Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767410 | A0A072VHU7 | 88.462 | 130 | 15 | 0 | 47 | 176 | 1 | 130 | 2.28e-75 | 238 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062170 | Msa0767410 | 0.818939 | 1.508509e-52 | -8.615850e-47 |
| Msa0715520 | Msa0767410 | 0.925565 | 1.545172e-90 | -8.615850e-47 |
| Msa0767410 | Msa0934320 | 0.895268 | 1.126612e-75 | -8.615850e-47 |
| Msa0767410 | Msa1350680 | 0.914851 | 1.179453e-84 | -8.615850e-47 |
| Msa0234270 | Msa0767410 | 0.949332 | 1.575143e-107 | -8.615850e-47 |
| Msa0234320 | Msa0767410 | 0.977775 | 1.846569e-144 | -8.615850e-47 |
| Msa0483040 | Msa0767410 | 0.850465 | 1.669142e-60 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767410 | MtrunA17_Chr1g0206481 | 45.342 | 161 | 87 | 1 | 7 | 167 | 2 | 161 | 1.30e-45 | 152 |
| Msa0767410 | MtrunA17_Chr5g0423441 | 33.540 | 161 | 106 | 1 | 7 | 167 | 2 | 161 | 2.68e-25 | 98.2 |
| Msa0767410 | MtrunA17_Chr5g0411141 | 33.540 | 161 | 106 | 1 | 7 | 167 | 3 | 162 | 5.47e-25 | 98.6 |
| Msa0767410 | MtrunA17_Chr2g0278111 | 33.540 | 161 | 106 | 1 | 7 | 167 | 2 | 161 | 5.68e-25 | 98.6 |
| Msa0767410 | MtrunA17_Chr2g0280031 | 34.228 | 149 | 88 | 2 | 28 | 167 | 4 | 151 | 2.68e-21 | 87.8 |
| Msa0767410 | MtrunA17_Chr5g0421841 | 30.435 | 161 | 110 | 2 | 7 | 167 | 2 | 160 | 1.49e-19 | 82.0 |
| Msa0767410 | MtrunA17_Chr5g0421741 | 33.846 | 130 | 85 | 1 | 7 | 136 | 2 | 130 | 7.96e-19 | 79.3 |
| Msa0767410 | MtrunA17_Chr1g0148711 | 33.846 | 130 | 85 | 1 | 7 | 136 | 2 | 130 | 7.96e-19 | 79.3 |
| Msa0767410 | MtrunA17_Chr7g0259081 | 29.197 | 137 | 95 | 2 | 28 | 163 | 23 | 158 | 1.83e-13 | 65.1 |
| Msa0767410 | MtrunA17_Chr3g0093401 | 28.671 | 143 | 100 | 2 | 7 | 148 | 2 | 143 | 2.62e-12 | 63.2 |
| Msa0767410 | MtrunA17_Chr4g0044661 | 27.536 | 138 | 95 | 3 | 12 | 148 | 13 | 146 | 3.79e-12 | 63.9 |
| Msa0767410 | MtrunA17_Chr2g0309041 | 39.189 | 74 | 44 | 1 | 49 | 122 | 1 | 73 | 8.71e-12 | 58.9 |
| Msa0767410 | MtrunA17_Chr7g0234721 | 27.007 | 137 | 98 | 2 | 28 | 163 | 23 | 158 | 1.45e-11 | 61.2 |
| Msa0767410 | MtrunA17_Chr6g0469811 | 28.829 | 111 | 69 | 2 | 13 | 118 | 17 | 122 | 2.20e-11 | 59.3 |
| Msa0767410 | MtrunA17_Chr6g0469931 | 31.655 | 139 | 84 | 5 | 15 | 148 | 10 | 142 | 4.92e-11 | 60.5 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0767410 | AT2G05642.1 | 26.531 | 98 | 72 | 0 | 24 | 121 | 19 | 116 | 8.51e-11 | 60.5 |
Find 79 sgRNAs with CRISPR-Local
Find 208 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| TAAGATTCAGTTTGTACTTA+TGG | 0.163311 | 5_2:-30478336 | None:intergenic |
| GTTCCTTTCATGAAATTAAT+TGG | 0.178240 | 5_2:-30475659 | None:intergenic |
| ATGAATTGAAAATGTCTCTT+AGG | 0.223571 | 5_2:-30478403 | None:intergenic |
| GCATTTGGTTCCTATATTTA+AGG | 0.232056 | 5_2:+30478234 | Msa0767410:CDS |
| AAGCTTCTCAATAACATAAA+TGG | 0.261519 | 5_2:-30478275 | None:intergenic |
| AGGCCACCATTTGTAGCTTT+TGG | 0.295024 | 5_2:+30476860 | Msa0767410:five_prime_UTR |
| AAGATTCAGTTTGTACTTAT+GGG | 0.314832 | 5_2:-30478335 | None:intergenic |
| CATGTCTTTCCTTGAAATCA+TGG | 0.320102 | 5_2:+30478423 | Msa0767410:CDS |
| AGGGTAGGGTTATCAATCTT+TGG | 0.322960 | 5_2:+30477110 | Msa0767410:CDS |
| TCAAACTGATCCTTAAATAT+AGG | 0.354256 | 5_2:-30478244 | None:intergenic |
| ACCAACAATGTCTGCAAACT+TGG | 0.361386 | 5_2:-30477065 | None:intergenic |
| TCTGCAAACTTGGTGAGCTT+TGG | 0.374688 | 5_2:-30477055 | None:intergenic |
| TTATGTTATTGAGAAGCTTA+TGG | 0.375409 | 5_2:+30478279 | Msa0767410:CDS |
| GTTTCTTACCGATGTGATCT+TGG | 0.404420 | 5_2:+30478762 | Msa0767410:CDS |
| TGTCGCATCCATCACCTTGT+TGG | 0.426183 | 5_2:-30478629 | None:intergenic |
| TGATAACCCTACCCTGGATC+TGG | 0.427073 | 5_2:-30477102 | None:intergenic |
| ATGTCTCTTAGGGATTTCAT+TGG | 0.430665 | 5_2:-30478392 | None:intergenic |
