Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062170 | Msa0083710 | 0.806524 | 7.890759e-50 | -8.615850e-47 |
| Msa0062170 | Msa0234270 | 0.850275 | 1.887068e-60 | -8.615850e-47 |
| Msa0062170 | Msa0234320 | 0.850900 | 1.259241e-60 | -8.615850e-47 |
| Msa0062170 | Msa0394280 | 0.815392 | 9.466561e-52 | -8.615850e-47 |
| Msa0062170 | Msa0483040 | 0.820614 | 6.250307e-53 | -8.615850e-47 |
| Msa0062170 | Msa0518930 | 0.833871 | 4.156580e-56 | -8.615850e-47 |
| Msa0062170 | Msa0518950 | 0.850282 | 1.877857e-60 | -8.615850e-47 |
| Msa0062170 | Msa0518970 | 0.817255 | 3.625673e-52 | -8.615850e-47 |
| Msa0062170 | Msa0518980 | 0.841811 | 3.789792e-58 | -8.615850e-47 |
| Msa0062170 | Msa0715520 | 0.823562 | 1.295768e-53 | -8.615850e-47 |
| Msa0062170 | Msa0767410 | 0.818939 | 1.508509e-52 | -8.615850e-47 |
| Msa0062170 | Msa0826320 | 0.800898 | 1.161063e-48 | -8.615850e-47 |
| Msa0062170 | Msa0844410 | 0.800123 | 1.670780e-48 | -8.615850e-47 |
| Msa0062170 | Msa0934320 | 0.832900 | 7.260021e-56 | -8.615850e-47 |
| Msa0062170 | Msa1350680 | 0.861836 | 7.753431e-64 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 84 sgRNAs with CRISPR-Local
Find 324 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATCATTGGCCACTCATATT+TGG | 0.173214 | 1_2:+21374504 | None:intergenic |
| TATGATAACCTTACAAAATA+AGG | 0.190467 | 1_2:+21374451 | None:intergenic |
| ATAAAATGCATTAGCATAAT+TGG | 0.204249 | 1_2:+21374658 | None:intergenic |
| CACCACTGCCCACTCATAAT+TGG | 0.241107 | 1_2:+21374589 | None:intergenic |
| TAATCACTCTACCCTGGATT+TGG | 0.280284 | 1_2:+21375468 | None:intergenic |
| CCTTCCTTGAATCTTCAATT+GGG | 0.289043 | 1_2:+21379410 | None:intergenic |
| TCCTTCCTTGAATCTTCAAT+TGG | 0.301865 | 1_2:+21379409 | None:intergenic |
| GGACACAATTATGGACAAAA+AGG | 0.319177 | 1_2:+21379854 | None:intergenic |
| TGGGTCTGGACAGGCTTTGC+AGG | 0.323085 | 1_2:+21379753 | None:intergenic |
| GGGCTACAGTCTTGGTCCTT+TGG | 0.324711 | 1_2:-21374953 | Msa0062170:CDS |
| GAATCTTCAATTGGGGTTCA+TGG | 0.327555 | 1_2:+21379418 | None:intergenic |
| TTTGACAGGTTCGAGTCTAT+TGG | 0.339844 | 1_2:-21378433 | Msa0062170:intron |
| GGTGGATGAGGACACAATTA+TGG | 0.357764 | 1_2:+21379845 | None:intergenic |
| TCATTATGTGGATGTGGGTT+TGG | 0.368797 | 1_2:-21374762 | Msa0062170:three_prime_UTR |
| TCCTTTGGCAGTTCAGTAGC+TGG | 0.385538 | 1_2:-21374938 | Msa0062170:CDS |
| TGGGTCCGGACAGGCTTTGC+AGG | 0.391243 | 1_2:+21379785 | None:intergenic |
| TATGACATTGATTGATGATC+AGG | 0.420972 | 1_2:-21375393 | Msa0062170:intron |
| TGCTTAGTGCGTGATGGGTC+TGG | 0.425184 | 1_2:+21379739 | None:intergenic |
| GCTTTGCAGGTTCGCGTGAT+GGG | 0.429903 | 1_2:+21379766 | None:intergenic |
| GCAGGTTCGCGTGATGGGTC+CGG | 0.434462 | 1_2:+21379771 | None:intergenic |
| TGTTGCACTGTTAGTGTCTT+CGG | 0.436416 | 1_2:-21374790 | Msa0062170:exon |
| GGCTTTGCAGGTTCAGTAAG+TGG | 0.437754 | 1_2:+21379797 | None:intergenic |
| GGCTTTGCAGGTTCGCGTGA+TGG | 0.439101 | 1_2:+21379765 | None:intergenic |
| GCATCCATCGACCCTCTAGA+TGG | 0.441861 | 1_2:+21374912 | None:intergenic |
| ATGATAACCTTACAAAATAA+GGG | 0.444865 | 1_2:+21374452 | None:intergenic |
| GTGGAGTGGGATGGCAGACT+TGG | 0.445114 | 1_2:+21379824 | None:intergenic |
| AAATCATGTTCTAACATCAT+TGG | 0.448029 | 1_2:+21374490 | None:intergenic |
| GAACCCCAATTGAAGATTCA+AGG | 0.454488 | 1_2:-21379414 | Msa0062170:five_prime_UTR |
| TCATTTACATTGAAACGGTC+AGG | 0.455505 | 1_2:+21375431 | None:intergenic |
| TTGTACCTGAGAGTGAGATT+TGG | 0.457467 | 1_2:+21378375 | None:intergenic |
| CTGAACCTGCAAAGCCTGTC+CGG | 0.465161 | 1_2:-21379790 | Msa0062170:five_prime_UTR |
| GGTCGATGGATGCAGTTGTT+TGG | 0.465699 | 1_2:-21374902 | Msa0062170:CDS |
| GTGAATTCAATGATGCCTTA+AGG | 0.467128 | 1_2:+21374317 | None:intergenic |
| GAGTGGGATGGCAGACTTGG+TGG | 0.467261 | 1_2:+21379827 | None:intergenic |
| TTACGAAATCTGCAGACAAT+TGG | 0.468255 | 1_2:-21375506 | Msa0062170:five_prime_UTR |
| CGAAATCTGCAGACAATTGG+TGG | 0.470806 | 1_2:-21375503 | Msa0062170:five_prime_UTR |
| GACAACTCATTATGTGGATG+TGG | 0.481517 | 1_2:-21374768 | Msa0062170:three_prime_UTR |
| CTTCCTTGAATCTTCAATTG+GGG | 0.481628 | 1_2:+21379411 | None:intergenic |
| ATGTGTCAGTGAATTCCTTA+AGG | 0.481691 | 1_2:-21374332 | Msa0062170:three_prime_UTR |
| TTTGGATATCAATCAAAAGC+TGG | 0.485581 | 1_2:+21374522 | None:intergenic |
| CGTTTCAATGTAAATGAAGT+TGG | 0.485664 | 1_2:-21375425 | Msa0062170:five_prime_UTR |
| CAACTTCATTTACATTGAAA+CGG | 0.487671 | 1_2:+21375426 | None:intergenic |
| TGTGCAGGTTGTAATATTCA+AGG | 0.496331 | 1_2:-21379474 | Msa0062170:intron |
| GAATCAATACATTACACGTT+GGG | 0.498071 | 1_2:+21374424 | None:intergenic |
| CTCTGTTATGAGAAAATCAC+AGG | 0.505858 | 1_2:+21379698 | None:intergenic |
| TTCGCGTGATGGGTCCGGAC+AGG | 0.507792 | 1_2:+21379776 | None:intergenic |
| AAATTCCAAATCTCACTCTC+AGG | 0.509176 | 1_2:-21378380 | Msa0062170:intron |
| AAAGATTGACTTCCAAATCC+AGG | 0.518043 | 1_2:-21375480 | Msa0062170:five_prime_UTR |
