AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0720340

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720340 MtrunA17_Chr5g0411051 94.091 220 13 0 1 220 1 220 1.06e-139 391
Msa0720340 MtrunA17_Chr7g0262061 50.000 118 58 1 109 225 212 329 2.95e-38 136
Msa0720340 MtrunA17_Chr4g0063891 61.702 94 36 0 125 218 165 258 3.12e-38 134
Msa0720340 MtrunA17_Chr7g0262541 51.961 102 49 0 122 223 237 338 2.39e-35 129
Msa0720340 MtrunA17_Chr2g0333081 49.091 110 56 0 119 228 136 245 7.17e-34 122
Msa0720340 MtrunA17_Chr1g0186111 39.683 126 65 2 110 224 250 375 5.32e-27 106
Msa0720340 MtrunA17_Chr1g0186111 37.956 137 75 2 97 224 95 230 1.19e-23 97.8
Msa0720340 MtrunA17_Chr3g0104511 34.314 102 67 0 117 218 394 495 4.93e-16 76.6
Msa0720340 MtrunA17_Chr4g0003301 49.180 61 31 0 153 213 10 70 2.60e-15 68.6
Msa0720340 MtrunA17_Chr5g0436741 31.250 112 76 1 108 218 283 394 1.65e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0720340 AT4G17940.1 43.629 259 96 8 1 220 1 248 9.14e-53 172
Msa0720340 AT5G20190.1 47.423 97 51 0 125 221 159 255 1.16e-30 115
Msa0720340 AT4G32340.1 53.000 100 46 1 122 220 110 209 4.12e-30 112
Msa0720340 AT1G80130.1 48.980 98 50 0 124 221 167 264 1.85e-26 104
Msa0720340 AT1G04530.1 44.898 98 53 1 122 219 121 217 2.48e-23 96.3
Msa0720340 AT1G04530.1 30.400 125 67 2 118 222 186 310 4.09e-15 73.6
Msa0720340 AT1G07280.3 35.714 98 63 0 121 218 434 531 4.62e-15 74.3
Msa0720340 AT1G07280.1 35.714 98 63 0 121 218 434 531 4.62e-15 74.3
Msa0720340 AT1G07280.2 35.714 98 63 0 121 218 434 531 4.62e-15 74.3
Msa0720340 AT2G29670.1 35.354 99 64 0 120 218 418 516 1.38e-14 72.8
Msa0720340 AT2G29670.2 35.354 99 64 0 120 218 418 516 1.38e-14 72.8

Find 108 sgRNAs with CRISPR-Local

Find 318 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TCAAAGTTCCAGAGTAATTT+TGG 0.118521 5_1:-16281675 Msa0720340:three_prime_UTR
AATATCAATTCACTGTATTT+TGG 0.161174 5_1:-16282630 Msa0720340:three_prime_UTR
CGCTTTACGGAAAGTTGATA+TGG 0.203106 5_1:-16283320 Msa0720340:CDS
GCAGATTTCTTTGCTAAGTT+AGG 0.269206 5_1:+16281893 None:intergenic
GGTGAATTGCTTTCGCTTTA+CGG 0.272624 5_1:-16283333 Msa0720340:CDS
TGTTCATGCTGTTCTCATTC+AGG 0.287012 5_1:+16281802 None:intergenic
GTGAGAGCAGAGGAATATTA+TGG 0.317988 5_1:-16283384 Msa0720340:CDS
ATATTATGGAAGAGCGATTC+TGG 0.340015 5_1:-16283370 Msa0720340:CDS
CAGATTTCTTTGCTAAGTTA+GGG 0.360395 5_1:+16281894 None:intergenic
GAAAGCAATTCACCATCTTC+AGG 0.375992 5_1:+16283342 None:intergenic
CCGGTTGAGGATACCGGATT+CGG 0.388537 5_1:-16283669 Msa0720340:CDS
TGGAAATGCAGGGAAACTTT+TGG 0.390187 5_1:+16283813 None:intergenic
GGAAGCGGAGGAAGAGGAGG+AGG 0.390683 5_1:-16282689 Msa0720340:CDS
ACCGGATTCGGCGGAGGAGG+CGG 0.393617 5_1:-16283657 Msa0720340:CDS
TCCGCCTCCTCCGCCGAATC+CGG 0.405182 5_1:+16283656 None:intergenic
CTAATATGCAGCACGGTGTT+GGG 0.405986 5_1:-16282733 Msa0720340:intron
TCTAATATGCAGCACGGTGT+TGG 0.410479 5_1:-16282734 Msa0720340:intron
CTCTCCATCAACCTCATATC+CGG 0.423368 5_1:+16281761 None:intergenic
GAGTGGACCGGGTTTAGAAC+CGG 0.424474 5_1:+16283906 None:intergenic
TACAGAGTTGGTTTGTTACT+CGG 0.429610 5_1:+16281730 None:intergenic
CGACGAGTGGAGGAGTAACC+TGG 0.439306 5_1:-16281930 Msa0720340:three_prime_UTR
GAGGATGAAGTGGTGGTTAA+CGG 0.444648 5_1:-16282670 Msa0720340:CDS
CGAGTTGAACCGGAGTGGAC+CGG 0.448414 5_1:+16283894 None:intergenic
GATACCGGATTCGGCGGAGG+AGG 0.455567 5_1:-16283660 Msa0720340:CDS
AGCTCTCAGGAACAAAGTTC+CGG 0.457316 5_1:-16281993 Msa0720340:three_prime_UTR
GATTCCGTCGGAATGTTTGT+CGG 0.460131 5_1:+16283785 None:intergenic
TGTGCAGGTAGAGAAGAATA+TGG 0.460938 5_1:-16283406 Msa0720340:intron
GGAAGAGGAGGAGGATGAAG+TGG 0.463731 5_1:-16282680 Msa0720340:CDS
TGAATGAAGCTTGGCGGGAG+AGG 0.465208 5_1:+16283865 None:intergenic
GTTTAGAACCGGGACGGAAC+CGG 0.466497 5_1:+16283917 None:intergenic
TTCATGTTGCTCCTGATGAT+AGG 0.466904 5_1:-16283248 Msa0720340:intron
GAGGGAGGTTCGAGTTGAAC+CGG 0.467848 5_1:+16283884 None:intergenic
TCCCGCCAAGCTTCATTCAC+TGG 0.472339 5_1:-16283861 Msa0720340:CDS
AAGAGAGGACGAAGATCATC+AGG 0.473365 5_1:-16281956 Msa0720340:three_prime_UTR
TTCTTTGCTAAGTTAGGGGC+AGG 0.474823 5_1:+16281899 None:intergenic
TTCCGTCCCGGTTCTAAACC+CGG 0.476767 5_1:-16283913 Msa0720340:CDS
GCTTTACGGAAAGTTGATAT+GGG 0.476855 5_1:-16283319 Msa0720340:CDS
ATTTAAATCCAAAATTACTC+TGG 0.477497 5_1:+16281667 None:intergenic
TAGGGGCAGGTGCTGATGCC+AGG 0.479967 5_1:+16281912 None:intergenic
AATGTATAATACCTATCATC+AGG 0.482652 5_1:+16283237 None:intergenic
CCGAATCCGGTATCCTCAAC+CGG 0.486419 5_1:+16283669 None:intergenic
