AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1216110


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1216110 MtrunA17_Chr4g0065651 83.865 533 52 9 1 520 1 512 3.21e-145 427
Msa1216110 MtrunA17_Chr0c22g0493881 80.000 385 54 7 1 381 1 366 4.62e-92 285
Msa1216110 MtrunA17_Chr4g0065621 84.365 307 32 5 1 307 1 291 3.91e-86 270
Msa1216110 MtrunA17_Chr2g0287751 66.031 262 58 11 1 256 1 237 6.36e-57 197
Msa1216110 MtrunA17_Chr2g0287741 49.628 538 175 25 10 520 15 483 2.50e-47 172
Msa1216110 MtrunA17_Chr4g0065611 83.459 133 13 2 395 520 12 142 3.17e-39 139
Msa1216110 MtrunA17_Chr0c22g0493871 84.091 132 12 2 396 520 1 130 3.95e-39 139
Msa1216110 MtrunA17_Chr1g0208301 70.513 78 20 1 1 75 1 78 5.96e-30 120
Msa1216110 MtrunA17_Chr4g0067291 50.000 114 41 3 7 120 71 168 1.56e-24 105
Msa1216110 MtrunA17_Chr7g0269081 67.143 70 23 0 5 74 17 86 2.17e-24 103
Msa1216110 MtrunA17_Chr3g0111541 53.521 71 33 0 3 73 5 75 3.63e-19 86.3
Msa1216110 MtrunA17_Chr1g0192131 56.410 78 31 2 4 80 9 84 4.45e-19 89.4
Msa1216110 MtrunA17_Chr7g0272571 56.061 66 29 0 9 74 32 97 1.28e-18 87.4
Msa1216110 MtrunA17_Chr2g0296001 60.294 68 27 0 7 74 70 137 4.25e-17 82.8
Msa1216110 MtrunA17_Chr1g0198341 39.189 74 45 0 10 83 4 77 1.91e-13 65.9
Msa1216110 MtrunA17_Chr8g0382721 52.459 61 29 0 14 74 33 93 8.51e-13 66.2
Msa1216110 MtrunA17_Chr1g0160201 45.902 61 33 0 14 74 29 89 1.95e-12 65.1
Msa1216110 MtrunA17_Chr2g0285561 32.283 127 77 3 8 125 6 132 1.99e-12 68.2
Msa1216110 MtrunA17_Chr3g0124411 47.761 67 35 0 8 74 28 94 2.75e-12 64.7
Msa1216110 MtrunA17_Chr2g0325601 42.254 71 41 0 14 84 6 76 4.65e-12 63.9
Msa1216110 MtrunA17_Chr1g0189221 38.356 73 45 0 7 79 50 122 4.78e-12 64.7
Msa1216110 MtrunA17_Chr7g0251491 33.654 104 62 3 2 98 40 143 7.24e-12 63.9
Msa1216110 MtrunA17_Chr4g0028461 48.276 87 43 2 12 96 68 154 1.07e-11 66.2
Msa1216110 MtrunA17_Chr7g0218981 37.037 81 51 0 13 93 7 87 1.62e-11 61.6
Msa1216110 MtrunA17_Chr5g0407821 37.179 78 49 0 3 80 16 93 2.02e-11 62.0
Msa1216110 MtrunA17_Chr5g0404641 41.176 68 40 0 9 76 2 69 5.70e-11 61.2
Msa1216110 MtrunA17_Chr4g0050571 45.455 66 35 1 10 75 101 165 9.34e-11 60.8
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1216110 AT3G06130.2 51.748 286 98 7 1 277 1 255 4.14e-47 167
Msa1216110 AT3G06130.1 51.748 286 98 7 1 277 1 255 1.42e-45 166
Msa1216110 AT5G19090.2 77.228 101 23 0 1 101 1 101 1.28e-43 161
Msa1216110 AT5G19090.3 77.228 101 23 0 1 101 1 101 1.28e-43 161
Msa1216110 AT5G19090.5 70.000 120 27 1 1 111 1 120 7.68e-43 161
Msa1216110 AT5G19090.4 70.000 120 27 1 1 111 1 120 7.68e-43 161
Msa1216110 AT5G19090.1 70.000 120 27 1 1 111 1 120 7.68e-43 161
Msa1216110 AT3G05220.1 63.514 74 27 0 1 74 1 74 1.96e-26 113
Msa1216110 AT5G27690.1 52.475 101 43 1 5 105 25 120 2.84e-26 110
Msa1216110 AT1G23000.1 61.628 86 29 2 1 83 1 85 7.75e-26 109
Msa1216110 AT1G23000.2 61.628 86 29 2 1 83 61 145 2.32e-25 108
Msa1216110 AT5G37860.1 54.412 68 31 0 9 76 9 76 2.40e-19 88.2
Msa1216110 AT1G56210.1 54.667 75 33 1 10 83 40 114 1.17e-18 88.2
Msa1216110 AT1G06330.1 46.875 64 34 0 14 77 6 69 2.98e-13 67.8
Msa1216110 AT1G66240.1 40.000 65 39 0 10 74 33 97 4.96e-12 63.2
Msa1216110 AT4G10465.1 36.957 92 58 0 1 92 42 133 5.63e-12 65.1
Msa1216110 AT3G56891.1 43.750 64 36 0 14 77 20 83 1.52e-11 63.5
Msa1216110 AT3G02960.1 41.892 74 42 1 3 75 119 192 2.84e-11 64.3
Msa1216110 AT3G56240.3 41.791 67 39 0 10 76 3 69 4.80e-11 60.8
Msa1216110 AT3G56240.1 41.791 67 39 0 10 76 3 69 4.80e-11 60.8
Msa1216110 AT4G23882.1 43.678 87 38 3 9 84 77 163 4.82e-11 64.3
Msa1216110 AT1G71050.1 39.394 66 40 0 9 74 27 92 7.08e-11 61.2

Find 201 sgRNAs with CRISPR-Local

Find 251 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAAGGAAAGGTCACGGTTTC+AGG 0.104424 8_1:-77715007 Msa1216110:CDS
CAAGATCTAGCTCAATTTAA+AGG 0.182916 8_1:-77714653 Msa1216110:CDS
TACTATGTTAATTATGTTCT+TGG 0.218147 8_1:-77713374 Msa1216110:three_prime_UTR
TGTTTGGTGTCTTTATTTAT+TGG 0.221368 8_1:+77715732 None:intergenic
TAGGATTCTGATTCGGGTTC+TGG 0.245506 8_1:+77714600 None:intergenic
GCAGCAGCAGCAACAGTTAA+TGG 0.247779 8_1:-77713790 Msa1216110:CDS
GGATTCCCCTGCATCATTTC+CGG 0.253390 8_1:+77713825 None:intergenic
TGCTGCTGCTGTTGTTGATA+TGG 0.266573 8_1:+77713804 None:intergenic
AAGAGGCAAGTTTGAGAGTT+AGG 0.278652 8_1:+77715639 None:intergenic
TATTGTTTCCACCACCCTTC+TGG 0.290425 8_1:+77714789 None:intergenic
CATCTTTAGGATTCTGATTC+GGG 0.295568 8_1:+77714594 None:intergenic
ATCAAGAAGCTTGCAAAATC+AGG 0.297726 8_1:-77714962 Msa1216110:CDS
TTAACACCTTTAGCATCTTT+AGG 0.299936 8_1:+77714581 None:intergenic
CCCTGCATCATTTCCGGTCC+TGG 0.305122 8_1:+77713831 None:intergenic
AGCTTCTTGATGAGAACATT+TGG 0.309355 8_1:+77714974 None:intergenic
TCAATCTCATCCTGGTAGTA+TGG 0.312405 8_1:-77713976 Msa1216110:CDS
GTTACTTACTTTATTCCTAT+TGG 0.313104 8_1:-77715448 Msa1216110:five_prime_UTR
TTGTATTTGTTGACCACCTT+TGG 0.313268 8_1:+77714760 None:intergenic