| AGTAGCTGGTTGCCATCTAG+AGG | 0.524990 | 1_2:-21374924 | Msa0062170:CDS |
| CTAGTTGTTGTTGCTTGTTG+TGG | 0.530968 | 1_2:+21378987 | None:intergenic |
| GTAATTGCTTAGTGCGTGAT+GGG | 0.537077 | 1_2:+21379734 | None:intergenic |
| GTAATATTCAAGGAAAGGGT+CGG | 0.539933 | 1_2:-21379464 | Msa0062170:five_prime_UTR |
| TTGAAGACATAAGCTACTAA+AGG | 0.540732 | 1_2:-21378961 | Msa0062170:intron |
| AGTGCGTGATGGGTCTGGAC+AGG | 0.542822 | 1_2:+21379744 | None:intergenic |
| TAATATTCAAGGAAAGGGTC+GGG | 0.543776 | 1_2:-21379463 | Msa0062170:five_prime_UTR |
| GGTTGTAATATTCAAGGAAA+GGG | 0.547373 | 1_2:-21379468 | Msa0062170:five_prime_UTR |
| GATGGCAGACTTGGTGGATG+AGG | 0.552355 | 1_2:+21379833 | None:intergenic |
| AGTAATTGCTTAGTGCGTGA+TGG | 0.553382 | 1_2:+21379733 | None:intergenic |
| GTTGTGGTGACTATTTGTCA+AGG | 0.554679 | 1_2:+21379003 | None:intergenic |
| CAGTAAGTGGAGGTGTGGAG+TGG | 0.555893 | 1_2:+21379810 | None:intergenic |
| TCTTCGGACAACTCATTATG+TGG | 0.566124 | 1_2:-21374774 | Msa0062170:three_prime_UTR |
| AGTGGAGGTGTGGAGTGGGA+TGG | 0.567430 | 1_2:+21379815 | None:intergenic |
| AAAGGCTTTAAATAAGAGAG+AGG | 0.568353 | 1_2:+21379943 | None:intergenic |
| AGTAAGTGGAGGTGTGGAGT+GGG | 0.570818 | 1_2:+21379811 | None:intergenic |
| GTTGCCATCTAGAGGGTCGA+TGG | 0.576461 | 1_2:-21374916 | Msa0062170:CDS |
| GATTGATATCCAAATATGAG+TGG | 0.584285 | 1_2:-21374513 | Msa0062170:three_prime_UTR |
| CCCAATTGAAGATTCAAGGA+AGG | 0.589854 | 1_2:-21379410 | Msa0062170:five_prime_UTR |
| AATTGACATCCAATTATGAG+TGG | 0.592721 | 1_2:-21374598 | Msa0062170:three_prime_UTR |
| ACAACTCATTATGTGGATGT+GGG | 0.592812 | 1_2:-21374767 | Msa0062170:three_prime_UTR |
| AAGATTGACTTCCAAATCCA+GGG | 0.596487 | 1_2:-21375479 | Msa0062170:five_prime_UTR |
| GCTATTGAGTGAAACATCAA+AGG | 0.598344 | 1_2:+21379925 | None:intergenic |
| ACCAGCTACTGAACTGCCAA+AGG | 0.599582 | 1_2:+21374937 | None:intergenic |
| AGGTTGTAATATTCAAGGAA+AGG | 0.603531 | 1_2:-21379469 | Msa0062170:five_prime_UTR |
| AAGGCTTTAAATAAGAGAGA+GGG | 0.610840 | 1_2:+21379944 | None:intergenic |
| ATTGACATCCAATTATGAGT+GGG | 0.611828 | 1_2:-21374597 | Msa0062170:three_prime_UTR |
| AGAATCAATACATTACACGT+TGG | 0.613512 | 1_2:+21374423 | None:intergenic |
| GTAGCTGGTTGCCATCTAGA+GGG | 0.617412 | 1_2:-21374923 | Msa0062170:CDS |
| ACAGATTAATCACTCTACCC+TGG | 0.627705 | 1_2:+21375462 | None:intergenic |
| AGGTTCAGTAAGTGGAGGTG+TGG | 0.646784 | 1_2:+21379805 | None:intergenic |
| AGGGTAGAGTGATTAATCTG+TGG | 0.654684 | 1_2:-21375460 | Msa0062170:five_prime_UTR |
| TTTGCAGGTTCAGTAAGTGG+AGG | 0.655062 | 1_2:+21379800 | None:intergenic |
| ATCCAATTATGAGTGGGCAG+TGG | 0.674574 | 1_2:-21374591 | Msa0062170:three_prime_UTR |
| TATTCAAGGAAAGGGTCGGG+TGG | 0.686000 | 1_2:-21379460 | Msa0062170:five_prime_UTR |
| CGGGTGGTGACAAAAGTGAG+CGG | 0.726098 | 1_2:-21379444 | Msa0062170:five_prime_UTR |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATAATATTATAAATGAAAGT+TGG | - | chr1_2:21377869-21377888 | Msa0062170:intron | 10.0% |
| !! | AATGTTTAAAAAATATAAAG+TGG | + | chr1_2:21378353-21378372 | None:intergenic | 10.0% |
| !! | AAAATAAAAAAGAACATCAA+AGG | + | chr1_2:21374386-21374405 | None:intergenic | 15.0% |
| !! | AAAACATAAATTTAGCAATT+TGG | + | chr1_2:21374773-21374792 | None:intergenic | 15.0% |
| !! | AAAAAAATGATTAGCAAATT+AGG | - | chr1_2:21375177-21375196 | Msa0062170:intron | 15.0% |
| !! | TATTAGAGTAGTTATATATA+AGG | - | chr1_2:21376120-21376139 | Msa0062170:intron | 15.0% |
| !! | TTATCATAGTAACATTAAAA+AGG | - | chr1_2:21376767-21376786 | Msa0062170:intron | 15.0% |
| !! | CATTTATAATATTATGATGT+GGG | + | chr1_2:21377864-21377883 | None:intergenic | 15.0% |
| !! | TCATTTATAATATTATGATG+TGG | + | chr1_2:21377865-21377884 | None:intergenic | 15.0% |
| !!! | AGAGAGAATTAATTTTTTTT+GGG | + | chr1_2:21378595-21378614 | None:intergenic | 15.0% |
| !!! | AAGAGAGAATTAATTTTTTT+TGG | + | chr1_2:21378596-21378615 | None:intergenic | 15.0% |
| !!! | AAAATTAATTCTCTCTTTTT+TGG | - | chr1_2:21378599-21378618 | Msa0062170:intron | 15.0% |
| !!! | AAATTAATTCTCTCTTTTTT+GGG | - | chr1_2:21378600-21378619 | Msa0062170:intron | 15.0% |
| !! | TTACATATAAAAATTTGTCA+TGG | + | chr1_2:21378720-21378739 | None:intergenic | 15.0% |
| !!! | TTGTATAATCATTTTTGTTA+TGG | - | chr1_2:21378934-21378953 | Msa0062170:intron | 15.0% |
| !! | AGTTCACTTAAAAAAAAAAA+AGG | - | chr1_2:21379566-21379585 | Msa0062170:intron | 15.0% |
| !! | AAACTAAAATTGAAAGAAAC+TGG | + | chr1_2:21374740-21374759 | None:intergenic | 20.0% |
| !! | TTTGTTGAGAAAGAAAAATA+TGG | + | chr1_2:21375226-21375245 | None:intergenic | 20.0% |
| !! | TGAACAAAATACCAAATTAT+AGG | + | chr1_2:21375434-21375453 | None:intergenic | 20.0% |
| !!! | TGTGTTTTGATTTTGAATTT+TGG | - | chr1_2:21375514-21375533 | Msa0062170:five_prime_UTR | 20.0% |
| !! | TTTATATTATAGCCAAAATG+AGG | - | chr1_2:21375792-21375811 | Msa0062170:intron | 20.0% |
| !! | TTATATTATAGCCAAAATGA+GGG | - | chr1_2:21375793-21375812 | Msa0062170:intron | 20.0% |
