AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0841550

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841550 MtrunA17_Chr5g0411051 89.723 253 23 1 1 250 1 253 1.45e-145 407
Msa0841550 MtrunA17_Chr7g0262061 50.000 118 58 1 109 225 212 329 3.57e-38 136
Msa0841550 MtrunA17_Chr4g0063891 61.702 94 36 0 125 218 165 258 6.33e-38 134
Msa0841550 MtrunA17_Chr7g0262541 50.962 104 51 0 122 225 237 340 3.25e-35 129
Msa0841550 MtrunA17_Chr2g0333081 49.091 110 56 0 119 228 136 245 9.86e-34 122
Msa0841550 MtrunA17_Chr1g0186111 39.683 126 65 2 110 224 250 375 7.48e-27 106
Msa0841550 MtrunA17_Chr1g0186111 37.956 137 75 2 97 224 95 230 1.16e-23 98.2
Msa0841550 MtrunA17_Chr3g0104511 34.314 102 67 0 117 218 394 495 5.81e-16 77.0
Msa0841550 MtrunA17_Chr4g0003301 49.180 61 31 0 153 213 10 70 3.20e-15 68.6
Msa0841550 MtrunA17_Chr5g0436741 30.000 120 83 1 108 226 283 402 1.68e-11 63.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0841550 AT4G17940.1 43.629 259 96 8 1 220 1 248 1.17e-52 172
Msa0841550 AT5G20190.1 47.423 97 51 0 125 221 159 255 1.97e-30 115
Msa0841550 AT4G32340.1 53.000 100 46 1 122 220 110 209 5.73e-30 112
Msa0841550 AT1G80130.1 48.980 98 50 0 124 221 167 264 3.08e-26 104
Msa0841550 AT1G04530.1 44.898 98 53 1 122 219 121 217 4.09e-23 95.9
Msa0841550 AT1G04530.1 30.400 125 67 2 118 222 186 310 6.33e-15 73.2
Msa0841550 AT1G07280.3 35.354 99 64 0 120 218 433 531 4.84e-15 74.7
Msa0841550 AT1G07280.1 35.354 99 64 0 120 218 433 531 4.84e-15 74.7
Msa0841550 AT1G07280.2 35.354 99 64 0 120 218 433 531 4.84e-15 74.7
Msa0841550 AT2G29670.1 35.354 99 64 0 120 218 418 516 1.50e-14 73.2
Msa0841550 AT2G29670.2 35.354 99 64 0 120 218 418 516 1.50e-14 73.2

Find 91 sgRNAs with CRISPR-Local

Find 310 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATATCAATTCACTGTATTT+TGG 0.161174 5_4:-17910863 Msa0841550:three_prime_UTR
CGCTTTACGGAAAGTTGATA+TGG 0.203106 5_4:-17911816 Msa0841550:CDS
ATTATAGGGTAGGGCGTTTC+TGG 0.207251 5_4:+17910497 None:intergenic
CAGTCTCTCTCTTCAATTAT+AGG 0.214326 5_4:+17910482 None:intergenic
AATACATATGAGTATCTAAA+AGG 0.241907 5_4:-17910330 Msa0841550:three_prime_UTR
GGTGAATTGCTTTCGCTTTA+CGG 0.272624 5_4:-17911829 Msa0841550:CDS
GTGAGAGCAGAGGAATATTA+TGG 0.317988 5_4:-17911880 Msa0841550:CDS
AGTCTCTCTCTTCAATTATA+GGG 0.324428 5_4:+17910483 None:intergenic
GGTTATGTGACAACAATAAA+TGG 0.341346 5_4:-17910558 Msa0841550:three_prime_UTR
