Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062170 | Msa0934320 | 0.832900 | 7.260021e-56 | -8.615850e-47 |
| Msa0715520 | Msa0934320 | 0.936047 | 3.240645e-97 | -8.615850e-47 |
| Msa0767410 | Msa0934320 | 0.895268 | 1.126612e-75 | -8.615850e-47 |
| Msa0234270 | Msa0934320 | 0.887725 | 1.108299e-72 | -8.615850e-47 |
| Msa0234320 | Msa0934320 | 0.901017 | 4.098645e-78 | -8.615850e-47 |
| Msa0483040 | Msa0934320 | 0.913101 | 9.083061e-84 | -8.615850e-47 |
| Msa0934320 | Msa1350680 | 0.912209 | 2.531723e-83 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 57 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTGTCATGAACAATTTA+TGG | 0.154443 | 6_3:-4108709 | Msa0934320:CDS |
| CTGATAGAAACTTTAATTAA+AGG | 0.206177 | 6_3:+4108471 | Msa0934310:intron |
| TGTGAAGGGAAAATTGAAAA+TGG | 0.224177 | 6_3:+4112226 | Msa0934310:intron |
| GAAGTTCTCCTTCAAAGTTT+TGG | 0.321181 | 6_3:-4111631 | Msa0934320:CDS |
| CACAATCAGATTCAACAAAA+AGG | 0.337028 | 6_3:+4112098 | Msa0934310:intron |
| CATGTGTATTCCATATAGTA+TGG | 0.342014 | 6_3:-4108610 | Msa0934320:CDS |
| GTAGTGATTGCCATACTATA+TGG | 0.348814 | 6_3:+4108600 | Msa0934310:intron |
| ATTTATATATCGCTGATGAT+AGG | 0.366047 | 6_3:+4108415 | Msa0934310:intron |
| TAACTGCAGAAGCTTGGTTC+TGG | 0.371129 | 6_3:-4111811 | Msa0934320:five_prime_UTR |
| CATGGTTTAATTTAATGTAA+TGG | 0.394502 | 6_3:-4108541 | Msa0934320:three_prime_UTR |
| ATTAAACCTTTACTATTACA+TGG | 0.417083 | 6_3:+4108503 | Msa0934310:intron |
| CATGATCAAACGTGTGTTTG+TGG | 0.422325 | 6_3:+4111761 | Msa0934310:intron |
| CAAAACCGTAAAAGAGAGAG+AGG | 0.424602 | 6_3:+4112192 | Msa0934310:intron |
| AAAAGAGAGAGAGGGAGCTT+AGG | 0.449508 | 6_3:+4112201 | Msa0934310:intron |
| CACAAACACACGTTTGATCA+TGG | 0.456727 | 6_3:-4111760 | Msa0934320:exon |
| GTGAAGGGAAAATTGAAAAT+GGG | 0.459730 | 6_3:+4112227 | Msa0934310:intron |
| TTCTCTTTGGCAGAAGTTGG+TGG | 0.462869 | 6_3:-4111370 | Msa0934320:intron |
| GAGGGAGCTTAGGTTTGTGA+AGG | 0.467345 | 6_3:+4112211 | Msa0934310:intron |
| CAAATATTGCATTGAGCCCA+TGG | 0.469774 | 6_3:-4108559 | Msa0934320:three_prime_UTR |
| ATGGAAATACGCTACCAAAC+AGG | 0.473396 | 6_3:-4111741 | Msa0934320:intron |
| GGAAGAAGAAGATAATAGTA+AGG | 0.475273 | 6_3:+4112439 | Msa0934310:intron |
| CATGAACAATTTATGGTGAA+TGG | 0.476213 | 6_3:-4108702 | Msa0934320:CDS |
| GAGGTGGCAACTGCAACAAC+TGG | 0.477158 | 6_3:-4112003 | Msa0934320:intron |
| TTAAACCTTTACTATTACAT+GGG | 0.481621 | 6_3:+4108504 | Msa0934310:intron |
| CCAAGCTTCTGCAGTTAACA+TGG | 0.483604 | 6_3:+4111817 | Msa0934310:intron |
| AGAAGATAATAGTAAGGCAG+AGG | 0.485632 | 6_3:+4112445 | Msa0934310:intron |
| TTTGTTGAATCTGATTGTGC+AGG | 0.486427 | 6_3:-4112094 | Msa0934320:five_prime_UTR |
| ATTCAAGGAATGGGTCGGTT+GGG | 0.489585 | 6_3:-4112064 | Msa0934320:five_prime_UTR |
| ACGCTGGGAGATGGTGGATC+AGG | 0.490895 | 6_3:-4112031 | Msa0934320:five_prime_UTR |
| GATGGTGGATCAGGACTTAG+AGG | 0.492687 | 6_3:-4112022 | Msa0934320:five_prime_UTR |
| GGGAAATGAGTGGAAGGAGG+TGG | 0.497421 | 6_3:+4112418 | Msa0934310:intron |
| GAAGGAACAACGCTGGGAGA+TGG | 0.499001 | 6_3:-4112040 | Msa0934320:five_prime_UTR |
| AAACAAAGGACATACCTGTT+TGG | 0.500908 | 6_3:+4111727 | Msa0934310:intron |
| CCATGTTAACTGCAGAAGCT+TGG | 0.501911 | 6_3:-4111817 | Msa0934320:five_prime_UTR |
| TGTGCAGGTTGTCAGATTCA+AGG | 0.512612 | 6_3:-4112079 | Msa0934320:five_prime_UTR |
| AGGGAGCTTAGGTTTGTGAA+GGG | 0.520034 | 6_3:+4112212 | Msa0934310:intron |
| GATTCAAGGAATGGGTCGGT+TGG | 0.520448 | 6_3:-4112065 | Msa0934320:five_prime_UTR |
| CATTACATTAAATTAAACCA+TGG | 0.529688 | 6_3:+4108542 | Msa0934310:intron |