| !!! | ATAGTTTGTAAATCATTTGT+TGG | - | chr1_2:21375979-21375998 | Msa0062170:intron | 20.0% |
| !! | AATTCATATCAATATATACC+AGG | + | chr1_2:21376016-21376035 | None:intergenic | 20.0% |
| !!! | TTTTCCATAAAAAGTATTCA+AGG | + | chr1_2:21376043-21376062 | None:intergenic | 20.0% |
| !! | AAAATAGTTCAAGAAAACAT+AGG | + | chr1_2:21376496-21376515 | None:intergenic | 20.0% |
| !! | ATCACATAAAATTACACTAA+CGG | + | chr1_2:21377040-21377059 | None:intergenic | 20.0% |
| !! | ATGTAAATTCCAGATTAAAT+AGG | + | chr1_2:21377491-21377510 | None:intergenic | 20.0% |
| !! | GATGAATAAAAAATACCAAA+AGG | + | chr1_2:21377599-21377618 | None:intergenic | 20.0% |
| !!! | TTGGTATTTTTTATTCATCA+CGG | - | chr1_2:21377600-21377619 | Msa0062170:intron | 20.0% |
| !!! | GATTTTATATTCTTTGCTTT+TGG | - | chr1_2:21377677-21377696 | Msa0062170:intron | 20.0% |
| !! | AAAATGCATAAAAACTCATA+TGG | + | chr1_2:21377787-21377806 | None:intergenic | 20.0% |
| !!! | TAAAATATTTGTTACCACAT+AGG | + | chr1_2:21377954-21377973 | None:intergenic | 20.0% |
| !!! | TAAAATATTTGTTACCACAT+AGG | + | chr1_2:21377954-21377973 | None:intergenic | 20.0% |
| !!! | TGTTATAATTTGTGATATGA+TGG | - | chr1_2:21378414-21378433 | Msa0062170:five_prime_UTR | 20.0% |
| !!! | TCTTTTTCTTTTGAAGAAAT+AGG | - | chr1_2:21378487-21378506 | Msa0062170:intron | 20.0% |
| !!! | GAGAGAATTAATTTTTTTTG+GGG | + | chr1_2:21378594-21378613 | None:intergenic | 20.0% |
| !!! | TATGTTTACGGATTTTTTTT+TGG | + | chr1_2:21378650-21378669 | None:intergenic | 20.0% |
| !! | ATATAAAAATTTGTCATGGT+AGG | + | chr1_2:21378716-21378735 | None:intergenic | 20.0% |
| !!! | ATATGTAATGAATCTGTTTT+TGG | - | chr1_2:21378732-21378751 | Msa0062170:intron | 20.0% |
| !! | TTTCAACAGAAAATTAAACA+TGG | + | chr1_2:21379100-21379119 | None:intergenic | 20.0% |
| !! | ATAAAATGCATTAGCATAAT+TGG | + | chr1_2:21379628-21379647 | None:intergenic | 20.0% |
| !!! | AATGCATTTTATGACATAAA+AGG | - | chr1_2:21379636-21379655 | Msa0062170:intron | 20.0% |
| !!! | CATATGCATTTTAAATCATA+AGG | - | chr1_2:21379659-21379678 | Msa0062170:intron | 20.0% |
| !!! | TTTTTTACCCTTATTTTGTA+AGG | - | chr1_2:21379824-21379843 | Msa0062170:five_prime_UTR | 20.0% |
| !! | ATGATAACCTTACAAAATAA+GGG | + | chr1_2:21379834-21379853 | None:intergenic | 20.0% |
| !! | TATGATAACCTTACAAAATA+AGG | + | chr1_2:21379835-21379854 | None:intergenic | 20.0% |
| ! | TGATTGTTGTGTAGTAATAT+TGG | - | chr1_2:21374924-21374943 | Msa0062170:CDS | 25.0% |
| ! | CAAATTAGGTAATTATGTGA+AGG | - | chr1_2:21375191-21375210 | Msa0062170:intron | 25.0% |
| ! | AGGCTGAAACAAAAAAAAAA+TGG | + | chr1_2:21375263-21375282 | None:intergenic | 25.0% |
| ! | AAACTAACTAACTCAGAAAA+GGG | + | chr1_2:21375360-21375379 | None:intergenic | 25.0% |
| ! | AAAACTAACTAACTCAGAAA+AGG | + | chr1_2:21375361-21375380 | None:intergenic | 25.0% |
| ! | ATGAACTTTCACCTATAATT+TGG | - | chr1_2:21375420-21375439 | Msa0062170:exon | 25.0% |
| !! | CTTTTAGTACTTTACACATT+TGG | - | chr1_2:21375628-21375647 | Msa0062170:intron | 25.0% |
| ! | ATATCAATATATACCAGGAA+AGG | + | chr1_2:21376011-21376030 | None:intergenic | 25.0% |
| !!! | TTGTCCTTGAATACTTTTTA+TGG | - | chr1_2:21376036-21376055 | Msa0062170:intron | 25.0% |
| ! | GTTATAAAGATTAACCAAAC+AGG | + | chr1_2:21376072-21376091 | None:intergenic | 25.0% |
| !!! | CTAGGAAAGAATACTTTTTA+TGG | - | chr1_2:21376175-21376194 | Msa0062170:intron | 25.0% |
| ! | ACATAGTTTCAAATTGGAAT+TGG | + | chr1_2:21376635-21376654 | None:intergenic | 25.0% |
| ! | TACTTGACATAGTTTCAAAT+TGG | + | chr1_2:21376641-21376660 | None:intergenic | 25.0% |
| !!! | ATTAGCCTTTGTTTTAAATC+TGG | - | chr1_2:21376667-21376686 | Msa0062170:intron | 25.0% |
| !!! | TTAGCCTTTGTTTTAAATCT+GGG | - | chr1_2:21376668-21376687 | Msa0062170:intron | 25.0% |
| ! | TGTCTATATTAAGTAGTTTC+AGG | - | chr1_2:21376841-21376860 | Msa0062170:intron | 25.0% |
| ! | AAATGTAACTGTACTTTGTT+AGG | - | chr1_2:21377012-21377031 | Msa0062170:intron | 25.0% |
| ! | TCACATAAAATTACACTAAC+GGG | + | chr1_2:21377039-21377058 | None:intergenic | 25.0% |
| ! | ACCTTGAAAAAATGAGTTAT+AGG | - | chr1_2:21377113-21377132 | Msa0062170:intron | 25.0% |
| !!! | ACCTATAACTCATTTTTTCA+AGG | + | chr1_2:21377117-21377136 | None:intergenic | 25.0% |
| ! | TAATGATAGCAATCAAGTAA+TGG | + | chr1_2:21377365-21377384 | None:intergenic | 25.0% |
| ! | TAAATTCCAGATTAAATAGG+TGG | + | chr1_2:21377488-21377507 | None:intergenic | 25.0% |
| ! | TAAATTTCAGTCAACATAAC+TGG | + | chr1_2:21377542-21377561 | None:intergenic | 25.0% |
| !! | AGTTATGTTGACTGAAATTT+AGG | - | chr1_2:21377541-21377560 | Msa0062170:intron | 25.0% |
| ! | TAAAATCCTAAAAGCAAGAA+AGG | + | chr1_2:21377664-21377683 | None:intergenic | 25.0% |
| ! | TCTTAATTAAATAACTCCAG+TGG | + | chr1_2:21377732-21377751 | None:intergenic | 25.0% |
| !! | TTATAAATGAAAGTTGGTCA+TGG | - | chr1_2:21377875-21377894 | Msa0062170:intron | 25.0% |
| !! | TATAAATGAAAGTTGGTCAT+GGG | - | chr1_2:21377876-21377895 | Msa0062170:intron | 25.0% |