| TCAAGAGATGAAGATTTGTA+TGG | 0.436008 | 5_2:+30475788 | Msa0767410:intron |
| TGAATTGAAAATGTCTCTTA+GGG | 0.436848 | 5_2:-30478402 | None:intergenic |
| TACCGCGGCGGAGGAAGAAA+AGG | 0.449431 | 5_2:-30475697 | None:intergenic |
| CGTTTCAACGCAGCTGAAGC+TGG | 0.450711 | 5_2:+30477145 | Msa0767410:CDS |
| TCAAATCGACGCCGAGAATA+GGG | 0.456796 | 5_2:-30475566 | None:intergenic |
| GTCAAATCGACGCCGAGAAT+AGG | 0.458532 | 5_2:-30475567 | None:intergenic |
| TGTGGCAGGCCATGATTTCA+AGG | 0.458715 | 5_2:-30478432 | None:intergenic |
| CATGAAATTAATTGGACCAA+TGG | 0.459369 | 5_2:-30475651 | None:intergenic |
| TGCAAGTGTCAGGAAGCATT+TGG | 0.459729 | 5_2:+30478219 | Msa0767410:CDS |
| TGACAATCCATGCAAGTGTC+AGG | 0.462004 | 5_2:+30478209 | Msa0767410:CDS |
| TCATACGCCCACCCTATTCT+CGG | 0.466614 | 5_2:+30475555 | Msa0767410:five_prime_UTR |
| TCATGAAAGGAACAACTTTG+TGG | 0.469039 | 5_2:+30475669 | Msa0767410:five_prime_UTR |
| AAACAAACCTTTGGATGCCA+TGG | 0.474075 | 5_2:-30476940 | None:intergenic |
| GGTCCAATTAATTTCATGAA+AGG | 0.475134 | 5_2:+30475656 | Msa0767410:five_prime_UTR |
| TCTCGACGAGGGCTTTCCAT+TGG | 0.475662 | 5_2:+30475635 | Msa0767410:five_prime_UTR |
| CAGCTTCAGCTGCGTTGAAA+CGG | 0.476249 | 5_2:-30477144 | None:intergenic |
| CACAAGGAGGATCGCTTGAT+AGG | 0.477160 | 5_2:+30478451 | Msa0767410:CDS |
| CTATCATCCATGTACTACTT+AGG | 0.480805 | 5_2:+30476659 | Msa0767410:five_prime_UTR |
| AATGCTTCCTGACACTTGCA+TGG | 0.486468 | 5_2:-30478216 | None:intergenic |
| AAGGATTGACTTCCAGATCC+AGG | 0.487161 | 5_2:+30477090 | Msa0767410:CDS |
| TATATTTAAGGATCAGTTTG+AGG | 0.489409 | 5_2:+30478246 | Msa0767410:CDS |
| ACCAAGTTTGCAGACATTGT+TGG | 0.493260 | 5_2:+30477064 | Msa0767410:CDS |
| ATCCTTGAGCTTGAAAATAG+TGG | 0.496930 | 5_2:-30478368 | None:intergenic |
| AAAGCCCCTTACCGCGGCGG+AGG | 0.500473 | 5_2:-30475706 | None:intergenic |
| TCAGCTGCGTTGAAACGGTC+AGG | 0.503479 | 5_2:-30477139 | None:intergenic |
| TTTAAGGATCAGTTTGAGGA+AGG | 0.515351 | 5_2:+30478250 | Msa0767410:CDS |
| TGTTCAAGCACTATAAATAC+AGG | 0.517194 | 5_2:+30476840 | Msa0767410:five_prime_UTR |
| CAAGCGATCCTCCTTGTGGC+AGG | 0.518463 | 5_2:-30478446 | None:intergenic |
| TTGCAGACATTGTTGGTGGA+AGG | 0.522383 | 5_2:+30477071 | Msa0767410:CDS |
| ACCTGCAAATCAAAATCCTC+CGG | 0.522646 | 5_2:-30475847 | None:intergenic |
| TGGGGAGTAGTCTTAAATGT+TGG | 0.525238 | 5_2:-30478316 | None:intergenic |
| GCATGACCAAAAGCTACAAA+TGG | 0.530803 | 5_2:-30476866 | None:intergenic |
| TATTACACTTCTAAATCTTG+TGG | 0.532023 | 5_2:-30478848 | None:intergenic |
| CTCGCCTTGACAGATGTCAT+TGG | 0.539535 | 5_2:+30478556 | Msa0767410:intron |
| GGATGATAGAATAAATTATG+AGG | 0.554822 | 5_2:-30476645 | None:intergenic |
| AGATTCAGTTTGTACTTATG+GGG | 0.556764 | 5_2:-30478334 | None:intergenic |
| AAGTTTGCAGACATTGTTGG+TGG | 0.561560 | 5_2:+30477067 | Msa0767410:CDS |
| TTTCCGATCGGTGCATGTGG+TGG | 0.563662 | 5_2:-30475589 | None:intergenic |
| ATCTGTTCCTAAGTAGTACA+TGG | 0.567551 | 5_2:-30476666 | None:intergenic |
| TACTGCTTAGGAACAGATGC+AGG | 0.569954 | 5_2:+30476609 | Msa0767410:intron |
| TGACCACCACATGCACCGAT+CGG | 0.572463 | 5_2:+30475586 | Msa0767410:five_prime_UTR |
| TTTCTTCATCCTCTCGACGA+GGG | 0.577829 | 5_2:+30475624 | Msa0767410:five_prime_UTR |
| TGACTTCCAGATCCAGGGTA+GGG | 0.580257 | 5_2:+30477096 | Msa0767410:CDS |
| ACCGCGGCGGAGGAAGAAAA+GGG | 0.583013 | 5_2:-30475696 | None:intergenic |
| TACTACTTAGGAACAGATGC+AGG | 0.584018 | 5_2:+30476671 | Msa0767410:five_prime_UTR |
| TTAAGGATCAGTTTGAGGAA+GGG | 0.584089 | 5_2:+30478251 | Msa0767410:CDS |
| TGAAATCATGGCCTGCCACA+AGG | 0.593472 | 5_2:+30478435 | Msa0767410:CDS |
| TTGACTTCCAGATCCAGGGT+AGG | 0.606877 | 5_2:+30477095 | Msa0767410:CDS |
| AACAAATCCATGGCATCCAA+AGG | 0.609245 | 5_2:+30476933 | Msa0767410:exon |