TCTCAGAATCTAAATCGAAT+CGG 0.489329 5_1:-16283705 Msa0720340:CDS
ACAGTCAACACCGGTGGAAA+CGG 0.493901 5_1:-16283615 Msa0720340:CDS
CCTTTCACCACCGTTTCCAC+CGG 0.494768 5_1:+16283605 None:intergenic
CCTCCGCTTCCCACATGAAG+TGG 0.499492 5_1:+16282701 None:intergenic
GGTTGCCTTCGCGAAGGGTG+TGG 0.503812 5_1:-16281865 Msa0720340:three_prime_UTR
CACAATGGTTGCCTTCGCGA+AGG 0.503819 5_1:-16281871 Msa0720340:three_prime_UTR
CGCCAGTGAATGAAGCTTGG+CGG 0.508090 5_1:+16283859 None:intergenic
GCCAGTGAATGAAGCTTGGC+GGG 0.509193 5_1:+16283860 None:intergenic
GAATGAAGCTTGGCGGGAGA+GGG 0.521311 5_1:+16283866 None:intergenic
GAGTTGAACCGGAGTGGACC+GGG 0.521646 5_1:+16283895 None:intergenic
GTGGGAAGCGGAGGAAGAGG+AGG 0.525243 5_1:-16282692 Msa0720340:CDS
AGAACTTCTCTAATGCGAAC+CGG 0.526010 5_1:-16283936 Msa0720340:CDS
AATGCGAACCGGTTCCGTCC+CGG 0.526633 5_1:-16283925 Msa0720340:CDS
AGAGGAGGAGGATGAAGTGG+TGG 0.531822 5_1:-16282677 Msa0720340:CDS
TGCCCACTTCATGTGGGAAG+CGG 0.532394 5_1:-16282704 Msa0720340:CDS
ATGATACCTTGATGAAATGC+CGG 0.536781 5_1:-16281780 Msa0720340:three_prime_UTR
TTGATGAAATGCCGGATATG+AGG 0.539363 5_1:-16281772 Msa0720340:three_prime_UTR
CTTATCAATTATCAATCAGA+AGG 0.540302 5_1:-16281595 Msa0720340:three_prime_UTR
CATGTGGGAAGCGGAGGAAG+AGG 0.547034 5_1:-16282695 Msa0720340:CDS
GAGGATACCGGATTCGGCGG+AGG 0.548110 5_1:-16283663 Msa0720340:CDS
GGTGGTGAAAGGATGAAAAT+CGG 0.548568 5_1:-16283594 Msa0720340:CDS
GAAGAATATGGTGAGAGCAG+AGG 0.550363 5_1:-16283394 Msa0720340:CDS
GATCATCAGGCGGCGACGAG+TGG 0.553314 5_1:-16281943 Msa0720340:three_prime_UTR
ACAGAAGAGACTAAGCTCTC+AGG 0.554427 5_1:-16282006 Msa0720340:three_prime_UTR
CATCAGGCGGCGACGAGTGG+AGG 0.556446 5_1:-16281940 Msa0720340:three_prime_UTR
TGTAGCTGTCTTAATCTATG+AGG 0.556571 5_1:+16281620 None:intergenic
AATGCCGGATATGAGGTTGA+TGG 0.557705 5_1:-16281765 Msa0720340:three_prime_UTR
GAAAAGCTGAAATTCTTGAT+CGG 0.563410 5_1:+16283726 None:intergenic
TAAAGATCTGTTGATTCCGT+CGG 0.563817 5_1:+16283773 None:intergenic
CTCCGCTTCCCACATGAAGT+GGG 0.568198 5_1:+16282702 None:intergenic
ACAATGGTTGCCTTCGCGAA+GGG 0.570601 5_1:-16281870 Msa0720340:three_prime_UTR
TGAAGCTTGGCGGGAGAGGG+AGG 0.572384 5_1:+16283869 None:intergenic
CGGAATGTTTGTCGGTGGAG+TGG 0.574481 5_1:+16283793 None:intergenic
GATCCTATGCCCACTTCATG+TGG 0.575020 5_1:-16282711 Msa0720340:CDS
TGTCGGTGGAGTGGAAATGC+AGG 0.576329 5_1:+16283802 None:intergenic
CTCCGCCACACCCTTCGCGA+AGG 0.578050 5_1:+16281860 None:intergenic
TGCCTTCGCGAAGGGTGTGG+CGG 0.579561 5_1:-16281862 Msa0720340:three_prime_UTR
CTCAGCAAAAGCGCGTCGGT+AGG 0.580945 5_1:+16283540 None:intergenic
CCGGTGGAAACGGTGGTGAA+AGG 0.583383 5_1:-16283605 Msa0720340:CDS
CCACTTCATGTGGGAAGCGG+AGG 0.584056 5_1:-16282701 Msa0720340:CDS
TCCGTCGGAATGTTTGTCGG+TGG 0.584409 5_1:+16283788 None:intergenic
TCATATCCGGCATTTCATCA+AGG 0.590360 5_1:+16281774 None:intergenic
TCTTTCTATAGCTACAGAGT+TGG 0.590850 5_1:+16281718 None:intergenic
CTCTTGCGAAATGATGCTAC+CGG 0.598861 5_1:+16281974 None:intergenic
ATTCTGGCGAATCCTGAAGA+TGG 0.602694 5_1:-16283354 Msa0720340:CDS
TTCCCACATGAAGTGGGCAT+AGG 0.605173 5_1:+16282708 None:intergenic
ATCCTATGCCCACTTCATGT+GGG 0.612131 5_1:-16282710 Msa0720340:CDS
GTTCTAAACCCGGTCCACTC+CGG 0.618867 5_1:-16283903 Msa0720340:CDS
ATTTCTCAGCAAAAGCGCGT+CGG 0.621203 5_1:+16283536 None:intergenic
AGTGGACCGGGTTTAGAACC+GGG 0.630183 5_1:+16283907 None:intergenic
TGTCGCCAGTGAATGAAGCT+TGG 0.631457 5_1:+16283856 None:intergenic
GTAGCATCATTTCGCAAGAG+AGG 0.632520 5_1:-16281971 Msa0720340:three_prime_UTR
GTCGGTGGAGTGGAAATGCA+GGG 0.643205 5_1:+16283803 None:intergenic
GTCAACACCGGTGGAAACGG+TGG 0.643860 5_1:-16283612 Msa0720340:CDS
GGAGGAGGCGGATTCGATCA+CGG 0.644648 5_1:-16283645 Msa0720340:CDS
AGATTTCTTTGCTAAGTTAG+GGG 0.650893 5_1:+16281895 None:intergenic
GACCGGGTTTAGAACCGGGA+CGG 0.654441 5_1:+16283911 None:intergenic
GTTGAGGATACCGGATTCGG+CGG 0.656017 5_1:-16283666 Msa0720340:CDS
AGGTTCGAGTTGAACCGGAG+TGG 0.664029 5_1:+16283889 None:intergenic
TCCACCGACAAACATTCCGA+CGG 0.679368 5_1:-16283789 Msa0720340:CDS
TTATCAATTATCAATCAGAA+GGG 0.680288 5_1:-16281594 Msa0720340:three_prime_UTR
TAGCAAAGAAATCTGCACAA+TGG 0.684548 5_1:-16281886 Msa0720340:three_prime_UTR
GATGTAACAGTCAACACCGG+TGG 0.692588 5_1:-16283621 Msa0720340:CDS
AGAGGACGAAGATCATCAGG+CGG 0.699360 5_1:-16281953 Msa0720340:three_prime_UTR
TTACGGGAAATATCTTCACG+AGG 0.714068 5_1:-16283514 Msa0720340:intron
GATGAAGTGGTGGTTAACGG+CGG 0.725938 5_1:-16282667 Msa0720340:CDS
GGTGATGTAACAGTCAACAC+CGG 0.748533 5_1:-16283624 Msa0720340:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTCTAATAATTTTTATT+TGG - chr5_1:16282775-16282794 Msa0720340:intron 10.0%