| !! | TAAGATATTTGTTACCACAT+AGG | + | chr1_2:21378217-21378236 | None:intergenic | 25.0% |
| !!! | TTTTCTTTTGAAGAAATAGG+TGG | - | chr1_2:21378490-21378509 | Msa0062170:intron | 25.0% |
| ! | GAATAAGAAGACTATGTTTA+CGG | + | chr1_2:21378662-21378681 | None:intergenic | 25.0% |
| !! | TTTAATTTCCTGTTTGTGTA+TGG | - | chr1_2:21378684-21378703 | Msa0062170:intron | 25.0% |
| ! | CAACTTCATTTACATTGAAA+CGG | + | chr1_2:21378860-21378879 | None:intergenic | 25.0% |
| !!! | TAATCTGATTGTTTGATTTG+TGG | - | chr1_2:21379021-21379040 | Msa0062170:intron | 25.0% |
| ! | AAATCATGTTCTAACATCAT+TGG | + | chr1_2:21379796-21379815 | None:intergenic | 25.0% |
| !! | AAGGCTTTAAATAAGAGAGA+GGG | + | chr1_2:21374342-21374361 | None:intergenic | 30.0% |
| !! | AAAGGCTTTAAATAAGAGAG+AGG | + | chr1_2:21374343-21374362 | None:intergenic | 30.0% |
| AGGTTGTAATATTCAAGGAA+AGG | - | chr1_2:21374814-21374833 | Msa0062170:CDS | 30.0% | |
| GGTTGTAATATTCAAGGAAA+GGG | - | chr1_2:21374815-21374834 | Msa0062170:CDS | 30.0% | |
| AAACTCCTTTCTATTTGACA+TGG | - | chr1_2:21374951-21374970 | Msa0062170:CDS | 30.0% | |
| AACTCCTTTCTATTTGACAT+GGG | - | chr1_2:21374952-21374971 | Msa0062170:CDS | 30.0% | |
| ! | TTTTCCCATGTCAAATAGAA+AGG | + | chr1_2:21374959-21374978 | None:intergenic | 30.0% |
| TTTGACATGGGAAAATCAAA+TGG | - | chr1_2:21374964-21374983 | Msa0062170:CDS | 30.0% | |
| TTGAAACAAAAACCTTCAAC+TGG | + | chr1_2:21374998-21375017 | None:intergenic | 30.0% | |
| ATGACTAAAAATCCCTCAAT+TGG | + | chr1_2:21375046-21375065 | None:intergenic | 30.0% | |
| GCATGAATGAGTAAAAACAA+AGG | - | chr1_2:21375110-21375129 | Msa0062170:intron | 30.0% | |
| TTGAAGACATAAGCTACTAA+AGG | - | chr1_2:21375322-21375341 | Msa0062170:intron | 30.0% | |
| GAAAGATGTTGATATAGTCA+TGG | + | chr1_2:21375589-21375608 | None:intergenic | 30.0% | |
| TTGGTTAACATTTCTATCCA+TGG | - | chr1_2:21375647-21375666 | Msa0062170:intron | 30.0% | |
| AAAACCATGCAATTTAACCA+TGG | + | chr1_2:21375667-21375686 | None:intergenic | 30.0% | |
| ! | TTAAATTGCATGGTTTTTGC+TGG | - | chr1_2:21375670-21375689 | Msa0062170:intron | 30.0% |
| CATTGCATAAGAACTTCAAT+GGG | - | chr1_2:21375821-21375840 | Msa0062170:intron | 30.0% | |
| TTTCAAGCATTCTCTAAATG+CGG | + | chr1_2:21376273-21376292 | None:intergenic | 30.0% | |
| TTACCATCTGAAAGGAAATT+TGG | + | chr1_2:21376337-21376356 | None:intergenic | 30.0% | |
| ATCATACTTTACCATCTGAA+AGG | + | chr1_2:21376345-21376364 | None:intergenic | 30.0% | |
| TTTCAGATGGTAAAGTATGA+TGG | - | chr1_2:21376344-21376363 | Msa0062170:intron | 30.0% | |
| TTATGTTGATCGATGATTGT+AGG | - | chr1_2:21376392-21376411 | Msa0062170:intron | 30.0% | |
| ! | ATAGTACCTTCTGAAAATCT+CGG | + | chr1_2:21376463-21376482 | None:intergenic | 30.0% |
| TTTCAAGCATTCTCTAAATG+CGG | + | chr1_2:21376273-21376292 | None:intergenic | 30.0% | |
| !!! | TTCAGGTTTTAAGCAAAGTT+TGG | - | chr1_2:21376858-21376877 | Msa0062170:intron | 30.0% |
| !! | ACGTTTAGAATGATACCTTT+TGG | - | chr1_2:21377581-21377600 | Msa0062170:intron | 30.0% |
| TAATTAAATAACTCCAGTGG+AGG | + | chr1_2:21377729-21377748 | None:intergenic | 30.0% | |
| ! | TGCATCCTTTTGATAGATAT+GGG | - | chr1_2:21377926-21377945 | Msa0062170:intron | 30.0% |
| ATCTATCATTATGCAGCAAA+AGG | + | chr1_2:21377989-21378008 | None:intergenic | 30.0% | |
| TGCTGCATAATGATAGATAT+AGG | - | chr1_2:21377991-21378010 | Msa0062170:intron | 30.0% | |
| !! | AAGAGTATCATCTAACCATT+TGG | + | chr1_2:21378569-21378588 | None:intergenic | 30.0% |
| !!! | TAATTCTCTCTTTTTTGGGA+TGG | - | chr1_2:21378604-21378623 | Msa0062170:intron | 30.0% |
| !!! | TGAATCTGTTTTTGGATTGT+AGG | - | chr1_2:21378740-21378759 | Msa0062170:intron | 30.0% |
| CGTTTCAATGTAAATGAAGT+TGG | - | chr1_2:21378858-21378877 | Msa0062170:intron | 30.0% | |
| ! | TATGACATTGATTGATGATC+AGG | - | chr1_2:21378890-21378909 | Msa0062170:intron | 30.0% |
| AATTGACATCCAATTATGAG+TGG | - | chr1_2:21379685-21379704 | Msa0062170:intron | 30.0% | |
| ATTGACATCCAATTATGAGT+GGG | - | chr1_2:21379686-21379705 | Msa0062170:intron | 30.0% | |
| TTTGGATATCAATCAAAAGC+TGG | + | chr1_2:21379764-21379783 | None:intergenic | 30.0% | |
| GATTGATATCCAAATATGAG+TGG | - | chr1_2:21379770-21379789 | Msa0062170:five_prime_UTR | 30.0% | |
| GAATCAATACATTACACGTT+GGG | + | chr1_2:21379862-21379881 | None:intergenic | 30.0% | |
| AGAATCAATACATTACACGT+TGG | + | chr1_2:21379863-21379882 | None:intergenic | 30.0% | |
| GCTATTGAGTGAAACATCAA+AGG | + | chr1_2:21374361-21374380 | None:intergenic | 35.0% | |
| GGACACAATTATGGACAAAA+AGG | + | chr1_2:21374432-21374451 | None:intergenic | 35.0% | |
| CTCTGTTATGAGAAAATCAC+AGG | + | chr1_2:21374588-21374607 | None:intergenic | 35.0% | |
| ! | TGATTTTCTCATAACAGAGC+AGG | - | chr1_2:21374589-21374608 | Msa0062170:three_prime_UTR | 35.0% |
| TGAAAAGAGATTGAGAGAAG+AGG | + | chr1_2:21374623-21374642 | None:intergenic | 35.0% | |
| !! | AGAAACTGGAACTCTAAAAC+TGG | + | chr1_2:21374726-21374745 | None:intergenic | 35.0% |
