Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0062170 | Msa0483040 | 0.820614 | 6.250307e-53 | -8.615850e-47 |
| Msa0209080 | Msa0483040 | 0.807989 | 3.860019e-50 | -8.615850e-47 |
| Msa0234270 | Msa0483040 | 0.856626 | 2.833882e-62 | -8.615850e-47 |
| Msa0234320 | Msa0483040 | 0.875437 | 3.082884e-68 | -8.615850e-47 |
| Msa0483040 | Msa0715520 | 0.877142 | 7.964761e-69 | -8.615850e-47 |
| Msa0483040 | Msa0767410 | 0.850465 | 1.669142e-60 | -8.615850e-47 |
| Msa0483040 | Msa0832050 | 0.800190 | 1.619241e-48 | -8.615850e-47 |
| Msa0483040 | Msa0934320 | 0.913101 | 9.083061e-84 | -8.615850e-47 |
| Msa0483040 | Msa1350680 | 0.887481 | 1.374487e-72 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 28 sgRNAs with CRISPR-Local
Find 227 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACATTGTCATGAACAATTTA+TGG | 0.154443 | 3_3:-90781959 | Msa0483040:CDS |
| TGATAGTGGGTTTATTATAT+TGG | 0.202710 | 3_3:-90784113 | Msa0483040:intron |
| CTGATAGAAACTTTAATTAA+AGG | 0.206177 | 3_3:+90781721 | None:intergenic |
| CATGTGTATTCCATATAGTA+TGG | 0.342014 | 3_3:-90781860 | Msa0483040:CDS |
| TATTATATTGGATAGGATAT+CGG | 0.348763 | 3_3:-90784101 | Msa0483040:CDS |
| GTAGTGATTGCCATACTATA+TGG | 0.348814 | 3_3:+90781850 | None:intergenic |
| ATTTATATATCGCTGATGAT+AGG | 0.366047 | 3_3:+90781665 | None:intergenic |
| TAACTGCAGAAGCTTGGTTC+TGG | 0.371129 | 3_3:-90785062 | Msa0483040:intron |
| CATGGTTTAATTTAATGTAA+TGG | 0.394502 | 3_3:-90781791 | Msa0483040:three_prime_UTR |
| ATTAAACCTTTACTATTACA+TGG | 0.417083 | 3_3:+90781753 | None:intergenic |
| CATGATCAAACGTGTGTTTG+TGG | 0.422325 | 3_3:+90785012 | None:intergenic |
| CACAAACACACGTTTGATCA+TGG | 0.456727 | 3_3:-90785011 | Msa0483040:CDS |
| CAAATATTGCATTGAGCCCA+TGG | 0.469774 | 3_3:-90781809 | Msa0483040:three_prime_UTR |
| ATGGAAATACGCTACCAAAC+AGG | 0.473396 | 3_3:-90784992 | Msa0483040:intron |
| CATGAACAATTTATGGTGAA+TGG | 0.476213 | 3_3:-90781952 | Msa0483040:CDS |
| TTAAACCTTTACTATTACAT+GGG | 0.481621 | 3_3:+90781754 | None:intergenic |
| AAACAAAGGACATACCTGTT+TGG | 0.500908 | 3_3:+90784978 | None:intergenic |
| CCATGTTAACTGCAGAAGCT+TGG | 0.501911 | 3_3:-90785068 | Msa0483040:intron |
| CATTACATTAAATTAAACCA+TGG | 0.529688 | 3_3:+90781792 | None:intergenic |
| GTGGGTTTATTATATTGGAT+AGG | 0.534686 | 3_3:-90784108 | Msa0483040:CDS |
| ATCAAACGTGTGTTTGTGGA+TGG | 0.552470 | 3_3:+90785016 | None:intergenic |
| ATTACATTAAATTAAACCAT+GGG | 0.556482 | 3_3:+90781793 | None:intergenic |
| CAATGAGACAAACATACGCT+TGG | 0.574216 | 3_3:+90781597 | None:intergenic |
| AAACAACTCAGGTCTAGAGA+TGG | 0.655516 | 3_3:-90781917 | Msa0483040:CDS |
| GATGGTGCAACTATCAAACT+CGG | 0.656220 | 3_3:-90781899 | Msa0483040:CDS |
| GAAAGCTCTACAAACAACTC+AGG | 0.657413 | 3_3:-90781928 | Msa0483040:CDS |
| ATTCTTACTCAAAGTAGACA+AGG | 0.695412 | 3_3:-90784076 | Msa0483040:intron |
| GGTGCAACTATCAAACTCGG+TGG | 0.708116 | 3_3:-90781896 | Msa0483040:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | TTGCATTTAAAAATAAATAT+GGG | + | chr3_3:90782481-90782500 | None:intergenic | 10.0% |
| !! | TTTGCATTTAAAAATAAATA+TGG | + | chr3_3:90782482-90782501 | None:intergenic | 10.0% |
