Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0062170 | Msa0715520 | 0.823562 | 1.295768e-53 | -8.615850e-47 |
Msa0715520 | Msa0767410 | 0.925565 | 1.545172e-90 | -8.615850e-47 |
Msa0715520 | Msa0934320 | 0.936047 | 3.240645e-97 | -8.615850e-47 |
Msa0715520 | Msa1350680 | 0.926174 | 6.737314e-91 | -8.615850e-47 |
Msa0234270 | Msa0715520 | 0.899620 | 1.654966e-77 | -8.615850e-47 |
Msa0234320 | Msa0715520 | 0.919299 | 5.352717e-87 | -8.615850e-47 |
Msa0483040 | Msa0715520 | 0.877142 | 7.964761e-69 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 30 sgRNAs with CRISPR-Local
Find 124 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TGTGAAGGGAAAATTGAAAA+TGG | 0.224177 | 5_1:-8578262 | None:intergenic |
GAAGTTCTCCTTCAAAGTTT+TGG | 0.321181 | 5_1:+8578857 | Msa0715520:CDS |
CACAATCAGATTCAACAAAA+AGG | 0.337028 | 5_1:-8578390 | None:intergenic |
CAAAACCGTAAAAGAGAGAG+AGG | 0.424602 | 5_1:-8578296 | None:intergenic |
AAAAGAGAGAGAGGGAGCTT+AGG | 0.449508 | 5_1:-8578287 | None:intergenic |
GTGAAGGGAAAATTGAAAAT+GGG | 0.459730 | 5_1:-8578261 | None:intergenic |
GAGGGAGCTTAGGTTTGTGA+AGG | 0.467345 | 5_1:-8578277 | None:intergenic |
GGAAGAAGAAGATAATAGTA+AGG | 0.475273 | 5_1:-8578049 | None:intergenic |
GAGGTGGCAACTGCAACAAC+TGG | 0.477158 | 5_1:+8578485 | Msa0715520:CDS |
AGAAGATAATAGTAAGGCAG+AGG | 0.485632 | 5_1:-8578043 | None:intergenic |
TTTGTTGAATCTGATTGTGC+AGG | 0.486427 | 5_1:+8578394 | Msa0715520:CDS |
ATTCAAGGAATGGGTCGGTT+GGG | 0.489585 | 5_1:+8578424 | Msa0715520:CDS |
ACGCTGGGAGATGGTGGATC+AGG | 0.490895 | 5_1:+8578457 | Msa0715520:CDS |
GATGGTGGATCAGGACTTAG+AGG | 0.492687 | 5_1:+8578466 | Msa0715520:CDS |
GGGAAATGAGTGGAAGGAGG+TGG | 0.497421 | 5_1:-8578070 | None:intergenic |
GAAGGAACAACGCTGGGAGA+TGG | 0.499001 | 5_1:+8578448 | Msa0715520:CDS |
TGTGCAGGTTGTCAGATTCA+AGG | 0.512612 | 5_1:+8578409 | Msa0715520:CDS |
AGGGAGCTTAGGTTTGTGAA+GGG | 0.520034 | 5_1:-8578276 | None:intergenic |
GATTCAAGGAATGGGTCGGT+TGG | 0.520448 | 5_1:+8578423 | Msa0715520:CDS |
GGTTGTCAGATTCAAGGAAT+GGG | 0.533310 | 5_1:+8578415 | Msa0715520:CDS |
AGGTTGTCAGATTCAAGGAA+TGG | 0.541574 | 5_1:+8578414 | Msa0715520:CDS |
GGAATGGGTCGGTTGGGAGA+AGG | 0.541805 | 5_1:+8578430 | Msa0715520:CDS |
GGAACAACGCTGGGAGATGG+TGG | 0.563155 | 5_1:+8578451 | Msa0715520:CDS |
TTGGGAGAAGGAACAACGCT+GGG | 0.568199 | 5_1:+8578442 | Msa0715520:CDS |
GTCAGATTCAAGGAATGGGT+CGG | 0.597985 | 5_1:+8578419 | Msa0715520:CDS |