| AATGGAAAGCCCTCGTCGAG+AGG | 0.609814 | 5_2:-30475633 | None:intergenic |
| AGGATTGACTTCCAGATCCA+GGG | 0.616176 | 5_2:+30477091 | Msa0767410:CDS |
| AATCGACGCCGAGAATAGGG+TGG | 0.624759 | 5_2:-30475563 | None:intergenic |
| AAAGATTGATAACCCTACCC+TGG | 0.625407 | 5_2:-30477108 | None:intergenic |
| TGACCAAAAGCTACAAATGG+TGG | 0.631136 | 5_2:-30476863 | None:intergenic |
| ATCGACGCCGAGAATAGGGT+GGG | 0.640118 | 5_2:-30475562 | None:intergenic |
| CTATCAAGCGATCCTCCTTG+TGG | 0.646986 | 5_2:-30478450 | None:intergenic |
| TACAAACTGAATCTTATGAG+AGG | 0.653843 | 5_2:+30478343 | Msa0767410:CDS |
| GGAAAAGCCCCTTACCGCGG+CGG | 0.672531 | 5_2:-30475709 | None:intergenic |
| ACTTCATTCCAAGATCACAT+CGG | 0.710513 | 5_2:-30478770 | None:intergenic |
| AATCATGGCCTGCCACAAGG+AGG | 0.724370 | 5_2:+30478438 | Msa0767410:CDS |
| AAAACGCTCTGCAATTAACG+CGG | 0.726871 | 5_2:-30475823 | None:intergenic |
| AGGGGAAATCGAATTCACTG+CGG | 0.776423 | 5_2:+30478740 | Msa0767410:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTATAAATCTTTCATAATT+TGG | - | chr5_2:30477854-30477873 | None:intergenic | 10.0% |
| !!! | TTTTTAGAAAAAAAATTTGA+TGG | + | chr5_2:30477945-30477964 | Msa0767410:intron | 10.0% |
| !! | ATAAAAATCATAATTATTAG+AGG | - | chr5_2:30477986-30478005 | None:intergenic | 10.0% |
| !!! | TTGATTTTTTTTTATGTTTC+TGG | + | chr5_2:30475984-30476003 | Msa0767410:intron | 15.0% |
| !!! | TGATTTTTTTTTATGTTTCT+GGG | + | chr5_2:30475985-30476004 | Msa0767410:intron | 15.0% |
| !! | CATTTATAAAAGTAATAAAC+TGG | + | chr5_2:30476209-30476228 | Msa0767410:intron | 15.0% |
| !! | TTAGATAAATAAATACATAC+AGG | + | chr5_2:30476304-30476323 | Msa0767410:intron | 15.0% |
| !!! | TATAATTTTAAAGTCATTGA+TGG | + | chr5_2:30477263-30477282 | Msa0767410:intron | 15.0% |
| !!! | ATAATTTTAAAGTCATTGAT+GGG | + | chr5_2:30477264-30477283 | Msa0767410:intron | 15.0% |
| !! | AGATATTTAAGAACAAATAC+TGG | - | chr5_2:30475900-30475919 | None:intergenic | 20.0% |
| !! | GTTCTTAAATATCTCATTAA+TGG | + | chr5_2:30475906-30475925 | Msa0767410:intron | 20.0% |
| !!! | ATATCTCATTAATGGATTAA+TGG | + | chr5_2:30475914-30475933 | Msa0767410:intron | 20.0% |
| !!! | ACATTTTCTTTTTATTCTAG+TGG | - | chr5_2:30476277-30476296 | None:intergenic | 20.0% |
| !! | GATGAATAAAAAATACCAAA+TGG | - | chr5_2:30476396-30476415 | None:intergenic | 20.0% |
| !! | AATATAAAATCCTAAAAGCA+AGG | - | chr5_2:30476461-30476480 | None:intergenic | 20.0% |
| !!! | GATTTTATATTCTTTGCTTT+TGG | + | chr5_2:30476470-30476489 | Msa0767410:intron | 20.0% |
| !!! | TTTTTATTCATCATATGCAT+AGG | + | chr5_2:30476496-30476515 | Msa0767410:intron | 20.0% |
| !! | TATGACAACAAATATGAAAT+TGG | - | chr5_2:30476973-30476992 | None:intergenic | 20.0% |
| !!! | TGTTACCATGTTTTTTTTTT+TGG | + | chr5_2:30477363-30477382 | Msa0767410:intron | 20.0% |
| !!! | AGACTTCATTTTTATTCATT+TGG | + | chr5_2:30477474-30477493 | Msa0767410:intron | 20.0% |
| !! | CAAGTTTAATTAACTAAATC+TGG | - | chr5_2:30478163-30478182 | None:intergenic | 20.0% |
| !!! | ACATTGAATTGTTTTATTCT+AGG | + | chr5_2:30478183-30478202 | Msa0767410:intron | 20.0% |
| !!! | CATTGAATTGTTTTATTCTA+GGG | + | chr5_2:30478184-30478203 | Msa0767410:intron | 20.0% |
| !!! | TGTTTTTGTTTGTTGTTATA+TGG | + | chr5_2:30478494-30478513 | Msa0767410:intron | 20.0% |
| !!! | ATAATCTTACTTTTTCCGAT+CGG | - | chr5_2:30475604-30475623 | None:intergenic | 25.0% |
| ! | GTTCCTTTCATGAAATTAAT+TGG | - | chr5_2:30475662-30475681 | None:intergenic | 25.0% |
| ! | AGAAGAAGAAATACAAAGTA+TGG | - | chr5_2:30475740-30475759 | None:intergenic | 25.0% |
| ! | ATACTTTGTATTTCTTCTTC+TGG | + | chr5_2:30475739-30475758 | Msa0767410:intron | 25.0% |
| !!! | TTATACACTACTTTTTACAC+AGG | + | chr5_2:30476118-30476137 | Msa0767410:intron | 25.0% |