| TGTGCAGGTTGTAATATTCA+AGG | - | chr1_2:21374809-21374828 | Msa0062170:CDS | 35.0% | |
| GTAATATTCAAGGAAAGGGT+CGG | - | chr1_2:21374819-21374838 | Msa0062170:CDS | 35.0% | |
| TAATATTCAAGGAAAGGGTC+GGG | - | chr1_2:21374820-21374839 | Msa0062170:CDS | 35.0% | |
| CTTCCTTGAATCTTCAATTG+GGG | + | chr1_2:21374875-21374894 | None:intergenic | 35.0% | |
| CCTTCCTTGAATCTTCAATT+GGG | + | chr1_2:21374876-21374895 | None:intergenic | 35.0% | |
| TCCTTCCTTGAATCTTCAAT+TGG | + | chr1_2:21374877-21374896 | None:intergenic | 35.0% | |
| CGATATATCAAACATGTGGT+GGG | + | chr1_2:21375395-21375414 | None:intergenic | 35.0% | |
| GAAGCGATATATCAAACATG+TGG | + | chr1_2:21375399-21375418 | None:intergenic | 35.0% | |
| CTATCCATGGTTAAATTGCA+TGG | - | chr1_2:21375660-21375679 | Msa0062170:intron | 35.0% | |
| GCATTGCATAAGAACTTCAA+TGG | - | chr1_2:21375820-21375839 | Msa0062170:intron | 35.0% | |
| AAATTCCAAATCTCACTCTC+AGG | - | chr1_2:21375903-21375922 | Msa0062170:intron | 35.0% | |
| ! | TTGTTGGTTATTACCTTTCC+TGG | - | chr1_2:21375995-21376014 | Msa0062170:intron | 35.0% |
| ATGGAAAATGTCTACCTGTT+TGG | - | chr1_2:21376055-21376074 | Msa0062170:intron | 35.0% | |
| ! | AAATGTCGTTTGCAATGACT+AGG | - | chr1_2:21376157-21376176 | Msa0062170:intron | 35.0% |
| ATGGAAAATGTCTACCTGTT+TGG | - | chr1_2:21376055-21376074 | Msa0062170:intron | 35.0% | |
| ! | ACCTGTTTGGTTTCATTTGT+TGG | - | chr1_2:21376207-21376226 | Msa0062170:intron | 35.0% |
| ACCAACAAATGAAACCAAAC+AGG | + | chr1_2:21376211-21376230 | None:intergenic | 35.0% | |
| TAAATGCGGATCAAAACTTC+AGG | + | chr1_2:21376259-21376278 | None:intergenic | 35.0% | |
| CATCCAAATTTCCTTTCAGA+TGG | - | chr1_2:21376331-21376350 | Msa0062170:intron | 35.0% | |
| ! | TTTTGCGAAGAATTCGACTA+AGG | - | chr1_2:21376369-21376388 | Msa0062170:intron | 35.0% |
| TGATCGATGATTGTAGGAAT+AGG | - | chr1_2:21376398-21376417 | Msa0062170:intron | 35.0% | |
| TAAATGCGGATCAAAACTTC+AGG | + | chr1_2:21376259-21376278 | None:intergenic | 35.0% | |
| ! | CACTCCCAGATTTAAAACAA+AGG | + | chr1_2:21376675-21376694 | None:intergenic | 35.0% |
| ! | ATGAGTTATAGGTGTTGTCT+TGG | - | chr1_2:21377124-21377143 | Msa0062170:intron | 35.0% |
| ! | TTAGCAGAGACACAGATTTT+GGG | - | chr1_2:21377286-21377305 | Msa0062170:intron | 35.0% |
| TATTGCATACTCAATAGTCC+CGG | - | chr1_2:21377383-21377402 | Msa0062170:intron | 35.0% | |
| TTCCAGATTAAATAGGTGGA+CGG | + | chr1_2:21377484-21377503 | None:intergenic | 35.0% | |
| ! | TTTAGGACTTGAATCCATTC+TGG | - | chr1_2:21377558-21377577 | Msa0062170:intron | 35.0% |
| ATCATTCTAAACGTCCAGAA+TGG | + | chr1_2:21377575-21377594 | None:intergenic | 35.0% | |
| TAAAAGCAAGAAAGGAGGTA+TGG | + | chr1_2:21377656-21377675 | None:intergenic | 35.0% | |
| !! | ATACCTCCTTTCTTGCTTTT+AGG | - | chr1_2:21377655-21377674 | Msa0062170:intron | 35.0% |
| AATCCTAAAAGCAAGAAAGG+AGG | + | chr1_2:21377661-21377680 | None:intergenic | 35.0% | |
| ATCAAAAGGATGCAGCAATA+TGG | + | chr1_2:21377920-21377939 | None:intergenic | 35.0% | |
| ! | CTGCATCCTTTTGATAGATA+TGG | - | chr1_2:21377925-21377944 | Msa0062170:intron | 35.0% |
| AATAACTCCATATTGCTGCA+TGG | - | chr1_2:21378043-21378062 | Msa0062170:intron | 35.0% | |
| GCAGTAGTGATAATAATGAC+AGG | + | chr1_2:21378331-21378350 | None:intergenic | 35.0% | |
| !! | CTTTTGAAGAAATAGGTGGA+CGG | - | chr1_2:21378494-21378513 | Msa0062170:intron | 35.0% |
| TGCATAGTAGATAGACCAAA+TGG | - | chr1_2:21378551-21378570 | Msa0062170:intron | 35.0% | |
| GGTATAAACCATACACAAAC+AGG | + | chr1_2:21378695-21378714 | None:intergenic | 35.0% | |
| TTACGAAATCTGCAGACAAT+TGG | - | chr1_2:21378777-21378796 | Msa0062170:intron | 35.0% | |
| ! | AAAGATTGACTTCCAAATCC+AGG | - | chr1_2:21378803-21378822 | Msa0062170:intron | 35.0% |
| ! | AAGATTGACTTCCAAATCCA+GGG | - | chr1_2:21378804-21378823 | Msa0062170:intron | 35.0% |
| TCATTTACATTGAAACGGTC+AGG | + | chr1_2:21378855-21378874 | None:intergenic | 35.0% | |
| GGTAATTAATAGACTCACGT+AGG | - | chr1_2:21378911-21378930 | Msa0062170:intron | 35.0% | |
| CGTAATGTCTTAAAGTGCAA+AGG | + | chr1_2:21379164-21379183 | None:intergenic | 35.0% | |
| CAGAGATCGTGACATATAAA+CGG | + | chr1_2:21379257-21379276 | None:intergenic | 35.0% | |
| ACAACTCATTATGTGGATGT+GGG | - | chr1_2:21379516-21379535 | Msa0062170:intron | 35.0% | |
| !!! | TGTGGGTTTGGTTGTTTTTA+TGG | - | chr1_2:21379533-21379552 | Msa0062170:intron | 35.0% |
| ATGTGTCAGTGAATTCCTTA+AGG | - | chr1_2:21379951-21379970 | Msa0062170:five_prime_UTR | 35.0% | |
| GTAATTGCTTAGTGCGTGAT+GGG | + | chr1_2:21374552-21374571 | None:intergenic | 40.0% | |
| AGTAATTGCTTAGTGCGTGA+TGG | + | chr1_2:21374553-21374572 | None:intergenic | 40.0% | |
| CTTGCTAAATCTGATTGTGC+AGG | - | chr1_2:21374794-21374813 | Msa0062170:exon | 40.0% | |
| GAATCTTCAATTGGGGTTCA+TGG | + | chr1_2:21374868-21374887 | None:intergenic | 40.0% | |
| GAACCCCAATTGAAGATTCA+AGG | - | chr1_2:21374869-21374888 | Msa0062170:CDS | 40.0% | |