TTATGACAAATTGAAATCCA+AGG | 0.605167 | 5_1:-8578208 | None:intergenic |
AAAGATGAAAGAAATTGTGG+AGG | 0.617363 | 5_1:-8578103 | None:intergenic |
GTTGGGAGAAGGAACAACGC+TGG | 0.636641 | 5_1:+8578441 | Msa0715520:CDS |
AAAACCGTAAAAGAGAGAGA+GGG | 0.637385 | 5_1:-8578295 | None:intergenic |
GGTGGATCAGGACTTAGAGG+TGG | 0.682012 | 5_1:+8578469 | Msa0715520:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!!! | TTGGATACGTTTTTTATTTT+GGG | - | chr5_1:8578530-8578549 | None:intergenic | 20.0% |
!!! | TTGGATACGTTTTTTATTTT+GGG | - | chr5_1:8578530-8578549 | None:intergenic | 20.0% |
! | GAAAAAGATGAAAGAAATTG+TGG | - | chr5_1:8578109-8578128 | None:intergenic | 25.0% |
!!! | TGTTGTTATTTTTTCTTCCT+TGG | + | chr5_1:8578191-8578210 | Msa0715520:five_prime_UTR | 25.0% |
! | TTATGACAAATTGAAATCCA+AGG | - | chr5_1:8578211-8578230 | None:intergenic | 25.0% |
! | AAAAATTGAAACCCTAAAAC+TGG | - | chr5_1:8578326-8578345 | None:intergenic | 25.0% |
!!! | ACGTTTTTTATTTTGGGAAA+AGG | - | chr5_1:8578524-8578543 | None:intergenic | 25.0% |
!!! | CTTGGATACGTTTTTTATTT+TGG | - | chr5_1:8578531-8578550 | None:intergenic | 25.0% |
!!! | ACATTTTGATACAGAAACAA+AGG | - | chr5_1:8578778-8578797 | None:intergenic | 25.0% |
!!! | AACTTTTTCCAAAACTTTGA+AGG | - | chr5_1:8578868-8578887 | None:intergenic | 25.0% |
! | GAAAAAGATGAAAGAAATTG+TGG | - | chr5_1:8578109-8578128 | None:intergenic | 25.0% |
!!! | TGTTGTTATTTTTTCTTCCT+TGG | + | chr5_1:8578191-8578210 | Msa0715520:five_prime_UTR | 25.0% |
! | TTATGACAAATTGAAATCCA+AGG | - | chr5_1:8578211-8578230 | None:intergenic | 25.0% |
! | AAAAATTGAAACCCTAAAAC+TGG | - | chr5_1:8578326-8578345 | None:intergenic | 25.0% |
!!! | ACGTTTTTTATTTTGGGAAA+AGG | - | chr5_1:8578524-8578543 | None:intergenic | 25.0% |
!!! | CTTGGATACGTTTTTTATTT+TGG | - | chr5_1:8578531-8578550 | None:intergenic | 25.0% |
!!! | ACATTTTGATACAGAAACAA+AGG | - | chr5_1:8578778-8578797 | None:intergenic | 25.0% |
!!! | AACTTTTTCCAAAACTTTGA+AGG | - | chr5_1:8578868-8578887 | None:intergenic | 25.0% |
GGAAGAAGAAGATAATAGTA+AGG | - | chr5_1:8578052-8578071 | None:intergenic | 30.0% | |
! | AAATTGTGGAGGACATTTTT+GGG | - | chr5_1:8578095-8578114 | None:intergenic | 30.0% |
AAAGATGAAAGAAATTGTGG+AGG | - | chr5_1:8578106-8578125 | None:intergenic | 30.0% | |
GTGAAGGGAAAATTGAAAAT+GGG | - | chr5_1:8578264-8578283 | None:intergenic | 30.0% | |