!!! AATCTCTAATAATTTTTATT+TGG - chr5_1:16282775-16282794 Msa0720340:intron 10.0%
!! TTCCAAAAATAGAAATAAAA+AGG - chr5_1:16282078-16282097 Msa0720340:intron 15.0%
!!! TTCCTTTTTATTTCTATTTT+TGG + chr5_1:16282083-16282102 None:intergenic 15.0%
!! TGATCATTAATTACAATTAA+TGG + chr5_1:16282347-16282366 None:intergenic 15.0%
!! TTGTGTAAAATTATTTACAT+TGG - chr5_1:16282715-16282734 Msa0720340:CDS 15.0%
!!! ATTAAACGTGTTTTTTTTTT+TGG - chr5_1:16283469-16283488 Msa0720340:intron 15.0%
!!! TGAATTATAACTATTTTTCA+CGG + chr5_1:16283843-16283862 None:intergenic 15.0%
!! TTCCAAAAATAGAAATAAAA+AGG - chr5_1:16282078-16282097 Msa0720340:intron 15.0%
!!! TTCCTTTTTATTTCTATTTT+TGG + chr5_1:16282083-16282102 None:intergenic 15.0%
!! TGATCATTAATTACAATTAA+TGG + chr5_1:16282347-16282366 None:intergenic 15.0%
!! TTGTGTAAAATTATTTACAT+TGG - chr5_1:16282715-16282734 Msa0720340:CDS 15.0%
!!! ATTAAACGTGTTTTTTTTTT+TGG - chr5_1:16283469-16283488 Msa0720340:intron 15.0%
!!! TGAATTATAACTATTTTTCA+CGG + chr5_1:16283843-16283862 None:intergenic 15.0%
!! AATTAATGATCATGATAGTT+TGG - chr5_1:16282355-16282374 Msa0720340:intron 20.0%
!!! CAATAAATCTTTTGATAGAT+GGG + chr5_1:16282432-16282451 None:intergenic 20.0%
!!! ACAATAAATCTTTTGATAGA+TGG + chr5_1:16282433-16282452 None:intergenic 20.0%
!! TTTATTGTCAAATCAACTAA+TGG - chr5_1:16282445-16282464 Msa0720340:intron 20.0%
!! TAATGATTATGATTAAGTGA+TGG + chr5_1:16282612-16282631 None:intergenic 20.0%
!!! AATATCAATTCACTGTATTT+TGG - chr5_1:16282905-16282924 Msa0720340:intron 20.0%
!! AATACATATGAGTATCTAAA+AGG - chr5_1:16283392-16283411 Msa0720340:CDS 20.0%
!! ATACATATGAGTATCTAAAA+GGG - chr5_1:16283393-16283412 Msa0720340:CDS 20.0%
!! ATTTAAATCCAAAATTACTC+TGG + chr5_1:16283871-16283890 None:intergenic 20.0%
!! TTATCAATTATCAATCAGAA+GGG - chr5_1:16283941-16283960 Msa0720340:CDS 20.0%
!! AATTAATGATCATGATAGTT+TGG - chr5_1:16282355-16282374 Msa0720340:intron 20.0%
!!! CAATAAATCTTTTGATAGAT+GGG + chr5_1:16282432-16282451 None:intergenic 20.0%
!!! ACAATAAATCTTTTGATAGA+TGG + chr5_1:16282433-16282452 None:intergenic 20.0%
!! TTTATTGTCAAATCAACTAA+TGG - chr5_1:16282445-16282464 Msa0720340:intron 20.0%
!! TAATGATTATGATTAAGTGA+TGG + chr5_1:16282612-16282631 None:intergenic 20.0%
!!! AATATCAATTCACTGTATTT+TGG - chr5_1:16282905-16282924 Msa0720340:intron 20.0%
!! AATACATATGAGTATCTAAA+AGG - chr5_1:16283392-16283411 Msa0720340:CDS 20.0%
!! ATACATATGAGTATCTAAAA+GGG - chr5_1:16283393-16283412 Msa0720340:CDS 20.0%
!! ATTTAAATCCAAAATTACTC+TGG + chr5_1:16283871-16283890 None:intergenic 20.0%
!! TTATCAATTATCAATCAGAA+GGG - chr5_1:16283941-16283960 Msa0720340:CDS 20.0%
!!! AGTTTATTTTGTAGAAAGAG+TGG + chr5_1:16281576-16281595 None:intergenic 25.0%
! AATGTATAATACCTATCATC+AGG + chr5_1:16282301-16282320 None:intergenic 25.0%
! GTGAATTTAATTAGTATGCA+TGG - chr5_1:16282387-16282406 Msa0720340:intron 25.0%
! ATTTAATTAGTATGCATGGA+CGG - chr5_1:16282391-16282410 Msa0720340:intron 25.0%
!! ATGTGTGTGTAAATATTTTC+CGG - chr5_1:16282576-16282595 Msa0720340:intron 25.0%
! CTTATCAATTATCAATCAGA+AGG - chr5_1:16283940-16283959 Msa0720340:CDS 25.0%
!!! AGTTTATTTTGTAGAAAGAG+TGG + chr5_1:16281576-16281595 None:intergenic 25.0%
! AATGTATAATACCTATCATC+AGG + chr5_1:16282301-16282320 None:intergenic 25.0%
! GTGAATTTAATTAGTATGCA+TGG - chr5_1:16282387-16282406 Msa0720340:intron 25.0%
! ATTTAATTAGTATGCATGGA+CGG - chr5_1:16282391-16282410 Msa0720340:intron 25.0%
!! ATGTGTGTGTAAATATTTTC+CGG - chr5_1:16282576-16282595 Msa0720340:intron 25.0%
! CTTATCAATTATCAATCAGA+AGG - chr5_1:16283940-16283959 Msa0720340:CDS 25.0%
GAAAAGCTGAAATTCTTGAT+CGG + chr5_1:16281812-16281831 None:intergenic 30.0%
TCTCAGAATCTAAATCGAAT+CGG - chr5_1:16281830-16281849 Msa0720340:three_prime_UTR 30.0%
!! ATTTGAACTTTGATTTGTGC+AGG - chr5_1:16282114-16282133 Msa0720340:intron 30.0%
CACAATTGACAAATCACAAT+CGG + chr5_1:16282700-16282719 None:intergenic 30.0%
TATTATTTCGTCAAACTCAC+TGG + chr5_1:16282935-16282954 None:intergenic 30.0%
AGTCCAAATGTTTACTTAAC+CGG - chr5_1:16283037-16283056 Msa0720340:intron 30.0%
AGAAGTAACATTATGATCTC+CGG + chr5_1:16283059-16283078 None:intergenic 30.0%
GGTTATGTGACAACAATAAA+TGG - chr5_1:16283164-16283183 Msa0720340:intron 30.0%
AGTCTCTCTCTTCAATTATA+GGG + chr5_1:16283242-16283261 None:intergenic 30.0%
AGATCAGAAACAAAACAAGT+AGG + chr5_1:16283292-16283311 None:intergenic 30.0%
!!! TTGTTTTGTTTCTGATCTAC+TGG - chr5_1:16283294-16283313 Msa0720340:CDS 30.0%
! TCTCTTTTCCAACGATTTTA+GGG - chr5_1:16283431-16283450 Msa0720340:intron 30.0%