| !! | TATATTTATTAATTCATATG+TGG | - | chr3_3:90783254-90783273 | Msa0483040:intron | 10.0% |
| !!! | ATTATTTAAGTTTATATAAG+TGG | + | chr3_3:90784669-90784688 | None:intergenic | 10.0% |
| !!! | TTTCAATTTATTTTTCTCTT+TGG | - | chr3_3:90782504-90782523 | Msa0483040:intron | 15.0% |
| !! | AAGTTTGTATTCTAATTATT+TGG | - | chr3_3:90782742-90782761 | Msa0483040:intron | 15.0% |
| !!! | TAATTATCACAATTTTTCTA+TGG | + | chr3_3:90783236-90783255 | None:intergenic | 15.0% |
| !!! | GTAGTTTAATCAAAATTTTA+AGG | + | chr3_3:90783352-90783371 | None:intergenic | 15.0% |
| !!! | TTTCTTCAAATTTGATAATT+TGG | - | chr3_3:90783515-90783534 | Msa0483040:intron | 15.0% |
| !!! | CATGGTTTAATAAATTTTTT+TGG | - | chr3_3:90783545-90783564 | Msa0483040:intron | 15.0% |
| !! | ATGAATAAAAAAATACCAAA+AGG | + | chr3_3:90783685-90783704 | None:intergenic | 15.0% |
| !! | TTTCAACAATAAAAAATAGA+AGG | + | chr3_3:90784134-90784153 | None:intergenic | 15.0% |
| !!! | TTTTATTTTTCATGACTTTT+TGG | - | chr3_3:90784820-90784839 | Msa0483040:intron | 15.0% |
| !!! | ATAAATAATGTTGATTTCTT+GGG | - | chr3_3:90785115-90785134 | Msa0483040:intron | 15.0% |
| !! | ATTACATTAAATTAAACCAT+GGG | + | chr3_3:90785348-90785367 | None:intergenic | 15.0% |
| !!! | ATAGTAAAGGTTTAATTTTA+TGG | - | chr3_3:90785392-90785411 | Msa0483040:intron | 15.0% |
| !! | CAATATAATAAAGAAAGTGA+TGG | + | chr3_3:90782982-90783001 | None:intergenic | 20.0% |
| !!! | TTTTTTATTTCCAATGATAG+TGG | - | chr3_3:90783011-90783030 | Msa0483040:intron | 20.0% |
| !!! | TTTTTATTTCCAATGATAGT+GGG | - | chr3_3:90783012-90783031 | Msa0483040:intron | 20.0% |
| !! | TATTATATTGGATAGGATAT+CGG | - | chr3_3:90783037-90783056 | Msa0483040:intron | 20.0% |
| !! | TTAATTAATTACTGACAGTT+GGG | + | chr3_3:90783176-90783195 | None:intergenic | 20.0% |
| !! | ATTAATTAATTACTGACAGT+TGG | + | chr3_3:90783177-90783196 | None:intergenic | 20.0% |
| !! | TCAGTAATTAATTAATGAGA+AGG | - | chr3_3:90783181-90783200 | Msa0483040:intron | 20.0% |
| !!! | TAAAATATTTGTTACCACAT+AGG | + | chr3_3:90783798-90783817 | None:intergenic | 20.0% |
| !!! | TAAAATATTTGTTACCACAT+AGG | + | chr3_3:90783798-90783817 | None:intergenic | 20.0% |
| !! | ACTCTTAAGAAAAATAGAAA+AGG | + | chr3_3:90783946-90783965 | None:intergenic | 20.0% |
| !!! | TTCTATTTTTCTTAAGAGTT+TGG | - | chr3_3:90783947-90783966 | Msa0483040:intron | 20.0% |
| !!! | AGGAATTTTGCTAATTAAAA+TGG | - | chr3_3:90784207-90784226 | Msa0483040:intron | 20.0% |
| !!! | GGAATTTTGCTAATTAAAAT+GGG | - | chr3_3:90784208-90784227 | Msa0483040:intron | 20.0% |
| !!! | ATTTTTTTCATTCTAATGTG+TGG | - | chr3_3:90784432-90784451 | Msa0483040:intron | 20.0% |
| !! | TTGGTTATATTTAATCATGT+TGG | - | chr3_3:90784790-90784809 | Msa0483040:intron | 20.0% |
| !!! | TTATTTTAATCCAATGCTAT+TGG | - | chr3_3:90784993-90785012 | Msa0483040:CDS | 20.0% |
| !!! | GATAAATAATGTTGATTTCT+TGG | - | chr3_3:90785114-90785133 | Msa0483040:intron | 20.0% |
| !! | CATTACATTAAATTAAACCA+TGG | + | chr3_3:90785349-90785368 | None:intergenic | 20.0% |
| !!! | CATGGTTTAATTTAATGTAA+TGG | - | chr3_3:90785347-90785366 | Msa0483040:intron | 20.0% |