CCATTCCCCATAGGCATAGA+AGG 0.318053 8_1:+77714419 None:intergenic
CTTCTTTACTCATGACCAAT+AGG 0.330043 8_1:+77715433 None:intergenic
TAAGGATCTGGAGGAGGATA+AGG 0.339463 8_1:+77713651 None:intergenic
GCATCTTTAGGATTCTGATT+CGG 0.340947 8_1:+77714593 None:intergenic
TTCTGGCCCGGGTGCTGATT+CGG 0.342924 8_1:+77714617 None:intergenic
TCTGATTCGGGTTCTGGCCC+GGG 0.343572 8_1:+77714606 None:intergenic
ACTGATTAACAACGTTGTTC+TGG 0.344905 8_1:+77714885 None:intergenic
GGTGATTATAGATCTGAAAA+TGG 0.348415 8_1:+77715507 None:intergenic
GGCGGAGGTGGAGGCGGTGG+TGG 0.350490 8_1:-77714056 Msa1216110:CDS
TTCTGATTCGGGTTCTGGCC+CGG 0.355308 8_1:+77714605 None:intergenic
GAAATCAATGTTATTGAGAA+TGG 0.356396 8_1:-77713270 Msa1216110:three_prime_UTR
GGGTGGTGGAGGAAATAATA+TGG 0.357181 8_1:-77713955 Msa1216110:CDS
TTACCACCCATTCGGTTCAT+AGG 0.360924 8_1:+77713918 None:intergenic
TTCTATAAACTACTCCTCTA+TGG 0.368659 8_1:+77713413 None:intergenic
CTAAAATCATCCTCATCTTC+AGG 0.371343 8_1:+77714548 None:intergenic
GGTGGCGGAGGTGGAGGCGG+TGG 0.373427 8_1:-77714059 Msa1216110:CDS
TGAAATGAAATGAGAATAGA+AGG 0.374304 8_1:+77715575 None:intergenic
AAGGAAAAGAGAGAAATAAA+TGG 0.382972 8_1:+77715594 None:intergenic
TACTTTCAAGGTGGTGGTGG+TGG 0.384334 8_1:-77713855 Msa1216110:CDS
TAGTAGTCACTGAGAGAGAA+TGG 0.385371 8_1:+77715683 None:intergenic
AAGAAAGGTGGTGGTGGTGG+TGG 0.386759 8_1:-77714230 Msa1216110:CDS
GAGAAATGAGCAACCAGAGC+TGG 0.388714 8_1:+77713233 None:intergenic
CCAAGAGTTTGCTCTATGTT+TGG 0.388834 8_1:+77715716 None:intergenic
CCACCATAGCAGCACGTTGT+TGG 0.393632 8_1:+77713751 None:intergenic
AATGGTGGTGGTGGCGGAAA+TGG 0.397465 8_1:-77714332 Msa1216110:CDS
AACAAGAATGGAGGGAATAA+TGG 0.397922 8_1:-77714131 Msa1216110:CDS
AGAGTTAGGAAGAGAGAGAA+TGG 0.398540 8_1:+77715653 None:intergenic
CATCAAACAAACAATGTTCA+TGG 0.400654 8_1:-77713577 Msa1216110:three_prime_UTR
ACTTGTGATAAATAAAGATC+TGG 0.404190 8_1:+77715469 None:intergenic
CCAATTGGTGGCGGAGGTGG+AGG 0.411942 8_1:-77714065 Msa1216110:CDS
AGAAACCCCTTAAGATGAAA+AGG 0.415613 8_1:+77713441 None:intergenic
CAGAAACCTGGTGGTGGTGG+TGG 0.418442 8_1:-77714308 Msa1216110:CDS
CAGGGAAACATGCTGAGTTA+TGG 0.418710 8_1:-77714943 Msa1216110:CDS
AATGTTCAGGCTATGAATAA+TGG 0.423799 8_1:-77714032 Msa1216110:CDS
GCTTCTTGATGAGAACATTT+GGG 0.423822 8_1:+77714975 None:intergenic
CACGGCATGAATGGTGGAAA+TGG 0.424726 8_1:-77714263 Msa1216110:CDS
TGTATTTGTTGACCACCTTT+GGG 0.427960 8_1:+77714761 None:intergenic
AAAATCTTACAGAAAATTGA+TGG 0.430085 8_1:-77715205 Msa1216110:intron
ATGATGGGTGGTGGAGGTGG+TGG 0.432564 8_1:-77713999 Msa1216110:CDS
AAAATGATGGGTGGTGGAGG+TGG 0.436665 8_1:-77714002 Msa1216110:CDS
GGTAACATTCCTGCTGTTCA+AGG 0.436866 8_1:-77713900 Msa1216110:CDS
AGGCGGTGGTGGTAATGTTC+AGG 0.438058 8_1:-77714045 Msa1216110:CDS
GGTTACTTTCAAGGTGGTGG+TGG 0.439749 8_1:-77713858 Msa1216110:CDS
CCTCCACCTCCGCCACCAAT+TGG 0.440018 8_1:+77714065 None:intergenic
TTCATGCCGTGAATTTGAAC+CGG 0.440785 8_1:+77714275 None:intergenic
GGAAAGAAAGGTGGTGGTGG+TGG 0.445640 8_1:-77714233 Msa1216110:CDS
ACTATGTTAATTATGTTCTT+GGG 0.449339 8_1:-77713373 Msa1216110:three_prime_UTR
ATTGGTGGCGGAGGTGGAGG+CGG 0.453929 8_1:-77714062 Msa1216110:CDS
ATACCAATTGGTGGCGGAGG+TGG 0.457299 8_1:-77714068 Msa1216110:CDS
CCTTCTATGCCTATGGGGAA+TGG 0.458052 8_1:-77714419 Msa1216110:CDS
TGATGAGTTTGATGATGAAA+TGG 0.461887 8_1:-77714471 Msa1216110:CDS
AACAACTTCAACAGATGAAA+GGG 0.462139 8_1:-77714679 Msa1216110:CDS
CGGTTCATAGGCATACTCAT+TGG 0.463995 8_1:+77713930 None:intergenic
ACAGCTTATGAGTGCTATGA+AGG 0.465021 8_1:-77714366 Msa1216110:CDS
TTAGGAAGAGAGAGAATGGT+GGG 0.466008 8_1:+77715657 None:intergenic
AAGGATCTGGAGGAGGATAA+GGG 0.466318 8_1:+77713652 None:intergenic
GGTCTACCGGCAGGCGGAGG+AGG 0.468185 8_1:-77713879 Msa1216110:CDS
AAAGCATGTGAGTAAGGATC+TGG 0.469198 8_1:+77713639 None:intergenic
TGGTGGTGGTGGTCCAGGAC+CGG 0.469917 8_1:-77713844 Msa1216110:CDS
AAGAGTCTCTGAAACATAAG+AGG 0.472199 8_1:+77715622 None:intergenic
AAATCAATGTTATTGAGAAT+GGG 0.477281 8_1:-77713269 Msa1216110:three_prime_UTR
GAAACCCCTTAAGATGAAAA+GGG 0.479165 8_1:+77713442 None:intergenic
TCCAGGACCGGAAATGATGC+AGG 0.480211 8_1:-77713832 Msa1216110:CDS
GGCGGAGGAGGTTACTTTCA+AGG 0.482444 8_1:-77713867 Msa1216110:CDS
ATTGACAATGGCAAAGGTGG+TGG 0.482824 8_1:-77714848 Msa1216110:CDS
AGTAGTCACTGAGAGAGAAT+GGG 0.484635 8_1:+77715684 None:intergenic
CCAAACATAGAGCAAACTCT+TGG 0.488925 8_1:-77715716 Msa1216110:five_prime_UTR
CAATCTCATCCTGGTAGTAT+GGG 0.490190 8_1:-77713975 Msa1216110:CDS
TGGTGGTGGAGGACCTGTGC+CGG 0.493420 8_1:-77714294 Msa1216110:CDS
TCGCTGAAAGCATGTGAGTA+AGG 0.494235 8_1:+77713633 None:intergenic
AAGGGTATGTCGATACCAAT+TGG 0.495826 8_1:-77714080 Msa1216110:CDS
ATGAAAGAAATTCCCAGCTC+TGG 0.499167 8_1:-77713246 Msa1216110:three_prime_UTR
TCCTGCTGTTCAAGGTCTAC+CGG 0.501026 8_1:-77713892 Msa1216110:CDS
GCCGGTAGACCTTGAACAGC+AGG 0.503563 8_1:+77713891 None:intergenic
GGTGGCCTTGCATACATCAT+TGG 0.504586 8_1:+77713705 None:intergenic