AGATTTCTTTGCTAAGTTAG+GGG + chr5_1:16283643-16283662 None:intergenic 30.0%
CAGATTTCTTTGCTAAGTTA+GGG + chr5_1:16283644-16283663 None:intergenic 30.0%
! TCAAAGTTCCAGAGTAATTT+TGG - chr5_1:16283860-16283879 Msa0720340:CDS 30.0%
!! GTTCAATTTTAGAAAAGGAG+AGG + chr5_1:16283967-16283986 None:intergenic 30.0%
GAAAAGCTGAAATTCTTGAT+CGG + chr5_1:16281812-16281831 None:intergenic 30.0%
TCTCAGAATCTAAATCGAAT+CGG - chr5_1:16281830-16281849 Msa0720340:three_prime_UTR 30.0%
!! ATTTGAACTTTGATTTGTGC+AGG - chr5_1:16282114-16282133 Msa0720340:intron 30.0%
CACAATTGACAAATCACAAT+CGG + chr5_1:16282700-16282719 None:intergenic 30.0%
TATTATTTCGTCAAACTCAC+TGG + chr5_1:16282935-16282954 None:intergenic 30.0%
AGTCCAAATGTTTACTTAAC+CGG - chr5_1:16283037-16283056 Msa0720340:intron 30.0%
AGAAGTAACATTATGATCTC+CGG + chr5_1:16283059-16283078 None:intergenic 30.0%
GGTTATGTGACAACAATAAA+TGG - chr5_1:16283164-16283183 Msa0720340:intron 30.0%
AGTCTCTCTCTTCAATTATA+GGG + chr5_1:16283242-16283261 None:intergenic 30.0%
AGATCAGAAACAAAACAAGT+AGG + chr5_1:16283292-16283311 None:intergenic 30.0%
!!! TTGTTTTGTTTCTGATCTAC+TGG - chr5_1:16283294-16283313 Msa0720340:CDS 30.0%
! TCTCTTTTCCAACGATTTTA+GGG - chr5_1:16283431-16283450 Msa0720340:intron 30.0%
AGATTTCTTTGCTAAGTTAG+GGG + chr5_1:16283643-16283662 None:intergenic 30.0%
CAGATTTCTTTGCTAAGTTA+GGG + chr5_1:16283644-16283663 None:intergenic 30.0%
! TCAAAGTTCCAGAGTAATTT+TGG - chr5_1:16283860-16283879 Msa0720340:CDS 30.0%
!! GTTCAATTTTAGAAAAGGAG+AGG + chr5_1:16283967-16283986 None:intergenic 30.0%
!! AAACTTTTGGTGATTGAACG+CGG + chr5_1:16281712-16281731 None:intergenic 35.0%
!! TAAAGATCTGTTGATTCCGT+CGG + chr5_1:16281765-16281784 None:intergenic 35.0%
! AATCGGATCTCAATCTTTTC+CGG - chr5_1:16281847-16281866 Msa0720340:three_prime_UTR 35.0%
ATATTATGGAAGAGCGATTC+TGG - chr5_1:16282165-16282184 Msa0720340:intron 35.0%
!! GCTTTACGGAAAGTTGATAT+GGG - chr5_1:16282216-16282235 Msa0720340:intron 35.0%
! TACACATACATGTGATAACG+AGG + chr5_1:16282504-16282523 None:intergenic 35.0%
AAGTGATGGTTATGTTTAGC+CGG + chr5_1:16282598-16282617 None:intergenic 35.0%
! AATCGTTTTACACATGTTCG+TGG - chr5_1:16282641-16282660 Msa0720340:exon 35.0%
! ATCGTTTTACACATGTTCGT+GGG - chr5_1:16282642-16282661 Msa0720340:exon 35.0%
! TGGTTTTCTAATATGCAGCA+CGG - chr5_1:16282795-16282814 Msa0720340:intron 35.0%
TCTCCGGTTAAGTAAACATT+TGG + chr5_1:16283043-16283062 None:intergenic 35.0%
TTCAGAATGTCGAATGTGAA+AGG + chr5_1:16283102-16283121 None:intergenic 35.0%
CTAATTGCAACGAATGTGAA+AGG - chr5_1:16283143-16283162 Msa0720340:intron 35.0%
CTCTCTTCAATTATAGGGTA+GGG + chr5_1:16283237-16283256 None:intergenic 35.0%
TCTCTCTTCAATTATAGGGT+AGG + chr5_1:16283238-16283257 None:intergenic 35.0%
CAGTCTCTCTCTTCAATTAT+AGG + chr5_1:16283243-16283262 None:intergenic 35.0%
! CTCTCTTTTCCAACGATTTT+AGG - chr5_1:16283430-16283449 Msa0720340:intron 35.0%
CTATTCATCCCTAAAATCGT+TGG + chr5_1:16283442-16283461 None:intergenic 35.0%
GCAGATTTCTTTGCTAAGTT+AGG + chr5_1:16283645-16283664 None:intergenic 35.0%
TAGCAAAGAAATCTGCACAA+TGG - chr5_1:16283649-16283668 Msa0720340:CDS 35.0%
ATGATACCTTGATGAAATGC+CGG - chr5_1:16283755-16283774 Msa0720340:CDS 35.0%
!! TACAGAGTTGGTTTGTTACT+CGG + chr5_1:16283808-16283827 None:intergenic 35.0%
TCTTTCTATAGCTACAGAGT+TGG + chr5_1:16283820-16283839 None:intergenic 35.0%
TGTAGCTGTCTTAATCTATG+AGG + chr5_1:16283918-16283937 None:intergenic 35.0%
!! AAACTTTTGGTGATTGAACG+CGG + chr5_1:16281712-16281731 None:intergenic 35.0%
!! TAAAGATCTGTTGATTCCGT+CGG + chr5_1:16281765-16281784 None:intergenic 35.0%
! AATCGGATCTCAATCTTTTC+CGG - chr5_1:16281847-16281866 Msa0720340:three_prime_UTR 35.0%
ATATTATGGAAGAGCGATTC+TGG - chr5_1:16282165-16282184 Msa0720340:intron 35.0%
!! GCTTTACGGAAAGTTGATAT+GGG - chr5_1:16282216-16282235 Msa0720340:intron 35.0%
! TACACATACATGTGATAACG+AGG + chr5_1:16282504-16282523 None:intergenic 35.0%
AAGTGATGGTTATGTTTAGC+CGG + chr5_1:16282598-16282617 None:intergenic 35.0%
! AATCGTTTTACACATGTTCG+TGG - chr5_1:16282641-16282660 Msa0720340:exon 35.0%
! ATCGTTTTACACATGTTCGT+GGG - chr5_1:16282642-16282661 Msa0720340:exon 35.0%
! TGGTTTTCTAATATGCAGCA+CGG - chr5_1:16282795-16282814 Msa0720340:intron 35.0%
TCTCCGGTTAAGTAAACATT+TGG + chr5_1:16283043-16283062 None:intergenic 35.0%
TTCAGAATGTCGAATGTGAA+AGG + chr5_1:16283102-16283121 None:intergenic 35.0%
CTAATTGCAACGAATGTGAA+AGG - chr5_1:16283143-16283162 Msa0720340:intron 35.0%
CTCTCTTCAATTATAGGGTA+GGG + chr5_1:16283237-16283256 None:intergenic 35.0%