| !! | TTAAACCTTTACTATTACAT+GGG | + | chr3_3:90785387-90785406 | None:intergenic | 20.0% |
| !! | ATTAAACCTTTACTATTACA+TGG | + | chr3_3:90785388-90785407 | None:intergenic | 20.0% |
| !! | CTGATAGAAACTTTAATTAA+AGG | + | chr3_3:90785420-90785439 | None:intergenic | 20.0% |
| !!! | TGTTGTTATTTTTTCTTCCT+TGG | - | chr3_3:90781599-90781618 | Msa0483040:three_prime_UTR | 25.0% |
| ! | TTATGACAAATTGAAATCCA+AGG | + | chr3_3:90781619-90781638 | None:intergenic | 25.0% |
| ! | AAAAATTGAAACCCTAAAAC+TGG | + | chr3_3:90781734-90781753 | None:intergenic | 25.0% |
| !!! | ACATTTTGATACAGAAACAA+AGG | + | chr3_3:90782177-90782196 | None:intergenic | 25.0% |
| !!! | AACTTTTTCCAAAACTTTGA+AGG | + | chr3_3:90782267-90782286 | None:intergenic | 25.0% |
| !!! | TTTTGGAAAAAGTTCTTGAT+GGG | - | chr3_3:90782273-90782292 | Msa0483040:intron | 25.0% |
| ! | ATTCAAAAACTTAGCTACAA+TGG | + | chr3_3:90782405-90782424 | None:intergenic | 25.0% |
| ! | CTTTGAGTAAAATAAACTCT+CGG | + | chr3_3:90782641-90782660 | None:intergenic | 25.0% |
| ! | TCAATAACAATCTCAACTAA+AGG | + | chr3_3:90782691-90782710 | None:intergenic | 25.0% |
| ! | GCAATAATTTGAAGAATCAT+TGG | + | chr3_3:90782793-90782812 | None:intergenic | 25.0% |
| ! | TTCTTCAAATTATTGCTCAT+TGG | - | chr3_3:90782797-90782816 | Msa0483040:intron | 25.0% |
| ! | TATAATAAACCCACTATCAT+TGG | + | chr3_3:90783024-90783043 | None:intergenic | 25.0% |
| !!! | TGATAGTGGGTTTATTATAT+TGG | - | chr3_3:90783025-90783044 | Msa0483040:intron | 25.0% |
| !!! | TTAATTAATGAGAAGGTGTT+AGG | - | chr3_3:90783188-90783207 | Msa0483040:intron | 25.0% |
| !!! | TAATTAATGAGAAGGTGTTA+GGG | - | chr3_3:90783189-90783208 | Msa0483040:intron | 25.0% |
| ! | AAAACTAACACAACATACAA+AGG | + | chr3_3:90783374-90783393 | None:intergenic | 25.0% |
| ! | TGATAATTTGGTCATTTACA+TGG | - | chr3_3:90783527-90783546 | Msa0483040:intron | 25.0% |
| ! | TAAATTTCAGTCAACATAAC+TGG | + | chr3_3:90783628-90783647 | None:intergenic | 25.0% |
| !! | AGTTATGTTGACTGAAATTT+AGG | - | chr3_3:90783627-90783646 | Msa0483040:intron | 25.0% |
| !!! | AACTTTAGAATGATACCTTT+TGG | - | chr3_3:90783667-90783686 | Msa0483040:intron | 25.0% |
| !! | TTTTTATTCATCATGTGCAT+AGG | - | chr3_3:90783694-90783713 | Msa0483040:intron | 25.0% |
| ! | TAAAATAACAAAAAACGCAG+TGG | + | chr3_3:90784078-90784097 | None:intergenic | 25.0% |
| !! | TTTTGCTAATTAAAATGGGA+AGG | - | chr3_3:90784212-90784231 | Msa0483040:intron | 25.0% |
| ! | TTTGCTAATTAAAATGGGAA+GGG | - | chr3_3:90784213-90784232 | Msa0483040:intron | 25.0% |
| ! | AACTAACTCATGTAGAATTT+AGG | - | chr3_3:90784327-90784346 | Msa0483040:intron | 25.0% |
| ! | AGAATGAAAAAAATTCTACC+TGG | + | chr3_3:90784426-90784445 | None:intergenic | 25.0% |
| ! | TAAATAATGACACATGATCT+TGG | - | chr3_3:90784681-90784700 | Msa0483040:intron | 25.0% |
| ! | TAGCATTAATCATATCATAG+GGG | + | chr3_3:90784736-90784755 | None:intergenic | 25.0% |
| ! | GTAGCATTAATCATATCATA+GGG | + | chr3_3:90784737-90784756 | None:intergenic | 25.0% |
| ! | TGTAGCATTAATCATATCAT+AGG | + | chr3_3:90784738-90784757 | None:intergenic | 25.0% |
| ! | TTTAAAGAAATGAAGGAGTA+AGG | + | chr3_3:90784875-90784894 | None:intergenic | 25.0% |