TCTGGAGGAGGATAAGGGTA+AGG 0.506412 8_1:+77713657 None:intergenic
CATCCTGGTAGTATGGGTGG+TGG 0.513520 8_1:-77713969 Msa1216110:CDS
GTTCAAATTCACGGCATGAA+TGG 0.514493 8_1:-77714272 Msa1216110:CDS
AAGGAAAGGTCACGGTTTCA+GGG 0.515226 8_1:-77715006 Msa1216110:CDS
AATGGTGGTGGAAACAAGAA+TGG 0.515647 8_1:-77714143 Msa1216110:CDS
CCGTGAATTTGAACCGGCAC+AGG 0.516132 8_1:+77714281 None:intergenic
GGAGGTTACTTTCAAGGTGG+TGG 0.516276 8_1:-77713861 Msa1216110:CDS
GGTGGTGGAGGAAATAATAT+GGG 0.517548 8_1:-77713954 Msa1216110:CDS
AAGTAACCTCCTCCGCCTGC+CGG 0.520732 8_1:+77713873 None:intergenic
GTAGTAATCAAAATAACGAT+GGG 0.520911 8_1:-77714109 Msa1216110:CDS
CAGAATCCTAAAGATGCTAA+AGG 0.521196 8_1:-77714587 Msa1216110:CDS
GATGCCGCCGAATCAGCACC+CGG 0.521854 8_1:-77714624 Msa1216110:CDS
AATCAAAACCAGAAGGGTGG+TGG 0.522342 8_1:-77714797 Msa1216110:CDS
GGAGGAAAGAAAGGTGGTGG+TGG 0.522847 8_1:-77714236 Msa1216110:CDS
CCAACAACGTGCTGCTATGG+TGG 0.525200 8_1:-77713751 Msa1216110:CDS
CAGGAATGTTACCACCCATT+CGG 0.525275 8_1:+77713910 None:intergenic
CAACAACTTCAACAGATGAA+AGG 0.526664 8_1:-77714680 Msa1216110:CDS
GTTAGGAAGAGAGAGAATGG+TGG 0.526762 8_1:+77715656 None:intergenic
CAAGGTCTACCGGCAGGCGG+AGG 0.530336 8_1:-77713882 Msa1216110:CDS
ATGTAATTCACCTCAGGAGG+TGG 0.534211 8_1:+77713687 None:intergenic
AATGGCAATGGAGGAAAGAA+AGG 0.535264 8_1:-77714245 Msa1216110:CDS
CCTGGTAGTATGGGTGGTGG+AGG 0.540462 8_1:-77713966 Msa1216110:CDS
TCATTGGCTGCTGAAATCTC+TGG 0.541514 8_1:+77713721 None:intergenic
GCTGTTCAAGGTCTACCGGC+AGG 0.542942 8_1:-77713888 Msa1216110:CDS
GGACAGAAACCTGGTGGTGG+TGG 0.543498 8_1:-77714311 Msa1216110:CDS
CCTGTGCCGGTTCAAATTCA+CGG 0.544320 8_1:-77714281 Msa1216110:CDS
GAATCACATGACATTGCAGC+TGG 0.546046 8_1:+77713599 None:intergenic
GGAGGAGGATAAGGGTAAGG+AGG 0.547967 8_1:+77713660 None:intergenic
CTTGTGATAAATAAAGATCT+GGG 0.548351 8_1:+77715470 None:intergenic
CCTCCACCACCCATACTACC+AGG 0.550212 8_1:+77713966 None:intergenic
TCAAGAAGCTTGCAAAATCA+GGG 0.551852 8_1:-77714961 Msa1216110:CDS
GGCGGAAATGGACAGAAACC+TGG 0.552019 8_1:-77714320 Msa1216110:CDS
TCGATACCAATTGGTGGCGG+AGG 0.554646 8_1:-77714071 Msa1216110:CDS
GAACCAACAACGTGCTGCTA+TGG 0.559788 8_1:-77713754 Msa1216110:CDS
GGTGGTGGTCAATCTCATCC+TGG 0.561328 8_1:-77713984 Msa1216110:CDS
AGAAATGAGCAACCAGAGCT+GGG 0.565461 8_1:+77713234 None:intergenic
CAAATTCACGGCATGAATGG+TGG 0.565701 8_1:-77714269 Msa1216110:CDS
GGAGGGAATAATCAGAATCA+AGG 0.567228 8_1:-77714209 Msa1216110:CDS
TATATTGCATAAAATTAGAG+AGG 0.567583 8_1:+77713524 None:intergenic
TGAAGTTGTTGCTGCTGCTG+AGG 0.567794 8_1:+77714719 None:intergenic
GGATACATGTAATTCACCTC+AGG 0.568572 8_1:+77713681 None:intergenic
GGTGGTGGAAACAAGAATGG+AGG 0.570437 8_1:-77714140 Msa1216110:CDS
CATTCCCCATAGGCATAGAA+GGG 0.572536 8_1:+77714420 None:intergenic
TTTGTTGACCACCTTTGGGT+TGG 0.576873 8_1:+77714765 None:intergenic
ATGAATGGTGGAAATGGCAA+TGG 0.579729 8_1:-77714257 Msa1216110:CDS
GAGTTTGATGATGAAATGGT+TGG 0.582338 8_1:-77714467 Msa1216110:CDS
GGTAGTAATCAAAATAACGA+TGG 0.583746 8_1:-77714110 Msa1216110:CDS
AGCAGCCAATGATGTATGCA+AGG 0.586173 8_1:-77713710 Msa1216110:CDS
ACAAACAATGTTCATGGTGA+TGG 0.588045 8_1:-77713571 Msa1216110:three_prime_UTR
GGGGTTTCTAATTACCATAG+AGG 0.591890 8_1:-77713427 Msa1216110:three_prime_UTR
AAATCAGAATCAAAACCAGA+AGG 0.592384 8_1:-77714804 Msa1216110:CDS
GGTGCTCACATGATGTTGAA+TGG 0.593764 8_1:-77714398 Msa1216110:CDS
GTGGTGGAAACAAGAATGGA+GGG 0.595867 8_1:-77714139 Msa1216110:CDS
GGTCCTCCACCACCACCACC+AGG 0.597489 8_1:+77714302 None:intergenic
CAACAAATACAACAACTACA+AGG 0.597690 8_1:-77714749 Msa1216110:CDS
ATTTGATGTGCCTGAAGATG+AGG 0.599659 8_1:-77714558 Msa1216110:CDS
GGCAATGGAGGAAAGAAAGG+TGG 0.603629 8_1:-77714242 Msa1216110:CDS
AATCAGAATCAAAACCAGAA+GGG 0.603694 8_1:-77714803 Msa1216110:CDS
TGTGAGTAAGGATCTGGAGG+AGG 0.603879 8_1:+77713645 None:intergenic
AACAATAACCAACCCAAAGG+TGG 0.605261 8_1:-77714773 Msa1216110:CDS
AATAATCAGAATCAAGGTGG+AGG 0.605707 8_1:-77714203 Msa1216110:CDS
CAATTGAAGTCACATGGCCA+CGG 0.606226 8_1:-77715819 None:intergenic
AATGGAGGAAAGAAAGGTGG+TGG 0.606743 8_1:-77714239 Msa1216110:CDS
GATAGATGCAGAACAAGGAA+AGG 0.608149 8_1:-77715020 Msa1216110:CDS
CAAATTGACAATGGCAAAGG+TGG 0.610618 8_1:-77714851 Msa1216110:CDS
TTCATAGCACTCATAAGCTG+TGG 0.610940 8_1:+77714368 None:intergenic
ATGCAAATTGACAATGGCAA+AGG 0.611165 8_1:-77714854 Msa1216110:CDS
TCTCATCCTGGTAGTATGGG+TGG 0.611507 8_1:-77713972 Msa1216110:CDS
AATGAAGTCACTCACTTCTG+TGG 0.611607 8_1:-77715769 Msa1216110:five_prime_UTR
AAAGTGAACATACACTGTGA+TGG 0.617847 8_1:-77715247 Msa1216110:CDS
CCAGGACCGGAAATGATGCA+GGG 0.618163 8_1:-77713831 Msa1216110:CDS
ATGTGAGCACCATTCCCCAT+AGG 0.619841 8_1:+77714410 None:intergenic
AAACCCCTTAAGATGAAAAG+GGG 0.621521 8_1:+77713443 None:intergenic
AGTATGCCTATGAACCGAAT+GGG 0.622246 8_1:-77713924 Msa1216110:CDS
GGTCACGGTTTCAGGGAATG+TGG 0.626243 8_1:-77714999 Msa1216110:CDS
TGGCCCGGGTGCTGATTCGG+CGG 0.627521 8_1:+77714620 None:intergenic