| ! | TTACACAGGAAGAAAAATAA+TGG | + | chr5_2:30476132-30476151 | Msa0767410:intron | 25.0% |
| ! | AAATACATACAGGAGAAAAT+AGG | + | chr5_2:30476314-30476333 | Msa0767410:intron | 25.0% |
| !! | TTTTACTTCATGGATATTTG+TGG | - | chr5_2:30476360-30476379 | None:intergenic | 25.0% |
| ! | GGATGATAGAATAAATTATG+AGG | - | chr5_2:30476648-30476667 | None:intergenic | 25.0% |
| !!! | AATAAGTGTTTTTGAAAGCA+TGG | - | chr5_2:30476742-30476761 | None:intergenic | 25.0% |
| ! | TATCTTCAAAGTAAAGCAAA+AGG | + | chr5_2:30477236-30477255 | Msa0767410:intron | 25.0% |
| !!! | ACCATGTTTTTTTTTTTGGA+AGG | + | chr5_2:30477367-30477386 | Msa0767410:intron | 25.0% |
| ! | TCCTTCCAAAAAAAAAAACA+TGG | - | chr5_2:30477371-30477390 | None:intergenic | 25.0% |
| !! | TATCATATAAAGGTACAACA+TGG | - | chr5_2:30477403-30477422 | None:intergenic | 25.0% |
| !!! | TTTGGTTCTCTAATTTTCTT+TGG | + | chr5_2:30477492-30477511 | Msa0767410:intron | 25.0% |
| !!! | AAAAGTTACTTTTAGCACAT+GGG | + | chr5_2:30477646-30477665 | Msa0767410:intron | 25.0% |
| ! | TGTTGCATAAAGATATAAGA+TGG | + | chr5_2:30477755-30477774 | Msa0767410:intron | 25.0% |
| ! | AGGAGAATTTATGTGAAAAT+TGG | - | chr5_2:30478042-30478061 | None:intergenic | 25.0% |
| !! | TATGAAAAGTTTCTTTTGAC+AGG | - | chr5_2:30478062-30478081 | None:intergenic | 25.0% |
| ! | TCAAACTGATCCTTAAATAT+AGG | - | chr5_2:30478247-30478266 | None:intergenic | 25.0% |
| ! | TATATTTAAGGATCAGTTTG+AGG | + | chr5_2:30478246-30478265 | Msa0767410:CDS | 25.0% |
| ! | AAGCTTCTCAATAACATAAA+TGG | - | chr5_2:30478278-30478297 | None:intergenic | 25.0% |
| ! | TTATGTTATTGAGAAGCTTA+TGG | + | chr5_2:30478279-30478298 | Msa0767410:CDS | 25.0% |
| ! | AAGATTCAGTTTGTACTTAT+GGG | - | chr5_2:30478338-30478357 | None:intergenic | 25.0% |
| ! | TAAGATTCAGTTTGTACTTA+TGG | - | chr5_2:30478339-30478358 | None:intergenic | 25.0% |
| ! | TGAATTGAAAATGTCTCTTA+GGG | - | chr5_2:30478405-30478424 | None:intergenic | 25.0% |
| ! | ATGAATTGAAAATGTCTCTT+AGG | - | chr5_2:30478406-30478425 | None:intergenic | 25.0% |
| ! | TATTACACTTCTAAATCTTG+TGG | - | chr5_2:30478851-30478870 | None:intergenic | 25.0% |
| CATGAAATTAATTGGACCAA+TGG | - | chr5_2:30475654-30475673 | None:intergenic | 30.0% | |
| GGTCCAATTAATTTCATGAA+AGG | + | chr5_2:30475656-30475675 | Msa0767410:five_prime_UTR | 30.0% | |
| AGAAGAAATACAAAGTATGG+TGG | - | chr5_2:30475737-30475756 | None:intergenic | 30.0% | |
| AATCTTCATCTCTTGAAAGT+AGG | - | chr5_2:30475784-30475803 | None:intergenic | 30.0% | |
| TCAAGAGATGAAGATTTGTA+TGG | + | chr5_2:30475788-30475807 | Msa0767410:intron | 30.0% | |
| AACAAATACTGGAAAGTAGA+AGG | - | chr5_2:30475889-30475908 | None:intergenic | 30.0% | |
| !! | TCTCATTAATGGATTAATGG+TGG | + | chr5_2:30475917-30475936 | Msa0767410:intron | 30.0% |
| !! | GGTTGAAATTTGTTATAAGC+TGG | + | chr5_2:30475938-30475957 | Msa0767410:intron | 30.0% |
| AAGAGTTGGAAGAACAATAA+TGG | + | chr5_2:30476064-30476083 | Msa0767410:intron | 30.0% | |
| AAAATCCTAAAAGCAAGGAA+AGG | - | chr5_2:30476456-30476475 | None:intergenic | 30.0% | |
| ATATGCATAGAAACAAATGC+AGG | + | chr5_2:30476547-30476566 | Msa0767410:intron | 30.0% | |
| ! | AATTTCATGCGCTTTTCTTA+TGG | + | chr5_2:30476712-30476731 | Msa0767410:five_prime_UTR | 30.0% |
| TGTTCAAGCACTATAAATAC+AGG | + | chr5_2:30476840-30476859 | Msa0767410:five_prime_UTR | 30.0% | |
| GGAATTAAGAAACAAACCTT+TGG | - | chr5_2:30476952-30476971 | None:intergenic | 30.0% | |
| ! | GAATATGTAAGAGTGTGAAA+GGG | + | chr5_2:30477286-30477305 | Msa0767410:intron | 30.0% |
| TGTGCTTCTGTATCATATAA+AGG | - | chr5_2:30477413-30477432 | None:intergenic | 30.0% | |
| AGCACACAAATTCAACAAAT+TGG | + | chr5_2:30477427-30477446 | Msa0767410:intron | 30.0% | |