TGTGAAGGGAAAATTGAAAA+TGG | - | chr5_1:8578265-8578284 | None:intergenic | 30.0% | |
!!! | GGTTTTGTTTTCCAGTTTTA+GGG | + | chr5_1:8578312-8578331 | Msa0715520:five_prime_UTR | 30.0% |
CACAATCAGATTCAACAAAA+AGG | - | chr5_1:8578393-8578412 | None:intergenic | 30.0% | |
!! | AGATTTAAAACAGAAGTGCT+TGG | - | chr5_1:8578549-8578568 | None:intergenic | 30.0% |
! | CAAAATGTGTTTTGCAGATT+CGG | + | chr5_1:8578790-8578809 | Msa0715520:intron | 30.0% |
GGAAGAAGAAGATAATAGTA+AGG | - | chr5_1:8578052-8578071 | None:intergenic | 30.0% | |
! | AAATTGTGGAGGACATTTTT+GGG | - | chr5_1:8578095-8578114 | None:intergenic | 30.0% |
AAAGATGAAAGAAATTGTGG+AGG | - | chr5_1:8578106-8578125 | None:intergenic | 30.0% | |
GTGAAGGGAAAATTGAAAAT+GGG | - | chr5_1:8578264-8578283 | None:intergenic | 30.0% | |
TGTGAAGGGAAAATTGAAAA+TGG | - | chr5_1:8578265-8578284 | None:intergenic | 30.0% | |
!!! | GGTTTTGTTTTCCAGTTTTA+GGG | + | chr5_1:8578312-8578331 | Msa0715520:five_prime_UTR | 30.0% |
CACAATCAGATTCAACAAAA+AGG | - | chr5_1:8578393-8578412 | None:intergenic | 30.0% | |
!! | AGATTTAAAACAGAAGTGCT+TGG | - | chr5_1:8578549-8578568 | None:intergenic | 30.0% |
! | CAAAATGTGTTTTGCAGATT+CGG | + | chr5_1:8578790-8578809 | Msa0715520:intron | 30.0% |
AGAAGATAATAGTAAGGCAG+AGG | - | chr5_1:8578046-8578065 | None:intergenic | 35.0% | |
! | AATTGTGGAGGACATTTTTG+GGG | - | chr5_1:8578094-8578113 | None:intergenic | 35.0% |
! | GAAATTGTGGAGGACATTTT+TGG | - | chr5_1:8578096-8578115 | None:intergenic | 35.0% |
AAAACCGTAAAAGAGAGAGA+GGG | - | chr5_1:8578298-8578317 | None:intergenic | 35.0% | |
!!! | CGGTTTTGTTTTCCAGTTTT+AGG | + | chr5_1:8578311-8578330 | Msa0715520:five_prime_UTR | 35.0% |
TTTGTTGAATCTGATTGTGC+AGG | + | chr5_1:8578394-8578413 | Msa0715520:CDS | 35.0% | |
CAGTGTGTTTATCAATTCTG+TGG | + | chr5_1:8578641-8578660 | Msa0715520:intron | 35.0% | |
AAACAAAGGACATACCTGTT+TGG | - | chr5_1:8578764-8578783 | None:intergenic | 35.0% | |
! | GAAGTTCTCCTTCAAAGTTT+TGG | + | chr5_1:8578857-8578876 | Msa0715520:CDS | 35.0% |
AGAAGATAATAGTAAGGCAG+AGG | - | chr5_1:8578046-8578065 | None:intergenic | 35.0% | |
! | AATTGTGGAGGACATTTTTG+GGG | - | chr5_1:8578094-8578113 | None:intergenic | 35.0% |
! | GAAATTGTGGAGGACATTTT+TGG | - | chr5_1:8578096-8578115 | None:intergenic | 35.0% |
AAAACCGTAAAAGAGAGAGA+GGG | - | chr5_1:8578298-8578317 | None:intergenic | 35.0% | |
!!! | CGGTTTTGTTTTCCAGTTTT+AGG | + | chr5_1:8578311-8578330 | Msa0715520:five_prime_UTR | 35.0% |