AAGAACATGCAAATTGACAA+TGG 0.628311 8_1:-77714860 Msa1216110:CDS
ATGTCGATACCAATTGGTGG+CGG 0.631785 8_1:-77714074 Msa1216110:CDS
GTTCAAGGTCTACCGGCAGG+CGG 0.633909 8_1:-77713885 Msa1216110:CDS
GCATGTGAGTAAGGATCTGG+AGG 0.633919 8_1:+77713642 None:intergenic
GTAGTCACTGAGAGAGAATG+GGG 0.633943 8_1:+77715685 None:intergenic
GGTATGTCGATACCAATTGG+TGG 0.637679 8_1:-77714077 Msa1216110:CDS
CTTATGAGTGCTATGAAGGG+TGG 0.638762 8_1:-77714362 Msa1216110:CDS
TACATGTAATTCACCTCAGG+AGG 0.640426 8_1:+77713684 None:intergenic
TGCAGAACAAGGAAAGGTCA+CGG 0.641237 8_1:-77715014 Msa1216110:CDS
CAGCTTATGAGTGCTATGAA+GGG 0.642847 8_1:-77714365 Msa1216110:CDS
ATGCCGCCGAATCAGCACCC+GGG 0.644621 8_1:-77714623 Msa1216110:CDS
ACTGAGATAGATGCAGAACA+AGG 0.647644 8_1:-77715025 Msa1216110:CDS
ATATTGCATAAAATTAGAGA+GGG 0.648642 8_1:+77713525 None:intergenic
TAGTAATCAAAATAACGATG+GGG 0.650397 8_1:-77714108 Msa1216110:CDS
ATGCCTATGAACCGAATGGG+TGG 0.650716 8_1:-77713921 Msa1216110:CDS
GAGTATGCCTATGAACCGAA+TGG 0.653536 8_1:-77713925 Msa1216110:CDS
AATGGACAGAAACCTGGTGG+TGG 0.653878 8_1:-77714314 Msa1216110:CDS
AGTAATCAAAATAACGATGG+GGG 0.662461 8_1:-77714107 Msa1216110:CDS
CAGAATCAAAACCAGAAGGG+TGG 0.662734 8_1:-77714800 Msa1216110:CDS
TGCATAAAATTAGAGAGGGT+AGG 0.663015 8_1:+77713529 None:intergenic
AATGGTGGAAATGGCAATGG+AGG 0.665518 8_1:-77714254 Msa1216110:CDS
CAGGACCGGAAATGATGCAG+GGG 0.670762 8_1:-77713830 Msa1216110:CDS
ATTCCCCATAGGCATAGAAG+GGG 0.672578 8_1:+77714421 None:intergenic
AAAGGTGGTGGAAACAACAA+AGG 0.677851 8_1:-77714836 Msa1216110:CDS
GGGAATAATCAGAATCAAGG+TGG 0.678494 8_1:-77714206 Msa1216110:CDS
GGAAACAATAACCAACCCAA+AGG 0.682874 8_1:-77714776 Msa1216110:CDS
GTATGCAAGGCCACCTCCTG+AGG 0.686248 8_1:-77713697 Msa1216110:CDS
AACCCCTTAAGATGAAAAGG+GGG 0.692080 8_1:+77713444 None:intergenic
TTCCCCATAGGCATAGAAGG+GGG 0.698362 8_1:+77714422 None:intergenic
GTGGTGGAGGAAATAATATG+GGG 0.726893 8_1:-77713953 Msa1216110:CDS
GGAAATGGACAGAAACCTGG+TGG 0.762212 8_1:-77714317 Msa1216110:CDS
GGAGGAGGTTACTTTCAAGG+TGG 0.764262 8_1:-77713864 Msa1216110:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TTATTATTTTGATTATTGTT+TGG + chr8_1:77714098-77714117 None:intergenic 10.0%
!!! TTTATATGTGTTTTATATTT+TGG - chr8_1:77715679-77715698 Msa1216110:five_prime_UTR 10.0%
!!! TTATATGTGTTTTATATTTT+GGG - chr8_1:77715680-77715699 Msa1216110:five_prime_UTR 10.0%
!! TAAAGCAAAAAAAATAAAGA+TGG + chr8_1:77713635-77713654 None:intergenic 15.0%
!! AAAATCTTACAGAAAATTGA+TGG - chr8_1:77713798-77713817 Msa1216110:CDS 20.0%
!! ATAATTGAAAGCTATGATTA+AGG + chr8_1:77713867-77713886 None:intergenic 20.0%
!! AACATTTACTCTCAAAATTA+AGG + chr8_1:77713913-77713932 None:intergenic 20.0%
!!! TTTTGATTATTGTTTGGTTT+GGG + chr8_1:77714092-77714111 None:intergenic 20.0%
!!! ATTTTGATTATTGTTTGGTT+TGG + chr8_1:77714093-77714112 None:intergenic 20.0%
!!! TAATGGATTTCAAAAAATGA+TGG - chr8_1:77714988-77715007 Msa1216110:CDS 20.0%
!!! AATGGATTTCAAAAAATGAT+GGG - chr8_1:77714989-77715008 Msa1216110:CDS 20.0%
!! ATATTGCATAAAATTAGAGA+GGG + chr8_1:77715481-77715500 None:intergenic 20.0%
!! TATATTGCATAAAATTAGAG+AGG + chr8_1:77715482-77715501 None:intergenic 20.0%
!! TACTATGTTAATTATGTTCT+TGG - chr8_1:77715629-77715648 Msa1216110:five_prime_UTR 20.0%
!! ACTATGTTAATTATGTTCTT+GGG - chr8_1:77715630-77715649 Msa1216110:five_prime_UTR 20.0%
!! AAATCAATGTTATTGAGAAT+GGG - chr8_1:77715734-77715753 Msa1216110:five_prime_UTR 20.0%
!!! TGTTTGGTGTCTTTATTTAT+TGG + chr8_1:77713274-77713293 None:intergenic 25.0%
! AAGGAAAAGAGAGAAATAAA+TGG + chr8_1:77713412-77713431 None:intergenic 25.0%
! TGAAATGAAATGAGAATAGA+AGG + chr8_1:77713431-77713450 None:intergenic 25.0%
!!! TTGTTTGGTTGAGTTTTATT+TGG + chr8_1:77713462-77713481 None:intergenic 25.0%
!! GAGTATTTTATGTTCTTGTT+TGG + chr8_1:77713477-77713496 None:intergenic 25.0%
! CTTGTGATAAATAAAGATCT+GGG + chr8_1:77713536-77713555 None:intergenic 25.0%
! ACTTGTGATAAATAAAGATC+TGG + chr8_1:77713537-77713556 None:intergenic 25.0%
! GTTACTTACTTTATTCCTAT+TGG - chr8_1:77713555-77713574 Msa1216110:three_prime_UTR 25.0%
!!! AGAAGAATTTTTGAAGATAC+AGG - chr8_1:77713588-77713607 Msa1216110:exon 25.0%
!! TCAAAATTAAGGTTCTGTTT+TGG + chr8_1:77713902-77713921 None:intergenic 25.0%
!!! TGATTTTAGTGATGATGAAA+TGG - chr8_1:77714469-77714488 Msa1216110:CDS 25.0%
! GTAGTAATCAAAATAACGAT+GGG - chr8_1:77714894-77714913 Msa1216110:CDS 25.0%
! TAGTAATCAAAATAACGATG+GGG - chr8_1:77714895-77714914 Msa1216110:CDS 25.0%
! TAAAAAACTCATGTTTCACT+GGG + chr8_1:77715510-77715529 None:intergenic 25.0%
! GAAATCAATGTTATTGAGAA+TGG - chr8_1:77715733-77715752 Msa1216110:five_prime_UTR 25.0%
!!! TTTTTTCAGCAATTTAACCG+TGG + chr8_1:77713204-77713223 None:intergenic 30.0%
GGTGATTATAGATCTGAAAA+TGG + chr8_1:77713499-77713518 None:intergenic 30.0%
ATAAAGATGGAGAATGTGAT+GGG + chr8_1:77713622-77713641 None:intergenic 30.0%
AATAAAGATGGAGAATGTGA+TGG + chr8_1:77713623-77713642 None:intergenic 30.0%