TCTCTCTTCAATTATAGGGT+AGG + chr5_1:16283238-16283257 None:intergenic 35.0%
CAGTCTCTCTCTTCAATTAT+AGG + chr5_1:16283243-16283262 None:intergenic 35.0%
! CTCTCTTTTCCAACGATTTT+AGG - chr5_1:16283430-16283449 Msa0720340:intron 35.0%
CTATTCATCCCTAAAATCGT+TGG + chr5_1:16283442-16283461 None:intergenic 35.0%
GCAGATTTCTTTGCTAAGTT+AGG + chr5_1:16283645-16283664 None:intergenic 35.0%
TAGCAAAGAAATCTGCACAA+TGG - chr5_1:16283649-16283668 Msa0720340:CDS 35.0%
ATGATACCTTGATGAAATGC+CGG - chr5_1:16283755-16283774 Msa0720340:CDS 35.0%
!! TACAGAGTTGGTTTGTTACT+CGG + chr5_1:16283808-16283827 None:intergenic 35.0%
TCTTTCTATAGCTACAGAGT+TGG + chr5_1:16283820-16283839 None:intergenic 35.0%
TGTAGCTGTCTTAATCTATG+AGG + chr5_1:16283918-16283937 None:intergenic 35.0%
AGAACTTCTCTAATGCGAAC+CGG - chr5_1:16281599-16281618 Msa0720340:three_prime_UTR 40.0%
! TGGAAATGCAGGGAAACTTT+TGG + chr5_1:16281725-16281744 None:intergenic 40.0%
! ATCTCAATCTTTTCCGGTTG+AGG - chr5_1:16281853-16281872 Msa0720340:three_prime_UTR 40.0%
GGTGGTGAAAGGATGAAAAT+CGG - chr5_1:16281941-16281960 Msa0720340:three_prime_UTR 40.0%
! GCGCTTTTGCTGAGAAATTA+CGG - chr5_1:16282004-16282023 Msa0720340:three_prime_UTR 40.0%
! CGCTTTTGCTGAGAAATTAC+GGG - chr5_1:16282005-16282024 Msa0720340:three_prime_UTR 40.0%
TTACGGGAAATATCTTCACG+AGG - chr5_1:16282021-16282040 Msa0720340:three_prime_UTR 40.0%
TGTGCAGGTAGAGAAGAATA+TGG - chr5_1:16282129-16282148 Msa0720340:intron 40.0%
GTGAGAGCAGAGGAATATTA+TGG - chr5_1:16282151-16282170 Msa0720340:intron 40.0%
GAAAGCAATTCACCATCTTC+AGG + chr5_1:16282196-16282215 None:intergenic 40.0%
GGTGAATTGCTTTCGCTTTA+CGG - chr5_1:16282202-16282221 Msa0720340:intron 40.0%
!! CGCTTTACGGAAAGTTGATA+TGG - chr5_1:16282215-16282234 Msa0720340:intron 40.0%
TTCATGTTGCTCCTGATGAT+AGG - chr5_1:16282287-16282306 Msa0720340:intron 40.0%
CACATTCGACATTCTGAACT+CGG - chr5_1:16283104-16283123 Msa0720340:intron 40.0%
TGTTCATGCTGTTCTCATTC+AGG + chr5_1:16283736-16283755 None:intergenic 40.0%
TCATATCCGGCATTTCATCA+AGG + chr5_1:16283764-16283783 None:intergenic 40.0%
TTGATGAAATGCCGGATATG+AGG - chr5_1:16283763-16283782 Msa0720340:CDS 40.0%
AGAACTTCTCTAATGCGAAC+CGG - chr5_1:16281599-16281618 Msa0720340:three_prime_UTR 40.0%
! TGGAAATGCAGGGAAACTTT+TGG + chr5_1:16281725-16281744 None:intergenic 40.0%
! ATCTCAATCTTTTCCGGTTG+AGG - chr5_1:16281853-16281872 Msa0720340:three_prime_UTR 40.0%
GGTGGTGAAAGGATGAAAAT+CGG - chr5_1:16281941-16281960 Msa0720340:three_prime_UTR 40.0%
! GCGCTTTTGCTGAGAAATTA+CGG - chr5_1:16282004-16282023 Msa0720340:three_prime_UTR 40.0%
! CGCTTTTGCTGAGAAATTAC+GGG - chr5_1:16282005-16282024 Msa0720340:three_prime_UTR 40.0%
TTACGGGAAATATCTTCACG+AGG - chr5_1:16282021-16282040 Msa0720340:three_prime_UTR 40.0%
TGTGCAGGTAGAGAAGAATA+TGG - chr5_1:16282129-16282148 Msa0720340:intron 40.0%
GTGAGAGCAGAGGAATATTA+TGG - chr5_1:16282151-16282170 Msa0720340:intron 40.0%
GAAAGCAATTCACCATCTTC+AGG + chr5_1:16282196-16282215 None:intergenic 40.0%
GGTGAATTGCTTTCGCTTTA+CGG - chr5_1:16282202-16282221 Msa0720340:intron 40.0%
!! CGCTTTACGGAAAGTTGATA+TGG - chr5_1:16282215-16282234 Msa0720340:intron 40.0%
TTCATGTTGCTCCTGATGAT+AGG - chr5_1:16282287-16282306 Msa0720340:intron 40.0%
CACATTCGACATTCTGAACT+CGG - chr5_1:16283104-16283123 Msa0720340:intron 40.0%
TGTTCATGCTGTTCTCATTC+AGG + chr5_1:16283736-16283755 None:intergenic 40.0%
TCATATCCGGCATTTCATCA+AGG + chr5_1:16283764-16283783 None:intergenic 40.0%
TTGATGAAATGCCGGATATG+AGG - chr5_1:16283763-16283782 Msa0720340:CDS 40.0%
GATTCCGTCGGAATGTTTGT+CGG + chr5_1:16281753-16281772 None:intergenic 45.0%
! TCTTTTCCGGTTGAGGATAC+CGG - chr5_1:16281860-16281879 Msa0720340:three_prime_UTR 45.0%
GGTGATGTAACAGTCAACAC+CGG - chr5_1:16281911-16281930 Msa0720340:three_prime_UTR 45.0%
! ATTTCTCAGCAAAAGCGCGT+CGG + chr5_1:16282002-16282021 None:intergenic 45.0%
GAAGAATATGGTGAGAGCAG+AGG - chr5_1:16282141-16282160 Msa0720340:intron 45.0%
ATTCTGGCGAATCCTGAAGA+TGG - chr5_1:16282181-16282200 Msa0720340:intron 45.0%
TCTAATATGCAGCACGGTGT+TGG - chr5_1:16282801-16282820 Msa0720340:intron 45.0%
CTAATATGCAGCACGGTGTT+GGG - chr5_1:16282802-16282821 Msa0720340:intron 45.0%
ATCCTATGCCCACTTCATGT+GGG - chr5_1:16282825-16282844 Msa0720340:intron 45.0%
GAGGATGAAGTGGTGGTTAA+CGG - chr5_1:16282865-16282884 Msa0720340:intron 45.0%
! ATTATAGGGTAGGGCGTTTC+TGG + chr5_1:16283228-16283247 None:intergenic 45.0%
ACAGAAGAGACTAAGCTCTC+AGG - chr5_1:16283529-16283548 Msa0720340:CDS 45.0%
AGCTCTCAGGAACAAAGTTC+CGG - chr5_1:16283542-16283561 Msa0720340:CDS 45.0%
CTCTTGCGAAATGATGCTAC+CGG + chr5_1:16283564-16283583 None:intergenic 45.0%