| ! | ACGTGAATTTAAAGAAATGA+AGG | + | chr3_3:90784882-90784901 | None:intergenic | 25.0% |
| ! | GAAACAAAGAGTAAATAACA+TGG | + | chr3_3:90784961-90784980 | None:intergenic | 25.0% |
| !!! | TTTTTTCTTTCCAATAGCAT+TGG | + | chr3_3:90785006-90785025 | None:intergenic | 25.0% |
| ! | AAGTCTGTATCTAATGAATT+AGG | - | chr3_3:90785025-90785044 | Msa0483040:CDS | 25.0% |
| !! | TGGAAATGTCTGTTAAATTT+TGG | - | chr3_3:90785145-90785164 | Msa0483040:intron | 25.0% |
| ! | ACATTGTCATGAACAATTTA+TGG | - | chr3_3:90785179-90785198 | Msa0483040:intron | 25.0% |
| ! | ATTTATATATCGCTGATGAT+AGG | + | chr3_3:90785476-90785495 | None:intergenic | 25.0% |
| !!! | ATTTTTTCAAGACAAAGAGT+AGG | + | chr3_3:90785516-90785535 | None:intergenic | 25.0% |
| ! | TACTCTTTGTCTTGAAAAAA+TGG | - | chr3_3:90785515-90785534 | Msa0483040:intron | 25.0% |
| GTGAAGGGAAAATTGAAAAT+GGG | + | chr3_3:90781672-90781691 | None:intergenic | 30.0% | |
| TGTGAAGGGAAAATTGAAAA+TGG | + | chr3_3:90781673-90781692 | None:intergenic | 30.0% | |
| !!! | GGTTTTGTTTTCCAGTTTTA+GGG | - | chr3_3:90781720-90781739 | Msa0483040:three_prime_UTR | 30.0% |
| CACAATCAGATTCAACAAAA+AGG | + | chr3_3:90781801-90781820 | None:intergenic | 30.0% | |
| !! | AGATTTAAAACAGAAGTGCT+TGG | + | chr3_3:90781948-90781967 | None:intergenic | 30.0% |
| ! | CAAAATGTGTTTTGCAGATT+CGG | - | chr3_3:90782189-90782208 | Msa0483040:intron | 30.0% |
| !!! | GTTTTGGAAAAAGTTCTTGA+TGG | - | chr3_3:90782272-90782291 | Msa0483040:intron | 30.0% |
| TGCAAAAGAGAAAAATCACA+GGG | + | chr3_3:90782602-90782621 | None:intergenic | 30.0% | |
| TTGCAAAAGAGAAAAATCAC+AGG | + | chr3_3:90782603-90782622 | None:intergenic | 30.0% | |
| AGTAAAATAAACTCTCGGAA+TGG | + | chr3_3:90782636-90782655 | None:intergenic | 30.0% | |
| CAGCAAGTTATTTAACATCA+GGG | - | chr3_3:90782935-90782954 | Msa0483040:intron | 30.0% | |
| AGCAAGTTATTTAACATCAG+GGG | - | chr3_3:90782936-90782955 | Msa0483040:intron | 30.0% | |
| !! | ATAAAGAAAGTGATGGACAT+GGG | + | chr3_3:90782975-90782994 | None:intergenic | 30.0% |
| !! | AATAAAGAAAGTGATGGACA+TGG | + | chr3_3:90782976-90782995 | None:intergenic | 30.0% |
| GTGGGTTTATTATATTGGAT+AGG | - | chr3_3:90783030-90783049 | Msa0483040:intron | 30.0% | |
| ATTCTTACTCAAAGTAGACA+AGG | - | chr3_3:90783062-90783081 | Msa0483040:intron | 30.0% | |
| TAATATCTCATGTACGAAAG+TGG | + | chr3_3:90783281-90783300 | None:intergenic | 30.0% | |
| ! | ATGAGTATAGTGTAGTGTTT+TGG | - | chr3_3:90783575-90783594 | Msa0483040:intron | 30.0% |
| !!! | TTTAGGTTTTGAATCCATTC+TGG | - | chr3_3:90783644-90783663 | Msa0483040:intron | 30.0% |
| !! | ATCATTCTAAAGTTCCAGAA+TGG | + | chr3_3:90783661-90783680 | None:intergenic | 30.0% |
| ATCTATCATTATGCAGCAAA+AGG | + | chr3_3:90783768-90783787 | None:intergenic | 30.0% | |
| TTGCTGCATAATGATAGATA+TGG | - | chr3_3:90783769-90783788 | Msa0483040:intron | 30.0% | |
| TGCTGCATAATGATAGATAT+GGG | - | chr3_3:90783770-90783789 | Msa0483040:intron | 30.0% | |
| ATCTATCATTATGCAGCAAA+AGG | + | chr3_3:90783768-90783787 | None:intergenic | 30.0% | |
| !!! | GTTATTTCTAGCATCAGTTT+TGG | - | chr3_3:90784558-90784577 | Msa0483040:intron | 30.0% |