TTCTGCATACACAAATAACA+AGG + chr8_1:77713726-77713745 None:intergenic 30.0%
!! TGTGTTGATTAATGAATGAC+AGG - chr8_1:77713945-77713964 Msa1216110:CDS 30.0%
AAGAACATGCAAATTGACAA+TGG - chr8_1:77714143-77714162 Msa1216110:CDS 30.0%
AAATCAGAATCAAAACCAGA+AGG - chr8_1:77714199-77714218 Msa1216110:CDS 30.0%
AATCAGAATCAAAACCAGAA+GGG - chr8_1:77714200-77714219 Msa1216110:CDS 30.0%
CAACAAATACAACAACTACA+AGG - chr8_1:77714254-77714273 Msa1216110:CDS 30.0%
AACAACTTCAACAGATGAAA+GGG - chr8_1:77714324-77714343 Msa1216110:CDS 30.0%
! CAAGATCTAGCTCAATTTAA+AGG - chr8_1:77714350-77714369 Msa1216110:CDS 30.0%
TTAACACCTTTAGCATCTTT+AGG + chr8_1:77714425-77714444 None:intergenic 30.0%
!! TGATGAGTTTGATGATGAAA+TGG - chr8_1:77714532-77714551 Msa1216110:CDS 30.0%
ATGCCAGAAGCTAAAAATAA+TGG - chr8_1:77714842-77714861 Msa1216110:CDS 30.0%
GGTAGTAATCAAAATAACGA+TGG - chr8_1:77714893-77714912 Msa1216110:CDS 30.0%
AGTAATCAAAATAACGATGG+GGG - chr8_1:77714896-77714915 Msa1216110:CDS 30.0%
AATGTTCAGGCTATGAATAA+TGG - chr8_1:77714971-77714990 Msa1216110:CDS 30.0%
CATCAAACAAACAATGTTCA+TGG - chr8_1:77715426-77715445 Msa1216110:CDS 30.0%
CTAAAAAACTCATGTTTCAC+TGG + chr8_1:77715511-77715530 None:intergenic 30.0%
TTCTATAAACTACTCCTCTA+TGG + chr8_1:77715593-77715612 None:intergenic 30.0%
!! AAGAGTCTCTGAAACATAAG+AGG + chr8_1:77713384-77713403 None:intergenic 35.0%
ATCTGGGCTATAGAGAAAAA+TGG + chr8_1:77713520-77713539 None:intergenic 35.0%
CTTCTTTACTCATGACCAAT+AGG + chr8_1:77713573-77713592 None:intergenic 35.0%
AAAGTGAACATACACTGTGA+TGG - chr8_1:77713756-77713775 Msa1216110:CDS 35.0%
GCTTCTTGATGAGAACATTT+GGG + chr8_1:77714031-77714050 None:intergenic 35.0%
AGCTTCTTGATGAGAACATT+TGG + chr8_1:77714032-77714051 None:intergenic 35.0%
ATCAAGAAGCTTGCAAAATC+AGG - chr8_1:77714041-77714060 Msa1216110:CDS 35.0%
TCAAGAAGCTTGCAAAATCA+GGG - chr8_1:77714042-77714061 Msa1216110:CDS 35.0%
ACTGATTAACAACGTTGTTC+TGG + chr8_1:77714121-77714140 None:intergenic 35.0%
ATGCAAATTGACAATGGCAA+AGG - chr8_1:77714149-77714168 Msa1216110:CDS 35.0%
! TGTATTTGTTGACCACCTTT+GGG + chr8_1:77714245-77714264 None:intergenic 35.0%
! TTGTATTTGTTGACCACCTT+TGG + chr8_1:77714246-77714265 None:intergenic 35.0%
CAACAACTTCAACAGATGAA+AGG - chr8_1:77714323-77714342 Msa1216110:CDS 35.0%
!! CATCTTTAGGATTCTGATTC+GGG + chr8_1:77714412-77714431 None:intergenic 35.0%
!! GCATCTTTAGGATTCTGATT+CGG + chr8_1:77714413-77714432 None:intergenic 35.0%
CAGAATCCTAAAGATGCTAA+AGG - chr8_1:77714416-77714435 Msa1216110:CDS 35.0%
CTAAAATCATCCTCATCTTC+AGG + chr8_1:77714458-77714477 None:intergenic 35.0%
!! GAGTTTGATGATGAAATGGT+TGG - chr8_1:77714536-77714555 Msa1216110:CDS 35.0%
! ATGAAGGGTGGCAATTTTAA+TGG - chr8_1:77714653-77714672 Msa1216110:CDS 35.0%
AATAATCAGAATCAAGGTGG+AGG - chr8_1:77714800-77714819 Msa1216110:CDS 35.0%
GGTGGAGGTAACAAAAATAA+TGG - chr8_1:77714815-77714834 Msa1216110:CDS 35.0%
GGAGGTAACAAAAATAATGG+TGG - chr8_1:77714818-77714837 Msa1216110:CDS 35.0%
!!! CCACCATTATTTTTAGCTTC+TGG + chr8_1:77714848-77714867 None:intergenic 35.0%
CCAGAAGCTAAAAATAATGG+TGG - chr8_1:77714845-77714864 Msa1216110:CDS 35.0%
GAAGCTAAAAATAATGGTGG+TGG - chr8_1:77714848-77714867 Msa1216110:CDS 35.0%
AACAAGAATGGAGGGAATAA+TGG - chr8_1:77714872-77714891 Msa1216110:CDS 35.0%
! GGATTTCAAAAAATGATGGG+TGG - chr8_1:77714992-77715011 Msa1216110:CDS 35.0%
!! TTTCAAAAAATGATGGGTGG+TGG - chr8_1:77714995-77715014 Msa1216110:CDS 35.0%
ACAAACAATGTTCATGGTGA+TGG - chr8_1:77715432-77715451 Msa1216110:exon 35.0%
TGCATAAAATTAGAGAGGGT+AGG + chr8_1:77715477-77715496 None:intergenic 35.0%
AAACCCCTTAAGATGAAAAG+GGG + chr8_1:77715563-77715582 None:intergenic 35.0%
GAAACCCCTTAAGATGAAAA+GGG + chr8_1:77715564-77715583 None:intergenic 35.0%
AGAAACCCCTTAAGATGAAA+AGG + chr8_1:77715565-77715584 None:intergenic 35.0%
AATGAAGTCACTCACTTCTG+TGG - chr8_1:77713234-77713253 Msa1216110:three_prime_UTR 40.0%
! CCAAGAGTTTGCTCTATGTT+TGG + chr8_1:77713290-77713309 None:intergenic 40.0%
CCAAACATAGAGCAAACTCT+TGG - chr8_1:77713287-77713306 Msa1216110:three_prime_UTR 40.0%
AGTAGTCACTGAGAGAGAAT+GGG + chr8_1:77713322-77713341 None:intergenic 40.0%
TAGTAGTCACTGAGAGAGAA+TGG + chr8_1:77713323-77713342 None:intergenic 40.0%
TTAGGAAGAGAGAGAATGGT+GGG + chr8_1:77713349-77713368 None:intergenic 40.0%
AGAGTTAGGAAGAGAGAGAA+TGG + chr8_1:77713353-77713372 None:intergenic 40.0%
AAGAGGCAAGTTTGAGAGTT+AGG + chr8_1:77713367-77713386 None:intergenic 40.0%
ACTGAGATAGATGCAGAACA+AGG - chr8_1:77713978-77713997 Msa1216110:CDS 40.0%
GATAGATGCAGAACAAGGAA+AGG - chr8_1:77713983-77714002 Msa1216110:CDS 40.0%
CAAATTGACAATGGCAAAGG+TGG - chr8_1:77714152-77714171 Msa1216110:CDS 40.0%
!! AAAGGTGGTGGAAACAACAA+AGG - chr8_1:77714167-77714186 Msa1216110:CDS 40.0%
GGAAACAATAACCAACCCAA+AGG - chr8_1:77714227-77714246 Msa1216110:CDS 40.0%
AACAATAACCAACCCAAAGG+TGG - chr8_1:77714230-77714249 Msa1216110:CDS 40.0%
ATTTGATGTGCCTGAAGATG+AGG - chr8_1:77714445-77714464 Msa1216110:CDS 40.0%