| AATCTCATCATAGAATTGAC+AGG | - | chr5_2:30477570-30477589 | None:intergenic | 30.0% | |
| !!! | GAAAAGTTACTTTTAGCACA+TGG | + | chr5_2:30477645-30477664 | Msa0767410:intron | 30.0% |
| !!! | AAAGTTACTTTTAGCACATG+GGG | + | chr5_2:30477647-30477666 | Msa0767410:intron | 30.0% |
| TAAGCATGAAGCATGAAAAT+TGG | + | chr5_2:30477723-30477742 | Msa0767410:intron | 30.0% | |
| ! | ATTATTTTCAACTCAGTAGC+AGG | - | chr5_2:30477883-30477902 | None:intergenic | 30.0% |
| ! | TGATTTTTATACCAAAGCTG+TGG | + | chr5_2:30477996-30478015 | Msa0767410:intron | 30.0% |
| ! | GCATTTGGTTCCTATATTTA+AGG | + | chr5_2:30478234-30478253 | Msa0767410:CDS | 30.0% |
| AGATTCAGTTTGTACTTATG+GGG | - | chr5_2:30478337-30478356 | None:intergenic | 30.0% | |
| TACAAACTGAATCTTATGAG+AGG | + | chr5_2:30478343-30478362 | Msa0767410:CDS | 30.0% | |
| TGAAAGTGACTGAGAAAAAT+GGG | + | chr5_2:30478602-30478621 | Msa0767410:CDS | 30.0% | |
| ! | TATGTAATGATCTTTTGCTG+CGG | + | chr5_2:30478695-30478714 | Msa0767410:intron | 30.0% |
| ! | ATGATTTTGCTGGATTTTGC+TGG | - | chr5_2:30475539-30475558 | None:intergenic | 35.0% |
| TCATGAAAGGAACAACTTTG+TGG | + | chr5_2:30475669-30475688 | Msa0767410:five_prime_UTR | 35.0% | |
| !! | CTTCTGGTTTAGATTTGAAG+TGG | + | chr5_2:30475755-30475774 | Msa0767410:intron | 35.0% |
| !! | TTAATTGCAGAGCGTTTTTC+CGG | + | chr5_2:30475828-30475847 | Msa0767410:five_prime_UTR | 35.0% |
| !!! | GGATTTTGATTTGCAGGTTT+TGG | + | chr5_2:30475852-30475871 | Msa0767410:intron | 35.0% |
| TTTCTGCAAAATGAGGAAGA+TGG | + | chr5_2:30476009-30476028 | Msa0767410:intron | 35.0% | |
| ACTCTTTCTCTAACCATCAA+AGG | - | chr5_2:30476050-30476069 | None:intergenic | 35.0% | |
| ! | TTGATGGTTAGAGAAAGAGT+TGG | + | chr5_2:30476050-30476069 | Msa0767410:intron | 35.0% |
| ! | CACTCTAACGTTTTACTTCA+TGG | - | chr5_2:30476370-30476389 | None:intergenic | 35.0% |
| AACGTTAGAGTGATACCATT+TGG | + | chr5_2:30476378-30476397 | Msa0767410:intron | 35.0% | |
| CTATCATCCATGTACTACTT+AGG | + | chr5_2:30476659-30476678 | Msa0767410:five_prime_UTR | 35.0% | |
| ATCTGTTCCTAAGTAGTACA+TGG | - | chr5_2:30476669-30476688 | None:intergenic | 35.0% | |
| ACAATAGCGCATGAAATTCT+TGG | - | chr5_2:30476796-30476815 | None:intergenic | 35.0% | |
| ! | GTTTTGCTGAAACAAATCCA+TGG | + | chr5_2:30476923-30476942 | Msa0767410:exon | 35.0% |
| TAACCAGTTCTTTCTAATGC+AGG | + | chr5_2:30477025-30477044 | Msa0767410:intron | 35.0% | |
| TTTCCTGCATTAGAAAGAAC+TGG | - | chr5_2:30477031-30477050 | None:intergenic | 35.0% | |
| ! | AAGTATGCACATGATTTTGC+TGG | + | chr5_2:30477168-30477187 | Msa0767410:CDS | 35.0% |
| ! | CATGATTTTGCTGGATAATC+AGG | + | chr5_2:30477177-30477196 | Msa0767410:CDS | 35.0% |
| ! | GGAATATGTAAGAGTGTGAA+AGG | + | chr5_2:30477285-30477304 | Msa0767410:intron | 35.0% |
| AAAAAGAGACAAAGACAGCA+AGG | - | chr5_2:30477801-30477820 | None:intergenic | 35.0% | |
| AATCATTCAAACCACAGCTT+TGG | - | chr5_2:30478010-30478029 | None:intergenic | 35.0% | |
| TTTAAGGATCAGTTTGAGGA+AGG | + | chr5_2:30478250-30478269 | Msa0767410:CDS | 35.0% | |
| TTAAGGATCAGTTTGAGGAA+GGG | + | chr5_2:30478251-30478270 | Msa0767410:CDS | 35.0% | |
| !! | TACCACTATTTTCAAGCTCA+AGG | + | chr5_2:30478366-30478385 | Msa0767410:CDS | 35.0% |
| ATCCTTGAGCTTGAAAATAG+TGG | - | chr5_2:30478371-30478390 | None:intergenic | 35.0% | |
| ATGTCTCTTAGGGATTTCAT+TGG | - | chr5_2:30478395-30478414 | None:intergenic | 35.0% | |
| CATGTCTTTCCTTGAAATCA+TGG | + | chr5_2:30478423-30478442 | Msa0767410:CDS | 35.0% | |
| GTCAGTGCTTTAGTAATTAC+AGG | - | chr5_2:30478532-30478551 | None:intergenic | 35.0% | |
| CTGAAAGTGACTGAGAAAAA+TGG | + | chr5_2:30478601-30478620 | Msa0767410:CDS | 35.0% | |
| ACTTCATTCCAAGATCACAT+CGG | - | chr5_2:30478773-30478792 | None:intergenic | 35.0% | |
| TGAAAAAAGAAGAAGCTGCG+AGG | - | chr5_2:30475488-30475507 | None:intergenic | 40.0% | |