| AACAGAAAAGGTTACAACAA+AGG | + | chr3_3:90784623-90784642 | None:intergenic | 30.0% | |
| ! | GTGAACAATATGAAGTATCA+TGG | - | chr3_3:90784710-90784729 | Msa0483040:intron | 30.0% |
| TTTCACACAAGAAAGATTGA+TGG | - | chr3_3:90784765-90784784 | Msa0483040:intron | 30.0% | |
| ATGCACACAAAAAGAAATGA+AGG | + | chr3_3:90784907-90784926 | None:intergenic | 30.0% | |
| GAGTAAATAACATGGAAATG+AGG | + | chr3_3:90784953-90784972 | None:intergenic | 30.0% | |
| AATTAGGATACATCTGATGT+TGG | - | chr3_3:90785041-90785060 | Msa0483040:CDS | 30.0% | |
| !! | ATGTCTGTTAAATTTTGGTC+AGG | - | chr3_3:90785150-90785169 | Msa0483040:intron | 30.0% |
| CATGAACAATTTATGGTGAA+TGG | - | chr3_3:90785186-90785205 | Msa0483040:intron | 30.0% | |
| CATGTGTATTCCATATAGTA+TGG | - | chr3_3:90785278-90785297 | Msa0483040:intron | 30.0% | |
| ! | TTTTGCCCATGTAATAGTAA+AGG | - | chr3_3:90785379-90785398 | Msa0483040:intron | 30.0% |
| AAAACCGTAAAAGAGAGAGA+GGG | + | chr3_3:90781706-90781725 | None:intergenic | 35.0% | |
| !!! | CGGTTTTGTTTTCCAGTTTT+AGG | - | chr3_3:90781719-90781738 | Msa0483040:three_prime_UTR | 35.0% |
| TTTGTTGAATCTGATTGTGC+AGG | - | chr3_3:90781802-90781821 | Msa0483040:three_prime_UTR | 35.0% | |
| !! | TGCTTGGATATTTTGGGAAA+AGG | + | chr3_3:90781932-90781951 | None:intergenic | 35.0% |
| !!! | CAGAAGTGCTTGGATATTTT+GGG | + | chr3_3:90781938-90781957 | None:intergenic | 35.0% |
| !!! | ACAGAAGTGCTTGGATATTT+TGG | + | chr3_3:90781939-90781958 | None:intergenic | 35.0% |
| CAGTGTGTTTATCAATTCTG+TGG | - | chr3_3:90782040-90782059 | Msa0483040:intron | 35.0% | |
| AAACAAAGGACATACCTGTT+TGG | + | chr3_3:90782163-90782182 | None:intergenic | 35.0% | |
| ! | GAAGTTCTCCTTCAAAGTTT+TGG | - | chr3_3:90782256-90782275 | Msa0483040:intron | 35.0% |
| ! | TTTTTCTCTTTGGCAGAAGT+TGG | - | chr3_3:90782514-90782533 | Msa0483040:intron | 35.0% |
| ! | CAGAATAGACAGAAGTACAT+TGG | + | chr3_3:90782564-90782583 | None:intergenic | 35.0% |
| ATGTACTTCTGTCTATTCTG+AGG | - | chr3_3:90782564-90782583 | Msa0483040:intron | 35.0% | |
| AGAGAAAAATCACAGGGTAA+AGG | + | chr3_3:90782596-90782615 | None:intergenic | 35.0% | |
| TGAACTTTACTTGAACTGAG+TGG | + | chr3_3:90782827-90782846 | None:intergenic | 35.0% | |
| ! | GAAAATTGATAGCAGAAGCA+TGG | - | chr3_3:90782910-90782929 | Msa0483040:intron | 35.0% |
| GCAGCAAGTTATTTAACATC+AGG | - | chr3_3:90782934-90782953 | Msa0483040:intron | 35.0% | |
| !! | TAAAGAAAGTGATGGACATG+GGG | + | chr3_3:90782974-90782993 | None:intergenic | 35.0% |
| TTACTCAAAGTAGACAAGGT+GGG | - | chr3_3:90783066-90783085 | Msa0483040:intron | 35.0% | |
| TCATTCATGTGATCTTTGTG+TGG | - | chr3_3:90783420-90783439 | Msa0483040:intron | 35.0% | |
| CATATGAGAGTTGTTGTCAT+AGG | - | chr3_3:90783476-90783495 | Msa0483040:intron | 35.0% | |
| !!! | AGTGTAGTGTTTTGGTTGAT+TGG | - | chr3_3:90783583-90783602 | Msa0483040:intron | 35.0% |
| !!! | TTTTAAAACCACTACCATGC+TGG | - | chr3_3:90783987-90784006 | Msa0483040:intron | 35.0% |
| !! | TTGATTCTAAAACTCCAGCA+TGG | + | chr3_3:90784004-90784023 | None:intergenic | 35.0% |
| GACATCTTTGTAGTCAAAGA+CGG | - | chr3_3:90784041-90784060 | Msa0483040:intron | 35.0% | |