GAAGGGGGTTTCATCTTATT+AGG + chr8_1:77714569-77714588 None:intergenic 40.0%
TTCATAGCACTCATAAGCTG+TGG + chr8_1:77714638-77714657 None:intergenic 40.0%
ACAGCTTATGAGTGCTATGA+AGG - chr8_1:77714637-77714656 Msa1216110:CDS 40.0%
CAGCTTATGAGTGCTATGAA+GGG - chr8_1:77714638-77714657 Msa1216110:CDS 40.0%
!! AAGGGTGGCAATTTTAATGG+TGG - chr8_1:77714656-77714675 Msa1216110:CDS 40.0%
!!! AATTTTAATGGTGGTGGTGG+CGG - chr8_1:77714665-77714684 Msa1216110:CDS 40.0%
TTCATGCCGTGAATTTGAAC+CGG + chr8_1:77714731-77714750 None:intergenic 40.0%
GTTCAAATTCACGGCATGAA+TGG - chr8_1:77714731-77714750 Msa1216110:CDS 40.0%
! ATGAATGGTGGAAATGGCAA+TGG - chr8_1:77714746-77714765 Msa1216110:CDS 40.0%
AATGGCAATGGAGGAAAGAA+AGG - chr8_1:77714758-77714777 Msa1216110:CDS 40.0%
GGAGGGAATAATCAGAATCA+AGG - chr8_1:77714794-77714813 Msa1216110:CDS 40.0%
GGGAATAATCAGAATCAAGG+TGG - chr8_1:77714797-77714816 Msa1216110:CDS 40.0%
!! AATGGTGGTGGAAACAAGAA+TGG - chr8_1:77714860-77714879 Msa1216110:CDS 40.0%
AAATAACGATGGGGGTAAGA+AGG - chr8_1:77714904-77714923 Msa1216110:CDS 40.0%
AATAACGATGGGGGTAAGAA+GGG - chr8_1:77714905-77714924 Msa1216110:CDS 40.0%
! AAGGGTATGTCGATACCAAT+TGG - chr8_1:77714923-77714942 Msa1216110:CDS 40.0%
TCAATCTCATCCTGGTAGTA+TGG - chr8_1:77715027-77715046 Msa1216110:CDS 40.0%
CAATCTCATCCTGGTAGTAT+GGG - chr8_1:77715028-77715047 Msa1216110:CDS 40.0%
!! GGTGGTGGAGGAAATAATAT+GGG - chr8_1:77715049-77715068 Msa1216110:intron 40.0%
! GTGGTGGAGGAAATAATATG+GGG - chr8_1:77715050-77715069 Msa1216110:intron 40.0%
AGTATGCCTATGAACCGAAT+GGG - chr8_1:77715079-77715098 Msa1216110:intron 40.0%
TACATGTAATTCACCTCAGG+AGG + chr8_1:77715322-77715341 None:intergenic 40.0%
GGATACATGTAATTCACCTC+AGG + chr8_1:77715325-77715344 None:intergenic 40.0%
AAAGCATGTGAGTAAGGATC+TGG + chr8_1:77715367-77715386 None:intergenic 40.0%
! TTGACCCCCTTTTCATCTTA+AGG - chr8_1:77715555-77715574 Msa1216110:five_prime_UTR 40.0%
! TGACCCCCTTTTCATCTTAA+GGG - chr8_1:77715556-77715575 Msa1216110:five_prime_UTR 40.0%
AACCCCTTAAGATGAAAAGG+GGG + chr8_1:77715562-77715581 None:intergenic 40.0%
GGGGTTTCTAATTACCATAG+AGG - chr8_1:77715576-77715595 Msa1216110:five_prime_UTR 40.0%
ATGAAAGAAATTCCCAGCTC+TGG - chr8_1:77715757-77715776 Msa1216110:five_prime_UTR 40.0%
GTAGTCACTGAGAGAGAATG+GGG + chr8_1:77713321-77713340 None:intergenic 45.0%
GTTAGGAAGAGAGAGAATGG+TGG + chr8_1:77713350-77713369 None:intergenic 45.0%
TGCAGAACAAGGAAAGGTCA+CGG - chr8_1:77713989-77714008 Msa1216110:CDS 45.0%
AAGGAAAGGTCACGGTTTCA+GGG - chr8_1:77713997-77714016 Msa1216110:CDS 45.0%
CAGGGAAACATGCTGAGTTA+TGG - chr8_1:77714060-77714079 Msa1216110:CDS 45.0%
ATTGACAATGGCAAAGGTGG+TGG - chr8_1:77714155-77714174 Msa1216110:CDS 45.0%
CAGAATCAAAACCAGAAGGG+TGG - chr8_1:77714203-77714222 Msa1216110:CDS 45.0%
AATCAAAACCAGAAGGGTGG+TGG - chr8_1:77714206-77714225 Msa1216110:CDS 45.0%
TATTGTTTCCACCACCCTTC+TGG + chr8_1:77714217-77714236 None:intergenic 45.0%
TTTGTTGACCACCTTTGGGT+TGG + chr8_1:77714241-77714260 None:intergenic 45.0%
!! TAGGATTCTGATTCGGGTTC+TGG + chr8_1:77714406-77714425 None:intergenic 45.0%
GGGGGTTTCATCTTATTAGG+TGG + chr8_1:77714566-77714585 None:intergenic 45.0%
AAACCCCCTTCTATGCCTAT+GGG - chr8_1:77714578-77714597 Msa1216110:CDS 45.0%
ATTCCCCATAGGCATAGAAG+GGG + chr8_1:77714585-77714604 None:intergenic 45.0%
CATTCCCCATAGGCATAGAA+GGG + chr8_1:77714586-77714605 None:intergenic 45.0%
GGTGCTCACATGATGTTGAA+TGG - chr8_1:77714605-77714624 Msa1216110:CDS 45.0%
CTTATGAGTGCTATGAAGGG+TGG - chr8_1:77714641-77714660 Msa1216110:CDS 45.0%
!! GGTGGCAATTTTAATGGTGG+TGG - chr8_1:77714659-77714678 Msa1216110:CDS 45.0%
!!! GGCAATTTTAATGGTGGTGG+TGG - chr8_1:77714662-77714681 Msa1216110:CDS 45.0%
CAAATTCACGGCATGAATGG+TGG - chr8_1:77714734-77714753 Msa1216110:CDS 45.0%
! AATGGTGGAAATGGCAATGG+AGG - chr8_1:77714749-77714768 Msa1216110:CDS 45.0%
AATGGAGGAAAGAAAGGTGG+TGG - chr8_1:77714764-77714783 Msa1216110:CDS 45.0%
! GTGGTGGAAACAAGAATGGA+GGG - chr8_1:77714864-77714883 Msa1216110:CDS 45.0%
GGTATGTCGATACCAATTGG+TGG - chr8_1:77714926-77714945 Msa1216110:CDS 45.0%
ATGTCGATACCAATTGGTGG+CGG - chr8_1:77714929-77714948 Msa1216110:CDS 45.0%
!! CAAAAAATGATGGGTGGTGG+AGG - chr8_1:77714998-77715017 Msa1216110:CDS 45.0%
!! GGGTGGTGGAGGAAATAATA+TGG - chr8_1:77715048-77715067 Msa1216110:intron 45.0%
CGGTTCATAGGCATACTCAT+TGG + chr8_1:77715076-77715095 None:intergenic 45.0%
GAGTATGCCTATGAACCGAA+TGG - chr8_1:77715078-77715097 Msa1216110:intron 45.0%
TTACCACCCATTCGGTTCAT+AGG + chr8_1:77715088-77715107 None:intergenic 45.0%
CAGGAATGTTACCACCCATT+CGG + chr8_1:77715096-77715115 None:intergenic 45.0%
GGTAACATTCCTGCTGTTCA+AGG - chr8_1:77715103-77715122 Msa1216110:intron 45.0%
TGCTGCTGCTGTTGTTGATA+TGG + chr8_1:77715202-77715221 None:intergenic 45.0%
! TCATTGGCTGCTGAAATCTC+TGG + chr8_1:77715285-77715304 None:intergenic 45.0%
AGCAGCCAATGATGTATGCA+AGG - chr8_1:77715293-77715312 Msa1216110:intron 45.0%
ATGTAATTCACCTCAGGAGG+TGG + chr8_1:77715319-77715338 None:intergenic 45.0%