| GGTTGTCAGATTCAAGGAAT+GGG | 0.533310 | 6_3:-4112073 | Msa0934320:five_prime_UTR |
| AGGTTGTCAGATTCAAGGAA+TGG | 0.541574 | 6_3:-4112074 | Msa0934320:five_prime_UTR |
| GGAATGGGTCGGTTGGGAGA+AGG | 0.541805 | 6_3:-4112058 | Msa0934320:five_prime_UTR |
| ATCAAACGTGTGTTTGTGGA+TGG | 0.552470 | 6_3:+4111765 | Msa0934310:intron |
| ATTACATTAAATTAAACCAT+GGG | 0.556482 | 6_3:+4108543 | Msa0934310:intron |
| GGAACAACGCTGGGAGATGG+TGG | 0.563155 | 6_3:-4112037 | Msa0934320:five_prime_UTR |
| TTGGGAGAAGGAACAACGCT+GGG | 0.568199 | 6_3:-4112046 | Msa0934320:five_prime_UTR |
| CAGTGTGTTTATCAATTCTG+TGG | 0.570105 | 6_3:-4111847 | Msa0934320:five_prime_UTR |
| CAATGAGACAAACATACGCT+TGG | 0.574216 | 6_3:+4108347 | Msa0934310:intron |
| GTCAGATTCAAGGAATGGGT+CGG | 0.597985 | 6_3:-4112069 | Msa0934320:five_prime_UTR |
| TTATGACAAATTGAAATCCA+AGG | 0.605167 | 6_3:+4112280 | Msa0934310:intron |
| AAAGATGAAAGAAATTGTGG+AGG | 0.617363 | 6_3:+4112385 | Msa0934310:intron |
| GTTGGGAGAAGGAACAACGC+TGG | 0.636641 | 6_3:-4112047 | Msa0934320:five_prime_UTR |
| AAAACCGTAAAAGAGAGAGA+GGG | 0.637385 | 6_3:+4112193 | Msa0934310:intron |
| AAACAACTCAGGTCTAGAGA+TGG | 0.655516 | 6_3:-4108667 | Msa0934320:CDS |
| GATGGTGCAACTATCAAACT+CGG | 0.656220 | 6_3:-4108649 | Msa0934320:CDS |
| GAAAGCTCTACAAACAACTC+AGG | 0.657413 | 6_3:-4108678 | Msa0934320:CDS |
| GGTGGATCAGGACTTAGAGG+TGG | 0.682012 | 6_3:-4112019 | Msa0934320:five_prime_UTR |
| GGTGCAACTATCAAACTCGG+TGG | 0.708116 | 6_3:-4108646 | Msa0934320:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGCATTTAAAAATAAATAT+GGG | + | chr6_3:4109407-4109426 | Msa0934310:intron | 10.0% |
| !! | TTTGCATTTAAAAATAAATA+TGG | + | chr6_3:4109408-4109427 | Msa0934310:intron | 10.0% |
| !! | TATATTTATTAATTCATATG+TGG | - | chr6_3:4110180-4110199 | Msa0934320:intron | 10.0% |
| !!! | ATTATTTAAGTTTATATAAG+TGG | + | chr6_3:4111594-4111613 | Msa0934310:intron | 10.0% |
| !!! | TTTCAATTTATTTTTCTCTT+TGG | - | chr6_3:4109430-4109449 | Msa0934320:intron | 15.0% |
| !! | AAGTTTGTATTCTAATTATT+TGG | - | chr6_3:4109668-4109687 | Msa0934320:intron | 15.0% |
| !!! | TAATTATCACAATTTTTCTA+TGG | + | chr6_3:4110162-4110181 | Msa0934310:intron | 15.0% |
| !!! | GTAGTTTAATCAAAATTTTA+AGG | + | chr6_3:4110278-4110297 | Msa0934310:intron | 15.0% |
| !!! | TTTCTTCAAATTTGATAATT+TGG | - | chr6_3:4110441-4110460 | Msa0934320:intron | 15.0% |
| !!! | CATGGTTTAATAAATTTTTT+TGG | - | chr6_3:4110471-4110490 | Msa0934320:intron | 15.0% |
| !! | ATGAATAAAAAAATACCAAA+AGG | + | chr6_3:4110611-4110630 | Msa0934310:intron | 15.0% |
| !! | TTTCAACAATAAAAAATAGA+AGG | + | chr6_3:4111060-4111079 | Msa0934310:intron | 15.0% |
| !!! | TTTTATTTTTCATGACTTTT+TGG | - | chr6_3:4111745-4111764 | Msa0934320:exon | 15.0% |
| !!! | ATAAATAATGTTGATTTCTT+GGG | - | chr6_3:4112040-4112059 | Msa0934320:five_prime_UTR | 15.0% |
| !! | ATTACATTAAATTAAACCAT+GGG | + | chr6_3:4112273-4112292 | Msa0934310:intron | 15.0% |
| !!! | ATAGTAAAGGTTTAATTTTA+TGG | - | chr6_3:4112317-4112336 | Msa0934320:five_prime_UTR | 15.0% |
| !!! | TTGGATACGTTTTTTATTTT+GGG | + | chr6_3:4108855-4108874 | Msa0934310:intron | 20.0% |
| !! | CAATATAATAAAGAAAGTGA+TGG | + | chr6_3:4109908-4109927 | Msa0934310:intron | 20.0% |
| !!! | TTTTTTATTTCCAATGATAG+TGG | - | chr6_3:4109937-4109956 | Msa0934320:intron | 20.0% |
| !!! | TTTTTATTTCCAATGATAGT+GGG | - | chr6_3:4109938-4109957 | Msa0934320:intron | 20.0% |
| !! | TATTATATTGGATAGGATAT+CGG | - | chr6_3:4109963-4109982 | Msa0934320:intron | 20.0% |
| !! | TTAATTAATTACTGACAGTT+GGG | + | chr6_3:4110102-4110121 | Msa0934310:intron | 20.0% |