AGTCCAAATGTTTACTTAAC+CGG 0.353627 5_4:-17910724 Msa0841550:three_prime_UTR
GAAAGCAATTCACCATCTTC+AGG 0.375992 5_4:+17911838 None:intergenic
CCGGTTGAGGATACCGGATT+CGG 0.388537 5_4:-17912159 Msa0841550:CDS
TGGAAATGCAGGGAAACTTT+TGG 0.390187 5_4:+17912303 None:intergenic
GGAAGCGGAGGAAGAGGAGG+AGG 0.390683 5_4:-17910961 Msa0841550:CDS
TCTCCGGTTAAGTAAACATT+TGG 0.391751 5_4:+17910721 None:intergenic
ACCGGATTCGGCGGAGGAGG+CGG 0.393617 5_4:-17912147 Msa0841550:CDS
TCCGCCTCCTCCGCCGAATC+CGG 0.405182 5_4:+17912146 None:intergenic
CTAATATGCAGCACGGTGTT+GGG 0.405986 5_4:-17911005 Msa0841550:intron
TCTAATATGCAGCACGGTGT+TGG 0.410479 5_4:-17911006 Msa0841550:intron
GAGTGGACCGGGTTTAGAAC+CGG 0.424474 5_4:+17912396 None:intergenic
CGAGTTGAACCGGAGTGGAC+CGG 0.448414 5_4:+17912384 None:intergenic
CACATTTGACATTCTGAACT+CGG 0.450580 5_4:-17910657 Msa0841550:three_prime_UTR
GATACCGGATTCGGCGGAGG+AGG 0.455567 5_4:-17912150 Msa0841550:CDS
GATTCCGTCGGAATGTTTGT+CGG 0.460131 5_4:+17912275 None:intergenic
GGAAGAGGAGGAGGATGAAG+TGG 0.463731 5_4:-17910952 Msa0841550:CDS
TGAATGAAGCTTGGCGGGAG+AGG 0.465208 5_4:+17912355 None:intergenic
GTTTAGAACCGGGACGGAAC+CGG 0.466497 5_4:+17912407 None:intergenic
TTCATGTTGCTCCTGATGAT+AGG 0.466904 5_4:-17911744 Msa0841550:intron
GAGGGAGGTTCGAGTTGAAC+CGG 0.467848 5_4:+17912374 None:intergenic
TCCCGCCAAGCTTCATTCAC+TGG 0.472339 5_4:-17912351 Msa0841550:CDS
TTCCGTCCCGGTTCTAAACC+CGG 0.476767 5_4:-17912403 Msa0841550:CDS
GCTTTACGGAAAGTTGATAT+GGG 0.476855 5_4:-17911815 Msa0841550:CDS
AATGTATAATACCTATCATC+AGG 0.482652 5_4:+17911733 None:intergenic
CCGAATCCGGTATCCTCAAC+CGG 0.486419 5_4:+17912159 None:intergenic
CTATTCATCCCTAAAATCGT+TGG 0.486496 5_4:+17910281 None:intergenic
TCTCAGAATCTAAATCGAAT+CGG 0.489329 5_4:-17912195 Msa0841550:CDS
CTCTCTTCAATTATAGGGTA+GGG 0.491721 5_4:+17910488 None:intergenic
ACAGTCAACACCGGTGGAAA+CGG 0.493901 5_4:-17912105 Msa0841550:CDS
CCTTTCACCACCGTTTCCAC+CGG 0.494768 5_4:+17912095 None:intergenic
CCTCCGCTTCCCACATGAAG+TGG 0.499492 5_4:+17910973 None:intergenic
TATTATTTCGTCAAACTCAC+TGG 0.507205 5_4:+17910836 None:intergenic
CGCCAGTGAATGAAGCTTGG+CGG 0.508090 5_4:+17912349 None:intergenic
GCCAGTGAATGAAGCTTGGC+GGG 0.509193 5_4:+17912350 None:intergenic
AAGCGGAAGAATCAGCTGTT+GGG 0.517511 5_4:-17910902 Msa0841550:CDS
GAATGAAGCTTGGCGGGAGA+GGG 0.521311 5_4:+17912356 None:intergenic