| GAAATACAAAGTATGGTGGC+CGG | - | chr5_2:30475733-30475752 | None:intergenic | 40.0% | |
| AAAACGCTCTGCAATTAACG+CGG | - | chr5_2:30475826-30475845 | None:intergenic | 40.0% | |
| ACCTGCAAATCAAAATCCTC+CGG | - | chr5_2:30475850-30475869 | None:intergenic | 40.0% | |
| ! | TCTGGGTTTTCTGCAAAATG+AGG | + | chr5_2:30476002-30476021 | Msa0767410:intron | 40.0% |
| CAAAATGAGGAAGATGGTGA+TGG | + | chr5_2:30476015-30476034 | Msa0767410:intron | 40.0% | |
| !! | ATGGTGTTGATTGCCTTTGA+TGG | + | chr5_2:30476034-30476053 | Msa0767410:intron | 40.0% |
| AAAAGCAAGGAAAGGAGGTA+TGG | - | chr5_2:30476448-30476467 | None:intergenic | 40.0% | |
| !! | TACCTCCTTTCCTTGCTTTT+AGG | + | chr5_2:30476448-30476467 | Msa0767410:intron | 40.0% |
| ATCCTAAAAGCAAGGAAAGG+AGG | - | chr5_2:30476453-30476472 | None:intergenic | 40.0% | |
| ATATGCATAGGAACAGATGC+AGG | + | chr5_2:30476508-30476527 | Msa0767410:intron | 40.0% | |
| TCTGTTCCTAAGCAGTACAT+GGG | - | chr5_2:30476606-30476625 | None:intergenic | 40.0% | |
| ATCTGTTCCTAAGCAGTACA+TGG | - | chr5_2:30476607-30476626 | None:intergenic | 40.0% | |
| TACTACTTAGGAACAGATGC+AGG | + | chr5_2:30476671-30476690 | Msa0767410:five_prime_UTR | 40.0% | |
| AATTCTTGGAGGTTGAGTAC+AGG | - | chr5_2:30476782-30476801 | None:intergenic | 40.0% | |
| ATAGCGCATGAAATTCTTGG+AGG | - | chr5_2:30476793-30476812 | None:intergenic | 40.0% | |
| TGACCAAAAGCTACAAATGG+TGG | - | chr5_2:30476866-30476885 | None:intergenic | 40.0% | |
| GCATGACCAAAAGCTACAAA+TGG | - | chr5_2:30476869-30476888 | None:intergenic | 40.0% | |
| AACAAATCCATGGCATCCAA+AGG | + | chr5_2:30476933-30476952 | Msa0767410:exon | 40.0% | |
| AAACAAACCTTTGGATGCCA+TGG | - | chr5_2:30476943-30476962 | None:intergenic | 40.0% | |
| ACCAAGTTTGCAGACATTGT+TGG | + | chr5_2:30477064-30477083 | Msa0767410:CDS | 40.0% | |
| ACCAACAATGTCTGCAAACT+TGG | - | chr5_2:30477068-30477087 | None:intergenic | 40.0% | |
| AAGTTTGCAGACATTGTTGG+TGG | + | chr5_2:30477067-30477086 | Msa0767410:CDS | 40.0% | |
| ! | AAAGATTGATAACCCTACCC+TGG | - | chr5_2:30477111-30477130 | None:intergenic | 40.0% |
| AGGGTAGGGTTATCAATCTT+TGG | + | chr5_2:30477110-30477129 | Msa0767410:CDS | 40.0% | |
| TACCTTACACATGCTGATCA+GGG | + | chr5_2:30477326-30477345 | Msa0767410:intron | 40.0% | |
| ! | TGGGGAGTAGTCTTAAATGT+TGG | - | chr5_2:30478319-30478338 | None:intergenic | 40.0% |
| ATGACCAATGACATCTGTCA+AGG | - | chr5_2:30478563-30478582 | None:intergenic | 40.0% | |
| GAAAAATGGGAAGACCAACA+AGG | + | chr5_2:30478615-30478634 | Msa0767410:CDS | 40.0% | |
| TCTTATGTGTGTTGTGTTGC+AGG | + | chr5_2:30478720-30478739 | Msa0767410:intron | 40.0% | |
| CTTATGTGTGTTGTGTTGCA+GGG | + | chr5_2:30478721-30478740 | Msa0767410:intron | 40.0% | |
| TTATGTGTGTTGTGTTGCAG+GGG | + | chr5_2:30478722-30478741 | Msa0767410:intron | 40.0% | |
| GTTTCTTACCGATGTGATCT+TGG | + | chr5_2:30478762-30478781 | Msa0767410:CDS | 40.0% | |
| TCAAATCGACGCCGAGAATA+GGG | - | chr5_2:30475569-30475588 | None:intergenic | 45.0% | |
| ! | TTTTCTTCATCCTCTCGACG+AGG | + | chr5_2:30475623-30475642 | Msa0767410:five_prime_UTR | 45.0% |
| TTTCTTCATCCTCTCGACGA+GGG | + | chr5_2:30475624-30475643 | Msa0767410:five_prime_UTR | 45.0% | |
| !!! | TCCGGAGGATTTTGATTTGC+AGG | + | chr5_2:30475846-30475865 | Msa0767410:five_prime_UTR | 45.0% |
| CATAGAAACAAATGCAGGCG+TGG | + | chr5_2:30476552-30476571 | Msa0767410:intron | 45.0% | |
| CTATCACCCATGTACTGCTT+AGG | + | chr5_2:30476597-30476616 | Msa0767410:intron | 45.0% | |
| TACTGCTTAGGAACAGATGC+AGG | + | chr5_2:30476609-30476628 | Msa0767410:intron | 45.0% | |
| TGAGTACAGGAATGGTTGAC+AGG | - | chr5_2:30476769-30476788 | None:intergenic | 45.0% | |
| TTGGAGGTTGAGTACAGGAA+TGG | - | chr5_2:30476777-30476796 | None:intergenic | 45.0% | |