| !! | ATTAATTAATTACTGACAGT+TGG | + | chr6_3:4110103-4110122 | Msa0934310:intron | 20.0% |
| !! | TCAGTAATTAATTAATGAGA+AGG | - | chr6_3:4110107-4110126 | Msa0934320:intron | 20.0% |
| !!! | TAAAATATTTGTTACCACAT+AGG | + | chr6_3:4110724-4110743 | Msa0934310:intron | 20.0% |
| !!! | TAAAATATTTGTTACCACAT+AGG | + | chr6_3:4110724-4110743 | Msa0934310:intron | 20.0% |
| !! | ACTCTTAAGAAAAATAGAAA+AGG | + | chr6_3:4110872-4110891 | Msa0934310:intron | 20.0% |
| !!! | TTCTATTTTTCTTAAGAGTT+TGG | - | chr6_3:4110873-4110892 | Msa0934320:intron | 20.0% |
| !!! | AGGAATTTTGCTAATTAAAA+TGG | - | chr6_3:4111133-4111152 | Msa0934320:intron | 20.0% |
| !!! | GGAATTTTGCTAATTAAAAT+GGG | - | chr6_3:4111134-4111153 | Msa0934320:intron | 20.0% |
| !!! | AATTTTTTCATTCTAATGTG+TGG | - | chr6_3:4111357-4111376 | Msa0934320:intron | 20.0% |
| !! | TTGGTTATATTTAATCATGT+TGG | - | chr6_3:4111715-4111734 | Msa0934320:intron | 20.0% |
| !!! | TTATTTTAATCCAATGCTAT+TGG | - | chr6_3:4111918-4111937 | Msa0934320:intron | 20.0% |
| !!! | GATAAATAATGTTGATTTCT+TGG | - | chr6_3:4112039-4112058 | Msa0934320:five_prime_UTR | 20.0% |
| !! | CATTACATTAAATTAAACCA+TGG | + | chr6_3:4112274-4112293 | Msa0934310:intron | 20.0% |
| !!! | CATGGTTTAATTTAATGTAA+TGG | - | chr6_3:4112272-4112291 | Msa0934320:five_prime_UTR | 20.0% |
| !! | TTAAACCTTTACTATTACAT+GGG | + | chr6_3:4112312-4112331 | Msa0934310:intron | 20.0% |
| !! | ATTAAACCTTTACTATTACA+TGG | + | chr6_3:4112313-4112332 | Msa0934310:intron | 20.0% |
| !! | CTGATAGAAACTTTAATTAA+AGG | + | chr6_3:4112345-4112364 | Msa0934310:intron | 20.0% |
| ! | GAAAAAGATGAAAGAAATTG+TGG | + | chr6_3:4108434-4108453 | Msa0934310:intron | 25.0% |
| !!! | TGTTGTTATTTTTTCTTCCT+TGG | - | chr6_3:4108516-4108535 | Msa0934320:three_prime_UTR | 25.0% |
| ! | TTATGACAAATTGAAATCCA+AGG | + | chr6_3:4108536-4108555 | Msa0934310:intron | 25.0% |
| ! | AAAAATTGAAACCCTAAAAC+TGG | + | chr6_3:4108651-4108670 | Msa0934310:intron | 25.0% |
| !!! | ACGTTTTTTATTTTGGGAAA+AGG | + | chr6_3:4108849-4108868 | Msa0934310:intron | 25.0% |
| !!! | CTTGGATACGTTTTTTATTT+TGG | + | chr6_3:4108856-4108875 | Msa0934310:intron | 25.0% |
| !!! | ACATTTTGATACAGAAACAA+AGG | + | chr6_3:4109103-4109122 | Msa0934310:intron | 25.0% |
| !!! | AACTTTTTCCAAAACTTTGA+AGG | + | chr6_3:4109193-4109212 | Msa0934310:intron | 25.0% |
| !!! | TTTTGGAAAAAGTTCTTGAT+GGG | - | chr6_3:4109199-4109218 | Msa0934320:intron | 25.0% |
| ! | ATTCAAAAACTTAGCTACAA+TGG | + | chr6_3:4109331-4109350 | Msa0934310:intron | 25.0% |
| ! | CTTTGAGTAAAATAAACTCT+CGG | + | chr6_3:4109567-4109586 | Msa0934310:intron | 25.0% |
| ! | TCAATAACAATCTCAACTAA+AGG | + | chr6_3:4109617-4109636 | Msa0934310:intron | 25.0% |
| ! | GCAATAATTTGAAGAATCAT+TGG | + | chr6_3:4109719-4109738 | Msa0934310:intron | 25.0% |
| ! | TTCTTCAAATTATTGCTCAT+TGG | - | chr6_3:4109723-4109742 | Msa0934320:intron | 25.0% |
| ! | TATAATAAACCCACTATCAT+TGG | + | chr6_3:4109950-4109969 | Msa0934310:intron | 25.0% |
| !!! | TGATAGTGGGTTTATTATAT+TGG | - | chr6_3:4109951-4109970 | Msa0934320:intron | 25.0% |
| !!! | TTAATTAATGAGAAGGTGTT+AGG | - | chr6_3:4110114-4110133 | Msa0934320:intron | 25.0% |
| !!! | TAATTAATGAGAAGGTGTTA+GGG | - | chr6_3:4110115-4110134 | Msa0934320:intron | 25.0% |
| ! | AAAACTAACACAACATACAA+AGG | + | chr6_3:4110300-4110319 | Msa0934310:intron | 25.0% |
| ! | TGATAATTTGGTCATTTACA+TGG | - | chr6_3:4110453-4110472 | Msa0934320:intron | 25.0% |
| ! | TAAATTTCAGTCAACATAAC+TGG | + | chr6_3:4110554-4110573 | Msa0934310:intron | 25.0% |
| !! | AGTTATGTTGACTGAAATTT+AGG | - | chr6_3:4110553-4110572 | Msa0934320:intron | 25.0% |