TTTGTTGAATCTGATTGTGC+AGG | + | chr5_1:8578394-8578413 | Msa0715520:CDS | 35.0% | |
CAGTGTGTTTATCAATTCTG+TGG | + | chr5_1:8578641-8578660 | Msa0715520:intron | 35.0% | |
AAACAAAGGACATACCTGTT+TGG | - | chr5_1:8578764-8578783 | None:intergenic | 35.0% | |
! | GAAGTTCTCCTTCAAAGTTT+TGG | + | chr5_1:8578857-8578876 | Msa0715520:CDS | 35.0% |
!! | ACATTTTTGGGGGAAATGAG+TGG | - | chr5_1:8578083-8578102 | None:intergenic | 40.0% |
!! | ATTGTGGAGGACATTTTTGG+GGG | - | chr5_1:8578093-8578112 | None:intergenic | 40.0% |
CAAAACCGTAAAAGAGAGAG+AGG | - | chr5_1:8578299-8578318 | None:intergenic | 40.0% | |
AGGTTGTCAGATTCAAGGAA+TGG | + | chr5_1:8578414-8578433 | Msa0715520:CDS | 40.0% | |
GGTTGTCAGATTCAAGGAAT+GGG | + | chr5_1:8578415-8578434 | Msa0715520:CDS | 40.0% | |
ATCAAACGTGTGTTTGTGGA+TGG | - | chr5_1:8578726-8578745 | None:intergenic | 40.0% | |
CATGATCAAACGTGTGTTTG+TGG | - | chr5_1:8578730-8578749 | None:intergenic | 40.0% | |
CACAAACACACGTTTGATCA+TGG | + | chr5_1:8578728-8578747 | Msa0715520:intron | 40.0% | |
ATGGAAATACGCTACCAAAC+AGG | + | chr5_1:8578747-8578766 | Msa0715520:intron | 40.0% | |
!! | ACATTTTTGGGGGAAATGAG+TGG | - | chr5_1:8578083-8578102 | None:intergenic | 40.0% |
!! | ATTGTGGAGGACATTTTTGG+GGG | - | chr5_1:8578093-8578112 | None:intergenic | 40.0% |
CAAAACCGTAAAAGAGAGAG+AGG | - | chr5_1:8578299-8578318 | None:intergenic | 40.0% | |
AGGTTGTCAGATTCAAGGAA+TGG | + | chr5_1:8578414-8578433 | Msa0715520:CDS | 40.0% | |
GGTTGTCAGATTCAAGGAAT+GGG | + | chr5_1:8578415-8578434 | Msa0715520:CDS | 40.0% | |
ATCAAACGTGTGTTTGTGGA+TGG | - | chr5_1:8578726-8578745 | None:intergenic | 40.0% | |
CATGATCAAACGTGTGTTTG+TGG | - | chr5_1:8578730-8578749 | None:intergenic | 40.0% | |
CACAAACACACGTTTGATCA+TGG | + | chr5_1:8578728-8578747 | Msa0715520:intron | 40.0% | |
ATGGAAATACGCTACCAAAC+AGG | + | chr5_1:8578747-8578766 | Msa0715520:intron | 40.0% | |
!! | TTTTGGGGGAAATGAGTGGA+AGG | - | chr5_1:8578079-8578098 | None:intergenic | 45.0% |
AGGGAGCTTAGGTTTGTGAA+GGG | - | chr5_1:8578279-8578298 | None:intergenic | 45.0% | |
AAAAGAGAGAGAGGGAGCTT+AGG | - | chr5_1:8578290-8578309 | None:intergenic | 45.0% | |
! | AGCTCCCTCTCTCTCTTTTA+CGG | + | chr5_1:8578291-8578310 | Msa0715520:five_prime_UTR | 45.0% |
TGTGCAGGTTGTCAGATTCA+AGG | + | chr5_1:8578409-8578428 | Msa0715520:CDS | 45.0% | |
GTCAGATTCAAGGAATGGGT+CGG | + | chr5_1:8578419-8578438 | Msa0715520:CDS | 45.0% | |