GAGTTGAACCGGAGTGGACC+GGG 0.521646 5_4:+17912385 None:intergenic
GTGGGAAGCGGAGGAAGAGG+AGG 0.525243 5_4:-17910964 Msa0841550:CDS
AGAACTTCTCTAATGCGAAC+CGG 0.526010 5_4:-17912426 Msa0841550:CDS
AATGCGAACCGGTTCCGTCC+CGG 0.526633 5_4:-17912415 Msa0841550:CDS
AGAGGAGGAGGATGAAGTGG+TGG 0.531822 5_4:-17910949 Msa0841550:CDS
TGCCCACTTCATGTGGGAAG+CGG 0.532394 5_4:-17910976 Msa0841550:CDS
AAAGCGGAAGAATCAGCTGT+TGG 0.536393 5_4:-17910903 Msa0841550:CDS
ATACATATGAGTATCTAAAA+GGG 0.541772 5_4:-17910329 Msa0841550:three_prime_UTR
CATGTGGGAAGCGGAGGAAG+AGG 0.547034 5_4:-17910967 Msa0841550:CDS
AGAAGTAACATTATGATCTC+CGG 0.547577 5_4:+17910705 None:intergenic
GAGGATACCGGATTCGGCGG+AGG 0.548110 5_4:-17912153 Msa0841550:CDS
GGTGGTGAAAGGATGAAAAT+CGG 0.548568 5_4:-17912084 Msa0841550:CDS
TCTCTCTTCAATTATAGGGT+AGG 0.549352 5_4:+17910487 None:intergenic
GAAAAGCTGAAATTCTTGAT+CGG 0.563410 5_4:+17912216 None:intergenic
TAAAGATCTGTTGATTCCGT+CGG 0.563817 5_4:+17912263 None:intergenic
TTCAGAATGTCAAATGTGAA+AGG 0.567362 5_4:+17910662 None:intergenic
CTCCGCTTCCCACATGAAGT+GGG 0.568198 5_4:+17910974 None:intergenic
TGAAGCTTGGCGGGAGAGGG+AGG 0.572384 5_4:+17912359 None:intergenic
GGTTAACTGCGGTGAAATGA+AGG 0.573563 5_4:-17910928 Msa0841550:CDS
CGGAATGTTTGTCGGTGGAG+TGG 0.574481 5_4:+17912283 None:intergenic
GATCCTATGCCCACTTCATG+TGG 0.575020 5_4:-17910983 Msa0841550:CDS
TGTCGGTGGAGTGGAAATGC+AGG 0.576329 5_4:+17912292 None:intergenic
CTCAGCAAAAGCGCGTCGGT+AGG 0.580945 5_4:+17912030 None:intergenic
CTAATTGCGACGAATGTGAA+AGG 0.582249 5_4:-17910579 Msa0841550:three_prime_UTR
CCGGTGGAAACGGTGGTGAA+AGG 0.583383 5_4:-17912095 Msa0841550:CDS
CCACTTCATGTGGGAAGCGG+AGG 0.584056 5_4:-17910973 Msa0841550:CDS
TCCGTCGGAATGTTTGTCGG+TGG 0.584409 5_4:+17912278 None:intergenic
AGATCAGAAACAAAACAAGT+AGG 0.591950 5_4:+17910433 None:intergenic
TTCCCACATGAAGTGGGCAT+AGG 0.605173 5_4:+17910980 None:intergenic
ATCCTATGCCCACTTCATGT+GGG 0.612131 5_4:-17910982 Msa0841550:CDS
GTTCTAAACCCGGTCCACTC+CGG 0.618867 5_4:-17912393 Msa0841550:CDS
ATTTCTCAGCAAAAGCGCGT+CGG 0.621203 5_4:+17912026 None:intergenic
AGTGGACCGGGTTTAGAACC+GGG 0.630183 5_4:+17912397 None:intergenic
TGTCGCCAGTGAATGAAGCT+TGG 0.631457 5_4:+17912346 None:intergenic
CGGTGAAATGAAGGTGAAAG+CGG 0.639409 5_4:-17910919 Msa0841550:CDS
GTCGGTGGAGTGGAAATGCA+GGG 0.643205 5_4:+17912293 None:intergenic
GTCAACACCGGTGGAAACGG+TGG 0.643860 5_4:-17912102 Msa0841550:CDS