AAGGATCTGGAGGAGGATAA+GGG + chr8_1:77715354-77715373 None:intergenic 45.0%
TAAGGATCTGGAGGAGGATA+AGG + chr8_1:77715355-77715374 None:intergenic 45.0%
! TCGCTGAAAGCATGTGAGTA+AGG + chr8_1:77715373-77715392 None:intergenic 45.0%
GAATCACATGACATTGCAGC+TGG + chr8_1:77715407-77715426 None:intergenic 45.0%
! GACCCCCTTTTCATCTTAAG+GGG - chr8_1:77715557-77715576 Msa1216110:five_prime_UTR 45.0%
AGAAATGAGCAACCAGAGCT+GGG + chr8_1:77715772-77715791 None:intergenic 45.0%
CAAGGAAAGGTCACGGTTTC+AGG - chr8_1:77713996-77714015 Msa1216110:CDS 50.0%
TGAAGTTGTTGCTGCTGCTG+AGG + chr8_1:77714287-77714306 None:intergenic 50.0%
GAAACCCCCTTCTATGCCTA+TGG - chr8_1:77714577-77714596 Msa1216110:CDS 50.0%
AACCCCCTTCTATGCCTATG+GGG - chr8_1:77714579-77714598 Msa1216110:CDS 50.0%
TTCCCCATAGGCATAGAAGG+GGG + chr8_1:77714584-77714603 None:intergenic 50.0%
CCATTCCCCATAGGCATAGA+AGG + chr8_1:77714587-77714606 None:intergenic 50.0%
CCTTCTATGCCTATGGGGAA+TGG - chr8_1:77714584-77714603 Msa1216110:CDS 50.0%
ATGTGAGCACCATTCCCCAT+AGG + chr8_1:77714596-77714615 None:intergenic 50.0%
GGAAATGGACAGAAACCTGG+TGG - chr8_1:77714686-77714705 Msa1216110:CDS 50.0%
AATGGACAGAAACCTGGTGG+TGG - chr8_1:77714689-77714708 Msa1216110:CDS 50.0%
!! CCTGTGCCGGTTCAAATTCA+CGG - chr8_1:77714722-77714741 Msa1216110:CDS 50.0%
! CACGGCATGAATGGTGGAAA+TGG - chr8_1:77714740-77714759 Msa1216110:CDS 50.0%
GGCAATGGAGGAAAGAAAGG+TGG - chr8_1:77714761-77714780 Msa1216110:CDS 50.0%
!! GGTGGTGGAAACAAGAATGG+AGG - chr8_1:77714863-77714882 Msa1216110:CDS 50.0%
!! AAAATGATGGGTGGTGGAGG+TGG - chr8_1:77715001-77715020 Msa1216110:CDS 50.0%
TCTCATCCTGGTAGTATGGG+TGG - chr8_1:77715031-77715050 Msa1216110:CDS 50.0%
ATGCCTATGAACCGAATGGG+TGG - chr8_1:77715082-77715101 Msa1216110:intron 50.0%
TCCTGCTGTTCAAGGTCTAC+CGG - chr8_1:77715111-77715130 Msa1216110:intron 50.0%
! GGAGGAGGTTACTTTCAAGG+TGG - chr8_1:77715139-77715158 Msa1216110:intron 50.0%
! GGAGGTTACTTTCAAGGTGG+TGG - chr8_1:77715142-77715161 Msa1216110:intron 50.0%
! GGTTACTTTCAAGGTGGTGG+TGG - chr8_1:77715145-77715164 Msa1216110:intron 50.0%
!! TACTTTCAAGGTGGTGGTGG+TGG - chr8_1:77715148-77715167 Msa1216110:intron 50.0%
GGATTCCCCTGCATCATTTC+CGG + chr8_1:77715181-77715200 None:intergenic 50.0%
GCAGCAGCAGCAACAGTTAA+TGG - chr8_1:77715213-77715232 Msa1216110:CDS 50.0%
! GAACCAACAACGTGCTGCTA+TGG - chr8_1:77715249-77715268 Msa1216110:CDS 50.0%
! GGTGGCCTTGCATACATCAT+TGG + chr8_1:77715301-77715320 None:intergenic 50.0%
TCTGGAGGAGGATAAGGGTA+AGG + chr8_1:77715349-77715368 None:intergenic 50.0%
TGTGAGTAAGGATCTGGAGG+AGG + chr8_1:77715361-77715380 None:intergenic 50.0%
GCATGTGAGTAAGGATCTGG+AGG + chr8_1:77715364-77715383 None:intergenic 50.0%
GAGAAATGAGCAACCAGAGC+TGG + chr8_1:77715773-77715792 None:intergenic 50.0%
GGTCACGGTTTCAGGGAATG+TGG - chr8_1:77714004-77714023 Msa1216110:CDS 55.0%
!! TTCTGATTCGGGTTCTGGCC+CGG + chr8_1:77714401-77714420 None:intergenic 55.0%
!! AATGGTGGTGGTGGCGGAAA+TGG - chr8_1:77714671-77714690 Msa1216110:CDS 55.0%
GGCGGAAATGGACAGAAACC+TGG - chr8_1:77714683-77714702 Msa1216110:CDS 55.0%
CCGTGAATTTGAACCGGCAC+AGG + chr8_1:77714725-77714744 None:intergenic 55.0%
! GGAGGAAAGAAAGGTGGTGG+TGG - chr8_1:77714767-77714786 Msa1216110:CDS 55.0%
!! GGAAAGAAAGGTGGTGGTGG+TGG - chr8_1:77714770-77714789 Msa1216110:CDS 55.0%
!! AAGAAAGGTGGTGGTGGTGG+TGG - chr8_1:77714773-77714792 Msa1216110:CDS 55.0%
!! TCGATACCAATTGGTGGCGG+AGG - chr8_1:77714932-77714951 Msa1216110:CDS 55.0%
!! ATACCAATTGGTGGCGGAGG+TGG - chr8_1:77714935-77714954 Msa1216110:CDS 55.0%
! AGGCGGTGGTGGTAATGTTC+AGG - chr8_1:77714958-77714977 Msa1216110:CDS 55.0%
! GGTGGTGGTCAATCTCATCC+TGG - chr8_1:77715019-77715038 Msa1216110:CDS 55.0%
CATCCTGGTAGTATGGGTGG+TGG - chr8_1:77715034-77715053 Msa1216110:CDS 55.0%
! GGCGGAGGAGGTTACTTTCA+AGG - chr8_1:77715136-77715155 Msa1216110:intron 55.0%
TCCAGGACCGGAAATGATGC+AGG - chr8_1:77715171-77715190 Msa1216110:intron 55.0%
CCAGGACCGGAAATGATGCA+GGG - chr8_1:77715172-77715191 Msa1216110:intron 55.0%
CAGGACCGGAAATGATGCAG+GGG - chr8_1:77715173-77715192 Msa1216110:intron 55.0%
CCACCATAGCAGCACGTTGT+TGG + chr8_1:77715255-77715274 None:intergenic 55.0%
! CCAACAACGTGCTGCTATGG+TGG - chr8_1:77715252-77715271 Msa1216110:CDS 55.0%
GGAGGAGGATAAGGGTAAGG+AGG + chr8_1:77715346-77715365 None:intergenic 55.0%
!! TTCTGGCCCGGGTGCTGATT+CGG + chr8_1:77714389-77714408 None:intergenic 60.0%
!! TCTGATTCGGGTTCTGGCCC+GGG + chr8_1:77714400-77714419 None:intergenic 60.0%
!! GGACAGAAACCTGGTGGTGG+TGG - chr8_1:77714692-77714711 Msa1216110:CDS 60.0%
!! CAGAAACCTGGTGGTGGTGG+TGG - chr8_1:77714695-77714714 Msa1216110:CDS 60.0%
!! AAACCTGGTGGTGGTGGTGG+AGG - chr8_1:77714698-77714717 Msa1216110:CDS 60.0%
!! AAAGGTGGTGGTGGTGGTGG+AGG - chr8_1:77714776-77714795 Msa1216110:CDS 60.0%
!! AAGGTGGTGGTGGTGGTGGA+GGG - chr8_1:77714777-77714796 Msa1216110:CDS 60.0%
!! ATGATGGGTGGTGGAGGTGG+TGG - chr8_1:77715004-77715023 Msa1216110:CDS 60.0%