GTAGCATCATTTCGCAAGAG+AGG - chr5_1:16283564-16283583 Msa0720340:CDS 45.0%
AAGAGAGGACGAAGATCATC+AGG - chr5_1:16283579-16283598 Msa0720340:CDS 45.0%
TTCTTTGCTAAGTTAGGGGC+AGG + chr5_1:16283639-16283658 None:intergenic 45.0%
AATGCCGGATATGAGGTTGA+TGG - chr5_1:16283770-16283789 Msa0720340:CDS 45.0%
CTCTCCATCAACCTCATATC+CGG + chr5_1:16283777-16283796 None:intergenic 45.0%
GATTCCGTCGGAATGTTTGT+CGG + chr5_1:16281753-16281772 None:intergenic 45.0%
! TCTTTTCCGGTTGAGGATAC+CGG - chr5_1:16281860-16281879 Msa0720340:three_prime_UTR 45.0%
GGTGATGTAACAGTCAACAC+CGG - chr5_1:16281911-16281930 Msa0720340:three_prime_UTR 45.0%
! ATTTCTCAGCAAAAGCGCGT+CGG + chr5_1:16282002-16282021 None:intergenic 45.0%
GAAGAATATGGTGAGAGCAG+AGG - chr5_1:16282141-16282160 Msa0720340:intron 45.0%
ATTCTGGCGAATCCTGAAGA+TGG - chr5_1:16282181-16282200 Msa0720340:intron 45.0%
TCTAATATGCAGCACGGTGT+TGG - chr5_1:16282801-16282820 Msa0720340:intron 45.0%
CTAATATGCAGCACGGTGTT+GGG - chr5_1:16282802-16282821 Msa0720340:intron 45.0%
ATCCTATGCCCACTTCATGT+GGG - chr5_1:16282825-16282844 Msa0720340:intron 45.0%
GAGGATGAAGTGGTGGTTAA+CGG - chr5_1:16282865-16282884 Msa0720340:intron 45.0%
! ATTATAGGGTAGGGCGTTTC+TGG + chr5_1:16283228-16283247 None:intergenic 45.0%
ACAGAAGAGACTAAGCTCTC+AGG - chr5_1:16283529-16283548 Msa0720340:CDS 45.0%
AGCTCTCAGGAACAAAGTTC+CGG - chr5_1:16283542-16283561 Msa0720340:CDS 45.0%
CTCTTGCGAAATGATGCTAC+CGG + chr5_1:16283564-16283583 None:intergenic 45.0%
GTAGCATCATTTCGCAAGAG+AGG - chr5_1:16283564-16283583 Msa0720340:CDS 45.0%
AAGAGAGGACGAAGATCATC+AGG - chr5_1:16283579-16283598 Msa0720340:CDS 45.0%
TTCTTTGCTAAGTTAGGGGC+AGG + chr5_1:16283639-16283658 None:intergenic 45.0%
AATGCCGGATATGAGGTTGA+TGG - chr5_1:16283770-16283789 Msa0720340:CDS 45.0%
CTCTCCATCAACCTCATATC+CGG + chr5_1:16283777-16283796 None:intergenic 45.0%
TGTCGCCAGTGAATGAAGCT+TGG + chr5_1:16281682-16281701 None:intergenic 50.0%
!! CTTTTGGTGATTGAACGCGG+TGG + chr5_1:16281709-16281728 None:intergenic 50.0%
TCCACCGACAAACATTCCGA+CGG - chr5_1:16281746-16281765 Msa0720340:three_prime_UTR 50.0%
GATGTAACAGTCAACACCGG+TGG - chr5_1:16281914-16281933 Msa0720340:three_prime_UTR 50.0%
ACAGTCAACACCGGTGGAAA+CGG - chr5_1:16281920-16281939 Msa0720340:three_prime_UTR 50.0%
GATCCTATGCCCACTTCATG+TGG - chr5_1:16282824-16282843 Msa0720340:intron 50.0%
TTCCCACATGAAGTGGGCAT+AGG + chr5_1:16282830-16282849 None:intergenic 50.0%
GATGAAGTGGTGGTTAACGG+CGG - chr5_1:16282868-16282887 Msa0720340:intron 50.0%
AGAGGACGAAGATCATCAGG+CGG - chr5_1:16283582-16283601 Msa0720340:CDS 50.0%
ACAATGGTTGCCTTCGCGAA+GGG - chr5_1:16283665-16283684 Msa0720340:CDS 50.0%
TGTCGCCAGTGAATGAAGCT+TGG + chr5_1:16281682-16281701 None:intergenic 50.0%
!! CTTTTGGTGATTGAACGCGG+TGG + chr5_1:16281709-16281728 None:intergenic 50.0%
TCCACCGACAAACATTCCGA+CGG - chr5_1:16281746-16281765 Msa0720340:three_prime_UTR 50.0%
GATGTAACAGTCAACACCGG+TGG - chr5_1:16281914-16281933 Msa0720340:three_prime_UTR 50.0%
ACAGTCAACACCGGTGGAAA+CGG - chr5_1:16281920-16281939 Msa0720340:three_prime_UTR 50.0%
GATCCTATGCCCACTTCATG+TGG - chr5_1:16282824-16282843 Msa0720340:intron 50.0%
TTCCCACATGAAGTGGGCAT+AGG + chr5_1:16282830-16282849 None:intergenic 50.0%
GATGAAGTGGTGGTTAACGG+CGG - chr5_1:16282868-16282887 Msa0720340:intron 50.0%
AGAGGACGAAGATCATCAGG+CGG - chr5_1:16283582-16283601 Msa0720340:CDS 50.0%
ACAATGGTTGCCTTCGCGAA+GGG - chr5_1:16283665-16283684 Msa0720340:CDS 50.0%
! GTTTAGAACCGGGACGGAAC+CGG + chr5_1:16281621-16281640 None:intergenic 55.0%
!! TTCCGTCCCGGTTCTAAACC+CGG - chr5_1:16281622-16281641 Msa0720340:three_prime_UTR 55.0%
! AGTGGACCGGGTTTAGAACC+GGG + chr5_1:16281631-16281650 None:intergenic 55.0%
! GAGTGGACCGGGTTTAGAAC+CGG + chr5_1:16281632-16281651 None:intergenic 55.0%
! GTTCTAAACCCGGTCCACTC+CGG - chr5_1:16281632-16281651 Msa0720340:three_prime_UTR 55.0%
!! AGGTTCGAGTTGAACCGGAG+TGG + chr5_1:16281649-16281668 None:intergenic 55.0%
!! GAGGGAGGTTCGAGTTGAAC+CGG + chr5_1:16281654-16281673 None:intergenic 55.0%
GAATGAAGCTTGGCGGGAGA+GGG + chr5_1:16281672-16281691 None:intergenic 55.0%
TGAATGAAGCTTGGCGGGAG+AGG + chr5_1:16281673-16281692 None:intergenic 55.0%
TCCCGCCAAGCTTCATTCAC+TGG - chr5_1:16281674-16281693 Msa0720340:three_prime_UTR 55.0%
GCCAGTGAATGAAGCTTGGC+GGG + chr5_1:16281678-16281697 None:intergenic 55.0%
CGCCAGTGAATGAAGCTTGG+CGG + chr5_1:16281679-16281698 None:intergenic 55.0%
GTCGGTGGAGTGGAAATGCA+GGG + chr5_1:16281735-16281754 None:intergenic 55.0%
TGTCGGTGGAGTGGAAATGC+AGG + chr5_1:16281736-16281755 None:intergenic 55.0%