GGAGGAGGCGGATTCGATCA+CGG 0.644648 5_4:-17912135 Msa0841550:CDS
GACCGGGTTTAGAACCGGGA+CGG 0.654441 5_4:+17912401 None:intergenic
GTTGAGGATACCGGATTCGG+CGG 0.656017 5_4:-17912156 Msa0841550:CDS
AGGTTCGAGTTGAACCGGAG+TGG 0.664029 5_4:+17912379 None:intergenic
TCCACCGACAAACATTCCGA+CGG 0.679368 5_4:-17912279 Msa0841550:CDS
GATGTAACAGTCAACACCGG+TGG 0.692588 5_4:-17912111 Msa0841550:CDS
TTACGGGAAATATCTTCACG+AGG 0.714068 5_4:-17912004 Msa0841550:intron
GGTGATGTAACAGTCAACAC+CGG 0.748533 5_4:-17912114 Msa0841550:CDS
GATGAAGTGGTGGTTAACTG+CGG 0.772562 5_4:-17910939 Msa0841550:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AATCTCTAATAATTTTTATT+TGG - chr5_4:17911680-17911699 Msa0841550:intron 10.0%
!!! AGATCTTTTTTTTTTTTTTT+TGG - chr5_4:17912090-17912109 Msa0841550:CDS 10.0%
!!! AATCTCTAATAATTTTTATT+TGG - chr5_4:17911680-17911699 Msa0841550:intron 10.0%
!!! AGATCTTTTTTTTTTTTTTT+TGG - chr5_4:17912090-17912109 Msa0841550:CDS 10.0%
!! TGATCATTAATTACAATTAA+TGG + chr5_4:17911028-17911047 None:intergenic 15.0%
!! TTGTGTAAAATTATTTACAT+TGG - chr5_4:17911620-17911639 Msa0841550:intron 15.0%
!! TGATCATTAATTACAATTAA+TGG + chr5_4:17911028-17911047 None:intergenic 15.0%
!! TTGTGTAAAATTATTTACAT+TGG - chr5_4:17911620-17911639 Msa0841550:intron 15.0%
!! AATTAATGATCATGATAGTT+TGG - chr5_4:17911036-17911055 Msa0841550:intron 20.0%
!! TAATGATTATGATTAAGTGA+TGG + chr5_4:17911517-17911536 None:intergenic 20.0%
!!! AATATCAATTCACTGTATTT+TGG - chr5_4:17911849-17911868 Msa0841550:CDS 20.0%
!! AATACATATGAGTATCTAAA+AGG - chr5_4:17912382-17912401 Msa0841550:CDS 20.0%
!! ATACATATGAGTATCTAAAA+GGG - chr5_4:17912383-17912402 Msa0841550:CDS 20.0%
!! AATTAATGATCATGATAGTT+TGG - chr5_4:17911036-17911055 Msa0841550:intron 20.0%
!! TAATGATTATGATTAAGTGA+TGG + chr5_4:17911517-17911536 None:intergenic 20.0%
!!! AATATCAATTCACTGTATTT+TGG - chr5_4:17911849-17911868 Msa0841550:CDS 20.0%
!! AATACATATGAGTATCTAAA+AGG - chr5_4:17912382-17912401 Msa0841550:CDS 20.0%
!! ATACATATGAGTATCTAAAA+GGG - chr5_4:17912383-17912402 Msa0841550:CDS 20.0%
!!! AGTTTATTTTGTAGAAAGAG+TGG + chr5_4:17910263-17910282 None:intergenic 25.0%
!! CACTTCTTTCTTTCTATTTT+CGG + chr5_4:17910771-17910790 None:intergenic 25.0%
!!! ATTTGGATTTTGATTTTTGC+AGG - chr5_4:17910795-17910814 Msa0841550:three_prime_UTR 25.0%
! AATGTATAATACCTATCATC+AGG + chr5_4:17910982-17911001 None:intergenic 25.0%