| CCCAATTGAAGATTCAAGGA+AGG | - | chr1_2:21374873-21374892 | Msa0062170:CDS | 40.0% | |
| AAGTCCTGTGTTCCAATTGA+GGG | - | chr1_2:21375031-21375050 | Msa0062170:intron | 40.0% | |
| AAATCCCTCAATTGGAACAC+AGG | + | chr1_2:21375038-21375057 | None:intergenic | 40.0% | |
| GTTGTGGTGACTATTTGTCA+AGG | + | chr1_2:21375283-21375302 | None:intergenic | 40.0% | |
| ! | CTAGTTGTTGTTGCTTGTTG+TGG | + | chr1_2:21375299-21375318 | None:intergenic | 40.0% |
| GCGATATATCAAACATGTGG+TGG | + | chr1_2:21375396-21375415 | None:intergenic | 40.0% | |
| ! | GCAATGCTTTACCCTCATTT+TGG | + | chr1_2:21375807-21375826 | None:intergenic | 40.0% |
| !! | TCAATGGGTGTGATTTTGAC+AGG | - | chr1_2:21375836-21375855 | Msa0062170:intron | 40.0% |
| TTTGACAGGTTCGAGTCTAT+TGG | - | chr1_2:21375850-21375869 | Msa0062170:intron | 40.0% | |
| TTGTACCTGAGAGTGAGATT+TGG | + | chr1_2:21375911-21375930 | None:intergenic | 40.0% | |
| TCGATGATTGTAGGAATAGG+TGG | - | chr1_2:21376401-21376420 | Msa0062170:intron | 40.0% | |
| CGATGATTGTAGGAATAGGT+GGG | - | chr1_2:21376402-21376421 | Msa0062170:intron | 40.0% | |
| CAAATGGATGCTTCCAATCA+AGG | + | chr1_2:21376435-21376454 | None:intergenic | 40.0% | |
| GAAAATCTCGGAGGAACAAA+TGG | + | chr1_2:21376451-21376470 | None:intergenic | 40.0% | |
| ! | AGTTTGGTAGTTTGAGACAC+AGG | - | chr1_2:21376874-21376893 | Msa0062170:intron | 40.0% |
| !!! | AGCTGATGGGTGGTTTTTTT+GGG | - | chr1_2:21377157-21377176 | Msa0062170:intron | 40.0% |
| !!! | TTTTGCTGTTGTATAGCTGC+TGG | - | chr1_2:21377212-21377231 | Msa0062170:intron | 40.0% |
| !! | TTTGCTGTTGTATAGCTGCT+GGG | - | chr1_2:21377213-21377232 | Msa0062170:intron | 40.0% |
| TCAAAAACAGCCCCTATACA+GGG | + | chr1_2:21377250-21377269 | None:intergenic | 40.0% | |
| ! | GTTAGCAGAGACACAGATTT+TGG | - | chr1_2:21377285-21377304 | Msa0062170:intron | 40.0% |
| ATTGCATACTCAATAGTCCC+GGG | - | chr1_2:21377384-21377403 | Msa0062170:intron | 40.0% | |
| AACCGTCCACCTATTTAATC+TGG | - | chr1_2:21377479-21377498 | Msa0062170:intron | 40.0% | |
| CCTCACATTATAGATGTCAC+GGG | + | chr1_2:21377764-21377783 | None:intergenic | 40.0% | |
| GCCTCACATTATAGATGTCA+CGG | + | chr1_2:21377765-21377784 | None:intergenic | 40.0% | |
| AGGTGCCCATATCTATCAAA+AGG | + | chr1_2:21377934-21377953 | None:intergenic | 40.0% | |
| GATAGATATAGGCACCTATG+TGG | - | chr1_2:21378002-21378021 | Msa0062170:intron | 40.0% | |
| ! | ATAGTTTGATGGCAGCTTCA+AGG | + | chr1_2:21378081-21378100 | None:intergenic | 40.0% |
| CACACCTTCACATAGTTTGA+TGG | + | chr1_2:21378092-21378111 | None:intergenic | 40.0% | |
| ACACCTTCACATAGTTTGGA+TGG | + | chr1_2:21378143-21378162 | None:intergenic | 40.0% | |
| ATGCACACCTTCACATAGTT+TGG | + | chr1_2:21378095-21378114 | None:intergenic | 40.0% | |
| ATCTGCCATTATGCAGCAAA+AGG | + | chr1_2:21378187-21378206 | None:intergenic | 40.0% | |
| TTGCTGCATAATGGCAGATA+TGG | - | chr1_2:21378188-21378207 | Msa0062170:intron | 40.0% | |
| TGCTGCATAATGGCAGATAT+GGG | - | chr1_2:21378189-21378208 | Msa0062170:intron | 40.0% | |
| GTAAGCACTATGCAGCAATA+TGG | + | chr1_2:21378251-21378270 | None:intergenic | 40.0% | |
| TAGTTTGGATGGCAGTTTCA+AGG | + | chr1_2:21378279-21378298 | None:intergenic | 40.0% | |
| ACACCTTCACATAGTTTGGA+TGG | + | chr1_2:21378143-21378162 | None:intergenic | 40.0% | |
| ATGCACACCTTCACATAGTT+TGG | + | chr1_2:21378095-21378114 | None:intergenic | 40.0% | |
| TAATCACTCTACCCTGGATT+TGG | + | chr1_2:21378818-21378837 | None:intergenic | 40.0% | |
| ACAGATTAATCACTCTACCC+TGG | + | chr1_2:21378824-21378843 | None:intergenic | 40.0% | |
| AGGGTAGAGTGATTAATCTG+TGG | - | chr1_2:21378823-21378842 | Msa0062170:intron | 40.0% | |
| ! | TGTCATTTGGGAGCTTATTC+TGG | - | chr1_2:21379278-21379297 | Msa0062170:intron | 40.0% |
| ATTTGGGAGCTTATTCTGGT+GGG | - | chr1_2:21379282-21379301 | Msa0062170:intron | 40.0% | |
| AAAAGGCAGCACAAAAACGT+CGG | + | chr1_2:21379445-21379464 | None:intergenic | 40.0% | |
| AGCACAGCAAAACGCAAAAA+AGG | + | chr1_2:21379462-21379481 | None:intergenic | 40.0% | |
| !! | TTTTTGCGTTTTGCTGTGCT+AGG | - | chr1_2:21379462-21379481 | Msa0062170:five_prime_UTR | 40.0% |
| !! | TTTTGCGTTTTGCTGTGCTA+GGG | - | chr1_2:21379463-21379482 | Msa0062170:five_prime_UTR | 40.0% |
| TGTTGCACTGTTAGTGTCTT+CGG | - | chr1_2:21379493-21379512 | Msa0062170:intron | 40.0% | |
| TCTTCGGACAACTCATTATG+TGG | - | chr1_2:21379509-21379528 | Msa0062170:intron | 40.0% | |
| GACAACTCATTATGTGGATG+TGG | - | chr1_2:21379515-21379534 | Msa0062170:intron | 40.0% | |
| TCATTATGTGGATGTGGGTT+TGG | - | chr1_2:21379521-21379540 | Msa0062170:intron | 40.0% | |
| CATCATTGGCCACTCATATT+TGG | + | chr1_2:21379782-21379801 | None:intergenic | 40.0% | |
| GGTGGATGAGGACACAATTA+TGG | + | chr1_2:21374441-21374460 | None:intergenic | 45.0% | |
| TTTGCAGGTTCAGTAAGTGG+AGG | + | chr1_2:21374486-21374505 | None:intergenic | 45.0% | |
| ! | AGGGAGTTTGGGTTAGAGAA+GGG | + | chr1_2:21374651-21374670 | None:intergenic | 45.0% |
| CTCTCTCTCTCTCTCTCATA+TGG | - | chr1_2:21374691-21374710 | Msa0062170:three_prime_UTR | 45.0% | |