| !!! | AACTTTAGAATGATACCTTT+TGG | - | chr6_3:4110593-4110612 | Msa0934320:intron | 25.0% |
| !! | TTTTTATTCATCATGTGCAT+AGG | - | chr6_3:4110620-4110639 | Msa0934320:intron | 25.0% |
| ! | TAAAATAACAAAAAACGCAG+TGG | + | chr6_3:4111004-4111023 | Msa0934310:intron | 25.0% |
| !! | TTTTGCTAATTAAAATGGGA+AGG | - | chr6_3:4111138-4111157 | Msa0934320:intron | 25.0% |
| ! | TTTGCTAATTAAAATGGGAA+GGG | - | chr6_3:4111139-4111158 | Msa0934320:intron | 25.0% |
| ! | AACTAACTCATGTAGAATTT+AGG | - | chr6_3:4111253-4111272 | Msa0934320:intron | 25.0% |
| ! | TAGAATGAAAAAATTCTACC+TGG | + | chr6_3:4111352-4111371 | Msa0934310:intron | 25.0% |
| ! | TAAATAATGACACATGATCT+TGG | - | chr6_3:4111606-4111625 | Msa0934320:intron | 25.0% |
| ! | TAGCATTAATCATATCATAG+GGG | + | chr6_3:4111661-4111680 | Msa0934310:intron | 25.0% |
| ! | GTAGCATTAATCATATCATA+GGG | + | chr6_3:4111662-4111681 | Msa0934310:intron | 25.0% |
| ! | TGTAGCATTAATCATATCAT+AGG | + | chr6_3:4111663-4111682 | Msa0934310:intron | 25.0% |
| ! | TTTAAAGAAATGAAGGAGTA+AGG | + | chr6_3:4111800-4111819 | Msa0934310:intron | 25.0% |
| ! | ACGTGAATTTAAAGAAATGA+AGG | + | chr6_3:4111807-4111826 | Msa0934310:intron | 25.0% |
| ! | GAAACAAAGAGTAAATAACA+TGG | + | chr6_3:4111886-4111905 | Msa0934310:intron | 25.0% |
| !!! | TTTTTTCTTTCCAATAGCAT+TGG | + | chr6_3:4111931-4111950 | Msa0934310:intron | 25.0% |
| ! | AAGTCTGTATCTAATGAATT+AGG | - | chr6_3:4111950-4111969 | Msa0934320:intron | 25.0% |
| !! | TGGAAATGTCTGTTAAATTT+TGG | - | chr6_3:4112070-4112089 | Msa0934320:five_prime_UTR | 25.0% |
| ! | ACATTGTCATGAACAATTTA+TGG | - | chr6_3:4112104-4112123 | Msa0934320:five_prime_UTR | 25.0% |
| ! | ATTTATATATCGCTGATGAT+AGG | + | chr6_3:4112401-4112420 | Msa0934310:intron | 25.0% |
| !!! | ATTTTTTCAAGACAAAGAGT+AGG | + | chr6_3:4112441-4112460 | Msa0934310:intron | 25.0% |
| ! | TACTCTTTGTCTTGAAAAAA+TGG | - | chr6_3:4112440-4112459 | Msa0934320:five_prime_UTR | 25.0% |
| GGAAGAAGAAGATAATAGTA+AGG | + | chr6_3:4108377-4108396 | Msa0934310:intron | 30.0% | |
| ! | AAATTGTGGAGGACATTTTT+GGG | + | chr6_3:4108420-4108439 | Msa0934310:intron | 30.0% |
| AAAGATGAAAGAAATTGTGG+AGG | + | chr6_3:4108431-4108450 | Msa0934310:intron | 30.0% | |
| GTGAAGGGAAAATTGAAAAT+GGG | + | chr6_3:4108589-4108608 | Msa0934310:intron | 30.0% | |
| TGTGAAGGGAAAATTGAAAA+TGG | + | chr6_3:4108590-4108609 | Msa0934310:intron | 30.0% | |
| !!! | GGTTTTGTTTTCCAGTTTTA+GGG | - | chr6_3:4108637-4108656 | Msa0934320:CDS | 30.0% |
| CACAATCAGATTCAACAAAA+AGG | + | chr6_3:4108718-4108737 | Msa0934310:intron | 30.0% | |
| !! | AGATTTAAAACAGAAGTGCT+TGG | + | chr6_3:4108874-4108893 | Msa0934310:intron | 30.0% |
| ! | CAAAATGTGTTTTGCAGATT+CGG | - | chr6_3:4109115-4109134 | Msa0934320:intron | 30.0% |
| !!! | GTTTTGGAAAAAGTTCTTGA+TGG | - | chr6_3:4109198-4109217 | Msa0934320:intron | 30.0% |
| TGCAAAAGAGAAAAATCACA+GGG | + | chr6_3:4109528-4109547 | Msa0934310:intron | 30.0% | |
| TTGCAAAAGAGAAAAATCAC+AGG | + | chr6_3:4109529-4109548 | Msa0934310:intron | 30.0% | |
| AGTAAAATAAACTCTCGGAA+TGG | + | chr6_3:4109562-4109581 | Msa0934310:intron | 30.0% | |
| CAGCAAGTTATTTAACATCA+GGG | - | chr6_3:4109861-4109880 | Msa0934320:intron | 30.0% | |
| AGCAAGTTATTTAACATCAG+GGG | - | chr6_3:4109862-4109881 | Msa0934320:intron | 30.0% | |
| !! | ATAAAGAAAGTGATGGACAT+GGG | + | chr6_3:4109901-4109920 | Msa0934310:intron | 30.0% |
| !! | AATAAAGAAAGTGATGGACA+TGG | + | chr6_3:4109902-4109921 | Msa0934310:intron | 30.0% |
| GTGGGTTTATTATATTGGAT+AGG | - | chr6_3:4109956-4109975 | Msa0934320:intron | 30.0% | |
