1388210-mRNA-1:cds;Parent=Msa1388210-mRNA-1
tig0021037 CDS 41009 41209 41009 ID=Msa1388210-mRNA-1:cds;Parent=Msa1388210-mRNA-1
tig0021037 CDS 40438 40603 40438 ID=Msa1388210-mRNA-1:cds;Parent=Msa1388210-mRNA-1
tig0021037 CDS 39050 39453 39050 ID=Msa1388210-mRNA-1:cds;Parent=Msa1388210-mRNA-1
tig0021037 three_prime_UTR 38856 39049 38856 ID=Msa1388210-mRNA-1:three_prime_utr;Parent=Msa1388210-mRNA-1
Gene Sequence

>Msa1388210

ATGGCTCAGCTTAATCTTATACTTGTCCCGTTACTCTTCTTAACTCTCTTTCTTCATTCATGTCCTACTCATGCCCAATTAAGTAGACACCACTACAAGAATTCTTGTCCTAATGTTGAAAACATTGTCAGACAAGCTGTCAAAAAGAAATTTCATCAAACATTTACAACAGTTCCTGCCACTCTACGTCTCTTCTTCCATGACTGCTTTGTTCAGGGTTGTGATGGTTCTATTCTTGTAGCATCAACGCCACATAATAGAGCAGAGAGGGATCACCCTGATAATCTTTCATTGGCTGGAGATGGATTTGATACTGTTATACAAGCCAAAGCAGCTGTGGATGCTGTTCCTCTTTGCCAGAATAAAGTTTCTTGTGCTGATATTCTAGCTATGGCAACCCGTGATGTTATTGCATTGGCAGGAGGACCATACTATGAGGTAGAATTGGGAAGATTTGATGGGCTAAGATCTAAAGATTCTGATGTAAATGGAAAACTTCCTGAGCCAGGATTCAACTTGAACCAGCTTAATACATTGTTTAAACATCACGGGCTTACACAAACAGAAATGATTGCACTTTCAGGAGCTCACACCGTTGGATTCTCACATTGCAACAAATTCACCAATAGAGTGTACAATTTCAAGACAACAAGTCGAGTAGACCCTACATTAGACTTACACTACGCAGCAAAATTAAAATCAATGTGCCCAAGGGATGTGGATCCAAGGGTTGCAGTTGATATGGACCCAATTACTCCACATGCCTTTGATAATGTCTATTTCAAGAATCTACAAAAGGGGAAGGGTTTATTCACCTCAGACCAAGTCCTCTTCACGGATTCAAGATCCAAAGCTGCAGTGAATGCTTTTGCTAGTAGTAACAAAATATTTCGTGCCAACTTTGTTGCTGCCATGACCAAATTGGGTCGAGTTGGTGTCAAGAATTCACACAATGGGAACATTCGTACGGATTGTTCTGTGATTTAA
Protein sequence

>Msa1388210

MAQLNLILVPLLFLTLFLHSCPTHAQLSRHHYKNSCPNVENIVRQAVKKKFHQTFTTVPATLRLFFHDCFVQGCDGSILVASTPHNRAERDHPDNLSLAGDGFDTVIQAKAAVDAVPLCQNKVSCADILAMATRDVIALAGGPYYEVELGRFDGLRSKDSDVNGKLPEPGFNLNQLNTLFKHHGLTQTEMIALSGAHTVGFSHCNKFTNRVYNFKTTSRVDPTLDLHYAAKLKSMCPRDVDPRVAVDMDPITPHAFDNVYFKNLQKGKGLFTSDQVLFTDSRSKAAVNAFASSNKIFRANFVAAMTKLGRVGVKNSHNGNIRTDCSVI*