| ! | AGGCCACCATTTGTAGCTTT+TGG | + | chr5_2:30476860-30476879 | Msa0767410:five_prime_UTR | 45.0% |
| ! | TCTGCAAACTTGGTGAGCTT+TGG | - | chr5_2:30477058-30477077 | None:intergenic | 45.0% |
| ! | TTGCAGACATTGTTGGTGGA+AGG | + | chr5_2:30477071-30477090 | Msa0767410:CDS | 45.0% |
| ! | AAGGATTGACTTCCAGATCC+AGG | + | chr5_2:30477090-30477109 | Msa0767410:CDS | 45.0% |
| ! | AGGATTGACTTCCAGATCCA+GGG | + | chr5_2:30477091-30477110 | Msa0767410:CDS | 45.0% |
| CTACCTTACACATGCTGATC+AGG | + | chr5_2:30477325-30477344 | Msa0767410:intron | 45.0% | |
| ACCTTACACATGCTGATCAG+GGG | + | chr5_2:30477327-30477346 | Msa0767410:intron | 45.0% | |
| ! | ACATGCTGATCAGGGGTATA+AGG | + | chr5_2:30477334-30477353 | Msa0767410:intron | 45.0% |
| TGACAATCCATGCAAGTGTC+AGG | + | chr5_2:30478209-30478228 | Msa0767410:CDS | 45.0% | |
| AATGCTTCCTGACACTTGCA+TGG | - | chr5_2:30478219-30478238 | None:intergenic | 45.0% | |
| !! | TGCAAGTGTCAGGAAGCATT+TGG | + | chr5_2:30478219-30478238 | Msa0767410:CDS | 45.0% |
| AGGGGAAATCGAATTCACTG+CGG | + | chr5_2:30478740-30478759 | Msa0767410:intron | 45.0% | |
| !! | ATTATTAAAAAAAAATATGA+TGG | + | chr5_2:30477825-30477844 | Msa0767410:intron | 5.0% |
| TCATACGCCCACCCTATTCT+CGG | + | chr5_2:30475555-30475574 | Msa0767410:five_prime_UTR | 50.0% | |
| GTCAAATCGACGCCGAGAAT+AGG | - | chr5_2:30475570-30475589 | None:intergenic | 50.0% | |
| ! | CTTTTTCCGATCGGTGCATG+TGG | - | chr5_2:30475595-30475614 | None:intergenic | 50.0% |
| !! | ATTGCAGAGCGTTTTTCCGG+AGG | + | chr5_2:30475831-30475850 | Msa0767410:five_prime_UTR | 50.0% |
| CATAGGAACAGATGCAGGCA+TGG | + | chr5_2:30476513-30476532 | Msa0767410:intron | 50.0% | |
| TTGACTTCCAGATCCAGGGT+AGG | + | chr5_2:30477095-30477114 | Msa0767410:CDS | 50.0% | |
| TGACTTCCAGATCCAGGGTA+GGG | + | chr5_2:30477096-30477115 | Msa0767410:CDS | 50.0% | |
| TGATAACCCTACCCTGGATC+TGG | - | chr5_2:30477105-30477124 | None:intergenic | 50.0% | |
| CAGCTTCAGCTGCGTTGAAA+CGG | - | chr5_2:30477147-30477166 | None:intergenic | 50.0% | |
| ACCCCTGATCAGCATGTGTA+AGG | - | chr5_2:30477331-30477350 | None:intergenic | 50.0% | |
| GCACATGGGGTAGCAAGAAA+AGG | + | chr5_2:30477660-30477679 | Msa0767410:intron | 50.0% | |
| TGTGGCAGGCCATGATTTCA+AGG | - | chr5_2:30478435-30478454 | None:intergenic | 50.0% | |
| TGAAATCATGGCCTGCCACA+AGG | + | chr5_2:30478435-30478454 | Msa0767410:CDS | 50.0% | |
| CTATCAAGCGATCCTCCTTG+TGG | - | chr5_2:30478453-30478472 | None:intergenic | 50.0% | |
| CACAAGGAGGATCGCTTGAT+AGG | + | chr5_2:30478451-30478470 | Msa0767410:CDS | 50.0% | |
| CAATGACATCTGTCAAGGCG+AGG | - | chr5_2:30478558-30478577 | None:intergenic | 50.0% | |
| CTCGCCTTGACAGATGTCAT+TGG | + | chr5_2:30478556-30478575 | Msa0767410:intron | 50.0% | |
| TGGGAAGACCAACAAGGTGA+TGG | + | chr5_2:30478621-30478640 | Msa0767410:intron | 50.0% | |
| TGTCGCATCCATCACCTTGT+TGG | - | chr5_2:30478632-30478651 | None:intergenic | 50.0% | |
| !! | CAAGGTGATGGATGCGACAT+TGG | + | chr5_2:30478633-30478652 | Msa0767410:intron | 50.0% |
| GGATGCGACATTGGAGGATT+TGG | + | chr5_2:30478642-30478661 | Msa0767410:intron | 50.0% | |
| ! | GGGTGGGCGTATGATTTTGC+TGG | - | chr5_2:30475549-30475568 | None:intergenic | 55.0% |
| ATCGACGCCGAGAATAGGGT+GGG | - | chr5_2:30475565-30475584 | None:intergenic | 55.0% | |
| AATCGACGCCGAGAATAGGG+TGG | - | chr5_2:30475566-30475585 | None:intergenic | 55.0% | |
| ! | TGACCACCACATGCACCGAT+CGG | + | chr5_2:30475586-30475605 | Msa0767410:five_prime_UTR | 55.0% |
| TTTCCGATCGGTGCATGTGG+TGG | - | chr5_2:30475592-30475611 | None:intergenic | 55.0% | |
| AATGGAAAGCCCTCGTCGAG+AGG | - | chr5_2:30475636-30475655 | None:intergenic | 55.0% | |
| TCTCGACGAGGGCTTTCCAT+TGG | + | chr5_2:30475635-30475654 | Msa0767410:five_prime_UTR | 55.0% | |