| ! | ATGTTGGCTAATTGATGCTT+CGG | + | chr3_3:90784243-90784262 | None:intergenic | 35.0% |
| GCATCAATTAGCCAACATAT+TGG | - | chr3_3:90784245-90784264 | Msa0483040:intron | 35.0% | |
| TGCAAAGTACACCAATATGT+TGG | + | chr3_3:90784259-90784278 | None:intergenic | 35.0% | |
| TAGGAAAGAAGACATGATGT+TGG | - | chr3_3:90784380-90784399 | Msa0483040:intron | 35.0% | |
| AGGAAAGAAGACATGATGTT+GGG | - | chr3_3:90784381-90784400 | Msa0483040:intron | 35.0% | |
| TTAGTTCATGCTTCAATACC+AGG | - | chr3_3:90784405-90784424 | Msa0483040:intron | 35.0% | |
| TGGATGTGTATTGAATGGTA+TGG | - | chr3_3:90784461-90784480 | Msa0483040:intron | 35.0% | |
| GGATGTGTATTGAATGGTAT+GGG | - | chr3_3:90784462-90784481 | Msa0483040:intron | 35.0% | |
| AGTTTATATAAGTGGATGCC+TGG | + | chr3_3:90784661-90784680 | None:intergenic | 35.0% | |
| ACAAGAAAGATTGATGGAGT+TGG | - | chr3_3:90784771-90784790 | Msa0483040:intron | 35.0% | |
| TTTATCTCAGAGTCTGTAGT+AGG | + | chr3_3:90785100-90785119 | None:intergenic | 35.0% | |
| GTAGTGATTGCCATACTATA+TGG | + | chr3_3:90785291-90785310 | None:intergenic | 35.0% | |
| ! | ACAAGTTTTCTACGCATTTG+AGG | - | chr3_3:90785441-90785460 | Msa0483040:intron | 35.0% |
| CAAAACCGTAAAAGAGAGAG+AGG | + | chr3_3:90781707-90781726 | None:intergenic | 40.0% | |
| AGGTTGTCAGATTCAAGGAA+TGG | - | chr3_3:90781822-90781841 | Msa0483040:three_prime_UTR | 40.0% | |
| GGTTGTCAGATTCAAGGAAT+GGG | - | chr3_3:90781823-90781842 | Msa0483040:three_prime_UTR | 40.0% | |
| ATCAAACGTGTGTTTGTGGA+TGG | + | chr3_3:90782125-90782144 | None:intergenic | 40.0% | |
| CATGATCAAACGTGTGTTTG+TGG | + | chr3_3:90782129-90782148 | None:intergenic | 40.0% | |
| CACAAACACACGTTTGATCA+TGG | - | chr3_3:90782127-90782146 | Msa0483040:intron | 40.0% | |
| ATGGAAATACGCTACCAAAC+AGG | - | chr3_3:90782146-90782165 | Msa0483040:intron | 40.0% | |
| TTCCAACATGCTTCTGCTAT+CGG | + | chr3_3:90782893-90782912 | None:intergenic | 40.0% | |
| CTTACTCAAAGTAGACAAGG+TGG | - | chr3_3:90783065-90783084 | Msa0483040:intron | 40.0% | |
| GTGATTGGAACAAACTTGGA+AGG | + | chr3_3:90783154-90783173 | None:intergenic | 40.0% | |
| TTGGGTGATTGGAACAAACT+TGG | + | chr3_3:90783158-90783177 | None:intergenic | 40.0% | |
| ATTACTGACAGTTGGGTGAT+TGG | + | chr3_3:90783169-90783188 | None:intergenic | 40.0% | |
| TGGAATCTTCACATAGTCGT+GGG | + | chr3_3:90783216-90783235 | None:intergenic | 40.0% | |
| ATGGAATCTTCACATAGTCG+TGG | + | chr3_3:90783217-90783236 | None:intergenic | 40.0% | |
| ! | TTTGTGTGGTTGACTTCTAC+AGG | - | chr3_3:90783434-90783453 | Msa0483040:intron | 40.0% |
| AAAGGAGAAGAAAGGAGGTA+TGG | + | chr3_3:90783750-90783769 | None:intergenic | 40.0% | |
| ATGCAGCAAAAGGAGAAGAA+AGG | + | chr3_3:90783758-90783777 | None:intergenic | 40.0% | |
| GATAGATATGAGCACCTATG+TGG | - | chr3_3:90783846-90783865 | Msa0483040:intron | 40.0% | |
| TGTCTCATGATCTCTCAGTT+TGG | - | chr3_3:90784350-90784369 | Msa0483040:intron | 40.0% | |
| ACGCATGGATGTGTATTGAA+TGG | - | chr3_3:90784456-90784475 | Msa0483040:intron | 40.0% | |
| !! | CTAGCATCAGTTTTGGCATA+AGG | - | chr3_3:90784565-90784584 | Msa0483040:intron | 40.0% |
| !! | ATCAGTTTTGGCATAAGGTG+TGG | - | chr3_3:90784570-90784589 | Msa0483040:intron | 40.0% |