ATTCAAGGAATGGGTCGGTT+GGG | + | chr5_1:8578424-8578443 | Msa0715520:CDS | 45.0% | |
CCAAGCTTCTGCAGTTAACA+TGG | - | chr5_1:8578674-8578693 | None:intergenic | 45.0% | |
CCATGTTAACTGCAGAAGCT+TGG | + | chr5_1:8578671-8578690 | Msa0715520:intron | 45.0% | |
TAACTGCAGAAGCTTGGTTC+TGG | + | chr5_1:8578677-8578696 | Msa0715520:intron | 45.0% | |
!! | TCTGGAGCTTTTGTAGATCG+CGG | + | chr5_1:8578695-8578714 | Msa0715520:intron | 45.0% |
!! | TTTTGGGGGAAATGAGTGGA+AGG | - | chr5_1:8578079-8578098 | None:intergenic | 45.0% |
AGGGAGCTTAGGTTTGTGAA+GGG | - | chr5_1:8578279-8578298 | None:intergenic | 45.0% | |
AAAAGAGAGAGAGGGAGCTT+AGG | - | chr5_1:8578290-8578309 | None:intergenic | 45.0% | |
! | AGCTCCCTCTCTCTCTTTTA+CGG | + | chr5_1:8578291-8578310 | Msa0715520:five_prime_UTR | 45.0% |
TGTGCAGGTTGTCAGATTCA+AGG | + | chr5_1:8578409-8578428 | Msa0715520:CDS | 45.0% | |
GTCAGATTCAAGGAATGGGT+CGG | + | chr5_1:8578419-8578438 | Msa0715520:CDS | 45.0% | |
ATTCAAGGAATGGGTCGGTT+GGG | + | chr5_1:8578424-8578443 | Msa0715520:CDS | 45.0% | |
CCAAGCTTCTGCAGTTAACA+TGG | - | chr5_1:8578674-8578693 | None:intergenic | 45.0% | |
CCATGTTAACTGCAGAAGCT+TGG | + | chr5_1:8578671-8578690 | Msa0715520:intron | 45.0% | |
TAACTGCAGAAGCTTGGTTC+TGG | + | chr5_1:8578677-8578696 | Msa0715520:intron | 45.0% | |
!! | TCTGGAGCTTTTGTAGATCG+CGG | + | chr5_1:8578695-8578714 | Msa0715520:intron | 45.0% |
AGAGAGAGAGAGAGAGAGAG+AGG | - | chr5_1:8578010-8578029 | None:intergenic | 50.0% | |
GAGGGAGCTTAGGTTTGTGA+AGG | - | chr5_1:8578280-8578299 | None:intergenic | 50.0% | |
GATTCAAGGAATGGGTCGGT+TGG | + | chr5_1:8578423-8578442 | Msa0715520:CDS | 50.0% | |
TTGGGAGAAGGAACAACGCT+GGG | + | chr5_1:8578442-8578461 | Msa0715520:CDS | 50.0% | |
!! | GATGGTGGATCAGGACTTAG+AGG | + | chr5_1:8578466-8578485 | Msa0715520:CDS | 50.0% |
AGAGAGAGAGAGAGAGAGAG+AGG | - | chr5_1:8578010-8578029 | None:intergenic | 50.0% | |
GAGGGAGCTTAGGTTTGTGA+AGG | - | chr5_1:8578280-8578299 | None:intergenic | 50.0% | |
GATTCAAGGAATGGGTCGGT+TGG | + | chr5_1:8578423-8578442 | Msa0715520:CDS | 50.0% | |
TTGGGAGAAGGAACAACGCT+GGG | + | chr5_1:8578442-8578461 | Msa0715520:CDS | 50.0% | |
!! | GATGGTGGATCAGGACTTAG+AGG | + | chr5_1:8578466-8578485 | Msa0715520:CDS | 50.0% |
GAGAGAGAGAGAGAGAGAGG+AGG | - | chr5_1:8578009-8578028 | None:intergenic | 55.0% | |
GGGAAATGAGTGGAAGGAGG+TGG | - | chr5_1:8578073-8578092 | None:intergenic | 55.0% | |