CGGAATGTTTGTCGGTGGAG+TGG + chr5_1:16281745-16281764 None:intergenic 55.0%
TCCGTCGGAATGTTTGTCGG+TGG + chr5_1:16281750-16281769 None:intergenic 55.0%
CCGAATCCGGTATCCTCAAC+CGG + chr5_1:16281869-16281888 None:intergenic 55.0%
CCGGTTGAGGATACCGGATT+CGG - chr5_1:16281866-16281885 Msa0720340:three_prime_UTR 55.0%
GTTGAGGATACCGGATTCGG+CGG - chr5_1:16281869-16281888 Msa0720340:three_prime_UTR 55.0%
CCTTTCACCACCGTTTCCAC+CGG + chr5_1:16281933-16281952 None:intergenic 55.0%
TGCCCACTTCATGTGGGAAG+CGG - chr5_1:16282831-16282850 Msa0720340:intron 55.0%
CTCCGCTTCCCACATGAAGT+GGG + chr5_1:16282836-16282855 None:intergenic 55.0%
GGAAGAGGAGGAGGATGAAG+TGG - chr5_1:16282855-16282874 Msa0720340:intron 55.0%
AGAGGAGGAGGATGAAGTGG+TGG - chr5_1:16282858-16282877 Msa0720340:intron 55.0%
CACAATGGTTGCCTTCGCGA+AGG - chr5_1:16283664-16283683 Msa0720340:CDS 55.0%
! GTTTAGAACCGGGACGGAAC+CGG + chr5_1:16281621-16281640 None:intergenic 55.0%
!! TTCCGTCCCGGTTCTAAACC+CGG - chr5_1:16281622-16281641 Msa0720340:three_prime_UTR 55.0%
! AGTGGACCGGGTTTAGAACC+GGG + chr5_1:16281631-16281650 None:intergenic 55.0%
! GAGTGGACCGGGTTTAGAAC+CGG + chr5_1:16281632-16281651 None:intergenic 55.0%
! GTTCTAAACCCGGTCCACTC+CGG - chr5_1:16281632-16281651 Msa0720340:three_prime_UTR 55.0%
!! AGGTTCGAGTTGAACCGGAG+TGG + chr5_1:16281649-16281668 None:intergenic 55.0%
!! GAGGGAGGTTCGAGTTGAAC+CGG + chr5_1:16281654-16281673 None:intergenic 55.0%
GAATGAAGCTTGGCGGGAGA+GGG + chr5_1:16281672-16281691 None:intergenic 55.0%
TGAATGAAGCTTGGCGGGAG+AGG + chr5_1:16281673-16281692 None:intergenic 55.0%
TCCCGCCAAGCTTCATTCAC+TGG - chr5_1:16281674-16281693 Msa0720340:three_prime_UTR 55.0%
GCCAGTGAATGAAGCTTGGC+GGG + chr5_1:16281678-16281697 None:intergenic 55.0%
CGCCAGTGAATGAAGCTTGG+CGG + chr5_1:16281679-16281698 None:intergenic 55.0%
GTCGGTGGAGTGGAAATGCA+GGG + chr5_1:16281735-16281754 None:intergenic 55.0%
TGTCGGTGGAGTGGAAATGC+AGG + chr5_1:16281736-16281755 None:intergenic 55.0%
CGGAATGTTTGTCGGTGGAG+TGG + chr5_1:16281745-16281764 None:intergenic 55.0%
TCCGTCGGAATGTTTGTCGG+TGG + chr5_1:16281750-16281769 None:intergenic 55.0%
CCGAATCCGGTATCCTCAAC+CGG + chr5_1:16281869-16281888 None:intergenic 55.0%
CCGGTTGAGGATACCGGATT+CGG - chr5_1:16281866-16281885 Msa0720340:three_prime_UTR 55.0%
GTTGAGGATACCGGATTCGG+CGG - chr5_1:16281869-16281888 Msa0720340:three_prime_UTR 55.0%
CCTTTCACCACCGTTTCCAC+CGG + chr5_1:16281933-16281952 None:intergenic 55.0%
TGCCCACTTCATGTGGGAAG+CGG - chr5_1:16282831-16282850 Msa0720340:intron 55.0%
CTCCGCTTCCCACATGAAGT+GGG + chr5_1:16282836-16282855 None:intergenic 55.0%
GGAAGAGGAGGAGGATGAAG+TGG - chr5_1:16282855-16282874 Msa0720340:intron 55.0%
AGAGGAGGAGGATGAAGTGG+TGG - chr5_1:16282858-16282877 Msa0720340:intron 55.0%
CACAATGGTTGCCTTCGCGA+AGG - chr5_1:16283664-16283683 Msa0720340:CDS 55.0%
! AATGCGAACCGGTTCCGTCC+CGG - chr5_1:16281610-16281629 Msa0720340:three_prime_UTR 60.0%
! GACCGGGTTTAGAACCGGGA+CGG + chr5_1:16281627-16281646 None:intergenic 60.0%
GAGTTGAACCGGAGTGGACC+GGG + chr5_1:16281643-16281662 None:intergenic 60.0%
! CGAGTTGAACCGGAGTGGAC+CGG + chr5_1:16281644-16281663 None:intergenic 60.0%
! GGAGGAGGCGGATTCGATCA+CGG - chr5_1:16281890-16281909 Msa0720340:three_prime_UTR 60.0%
GTCAACACCGGTGGAAACGG+TGG - chr5_1:16281923-16281942 Msa0720340:three_prime_UTR 60.0%
CCGGTGGAAACGGTGGTGAA+AGG - chr5_1:16281930-16281949 Msa0720340:three_prime_UTR 60.0%
! CTCAGCAAAAGCGCGTCGGT+AGG + chr5_1:16281998-16282017 None:intergenic 60.0%
CCTCCGCTTCCCACATGAAG+TGG + chr5_1:16282837-16282856 None:intergenic 60.0%
CCACTTCATGTGGGAAGCGG+AGG - chr5_1:16282834-16282853 Msa0720340:intron 60.0%
CATGTGGGAAGCGGAGGAAG+AGG - chr5_1:16282840-16282859 Msa0720340:intron 60.0%
CGACGAGTGGAGGAGTAACC+TGG - chr5_1:16283605-16283624 Msa0720340:CDS 60.0%
! AATGCGAACCGGTTCCGTCC+CGG - chr5_1:16281610-16281629 Msa0720340:three_prime_UTR 60.0%
! GACCGGGTTTAGAACCGGGA+CGG + chr5_1:16281627-16281646 None:intergenic 60.0%
GAGTTGAACCGGAGTGGACC+GGG + chr5_1:16281643-16281662 None:intergenic 60.0%
! CGAGTTGAACCGGAGTGGAC+CGG + chr5_1:16281644-16281663 None:intergenic 60.0%
! GGAGGAGGCGGATTCGATCA+CGG - chr5_1:16281890-16281909 Msa0720340:three_prime_UTR 60.0%
GTCAACACCGGTGGAAACGG+TGG - chr5_1:16281923-16281942 Msa0720340:three_prime_UTR 60.0%
CCGGTGGAAACGGTGGTGAA+AGG - chr5_1:16281930-16281949 Msa0720340:three_prime_UTR 60.0%
! CTCAGCAAAAGCGCGTCGGT+AGG + chr5_1:16281998-16282017 None:intergenic 60.0%
CCTCCGCTTCCCACATGAAG+TGG + chr5_1:16282837-16282856 None:intergenic 60.0%