| ATTCTTACTCAAAGTAGACA+AGG | - | chr6_3:4109988-4110007 | Msa0934320:intron | 30.0% | |
| TAATATCTCATGTACGAAAG+TGG | + | chr6_3:4110207-4110226 | Msa0934310:intron | 30.0% | |
| ! | ATGAGTATAGTGTAGTGTTT+TGG | - | chr6_3:4110501-4110520 | Msa0934320:intron | 30.0% |
| !!! | TTTAGGTTTTGAATCCATTC+TGG | - | chr6_3:4110570-4110589 | Msa0934320:intron | 30.0% |
| !! | ATCATTCTAAAGTTCCAGAA+TGG | + | chr6_3:4110587-4110606 | Msa0934310:intron | 30.0% |
| ATCTATCATTATGCAGCAAA+AGG | + | chr6_3:4110694-4110713 | Msa0934310:intron | 30.0% | |
| TTGCTGCATAATGATAGATA+TGG | - | chr6_3:4110695-4110714 | Msa0934320:intron | 30.0% | |
| TGCTGCATAATGATAGATAT+GGG | - | chr6_3:4110696-4110715 | Msa0934320:intron | 30.0% | |
| ATCTATCATTATGCAGCAAA+AGG | + | chr6_3:4110694-4110713 | Msa0934310:intron | 30.0% | |
| !!! | GTTATTTCTAGCATCAGTTT+TGG | - | chr6_3:4111483-4111502 | Msa0934320:intron | 30.0% |
| AACAGAAAAGGTTACAACAA+AGG | + | chr6_3:4111548-4111567 | Msa0934310:intron | 30.0% | |
| ! | GTGAACAATATGAAGTATCA+TGG | - | chr6_3:4111635-4111654 | Msa0934320:CDS | 30.0% |
| TTTCACACAAGAAAGATTGA+TGG | - | chr6_3:4111690-4111709 | Msa0934320:intron | 30.0% | |
| ATGCACACAAAAAGAAATGA+AGG | + | chr6_3:4111832-4111851 | Msa0934310:intron | 30.0% | |
| GAGTAAATAACATGGAAATG+AGG | + | chr6_3:4111878-4111897 | Msa0934310:intron | 30.0% | |
| AATTAGGATACATCTGATGT+TGG | - | chr6_3:4111966-4111985 | Msa0934320:intron | 30.0% | |
| !! | ATGTCTGTTAAATTTTGGTC+AGG | - | chr6_3:4112075-4112094 | Msa0934320:five_prime_UTR | 30.0% |
| CATGAACAATTTATGGTGAA+TGG | - | chr6_3:4112111-4112130 | Msa0934320:five_prime_UTR | 30.0% | |
| CATGTGTATTCCATATAGTA+TGG | - | chr6_3:4112203-4112222 | Msa0934320:five_prime_UTR | 30.0% | |
| ! | TTTTGCCCATGTAATAGTAA+AGG | - | chr6_3:4112304-4112323 | Msa0934320:five_prime_UTR | 30.0% |
| AGAAGATAATAGTAAGGCAG+AGG | + | chr6_3:4108371-4108390 | Msa0934310:intron | 35.0% | |
| ! | AATTGTGGAGGACATTTTTG+GGG | + | chr6_3:4108419-4108438 | Msa0934310:intron | 35.0% |
| ! | GAAATTGTGGAGGACATTTT+TGG | + | chr6_3:4108421-4108440 | Msa0934310:intron | 35.0% |
| AAAACCGTAAAAGAGAGAGA+GGG | + | chr6_3:4108623-4108642 | Msa0934310:intron | 35.0% | |
| !!! | CGGTTTTGTTTTCCAGTTTT+AGG | - | chr6_3:4108636-4108655 | Msa0934320:CDS | 35.0% |
| TTTGTTGAATCTGATTGTGC+AGG | - | chr6_3:4108719-4108738 | Msa0934320:CDS | 35.0% | |
| CAGTGTGTTTATCAATTCTG+TGG | - | chr6_3:4108966-4108985 | Msa0934320:intron | 35.0% | |
| AAACAAAGGACATACCTGTT+TGG | + | chr6_3:4109089-4109108 | Msa0934310:intron | 35.0% | |
| ! | GAAGTTCTCCTTCAAAGTTT+TGG | - | chr6_3:4109182-4109201 | Msa0934320:intron | 35.0% |
| ! | TTTTTCTCTTTGGCAGAAGT+TGG | - | chr6_3:4109440-4109459 | Msa0934320:intron | 35.0% |
| ! | CAGAATAGACAGAAGTACAT+TGG | + | chr6_3:4109490-4109509 | Msa0934310:intron | 35.0% |
| ATGTACTTCTGTCTATTCTG+AGG | - | chr6_3:4109490-4109509 | Msa0934320:intron | 35.0% | |
| AGAGAAAAATCACAGGGTAA+AGG | + | chr6_3:4109522-4109541 | Msa0934310:intron | 35.0% | |
| TGAACTTTACTTGAACTGAG+TGG | + | chr6_3:4109753-4109772 | Msa0934310:intron | 35.0% | |
| ! | GAAAATTGATAGCAGAAGCA+TGG | - | chr6_3:4109836-4109855 | Msa0934320:intron | 35.0% |
| GCAGCAAGTTATTTAACATC+AGG | - | chr6_3:4109860-4109879 | Msa0934320:intron | 35.0% | |
| !! | TAAAGAAAGTGATGGACATG+GGG | + | chr6_3:4109900-4109919 | Msa0934310:intron | 35.0% |
| TTACTCAAAGTAGACAAGGT+GGG | - | chr6_3:4109992-4110011 | Msa0934320:intron | 35.0% | |
| TCATTCATGTGATCTTTGTG+TGG | - | chr6_3:4110346-4110365 | Msa0934320:intron | 35.0% | |
| CATATGAGAGTTGTTGTCAT+AGG | - | chr6_3:4110402-4110421 | Msa0934320:intron | 35.0% | |