!! CCATAAATCTTTTGATAGAT+GGG + chr5_4:17911102-17911121 None:intergenic 25.0%
! CCATCTATCAAAAGATTTAT+GGG - chr5_4:17911100-17911119 Msa0841550:intron 25.0%
! CATCTATCAAAAGATTTATG+GGG - chr5_4:17911101-17911120 Msa0841550:intron 25.0%
! TTGCAATTTATCTACATTCA+GGG + chr5_4:17911174-17911193 None:intergenic 25.0%
! TTTGCAATTTATCTACATTC+AGG + chr5_4:17911175-17911194 None:intergenic 25.0%
! ATAACGACAATAAATCTTTG+GGG + chr5_4:17911397-17911416 None:intergenic 25.0%
! GATAACGACAATAAATCTTT+GGG + chr5_4:17911398-17911417 None:intergenic 25.0%
!! TGATAACGACAATAAATCTT+TGG + chr5_4:17911399-17911418 None:intergenic 25.0%
!! ATGTGTGTGTAAATATTTTC+CGG - chr5_4:17911481-17911500 Msa0841550:intron 25.0%
!!! AGTTTATTTTGTAGAAAGAG+TGG + chr5_4:17910263-17910282 None:intergenic 25.0%
!! CACTTCTTTCTTTCTATTTT+CGG + chr5_4:17910771-17910790 None:intergenic 25.0%
!!! ATTTGGATTTTGATTTTTGC+AGG - chr5_4:17910795-17910814 Msa0841550:three_prime_UTR 25.0%
! AATGTATAATACCTATCATC+AGG + chr5_4:17910982-17911001 None:intergenic 25.0%
!! CCATAAATCTTTTGATAGAT+GGG + chr5_4:17911102-17911121 None:intergenic 25.0%
! CCATCTATCAAAAGATTTAT+GGG - chr5_4:17911100-17911119 Msa0841550:intron 25.0%
! CATCTATCAAAAGATTTATG+GGG - chr5_4:17911101-17911120 Msa0841550:intron 25.0%
! TTGCAATTTATCTACATTCA+GGG + chr5_4:17911174-17911193 None:intergenic 25.0%
! TTTGCAATTTATCTACATTC+AGG + chr5_4:17911175-17911194 None:intergenic 25.0%
! ATAACGACAATAAATCTTTG+GGG + chr5_4:17911397-17911416 None:intergenic 25.0%
! GATAACGACAATAAATCTTT+GGG + chr5_4:17911398-17911417 None:intergenic 25.0%
!! TGATAACGACAATAAATCTT+TGG + chr5_4:17911399-17911418 None:intergenic 25.0%
!! ATGTGTGTGTAAATATTTTC+CGG - chr5_4:17911481-17911500 Msa0841550:intron 25.0%
GAAAAGCTGAAATTCTTGAT+CGG + chr5_4:17910499-17910518 None:intergenic 30.0%
TCTCAGAATCTAAATCGAAT+CGG - chr5_4:17910517-17910536 Msa0841550:three_prime_UTR 30.0%
AAAGAAAGAAGTGAGTGATT+TGG - chr5_4:17910778-17910797 Msa0841550:three_prime_UTR 30.0%
TTTGCAGGTAGAGAAAAATA+TGG - chr5_4:17910810-17910829 Msa0841550:three_prime_UTR 30.0%
CCCATCTATCAAAAGATTTA+TGG - chr5_4:17911099-17911118 Msa0841550:intron 30.0%
! CCCATAAATCTTTTGATAGA+TGG + chr5_4:17911103-17911122 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG + chr5_4:17911203-17911222 None:intergenic 30.0%