| !! | TCAGTTTTGGCATAAGGTGT+GGG | - | chr3_3:90784571-90784590 | Msa0483040:intron | 40.0% |
| GGTTGGAACTCAAACAGAAA+AGG | + | chr3_3:90784635-90784654 | None:intergenic | 40.0% | |
| TATATAAGTGGATGCCTGGA+GGG | + | chr3_3:90784657-90784676 | None:intergenic | 40.0% | |
| TTATATAAGTGGATGCCTGG+AGG | + | chr3_3:90784658-90784677 | None:intergenic | 40.0% | |
| GAAAGCTCTACAAACAACTC+AGG | - | chr3_3:90785210-90785229 | Msa0483040:intron | 40.0% | |
| AAACAACTCAGGTCTAGAGA+TGG | - | chr3_3:90785221-90785240 | Msa0483040:intron | 40.0% | |
| GATGGTGCAACTATCAAACT+CGG | - | chr3_3:90785239-90785258 | Msa0483040:intron | 40.0% | |
| CAAATATTGCATTGAGCCCA+TGG | - | chr3_3:90785329-90785348 | Msa0483040:intron | 40.0% | |
| CAATGAGACAAACATACGCT+TGG | + | chr3_3:90785544-90785563 | None:intergenic | 40.0% | |
| AGGGAGCTTAGGTTTGTGAA+GGG | + | chr3_3:90781687-90781706 | None:intergenic | 45.0% | |
| AAAAGAGAGAGAGGGAGCTT+AGG | + | chr3_3:90781698-90781717 | None:intergenic | 45.0% | |
| ! | AGCTCCCTCTCTCTCTTTTA+CGG | - | chr3_3:90781699-90781718 | Msa0483040:three_prime_UTR | 45.0% |
| TGTGCAGGTTGTCAGATTCA+AGG | - | chr3_3:90781817-90781836 | Msa0483040:three_prime_UTR | 45.0% | |
| GTCAGATTCAAGGAATGGGT+CGG | - | chr3_3:90781827-90781846 | Msa0483040:exon | 45.0% | |
| ATTCAAGGAATGGGTCGGTT+GGG | - | chr3_3:90781832-90781851 | Msa0483040:exon | 45.0% | |
| CCAAGCTTCTGCAGTTAACA+TGG | + | chr3_3:90782073-90782092 | None:intergenic | 45.0% | |
| CCATGTTAACTGCAGAAGCT+TGG | - | chr3_3:90782070-90782089 | Msa0483040:intron | 45.0% | |
| TAACTGCAGAAGCTTGGTTC+TGG | - | chr3_3:90782076-90782095 | Msa0483040:intron | 45.0% | |
| !! | TCTGGAGCTTTTGTAGATCG+CGG | - | chr3_3:90782094-90782113 | Msa0483040:intron | 45.0% |
| TTCTCTTTGGCAGAAGTTGG+TGG | - | chr3_3:90782517-90782536 | Msa0483040:intron | 45.0% | |
| CAAACTTGGAAGGCAGTACA+TGG | + | chr3_3:90783144-90783163 | None:intergenic | 45.0% | |
| ! | TTAAGGCTGAAAGCACACAC+TGG | + | chr3_3:90783335-90783354 | None:intergenic | 45.0% |
| CAGCAAAAGGAGAAGAAAGG+AGG | + | chr3_3:90783755-90783774 | None:intergenic | 45.0% | |
| GATAGATATGGGCACCTATG+TGG | - | chr3_3:90783781-90783800 | Msa0483040:intron | 45.0% | |
| CTAAAACTCCAGCATGGTAG+TGG | + | chr3_3:90783998-90784017 | None:intergenic | 45.0% | |
| ACAAAAAACGCAGTGGCATC+AGG | + | chr3_3:90784071-90784090 | None:intergenic | 45.0% | |
| ! | AGTTTTCTCCTTTGCACAGC+AGG | - | chr3_3:90784187-90784206 | Msa0483040:intron | 45.0% |
| GCAAAATTCCTGCTGTGCAA+AGG | + | chr3_3:90784198-90784217 | None:intergenic | 45.0% | |
| ATTCTAATGTGTGGCACGCA+TGG | - | chr3_3:90784441-90784460 | Msa0483040:intron | 45.0% | |
| !! | CAGTTTTGGCATAAGGTGTG+GGG | - | chr3_3:90784572-90784591 | Msa0483040:intron | 45.0% |
| ! | TAAGGAGTTAAGTTGCCCTG+TGG | - | chr3_3:90784597-90784616 | Msa0483040:intron | 45.0% |
| AGGTTACAACAAAGGCCACA+GGG | + | chr3_3:90784615-90784634 | None:intergenic | 45.0% | |
| AAGGTTACAACAAAGGCCAC+AGG | + | chr3_3:90784616-90784635 | None:intergenic | 45.0% | |
| ATATAAGTGGATGCCTGGAG+GGG | + | chr3_3:90784656-90784675 | None:intergenic | 45.0% | |