| !!! | AGTGTAGTGTTTTGGTTGAT+TGG | - | chr6_3:4110509-4110528 | Msa0934320:intron | 35.0% |
| !!! | TTTTAAAACCACTACCATGC+TGG | - | chr6_3:4110913-4110932 | Msa0934320:intron | 35.0% |
| !! | TTGATTCTAAAACTCCAGCA+TGG | + | chr6_3:4110930-4110949 | Msa0934310:intron | 35.0% |
| GACATCTTTGTAGTCAAAGA+CGG | - | chr6_3:4110967-4110986 | Msa0934320:intron | 35.0% | |
| ! | ATGTTGGCTAATTGATGCTT+CGG | + | chr6_3:4111169-4111188 | Msa0934310:intron | 35.0% |
| GCATCAATTAGCCAACATAT+TGG | - | chr6_3:4111171-4111190 | Msa0934320:intron | 35.0% | |
| TGCAAAGTACACCAATATGT+TGG | + | chr6_3:4111185-4111204 | Msa0934310:intron | 35.0% | |
| TAGGAAAGAAGACATGATGT+TGG | - | chr6_3:4111306-4111325 | Msa0934320:intron | 35.0% | |
| AGGAAAGAAGACATGATGTT+GGG | - | chr6_3:4111307-4111326 | Msa0934320:intron | 35.0% | |
| TTAGTTCATGCTTCAATACC+AGG | - | chr6_3:4111331-4111350 | Msa0934320:intron | 35.0% | |
| TGGATGTGTATTGAATGGTA+TGG | - | chr6_3:4111386-4111405 | Msa0934320:intron | 35.0% | |
| GGATGTGTATTGAATGGTAT+GGG | - | chr6_3:4111387-4111406 | Msa0934320:intron | 35.0% | |
| AGTTTATATAAGTGGATGCC+TGG | + | chr6_3:4111586-4111605 | Msa0934310:intron | 35.0% | |
| ACAAGAAAGATTGATGGAGT+TGG | - | chr6_3:4111696-4111715 | Msa0934320:intron | 35.0% | |
| TTTATCTCAGAGTCTGTAGT+AGG | + | chr6_3:4112025-4112044 | Msa0934310:intron | 35.0% | |
| GTAGTGATTGCCATACTATA+TGG | + | chr6_3:4112216-4112235 | Msa0934310:intron | 35.0% | |
| ! | ACAAGTTTTCTACGCATTTG+AGG | - | chr6_3:4112366-4112385 | Msa0934320:five_prime_UTR | 35.0% |
| !! | ACATTTTTGGGGGAAATGAG+TGG | + | chr6_3:4108408-4108427 | Msa0934310:intron | 40.0% |
| !! | ATTGTGGAGGACATTTTTGG+GGG | + | chr6_3:4108418-4108437 | Msa0934310:intron | 40.0% |
| CAAAACCGTAAAAGAGAGAG+AGG | + | chr6_3:4108624-4108643 | Msa0934310:intron | 40.0% | |
| AGGTTGTCAGATTCAAGGAA+TGG | - | chr6_3:4108739-4108758 | Msa0934320:intron | 40.0% | |
| GGTTGTCAGATTCAAGGAAT+GGG | - | chr6_3:4108740-4108759 | Msa0934320:intron | 40.0% | |
| ATCAAACGTGTGTTTGTGGA+TGG | + | chr6_3:4109051-4109070 | Msa0934310:intron | 40.0% | |
| CATGATCAAACGTGTGTTTG+TGG | + | chr6_3:4109055-4109074 | Msa0934310:intron | 40.0% | |
| CACAAACACACGTTTGATCA+TGG | - | chr6_3:4109053-4109072 | Msa0934320:intron | 40.0% | |
| ATGGAAATACGCTACCAAAC+AGG | - | chr6_3:4109072-4109091 | Msa0934320:intron | 40.0% | |
| TTCCAACATGCTTCTGCTAT+CGG | + | chr6_3:4109819-4109838 | Msa0934310:intron | 40.0% | |
| CTTACTCAAAGTAGACAAGG+TGG | - | chr6_3:4109991-4110010 | Msa0934320:intron | 40.0% | |
| GTGATTGGAACAAACTTGGA+AGG | + | chr6_3:4110080-4110099 | Msa0934310:intron | 40.0% | |
| TTGGGTGATTGGAACAAACT+TGG | + | chr6_3:4110084-4110103 | Msa0934310:intron | 40.0% | |
| ATTACTGACAGTTGGGTGAT+TGG | + | chr6_3:4110095-4110114 | Msa0934310:intron | 40.0% | |
| TGGAATCTTCACATAGTCGT+GGG | + | chr6_3:4110142-4110161 | Msa0934310:intron | 40.0% | |
| ATGGAATCTTCACATAGTCG+TGG | + | chr6_3:4110143-4110162 | Msa0934310:intron | 40.0% | |
| ! | TTTGTGTGGTTGACTTCTAC+AGG | - | chr6_3:4110360-4110379 | Msa0934320:intron | 40.0% |
| AAAGGAGAAGAAAGGAGGTA+TGG | + | chr6_3:4110676-4110695 | Msa0934310:intron | 40.0% | |
| ATGCAGCAAAAGGAGAAGAA+AGG | + | chr6_3:4110684-4110703 | Msa0934310:intron | 40.0% | |
| GATAGATATGAGCACCTATG+TGG | - | chr6_3:4110772-4110791 | Msa0934320:intron | 40.0% | |
| TGTCTCATGATCTCTCAGTT+TGG | - | chr6_3:4111276-4111295 | Msa0934320:intron | 40.0% | |
| ACGCATGGATGTGTATTGAA+TGG | - | chr6_3:4111381-4111400 | Msa0934320:intron | 40.0% | |
| !! | CTAGCATCAGTTTTGGCATA+AGG | - | chr6_3:4111490-4111509 | Msa0934320:intron | 40.0% |