| ATGGATGAGCTTCCAGTTGA+AGG | - | chr1_2:21374983-21375002 | Msa0062170:intron | 45.0% | |
| GAAGTCCTGTGTTCCAATTG+AGG | - | chr1_2:21375030-21375049 | Msa0062170:intron | 45.0% | |
| ! | GTTCCTCCGAGATTTTCAGA+AGG | - | chr1_2:21376454-21376473 | Msa0062170:intron | 45.0% |
| ! | GTACCTTCTGAAAATCTCGG+AGG | + | chr1_2:21376460-21376479 | None:intergenic | 45.0% |
| ! | TTGGAGTTTTACGCAGCTGA+TGG | - | chr1_2:21377143-21377162 | Msa0062170:intron | 45.0% |
| ! | TGGAGTTTTACGCAGCTGAT+GGG | - | chr1_2:21377144-21377163 | Msa0062170:intron | 45.0% |
| !!! | CAGCTGATGGGTGGTTTTTT+TGG | - | chr1_2:21377156-21377175 | Msa0062170:intron | 45.0% |
| CAAAAACAGCCCCTATACAG+GGG | + | chr1_2:21377249-21377268 | None:intergenic | 45.0% | |
| CTCAAAAACAGCCCCTATAC+AGG | + | chr1_2:21377251-21377270 | None:intergenic | 45.0% | |
| !!! | CTGTATAGGGGCTGTTTTTG+AGG | - | chr1_2:21377249-21377268 | Msa0062170:intron | 45.0% |
| CCCGTGACATCTATAATGTG+AGG | - | chr1_2:21377761-21377780 | Msa0062170:intron | 45.0% | |
| AGATGACTACCATGCAGCAA+TGG | - | chr1_2:21377838-21377857 | Msa0062170:intron | 45.0% | |
| GATAGATATGGGCACCTATG+TGG | - | chr1_2:21377937-21377956 | Msa0062170:intron | 45.0% | |
| GTAAGCACCATGCAGCAATA+TGG | + | chr1_2:21378053-21378072 | None:intergenic | 45.0% | |
| GCTGCCATCAAACTATGTGA+AGG | - | chr1_2:21378085-21378104 | Msa0062170:intron | 45.0% | |
| CTGCCATCCAAACTATGTGA+AGG | - | chr1_2:21378137-21378156 | Msa0062170:intron | 45.0% | |
| ! | CTATGTGAAGGTGTGCATAG+TGG | - | chr1_2:21378097-21378116 | Msa0062170:intron | 45.0% |
| ! | GGACTCCTTTTGCTGCATAA+TGG | - | chr1_2:21378179-21378198 | Msa0062170:intron | 45.0% |
| CTGCCATCCAAACTATGTGA+AGG | - | chr1_2:21378137-21378156 | Msa0062170:intron | 45.0% | |
| TAGTCGTCCACCTATGTTCA+AGG | + | chr1_2:21378448-21378467 | None:intergenic | 45.0% | |
| GACTATTGAGCATAGGTGGA+CGG | - | chr1_2:21378463-21378482 | Msa0062170:intron | 45.0% | |
| CGAAATCTGCAGACAATTGG+TGG | - | chr1_2:21378780-21378799 | Msa0062170:intron | 45.0% | |
| TCACGATCTCTGCTGTCATT+TGG | - | chr1_2:21379265-21379284 | Msa0062170:intron | 45.0% | |
| ! | CACGATCTCTGCTGTCATTT+GGG | - | chr1_2:21379266-21379285 | Msa0062170:intron | 45.0% |
| CATTTGGGAGCTTATTCTGG+TGG | - | chr1_2:21379281-21379300 | Msa0062170:intron | 45.0% | |
| !! | TTTGCGTTTTGCTGTGCTAG+GGG | - | chr1_2:21379464-21379483 | Msa0062170:five_prime_UTR | 45.0% |
| ATCCAATTATGAGTGGGCAG+TGG | - | chr1_2:21379692-21379711 | Msa0062170:intron | 45.0% | |
| ! | AGTAAGTGGAGGTGTGGAGT+GGG | + | chr1_2:21374475-21374494 | None:intergenic | 50.0% |
| AGGTTCAGTAAGTGGAGGTG+TGG | + | chr1_2:21374481-21374500 | None:intergenic | 50.0% | |
| GGCTTTGCAGGTTCAGTAAG+TGG | + | chr1_2:21374489-21374508 | None:intergenic | 50.0% | |
| ! | GAGGGAGTTTGGGTTAGAGA+AGG | + | chr1_2:21374652-21374671 | None:intergenic | 50.0% |
| GAGAGAGAGAGAGGGAGTTT+GGG | + | chr1_2:21374662-21374681 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGGGAGTT+TGG | + | chr1_2:21374663-21374682 | None:intergenic | 50.0% | |
| GAGAGAGAGAGAGAGAGAGA+GGG | + | chr1_2:21374670-21374689 | None:intergenic | 50.0% | |
| AGAGAGAGAGAGAGAGAGAG+AGG | + | chr1_2:21374669-21374688 | None:intergenic | 50.0% | |
| TATTCAAGGAAAGGGTCGGG+TGG | - | chr1_2:21374823-21374842 | Msa0062170:CDS | 50.0% | |
| ! | AGTTTTACGCAGCTGATGGG+TGG | - | chr1_2:21377147-21377166 | Msa0062170:intron | 50.0% |
| ATCATGTGTCTGACCTCCAC+TGG | - | chr1_2:21377713-21377732 | Msa0062170:intron | 50.0% | |
| GGTGTGCATAGTGGCAGATA+TGG | - | chr1_2:21378158-21378177 | Msa0062170:intron | 50.0% | |
| AACCCTGCCTTGAACATAGG+TGG | - | chr1_2:21378438-21378457 | Msa0062170:intron | 50.0% | |
| GTCCACCTATGTTCAAGGCA+GGG | + | chr1_2:21378443-21378462 | None:intergenic | 50.0% | |
| GGTGGACGACTATTGAGCAT+AGG | - | chr1_2:21378456-21378475 | Msa0062170:intron | 50.0% | |
| GGACGACTATTGAGCATAGG+TGG | - | chr1_2:21378459-21378478 | Msa0062170:intron | 50.0% | |
| TCCTTTGGCAGTTCAGTAGC+TGG | - | chr1_2:21379345-21379364 | Msa0062170:intron | 50.0% | |
| ACCAGCTACTGAACTGCCAA+AGG | + | chr1_2:21379349-21379368 | None:intergenic | 50.0% | |
| AGTAGCTGGTTGCCATCTAG+AGG | - | chr1_2:21379359-21379378 | Msa0062170:intron | 50.0% | |
| GTAGCTGGTTGCCATCTAGA+GGG | - | chr1_2:21379360-21379379 | Msa0062170:intron | 50.0% | |
| GGTCGATGGATGCAGTTGTT+TGG | - | chr1_2:21379381-21379400 | Msa0062170:intron | 50.0% | |
| !! | TTGCGTTTTGCTGTGCTAGG+GGG | - | chr1_2:21379465-21379484 | Msa0062170:five_prime_UTR | 50.0% |
| CACCACTGCCCACTCATAAT+TGG | + | chr1_2:21379697-21379716 | None:intergenic | 50.0% | |
| !! | GATGGCAGACTTGGTGGATG+AGG | + | chr1_2:21374453-21374472 | None:intergenic | 55.0% |
| ! | CAGTAAGTGGAGGTGTGGAG+TGG | + | chr1_2:21374476-21374495 | None:intergenic | 55.0% |
| CTGAACCTGCAAAGCCTGTC+CGG | - | chr1_2:21374493-21374512 | Msa0062170:three_prime_UTR | 55.0% | |