| CATCTGATGTTGGTGTGCAA+AGG | - | chr3_3:90785051-90785070 | Msa0483040:CDS | 45.0% | |
| TTGATTTCTTGGGACGTGCT+TGG | - | chr3_3:90785125-90785144 | Msa0483040:intron | 45.0% | |
| GAGGGAGCTTAGGTTTGTGA+AGG | + | chr3_3:90781688-90781707 | None:intergenic | 50.0% | |
| GATTCAAGGAATGGGTCGGT+TGG | - | chr3_3:90781831-90781850 | Msa0483040:exon | 50.0% | |
| TTGGGAGAAGGAACAACGCT+GGG | - | chr3_3:90781850-90781869 | Msa0483040:CDS | 50.0% | |
| !! | GATGGTGGATCAGGACTTAG+AGG | - | chr3_3:90781874-90781893 | Msa0483040:CDS | 50.0% |
| !! | TTTGGCAGAAGTTGGTGGTG+AGG | - | chr3_3:90782522-90782541 | Msa0483040:intron | 50.0% |
| ! | GTCCGATAGCAGAAGCATGT+TGG | - | chr3_3:90782888-90782907 | Msa0483040:intron | 50.0% |
| CTTGGAAGGCAGTACATGGA+AGG | + | chr3_3:90783140-90783159 | None:intergenic | 50.0% | |
| ! | CTCTCAGTTTGGTAGCAGCT+AGG | - | chr3_3:90784361-90784380 | Msa0483040:intron | 50.0% |
| GGTGCAACTATCAAACTCGG+TGG | - | chr3_3:90785242-90785261 | Msa0483040:intron | 50.0% | |
| GTTGGGAGAAGGAACAACGC+TGG | - | chr3_3:90781849-90781868 | Msa0483040:CDS | 55.0% | |
| GAAGGAACAACGCTGGGAGA+TGG | - | chr3_3:90781856-90781875 | Msa0483040:CDS | 55.0% | |
| GGTGGATCAGGACTTAGAGG+TGG | - | chr3_3:90781877-90781896 | Msa0483040:CDS | 55.0% | |
| GAGGTGGCAACTGCAACAAC+TGG | - | chr3_3:90781893-90781912 | Msa0483040:CDS | 55.0% | |
| GGCATAAGGTGTGGGGCTTA+AGG | - | chr3_3:90784579-90784598 | Msa0483040:intron | 55.0% | |
| ! | GTTTGAGTTCCAACCCCTCC+AGG | - | chr3_3:90784640-90784659 | Msa0483040:intron | 55.0% |
| GGAATGGGTCGGTTGGGAGA+AGG | - | chr3_3:90781838-90781857 | Msa0483040:exon | 60.0% | |
| GGAACAACGCTGGGAGATGG+TGG | - | chr3_3:90781859-90781878 | Msa0483040:CDS | 60.0% | |
| !! | ACGCTGGGAGATGGTGGATC+AGG | - | chr3_3:90781865-90781884 | Msa0483040:CDS | 60.0% |
| AAGTGGATGCCTGGAGGGGT+TGG | + | chr3_3:90784652-90784671 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 90781554 | 90785606 | 90781554 | ID=Msa0483040;Name=Msa0483040 |
| chr3_3 | mRNA | 90781554 | 90785606 | 90781554 | ID=Msa0483040-mRNA-1;Parent=Msa0483040;Name=Msa0483040-mRNA-1;_AED=0.42;_eAED=0.42;_QI=0|0|0.5|1|0|0.5|4|289|96 |
| chr3_3 | exon | 90781554 | 90781988 | 90781554 | ID=Msa0483040-mRNA-1:exon:26509;Parent=Msa0483040-mRNA-1 |
| chr3_3 | exon | 90784077 | 90784129 | 90784077 | ID=Msa0483040-mRNA-1:exon:26508;Parent=Msa0483040-mRNA-1 |
| chr3_3 | exon | 90784993 | 90785075 | 90784993 | ID=Msa0483040-mRNA-1:exon:26507;Parent=Msa0483040-mRNA-1 |
| chr3_3 | exon | 90785598 | 90785606 | 90785598 | ID=Msa0483040-mRNA-1:exon:26506;Parent=Msa0483040-mRNA-1 |
| chr3_3 | CDS | 90785598 | 90785606 | 90785598 | ID=Msa0483040-mRNA-1:cds;Parent=Msa0483040-mRNA-1 |
| chr3_3 | CDS | 90784993 | 90785075 | 90784993 | ID=Msa0483040-mRNA-1:cds;Parent=Msa0483040-mRNA-1 |
| chr3_3 | CDS | 90784077 | 90784129 | 90784077 | ID=Msa0483040-mRNA-1:cds;Parent=Msa0483040-mRNA-1 |
| chr3_3 | CDS | 90781843 | 90781988 | 90781843 | ID=Msa0483040-mRNA-1:cds;Parent=Msa0483040-mRNA-1 |
| chr3_3 | three_prime_UTR | 90781554 | 90781842 | 90781554 | ID=Msa0483040-mRNA-1:three_prime_utr;Parent=Msa0483040-mRNA-1 |
| Gene Sequence |
| Protein sequence |