ACTAATGAAGTTTGCATTCA+GGG + chr5_4:17911235-17911254 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG - chr5_4:17911323-17911342 Msa0841550:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG - chr5_4:17911324-17911343 Msa0841550:intron 30.0%
CACAATTGACAAATCACAAT+CGG + chr5_4:17911605-17911624 None:intergenic 30.0%
TATTATTTCGTCAAACTCAC+TGG + chr5_4:17911879-17911898 None:intergenic 30.0%
AGTCCAAATGTTTACTTAAC+CGG - chr5_4:17911988-17912007 Msa0841550:intron 30.0%
AGAAGTAACATTATGATCTC+CGG + chr5_4:17912010-17912029 None:intergenic 30.0%
TTCAGAATGTCAAATGTGAA+AGG + chr5_4:17912053-17912072 None:intergenic 30.0%
GGTTATGTGACAACAATAAA+TGG - chr5_4:17912154-17912173 Msa0841550:CDS 30.0%
AGTCTCTCTCTTCAATTATA+GGG + chr5_4:17912232-17912251 None:intergenic 30.0%
AGATCAGAAACAAAACAAGT+AGG + chr5_4:17912282-17912301 None:intergenic 30.0%
!!! TTGTTTTGTTTCTGATCTAC+TGG - chr5_4:17912284-17912303 Msa0841550:CDS 30.0%
! TTCTCTTTTCCAACGATTTT+AGG - chr5_4:17912422-17912441 Msa0841550:CDS 30.0%
! TCTCTTTTCCAACGATTTTA+GGG - chr5_4:17912423-17912442 Msa0841550:CDS 30.0%
GAAAAGCTGAAATTCTTGAT+CGG + chr5_4:17910499-17910518 None:intergenic 30.0%
TCTCAGAATCTAAATCGAAT+CGG - chr5_4:17910517-17910536 Msa0841550:three_prime_UTR 30.0%
AAAGAAAGAAGTGAGTGATT+TGG - chr5_4:17910778-17910797 Msa0841550:three_prime_UTR 30.0%
TTTGCAGGTAGAGAAAAATA+TGG - chr5_4:17910810-17910829 Msa0841550:three_prime_UTR 30.0%
CCCATCTATCAAAAGATTTA+TGG - chr5_4:17911099-17911118 Msa0841550:intron 30.0%
! CCCATAAATCTTTTGATAGA+TGG + chr5_4:17911103-17911122 None:intergenic 30.0%
ACTAACAAAGTCTACATTCA+GGG + chr5_4:17911203-17911222 None:intergenic 30.0%
ACTAATGAAGTTTGCATTCA+GGG + chr5_4:17911235-17911254 None:intergenic 30.0%
TTTGCAATTTCTCTTCATTC+AGG - chr5_4:17911323-17911342 Msa0841550:intron 30.0%
TTGCAATTTCTCTTCATTCA+GGG - chr5_4:17911324-17911343 Msa0841550:intron 30.0%
CACAATTGACAAATCACAAT+CGG + chr5_4:17911605-17911624 None:intergenic 30.0%
TATTATTTCGTCAAACTCAC+TGG + chr5_4:17911879-17911898 None:intergenic 30.0%
AGTCCAAATGTTTACTTAAC+CGG - chr5_4:17911988-17912007 Msa0841550:intron 30.0%
AGAAGTAACATTATGATCTC+CGG + chr5_4:17912010-17912029 None:intergenic 30.0%
TTCAGAATGTCAAATGTGAA+AGG + chr5_4:17912053-17912072 None:intergenic 30.0%
GGTTATGTGACAACAATAAA+TGG - chr5_4:17912154-17912173 Msa0841550:CDS 30.0%
AGTCTCTCTCTTCAATTATA+GGG + chr5_4:17912232-17912251 None:intergenic 30.0%
AGATCAGAAACAAAACAAGT+AGG + chr5_4:17912282-17912301 None:intergenic 30.0%