| GCTTTGCAGGTTCGCGTGAT+GGG | + | chr1_2:21374520-21374539 | None:intergenic | 55.0% | |
| !! | TGCTTAGTGCGTGATGGGTC+TGG | + | chr1_2:21374547-21374566 | None:intergenic | 55.0% |
| CGGGTGGTGACAAAAGTGAG+CGG | - | chr1_2:21374839-21374858 | Msa0062170:CDS | 55.0% | |
| GGTGGGACTGCTTCCTTGAT+TGG | - | chr1_2:21376419-21376438 | Msa0062170:intron | 55.0% | |
| !!! | TTTTTGGGTGCTGTCGCAGC+TGG | - | chr1_2:21377172-21377191 | Msa0062170:intron | 55.0% |
| GCTGTTGTATAGCTGCTGGG+CGG | - | chr1_2:21377216-21377235 | Msa0062170:intron | 55.0% | |
| AATAGTCCCGGGCGATAGCA+CGG | - | chr1_2:21377395-21377414 | Msa0062170:intron | 55.0% | |
| TGATGTGGGCCATTGCTGCA+TGG | + | chr1_2:21377850-21377869 | None:intergenic | 55.0% | |
| GGCAGATATGGGCACCTATG+TGG | - | chr1_2:21378200-21378219 | Msa0062170:intron | 55.0% | |
| GGCAACCCTGCCTTGAACAT+AGG | - | chr1_2:21378435-21378454 | Msa0062170:intron | 55.0% | |
| CGTCCACCTATGTTCAAGGC+AGG | + | chr1_2:21378444-21378463 | None:intergenic | 55.0% | |
| ! | TATTCTGGTGGGTGCTGTGC+AGG | - | chr1_2:21379293-21379312 | Msa0062170:intron | 55.0% |
| !! | GTGGGTGCTGTGCAGGTTTT+TGG | - | chr1_2:21379300-21379319 | Msa0062170:intron | 55.0% |
| !! | GGTGCTGTGCAGGTTTTTGG+TGG | - | chr1_2:21379303-21379322 | Msa0062170:intron | 55.0% |
| GTTGCCATCTAGAGGGTCGA+TGG | - | chr1_2:21379367-21379386 | Msa0062170:intron | 55.0% | |
| GCATCCATCGACCCTCTAGA+TGG | + | chr1_2:21379374-21379393 | None:intergenic | 55.0% | |
| GAGTGGGATGGCAGACTTGG+TGG | + | chr1_2:21374459-21374478 | None:intergenic | 60.0% | |
| GTGGAGTGGGATGGCAGACT+TGG | + | chr1_2:21374462-21374481 | None:intergenic | 60.0% | |
| ! | AGTGGAGGTGTGGAGTGGGA+TGG | + | chr1_2:21374471-21374490 | None:intergenic | 60.0% |
| GGCTTTGCAGGTTCGCGTGA+TGG | + | chr1_2:21374521-21374540 | None:intergenic | 60.0% | |
| TGGGTCTGGACAGGCTTTGC+AGG | + | chr1_2:21374533-21374552 | None:intergenic | 60.0% | |
| !! | AGTGCGTGATGGGTCTGGAC+AGG | + | chr1_2:21374542-21374561 | None:intergenic | 60.0% |
| CGGACAGCAGCCCCTGTATA+GGG | - | chr1_2:21377236-21377255 | Msa0062170:intron | 60.0% | |
| GGACAGCAGCCCCTGTATAG+GGG | - | chr1_2:21377237-21377256 | Msa0062170:intron | 60.0% | |
| ATAGTCCCGGGCGATAGCAC+GGG | - | chr1_2:21377396-21377415 | Msa0062170:intron | 60.0% | |
| !! | GTTTTGCTGTGCTAGGGGGC+TGG | - | chr1_2:21379469-21379488 | Msa0062170:five_prime_UTR | 60.0% |
| TGGGTCCGGACAGGCTTTGC+AGG | + | chr1_2:21374501-21374520 | None:intergenic | 65.0% | |
| !! | TTCGCGTGATGGGTCCGGAC+AGG | + | chr1_2:21374510-21374529 | None:intergenic | 65.0% |
| !! | GCAGGTTCGCGTGATGGGTC+CGG | + | chr1_2:21374515-21374534 | None:intergenic | 65.0% |
| GCGGACAGCAGCCCCTGTAT+AGG | - | chr1_2:21377235-21377254 | Msa0062170:intron | 65.0% | |
| TAGTCCCGGGCGATAGCACG+GGG | - | chr1_2:21377397-21377416 | Msa0062170:intron | 65.0% | |
| TCTCGCCCCGTGCTATCGCC+CGG | + | chr1_2:21377405-21377424 | None:intergenic | 70.0% | |
| CTCGCCCCGTGCTATCGCCC+GGG | + | chr1_2:21377404-21377423 | None:intergenic | 75.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr1_2 | gene | 21374331 | 21379974 | 21374331 | ID=Msa0062170;Name=Msa0062170 |
| chr1_2 | mRNA | 21374331 | 21379974 | 21374331 | ID=Msa0062170-mRNA-1;Parent=Msa0062170;Name=Msa0062170-mRNA-1;_AED=0.27;_eAED=0.27;_QI=617|0.8|1|1|0.2|0.33|6|468|72 |
| chr1_2 | exon | 21374331 | 21374990 | 21374331 | ID=Msa0062170-mRNA-1:exon:7948;Parent=Msa0062170-mRNA-1 |
| chr1_2 | exon | 21375394 | 21375543 | 21375394 | ID=Msa0062170-mRNA-1:exon:7947;Parent=Msa0062170-mRNA-1 |
| chr1_2 | exon | 21378381 | 21378447 | 21378381 | ID=Msa0062170-mRNA-1:exon:7946;Parent=Msa0062170-mRNA-1 |
| chr1_2 | exon | 21378962 | 21379025 | 21378962 | ID=Msa0062170-mRNA-1:exon:7945;Parent=Msa0062170-mRNA-1 |
| chr1_2 | exon | 21379407 | 21379489 | 21379407 | ID=Msa0062170-mRNA-1:exon:7944;Parent=Msa0062170-mRNA-1 |
| chr1_2 | exon | 21379695 | 21379974 | 21379695 | ID=Msa0062170-mRNA-1:exon:7943;Parent=Msa0062170-mRNA-1 |
| chr1_2 | five_prime_UTR | 21379695 | 21379974 | 21379695 | ID=Msa0062170-mRNA-1:five_prime_utr;Parent=Msa0062170-mRNA-1 |
| chr1_2 | five_prime_UTR | 21379407 | 21379489 | 21379407 | ID=Msa0062170-mRNA-1:five_prime_utr;Parent=Msa0062170-mRNA-1 |
| chr1_2 | five_prime_UTR | 21378962 | 21379025 | 21378962 | ID=Msa0062170-mRNA-1:five_prime_utr;Parent=Msa0062170-mRNA-1 |
| chr1_2 | five_prime_UTR | 21378381 | 21378447 | 21378381 | ID=Msa0062170-mRNA-1:five_prime_utr;Parent=Msa0062170-mRNA-1 |
| chr1_2 | five_prime_UTR | 21375421 | 21375543 | 21375421 | ID=Msa0062170-mRNA-1:five_prime_utr;Parent=Msa0062170-mRNA-1 |
| chr1_2 | CDS | 21375394 | 21375420 | 21375394 | ID=Msa0062170-mRNA-1:cds;Parent=Msa0062170-mRNA-1 |
| chr1_2 | CDS | 21374799 | 21374990 | 21374799 | ID=Msa0062170-mRNA-1:cds;Parent=Msa0062170-mRNA-1 |
| chr1_2 | three_prime_UTR | 21374331 | 21374798 | 21374331 | ID=Msa0062170-mRNA-1:three_prime_utr;Parent=Msa0062170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