CCTCCACCACCCATACTACC+AGG + chr8_1:77715040-77715059 None:intergenic 60.0%
! CCTGGTAGTATGGGTGGTGG+AGG - chr8_1:77715037-77715056 Msa1216110:CDS 60.0%
GCCGGTAGACCTTGAACAGC+AGG + chr8_1:77715115-77715134 None:intergenic 60.0%
GCTGTTCAAGGTCTACCGGC+AGG - chr8_1:77715115-77715134 Msa1216110:intron 60.0%
GTTCAAGGTCTACCGGCAGG+CGG - chr8_1:77715118-77715137 Msa1216110:intron 60.0%
AAGTAACCTCCTCCGCCTGC+CGG + chr8_1:77715133-77715152 None:intergenic 60.0%
CCCTGCATCATTTCCGGTCC+TGG + chr8_1:77715175-77715194 None:intergenic 60.0%
GTATGCAAGGCCACCTCCTG+AGG - chr8_1:77715306-77715325 Msa1216110:intron 60.0%
GATGCCGCCGAATCAGCACC+CGG - chr8_1:77714379-77714398 Msa1216110:CDS 65.0%
ATGCCGCCGAATCAGCACCC+GGG - chr8_1:77714380-77714399 Msa1216110:CDS 65.0%
!! TGGTGGTGGAGGACCTGTGC+CGG - chr8_1:77714709-77714728 Msa1216110:CDS 65.0%
CCTCCACCTCCGCCACCAAT+TGG + chr8_1:77714941-77714960 None:intergenic 65.0%
!! CCAATTGGTGGCGGAGGTGG+AGG - chr8_1:77714938-77714957 Msa1216110:CDS 65.0%
!! ATTGGTGGCGGAGGTGGAGG+CGG - chr8_1:77714941-77714960 Msa1216110:CDS 65.0%
!! CAAGGTGGTGGTGGTGGTCC+AGG - chr8_1:77715154-77715173 Msa1216110:intron 65.0%
!! TGGTGGTGGTGGTCCAGGAC+CGG - chr8_1:77715159-77715178 Msa1216110:intron 65.0%
!! TGGCCCGGGTGCTGATTCGG+CGG + chr8_1:77714386-77714405 None:intergenic 70.0%
GGTCCTCCACCACCACCACC+AGG + chr8_1:77714704-77714723 None:intergenic 70.0%
CAAGGTCTACCGGCAGGCGG+AGG - chr8_1:77715121-77715140 Msa1216110:intron 70.0%
GGTCTACCGGCAGGCGGAGG+AGG - chr8_1:77715124-77715143 Msa1216110:intron 75.0%
!!! GGTGGCGGAGGTGGAGGCGG+TGG - chr8_1:77714944-77714963 Msa1216110:CDS 80.0%
! GGCGGAGGTGGAGGCGGTGG+TGG - chr8_1:77714947-77714966 Msa1216110:CDS 80.0%
Chromosome Type Strat End Strand Name
chr8_1 gene 77713199 77715826 77713199 ID=Msa1216110;Name=Msa1216110
chr8_1 mRNA 77713199 77715826 77713199 ID=Msa1216110-mRNA-1;Parent=Msa1216110;Name=Msa1216110-mRNA-1;_AED=0.03;_eAED=0.03;_QI=381|1|1|1|1|1|3|403|520
chr8_1 exon 77713199 77715058 77713199 ID=Msa1216110-mRNA-1:exon:26848;Parent=Msa1216110-mRNA-1
chr8_1 exon 77715206 77715281 77715206 ID=Msa1216110-mRNA-1:exon:26847;Parent=Msa1216110-mRNA-1
chr8_1 exon 77715416 77715826 77715416 ID=Msa1216110-mRNA-1:exon:26846;Parent=Msa1216110-mRNA-1
chr8_1 five_prime_UTR 77715446 77715826 77715446 ID=Msa1216110-mRNA-1:five_prime_utr;Parent=Msa1216110-mRNA-1
chr8_1 CDS 77715416 77715445 77715416 ID=Msa1216110-mRNA-1:cds;Parent=Msa1216110-mRNA-1
chr8_1 CDS 77715206 77715281 77715206 ID=Msa1216110-mRNA-1:cds;Parent=Msa1216110-mRNA-1
chr8_1 CDS 77713602 77715058 77713602 ID=Msa1216110-mRNA-1:cds;Parent=Msa1216110-mRNA-1
chr8_1 three_prime_UTR 77713199 77713601 77713199 ID=Msa1216110-mRNA-1:three_prime_utr;Parent=Msa1216110-mRNA-1
Gene Sequence

>Msa1216110

ATGAGTAAAGAAGAATTTTTGAAGATACAGAAATCTGTTCTAAAAGTGAACATACACTGTGATGGATGTAAACACAAAGTAAAGAAAATCTTACAGAAAATTGATGGAGTATTTACAACTGAGATAGATGCAGAACAAGGAAAGGTCACGGTTTCAGGGAATGTGGACCCAAATGTTCTCATCAAGAAGCTTGCAAAATCAGGGAAACATGCTGAGTTATGGAGTGTTCCCAAACCAAACAATAATCAAAATAATAACCAGAACAACGTTGTTAATCAGTTAAAGAACATGCAAATTGACAATGGCAAAGGTGGTGGAAACAACAAAGGTCAGAATCAAAATCAGAATCAAAACCAGAAGGGTGGTGGAAACAATAACCAACCCAAAGGTGGTCAACAAATACAACAACTACAAGGACTAAATCCTCAGCAGCAGCAACAACTTCAGCTTCAACAACAGTTGCAACAACTTCAACAGATGAAAGGGTTTCAAGATCTAGCTCAATTTAAAGGCATGAAGATGCCGCCGAATCAGCACCCGGGCCAGAACCCGAATCAGAATCCTAAAGATGCTAAAGGTGTTAAATTTGATGTGCCTGAAGATGAGGATGATTTTAGTGATGATGAAATGGATGATTTTGATGACGACGAAGATGATGATGAAGATTTTGATGATGAGTTTGATGATGAAATGGTTGGTTTGCCACCTAATAAGATGAAACCCCCTTCTATGCCTATGGGGAATGGTGCTCACATGATGTTGAATGGTAATCATCCACAGCTTATGAGTGCTATGAAGGGTGGCAATTTTAATGGTGGTGGTGGCGGAAATGGACAGAAACCTGGTGGTGGTGGTGGAGGACCTGTGCCGGTTCAAATTCACGGCATGAATGGTGGAAATGGCAATGGAGGAAAGAAAGGTGGTGGTGGTGGTGGAGGGAATAATCAGAATCAAGGTGGAGGTAACAAAAATAATGGTGGCATGCCAGAAGCTAAAAATAATGGTGGTGGAAACAAGAATGGAGGGAATAATGGTAGTAATCAAAATAACGATGGGGGTAAGAAGGGTATGTCGATACCAATTGGTGGCGGAGGTGGAGGCGGTGGTGGTAATGTTCAGGCTATGAATAATGGATTTCAAAAAATGATGGGTGGTGGAGGTGGTGGTCAATCTCATCCTGGTAGTATGGGTGGTGGAGGAAATAATATGGGGCCAATGAGTATGCCTATGAACCGAATGGGTGGTAACATTCCTGCTGTTCAAGGTCTACCGGCAGGCGGAGGAGGTTACTTTCAAGGTGGTGGTGGTGGTCCAGGACCGGAAATGATGCAGGGGAATCCATATCAACAACAGCAGCAGCAGCAACAGTTAATGGCTGCTGCAATGATGAACCAACAACGTGCTGCTATGGTGGAAAATGACCAGAGATTTCAGCAGCCAATGATGTATGCAAGGCCACCTCCTGAGGTGAATTACATGTATCCTCCTTACCCTTATCCTCCTCCAGATCCTTACTCACATGCTTTCAGCGATGAGAACACTTCCAGCTGCAATGTCATGTGA

Protein sequence

>Msa1216110

MSKEEFLKIQKSVLKVNIHCDGCKHKVKKILQKIDGVFTTEIDAEQGKVTVSGNVDPNVLIKKLAKSGKHAELWSVPKPNNNQNNNQNNVVNQLKNMQIDNGKGGGNNKGQNQNQNQNQKGGGNNNQPKGGQQIQQLQGLNPQQQQQLQLQQQLQQLQQMKGFQDLAQFKGMKMPPNQHPGQNPNQNPKDAKGVKFDVPEDEDDFSDDEMDDFDDDEDDDEDFDDEFDDEMVGLPPNKMKPPSMPMGNGAHMMLNGNHPQLMSAMKGGNFNGGGGGNGQKPGGGGGGPVPVQIHGMNGGNGNGGKKGGGGGGGNNQNQGGGNKNNGGMPEAKNNGGGNKNGGNNGSNQNNDGGKKGMSIPIGGGGGGGGGNVQAMNNGFQKMMGGGGGGQSHPGSMGGGGNNMGPMSMPMNRMGGNIPAVQGLPAGGGGYFQGGGGGPGPEMMQGNPYQQQQQQQQLMAAAMMNQQRAAMVENDQRFQQPMMYARPPPEVNYMYPPYPYPPPDPYSHAFSDENTSSCNVM*