| !! | ATCAGTTTTGGCATAAGGTG+TGG | - | chr6_3:4111495-4111514 | Msa0934320:intron | 40.0% |
| !! | TCAGTTTTGGCATAAGGTGT+GGG | - | chr6_3:4111496-4111515 | Msa0934320:intron | 40.0% |
| GGTTGGAACTCAAACAGAAA+AGG | + | chr6_3:4111560-4111579 | Msa0934310:intron | 40.0% | |
| TATATAAGTGGATGCCTGGA+GGG | + | chr6_3:4111582-4111601 | Msa0934310:intron | 40.0% | |
| TTATATAAGTGGATGCCTGG+AGG | + | chr6_3:4111583-4111602 | Msa0934310:intron | 40.0% | |
| GAAAGCTCTACAAACAACTC+AGG | - | chr6_3:4112135-4112154 | Msa0934320:five_prime_UTR | 40.0% | |
| AAACAACTCAGGTCTAGAGA+TGG | - | chr6_3:4112146-4112165 | Msa0934320:five_prime_UTR | 40.0% | |
| GATGGTGCAACTATCAAACT+CGG | - | chr6_3:4112164-4112183 | Msa0934320:five_prime_UTR | 40.0% | |
| CAAATATTGCATTGAGCCCA+TGG | - | chr6_3:4112254-4112273 | Msa0934320:five_prime_UTR | 40.0% | |
| CAATGAGACAAACATACGCT+TGG | + | chr6_3:4112469-4112488 | Msa0934310:intron | 40.0% | |
| !! | TTTTGGGGGAAATGAGTGGA+AGG | + | chr6_3:4108404-4108423 | Msa0934310:intron | 45.0% |
| AGGGAGCTTAGGTTTGTGAA+GGG | + | chr6_3:4108604-4108623 | Msa0934310:intron | 45.0% | |
| AAAAGAGAGAGAGGGAGCTT+AGG | + | chr6_3:4108615-4108634 | Msa0934310:intron | 45.0% | |
| ! | AGCTCCCTCTCTCTCTTTTA+CGG | - | chr6_3:4108616-4108635 | Msa0934320:CDS | 45.0% |
| TGTGCAGGTTGTCAGATTCA+AGG | - | chr6_3:4108734-4108753 | Msa0934320:intron | 45.0% | |
| GTCAGATTCAAGGAATGGGT+CGG | - | chr6_3:4108744-4108763 | Msa0934320:intron | 45.0% | |
| ATTCAAGGAATGGGTCGGTT+GGG | - | chr6_3:4108749-4108768 | Msa0934320:intron | 45.0% | |
| CCAAGCTTCTGCAGTTAACA+TGG | + | chr6_3:4108999-4109018 | Msa0934310:intron | 45.0% | |
| CCATGTTAACTGCAGAAGCT+TGG | - | chr6_3:4108996-4109015 | Msa0934320:intron | 45.0% | |
| TAACTGCAGAAGCTTGGTTC+TGG | - | chr6_3:4109002-4109021 | Msa0934320:intron | 45.0% | |
| !! | TCTGGAGCTTTTGTAGATCG+CGG | - | chr6_3:4109020-4109039 | Msa0934320:intron | 45.0% |
| TTCTCTTTGGCAGAAGTTGG+TGG | - | chr6_3:4109443-4109462 | Msa0934320:intron | 45.0% | |
| CAAACTTGGAAGGCAGTACA+TGG | + | chr6_3:4110070-4110089 | Msa0934310:intron | 45.0% | |
| ! | TTAAGGCTGAAAGCACACAC+TGG | + | chr6_3:4110261-4110280 | Msa0934310:intron | 45.0% |
| CAGCAAAAGGAGAAGAAAGG+AGG | + | chr6_3:4110681-4110700 | Msa0934310:intron | 45.0% | |
| GATAGATATGGGCACCTATG+TGG | - | chr6_3:4110707-4110726 | Msa0934320:intron | 45.0% | |
| CTAAAACTCCAGCATGGTAG+TGG | + | chr6_3:4110924-4110943 | Msa0934310:intron | 45.0% | |
| ACAAAAAACGCAGTGGCATC+AGG | + | chr6_3:4110997-4111016 | Msa0934310:intron | 45.0% | |
| ! | AGTTTTCTCCTTTGCACAGC+AGG | - | chr6_3:4111113-4111132 | Msa0934320:intron | 45.0% |
| GCAAAATTCCTGCTGTGCAA+AGG | + | chr6_3:4111124-4111143 | Msa0934310:intron | 45.0% | |
| ATTCTAATGTGTGGCACGCA+TGG | - | chr6_3:4111366-4111385 | Msa0934320:intron | 45.0% | |
| !! | CAGTTTTGGCATAAGGTGTG+GGG | - | chr6_3:4111497-4111516 | Msa0934320:intron | 45.0% |
| ! | TAAGGAGTTAAGTTGCCCTG+TGG | - | chr6_3:4111522-4111541 | Msa0934320:intron | 45.0% |
| AGGTTACAACAAAGGCCACA+GGG | + | chr6_3:4111540-4111559 | Msa0934310:intron | 45.0% | |
| AAGGTTACAACAAAGGCCAC+AGG | + | chr6_3:4111541-4111560 | Msa0934310:intron | 45.0% | |
| ATATAAGTGGATGCCTGGAG+GGG | + | chr6_3:4111581-4111600 | Msa0934310:intron | 45.0% | |
| CATCTGATGTTGGTGTGCAA+AGG | - | chr6_3:4111976-4111995 | Msa0934320:intron | 45.0% | |
| TTGATTTCTTGGGACGTGCT+TGG | - | chr6_3:4112050-4112069 | Msa0934320:five_prime_UTR | 45.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr6_3:4108335-4108354 | Msa0934310:intron | 50.0% | |