| TCAGCTGCGTTGAAACGGTC+AGG | - | chr5_2:30477142-30477161 | None:intergenic | 55.0% | |
| CGTTTCAACGCAGCTGAAGC+TGG | + | chr5_2:30477145-30477164 | Msa0767410:CDS | 55.0% | |
| AATCATGGCCTGCCACAAGG+AGG | + | chr5_2:30478438-30478457 | Msa0767410:CDS | 55.0% | |
| !! | GGTGATGGATGCGACATTGG+AGG | + | chr5_2:30478636-30478655 | Msa0767410:intron | 55.0% |
| ! | ACCCTTTTCTTCCTCCGCCG+CGG | + | chr5_2:30475695-30475714 | Msa0767410:five_prime_UTR | 60.0% |
| ACCGCGGCGGAGGAAGAAAA+GGG | - | chr5_2:30475699-30475718 | None:intergenic | 60.0% | |
| TACCGCGGCGGAGGAAGAAA+AGG | - | chr5_2:30475700-30475719 | None:intergenic | 60.0% | |
| TTTCTTCCTCCGCCGCGGTA+AGG | + | chr5_2:30475700-30475719 | Msa0767410:intron | 60.0% | |
| TTCTTCCTCCGCCGCGGTAA+GGG | + | chr5_2:30475701-30475720 | Msa0767410:intron | 60.0% | |
| CAAGCGATCCTCCTTGTGGC+AGG | - | chr5_2:30478449-30478468 | None:intergenic | 60.0% | |
| TCTTCCTCCGCCGCGGTAAG+GGG | + | chr5_2:30475702-30475721 | Msa0767410:intron | 65.0% | |
| GGAAAAGCCCCTTACCGCGG+CGG | - | chr5_2:30475712-30475731 | None:intergenic | 65.0% | |
| ! | GCCGCGGTAAGGGGCTTTTC+CGG | + | chr5_2:30475711-30475730 | Msa0767410:intron | 65.0% |
| GCCGGAAAAGCCCCTTACCG+CGG | - | chr5_2:30475715-30475734 | None:intergenic | 65.0% | |
| AAAGCCCCTTACCGCGGCGG+AGG | - | chr5_2:30475709-30475728 | None:intergenic | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 30475477 | 30478872 | 30475477 | ID=Msa0767410;Name=Msa0767410 |
| chr5_2 | mRNA | 30475477 | 30478872 | 30475477 | ID=Msa0767410-mRNA-1;Parent=Msa0767410;Name=Msa0767410-mRNA-1;_AED=0.26;_eAED=0.26;_QI=528|0.85|0.87|1|0.57|0.5|8|83|182 |
| chr5_2 | exon | 30475477 | 30475716 | 30475477 | ID=Msa0767410-mRNA-1:exon:11476;Parent=Msa0767410-mRNA-1 |
| chr5_2 | exon | 30475801 | 30475867 | 30475801 | ID=Msa0767410-mRNA-1:exon:11477;Parent=Msa0767410-mRNA-1 |
| chr5_2 | exon | 30476619 | 30476733 | 30476619 | ID=Msa0767410-mRNA-1:exon:11478;Parent=Msa0767410-mRNA-1 |
| chr5_2 | exon | 30476836 | 30476954 | 30476836 | ID=Msa0767410-mRNA-1:exon:11479;Parent=Msa0767410-mRNA-1 |
| chr5_2 | exon | 30477047 | 30477198 | 30477047 | ID=Msa0767410-mRNA-1:exon:11480;Parent=Msa0767410-mRNA-1 |
| chr5_2 | exon | 30478205 | 30478472 | 30478205 | ID=Msa0767410-mRNA-1:exon:11481;Parent=Msa0767410-mRNA-1 |
| chr5_2 | exon | 30478569 | 30478636 | 30478569 | ID=Msa0767410-mRNA-1:exon:11482;Parent=Msa0767410-mRNA-1 |
| chr5_2 | exon | 30478742 | 30478872 | 30478742 | ID=Msa0767410-mRNA-1:exon:11483;Parent=Msa0767410-mRNA-1 |
| chr5_2 | five_prime_UTR | 30475477 | 30475716 | 30475477 | ID=Msa0767410-mRNA-1:five_prime_utr;Parent=Msa0767410-mRNA-1 |
| chr5_2 | five_prime_UTR | 30475801 | 30475867 | 30475801 | ID=Msa0767410-mRNA-1:five_prime_utr;Parent=Msa0767410-mRNA-1 |
| chr5_2 | five_prime_UTR | 30476619 | 30476733 | 30476619 | ID=Msa0767410-mRNA-1:five_prime_utr;Parent=Msa0767410-mRNA-1 |
| chr5_2 | five_prime_UTR | 30476836 | 30476941 | 30476836 | ID=Msa0767410-mRNA-1:five_prime_utr;Parent=Msa0767410-mRNA-1 |
| chr5_2 | CDS | 30476942 | 30476954 | 30476942 | ID=Msa0767410-mRNA-1:cds;Parent=Msa0767410-mRNA-1 |
| chr5_2 | CDS | 30477047 | 30477198 | 30477047 | ID=Msa0767410-mRNA-1:cds;Parent=Msa0767410-mRNA-1 |
| chr5_2 | CDS | 30478205 | 30478472 | 30478205 | ID=Msa0767410-mRNA-1:cds;Parent=Msa0767410-mRNA-1 |
| chr5_2 | CDS | 30478569 | 30478636 | 30478569 | ID=Msa0767410-mRNA-1:cds;Parent=Msa0767410-mRNA-1 |
| chr5_2 | CDS | 30478742 | 30478789 | 30478742 | ID=Msa0767410-mRNA-1:cds;Parent=Msa0767410-mRNA-1 |
| chr5_2 | three_prime_UTR | 30478790 | 30478872 | 30478790 | ID=Msa0767410-mRNA-1:three_prime_utr;Parent=Msa0767410-mRNA-1 |
| Gene Sequence |
| Protein sequence |