CCACTTCATGTGGGAAGCGG+AGG - chr5_1:16282834-16282853 Msa0720340:intron 60.0%
CATGTGGGAAGCGGAGGAAG+AGG - chr5_1:16282840-16282859 Msa0720340:intron 60.0%
CGACGAGTGGAGGAGTAACC+TGG - chr5_1:16283605-16283624 Msa0720340:CDS 60.0%
TGAAGCTTGGCGGGAGAGGG+AGG + chr5_1:16281669-16281688 None:intergenic 65.0%
GAGGATACCGGATTCGGCGG+AGG - chr5_1:16281872-16281891 Msa0720340:three_prime_UTR 65.0%
GATACCGGATTCGGCGGAGG+AGG - chr5_1:16281875-16281894 Msa0720340:three_prime_UTR 65.0%
GTGGGAAGCGGAGGAAGAGG+AGG - chr5_1:16282843-16282862 Msa0720340:intron 65.0%
GGAAGCGGAGGAAGAGGAGG+AGG - chr5_1:16282846-16282865 Msa0720340:intron 65.0%
GATCATCAGGCGGCGACGAG+TGG - chr5_1:16283592-16283611 Msa0720340:CDS 65.0%
!! TAGGGGCAGGTGCTGATGCC+AGG + chr5_1:16283626-16283645 None:intergenic 65.0%
GGTTGCCTTCGCGAAGGGTG+TGG - chr5_1:16283670-16283689 Msa0720340:CDS 65.0%
! TGCCTTCGCGAAGGGTGTGG+CGG - chr5_1:16283673-16283692 Msa0720340:CDS 65.0%
TGAAGCTTGGCGGGAGAGGG+AGG + chr5_1:16281669-16281688 None:intergenic 65.0%
GAGGATACCGGATTCGGCGG+AGG - chr5_1:16281872-16281891 Msa0720340:three_prime_UTR 65.0%
GATACCGGATTCGGCGGAGG+AGG - chr5_1:16281875-16281894 Msa0720340:three_prime_UTR 65.0%
GTGGGAAGCGGAGGAAGAGG+AGG - chr5_1:16282843-16282862 Msa0720340:intron 65.0%
GGAAGCGGAGGAAGAGGAGG+AGG - chr5_1:16282846-16282865 Msa0720340:intron 65.0%
GATCATCAGGCGGCGACGAG+TGG - chr5_1:16283592-16283611 Msa0720340:CDS 65.0%
!! TAGGGGCAGGTGCTGATGCC+AGG + chr5_1:16283626-16283645 None:intergenic 65.0%
GGTTGCCTTCGCGAAGGGTG+TGG - chr5_1:16283670-16283689 Msa0720340:CDS 65.0%
! TGCCTTCGCGAAGGGTGTGG+CGG - chr5_1:16283673-16283692 Msa0720340:CDS 65.0%
ACCGGATTCGGCGGAGGAGG+CGG - chr5_1:16281878-16281897 Msa0720340:three_prime_UTR 70.0%
TCCGCCTCCTCCGCCGAATC+CGG + chr5_1:16281882-16281901 None:intergenic 70.0%
CATCAGGCGGCGACGAGTGG+AGG - chr5_1:16283595-16283614 Msa0720340:CDS 70.0%
CTCCGCCACACCCTTCGCGA+AGG + chr5_1:16283678-16283697 None:intergenic 70.0%
ACCGGATTCGGCGGAGGAGG+CGG - chr5_1:16281878-16281897 Msa0720340:three_prime_UTR 70.0%
TCCGCCTCCTCCGCCGAATC+CGG + chr5_1:16281882-16281901 None:intergenic 70.0%
CATCAGGCGGCGACGAGTGG+AGG - chr5_1:16283595-16283614 Msa0720340:CDS 70.0%
CTCCGCCACACCCTTCGCGA+AGG + chr5_1:16283678-16283697 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 16281571 16283986 16281571 ID=Msa0720340;Name=Msa0720340
chr5_1 mRNA 16281571 16283986 16281571 ID=Msa0720340-mRNA-1;Parent=Msa0720340;Name=Msa0720340-mRNA-1;_AED=0.17;_eAED=0.17;_QI=25|1|1|1|0.66|0.5|4|515|237
chr5_1 exon 16281571 16282057 16281571 ID=Msa0720340-mRNA-1:exon:6229;Parent=Msa0720340-mRNA-1
chr5_1 exon 16282623 16282744 16282623 ID=Msa0720340-mRNA-1:exon:6228;Parent=Msa0720340-mRNA-1
chr5_1 exon 16283249 16283421 16283249 ID=Msa0720340-mRNA-1:exon:6227;Parent=Msa0720340-mRNA-1
chr5_1 exon 16283515 16283986 16283515 ID=Msa0720340-mRNA-1:exon:6226;Parent=Msa0720340-mRNA-1
chr5_1 five_prime_UTR 16283962 16283986 16283962 ID=Msa0720340-mRNA-1:five_prime_utr;Parent=Msa0720340-mRNA-1
chr5_1 CDS 16283515 16283961 16283515 ID=Msa0720340-mRNA-1:cds;Parent=Msa0720340-mRNA-1
chr5_1 CDS 16283249 16283421 16283249 ID=Msa0720340-mRNA-1:cds;Parent=Msa0720340-mRNA-1
chr5_1 CDS 16282651 16282744 16282651 ID=Msa0720340-mRNA-1:cds;Parent=Msa0720340-mRNA-1
chr5_1 three_prime_UTR 16282623 16282650 16282623 ID=Msa0720340-mRNA-1:three_prime_utr;Parent=Msa0720340-mRNA-1
chr5_1 three_prime_UTR 16281571 16282057 16281571 ID=Msa0720340-mRNA-1:three_prime_utr;Parent=Msa0720340-mRNA-1
Gene Sequence

>Msa0720340

ATGAGAACTTCTCTAATGCGAACCGGTTCCGTCCCGGTTCTAAACCCGGTCCACTCCGGTTCAACTCGAACCTCCCTCTCCCGCCAAGCTTCATTCACTGGCGACAACAGCCACCGCGTTCAATCACCAAAAGTTTCCCTGCATTTCCACTCCACCGACAAACATTCCGACGGAATCAACAGATCTTTATCAGAAAGCTTGATGATTAACTCACCGATCAAGAATTTCAGCTTTTCTCAGAATCTAAATCGAATCGGATCTCAATCTTTTCCGGTTGAGGATACCGGATTCGGCGGAGGAGGCGGATTCGATCACGGTGATGTAACAGTCAACACCGGTGGAAACGGTGGTGAAAGGATGAAAATCGGTGCGTATTATGAAGAAATGTTGAAGTCAAATCCTACCGACGCGCTTTTGCTGAGAAATTACGGGAAATATCTTCACGAGGTAGAGAAGAATATGGTGAGAGCAGAGGAATATTATGGAAGAGCGATTCTGGCGAATCCTGAAGATGGTGAATTGCTTTCGCTTTACGGAAAGTTGATATGGGAAATGAGTAGAGATGAAGAAAGAGCTCAATCTTACTTTGATCAAGCAATTCATGTTGCTCCTGATGATAGCACGGTGTTGGGATCCTATGCCCACTTCATGTGGGAAGCGGAGGAAGAGGAGGAGGATGAAGTGGTGGTTAACGGCGGTATCGCTGCTTTTTAA
Protein sequence

>Msa0720340

MRTSLMRTGSVPVLNPVHSGSTRTSLSRQASFTGDNSHRVQSPKVSLHFHSTDKHSDGINRSLSESLMINSPIKNFSFSQNLNRIGSQSFPVEDTGFGGGGGFDHGDVTVNTGGNGGERMKIGAYYEEMLKSNPTDALLLRNYGKYLHEVEKNMVRAEEYYGRAILANPEDGELLSLYGKLIWEMSRDEERAQSYFDQAIHVAPDDSTVLGSYAHFMWEAEEEEEDEVVVNGGIAAF*