TGGGGGAAATGAGTGGAAGG+AGG | - | chr5_1:8578076-8578095 | None:intergenic | 55.0% | |
GTTGGGAGAAGGAACAACGC+TGG | + | chr5_1:8578441-8578460 | Msa0715520:CDS | 55.0% | |
GAAGGAACAACGCTGGGAGA+TGG | + | chr5_1:8578448-8578467 | Msa0715520:CDS | 55.0% | |
GGTGGATCAGGACTTAGAGG+TGG | + | chr5_1:8578469-8578488 | Msa0715520:CDS | 55.0% | |
GAGGTGGCAACTGCAACAAC+TGG | + | chr5_1:8578485-8578504 | Msa0715520:CDS | 55.0% | |
GAGAGAGAGAGAGAGAGAGG+AGG | - | chr5_1:8578009-8578028 | None:intergenic | 55.0% | |
GGGAAATGAGTGGAAGGAGG+TGG | - | chr5_1:8578073-8578092 | None:intergenic | 55.0% | |
TGGGGGAAATGAGTGGAAGG+AGG | - | chr5_1:8578076-8578095 | None:intergenic | 55.0% | |
GTTGGGAGAAGGAACAACGC+TGG | + | chr5_1:8578441-8578460 | Msa0715520:CDS | 55.0% | |
GAAGGAACAACGCTGGGAGA+TGG | + | chr5_1:8578448-8578467 | Msa0715520:CDS | 55.0% | |
GGTGGATCAGGACTTAGAGG+TGG | + | chr5_1:8578469-8578488 | Msa0715520:CDS | 55.0% | |
GAGGTGGCAACTGCAACAAC+TGG | + | chr5_1:8578485-8578504 | Msa0715520:CDS | 55.0% | |
GGAATGGGTCGGTTGGGAGA+AGG | + | chr5_1:8578430-8578449 | Msa0715520:CDS | 60.0% | |
GGAACAACGCTGGGAGATGG+TGG | + | chr5_1:8578451-8578470 | Msa0715520:CDS | 60.0% | |
!! | ACGCTGGGAGATGGTGGATC+AGG | + | chr5_1:8578457-8578476 | Msa0715520:CDS | 60.0% |
GGAATGGGTCGGTTGGGAGA+AGG | + | chr5_1:8578430-8578449 | Msa0715520:CDS | 60.0% | |
GGAACAACGCTGGGAGATGG+TGG | + | chr5_1:8578451-8578470 | Msa0715520:CDS | 60.0% | |
!! | ACGCTGGGAGATGGTGGATC+AGG | + | chr5_1:8578457-8578476 | Msa0715520:CDS | 60.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_1 | gene | 8577979 | 8578892 | 8577979 | ID=Msa0715520;Name=Msa0715520 |
chr5_1 | mRNA | 8577979 | 8578892 | 8577979 | ID=Msa0715520-mRNA-1;Parent=Msa0715520;Name=Msa0715520-mRNA-1;_AED=0.44;_eAED=0.52;_QI=386|0|0.5|1|1|1|2|0|75 |
chr5_1 | exon | 8577979 | 8578506 | 8577979 | ID=Msa0715520-mRNA-1:exon:3516;Parent=Msa0715520-mRNA-1 |
chr5_1 | exon | 8578807 | 8578892 | 8578807 | ID=Msa0715520-mRNA-1:exon:3517;Parent=Msa0715520-mRNA-1 |
chr5_1 | five_prime_UTR | 8577979 | 8578364 | 8577979 | ID=Msa0715520-mRNA-1:five_prime_utr;Parent=Msa0715520-mRNA-1 |
chr5_1 | CDS | 8578365 | 8578506 | 8578365 | ID=Msa0715520-mRNA-1:cds;Parent=Msa0715520-mRNA-1 |
chr5_1 | CDS | 8578807 | 8578892 | 8578807 | ID=Msa0715520-mRNA-1:cds;Parent=Msa0715520-mRNA-1 |
Gene Sequence |
Protein sequence |