| GAGGGAGCTTAGGTTTGTGA+AGG | + | chr6_3:4108605-4108624 | Msa0934310:intron | 50.0% | |
| GATTCAAGGAATGGGTCGGT+TGG | - | chr6_3:4108748-4108767 | Msa0934320:intron | 50.0% | |
| TTGGGAGAAGGAACAACGCT+GGG | - | chr6_3:4108767-4108786 | Msa0934320:intron | 50.0% | |
| !! | GATGGTGGATCAGGACTTAG+AGG | - | chr6_3:4108791-4108810 | Msa0934320:intron | 50.0% |
| !! | TTTGGCAGAAGTTGGTGGTG+AGG | - | chr6_3:4109448-4109467 | Msa0934320:intron | 50.0% |
| ! | GTCCGATAGCAGAAGCATGT+TGG | - | chr6_3:4109814-4109833 | Msa0934320:intron | 50.0% |
| CTTGGAAGGCAGTACATGGA+AGG | + | chr6_3:4110066-4110085 | Msa0934310:intron | 50.0% | |
| ! | CTCTCAGTTTGGTAGCAGCT+AGG | - | chr6_3:4111287-4111306 | Msa0934320:intron | 50.0% |
| GGTGCAACTATCAAACTCGG+TGG | - | chr6_3:4112167-4112186 | Msa0934320:five_prime_UTR | 50.0% | |
| GAGAGAGAGAGAGAGAGAGG+AGG | + | chr6_3:4108334-4108353 | Msa0934310:intron | 55.0% | |
| GGGAAATGAGTGGAAGGAGG+TGG | + | chr6_3:4108398-4108417 | Msa0934310:intron | 55.0% | |
| TGGGGGAAATGAGTGGAAGG+AGG | + | chr6_3:4108401-4108420 | Msa0934310:intron | 55.0% | |
| GTTGGGAGAAGGAACAACGC+TGG | - | chr6_3:4108766-4108785 | Msa0934320:intron | 55.0% | |
| GAAGGAACAACGCTGGGAGA+TGG | - | chr6_3:4108773-4108792 | Msa0934320:intron | 55.0% | |
| GGTGGATCAGGACTTAGAGG+TGG | - | chr6_3:4108794-4108813 | Msa0934320:intron | 55.0% | |
| GAGGTGGCAACTGCAACAAC+TGG | - | chr6_3:4108810-4108829 | Msa0934320:intron | 55.0% | |
| GGCATAAGGTGTGGGGCTTA+AGG | - | chr6_3:4111504-4111523 | Msa0934320:intron | 55.0% | |
| ! | GTTTGAGTTCCAACCCCTCC+AGG | - | chr6_3:4111565-4111584 | Msa0934320:intron | 55.0% |
| GGAATGGGTCGGTTGGGAGA+AGG | - | chr6_3:4108755-4108774 | Msa0934320:intron | 60.0% | |
| GGAACAACGCTGGGAGATGG+TGG | - | chr6_3:4108776-4108795 | Msa0934320:intron | 60.0% | |
| !! | ACGCTGGGAGATGGTGGATC+AGG | - | chr6_3:4108782-4108801 | Msa0934320:intron | 60.0% |
| AAGTGGATGCCTGGAGGGGT+TGG | + | chr6_3:4111577-4111596 | Msa0934310:intron | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr6_3 | gene | 4108304 | 4112531 | 4108304 | ID=Msa0934320;Name=Msa0934320 |
| chr6_3 | mRNA | 4108304 | 4112531 | 4108304 | ID=Msa0934320-mRNA-1;Parent=Msa0934320;Name=Msa0934320-mRNA-1;_AED=0.34;_eAED=0.34;_QI=631|0.25|0.6|1|0|0.2|5|289|84 |
| chr6_3 | exon | 4108304 | 4108738 | 4108304 | ID=Msa0934320-mRNA-1:exon:1281;Parent=Msa0934320-mRNA-1 |
| chr6_3 | exon | 4111371 | 4111379 | 4111371 | ID=Msa0934320-mRNA-1:exon:1280;Parent=Msa0934320-mRNA-1 |
| chr6_3 | exon | 4111626 | 4111703 | 4111626 | ID=Msa0934320-mRNA-1:exon:1279;Parent=Msa0934320-mRNA-1 |
| chr6_3 | exon | 4111742 | 4111866 | 4111742 | ID=Msa0934320-mRNA-1:exon:1278;Parent=Msa0934320-mRNA-1 |
| chr6_3 | exon | 4112004 | 4112531 | 4112004 | ID=Msa0934320-mRNA-1:exon:1277;Parent=Msa0934320-mRNA-1 |
| chr6_3 | five_prime_UTR | 4112004 | 4112531 | 4112004 | ID=Msa0934320-mRNA-1:five_prime_utr;Parent=Msa0934320-mRNA-1 |
| chr6_3 | five_prime_UTR | 4111764 | 4111866 | 4111764 | ID=Msa0934320-mRNA-1:five_prime_utr;Parent=Msa0934320-mRNA-1 |
| chr6_3 | CDS | 4111742 | 4111763 | 4111742 | ID=Msa0934320-mRNA-1:cds;Parent=Msa0934320-mRNA-1 |
| chr6_3 | CDS | 4111626 | 4111703 | 4111626 | ID=Msa0934320-mRNA-1:cds;Parent=Msa0934320-mRNA-1 |
| chr6_3 | CDS | 4111371 | 4111379 | 4111371 | ID=Msa0934320-mRNA-1:cds;Parent=Msa0934320-mRNA-1 |
| chr6_3 | CDS | 4108593 | 4108738 | 4108593 | ID=Msa0934320-mRNA-1:cds;Parent=Msa0934320-mRNA-1 |
| chr6_3 | three_prime_UTR | 4108304 | 4108592 | 4108304 | ID=Msa0934320-mRNA-1:three_prime_utr;Parent=Msa0934320-mRNA-1 |
| Gene Sequence |
| Protein sequence |