!!! TTGTTTTGTTTCTGATCTAC+TGG - chr5_4:17912284-17912303 Msa0841550:CDS 30.0%
! TTCTCTTTTCCAACGATTTT+AGG - chr5_4:17912422-17912441 Msa0841550:CDS 30.0%
! TCTCTTTTCCAACGATTTTA+GGG - chr5_4:17912423-17912442 Msa0841550:CDS 30.0%
!! AAACTTTTGGTGATTGAACG+CGG + chr5_4:17910399-17910418 None:intergenic 35.0%
!! TAAAGATCTGTTGATTCCGT+CGG + chr5_4:17910452-17910471 None:intergenic 35.0%
! AATCGGATCTCAATCTTTTC+CGG - chr5_4:17910534-17910553 Msa0841550:three_prime_UTR 35.0%
!! ATTTTAGCGAATCCTGAAGA+TGG - chr5_4:17910862-17910881 Msa0841550:three_prime_UTR 35.0%
!! GCTTTACGGAAAGTTGATAT+GGG - chr5_4:17910897-17910916 Msa0841550:CDS 35.0%
!! GGATTTAACTTGTGAATGCA+TGG - chr5_4:17911057-17911076 Msa0841550:intron 35.0%
!! TTAACTTGTGAATGCATGGA+CGG - chr5_4:17911061-17911080 Msa0841550:intron 35.0%
GACTAACAAAGTCTACATTC+AGG + chr5_4:17911204-17911223 None:intergenic 35.0%
GACTAATGAAGTTTGCATTC+AGG + chr5_4:17911236-17911255 None:intergenic 35.0%
ACTAACAGAGTCTACATTCA+GGG + chr5_4:17911267-17911286 None:intergenic 35.0%
! AGTCACTTTAGTCCTTGAAT+GGG + chr5_4:17911370-17911389 None:intergenic 35.0%
! TAGTCACTTTAGTCCTTGAA+TGG + chr5_4:17911371-17911390 None:intergenic 35.0%
AAGTGATGGTTATGTTTAGC+CGG + chr5_4:17911503-17911522 None:intergenic 35.0%
! AATCGTTTTACACATGTTCG+TGG - chr5_4:17911546-17911565 Msa0841550:intron 35.0%
! ATCGTTTTACACATGTTCGT+GGG - chr5_4:17911547-17911566 Msa0841550:intron 35.0%
! TGGTTTTCTAATATGCAGCA+CGG - chr5_4:17911700-17911719 Msa0841550:intron 35.0%
TCTCCGGTTAAGTAAACATT+TGG + chr5_4:17911994-17912013 None:intergenic 35.0%
CACATTTGACATTCTGAACT+CGG - chr5_4:17912055-17912074 Msa0841550:CDS 35.0%
CTCTCTTCAATTATAGGGTA+GGG + chr5_4:17912227-17912246 None:intergenic 35.0%
TCTCTCTTCAATTATAGGGT+AGG + chr5_4:17912228-17912247 None:intergenic 35.0%
CAGTCTCTCTCTTCAATTAT+AGG + chr5_4:17912233-17912252 None:intergenic 35.0%
CTATTCATCCCTAAAATCGT+TGG + chr5_4:17912434-17912453 None:intergenic 35.0%
!! AAACTTTTGGTGATTGAACG+CGG + chr5_4:17910399-17910418 None:intergenic 35.0%
!! TAAAGATCTGTTGATTCCGT+CGG + chr5_4:17910452-17910471 None:intergenic 35.0%
! AATCGGATCTCAATCTTTTC+CGG - chr5_4:17910534-17910553 Msa0841550:three_prime_UTR 35.0%
!! ATTTTAGCGAATCCTGAAGA+TGG - chr5_4:17910862-17910881 Msa0841550:three_prime_UTR 35.0%
!! GCTTTACGGAAAGTTGATAT+GGG - chr5_4:17910897-17910916 Msa0841550:CDS 35.0%
!! GGATTTAACTTGTGAATGCA+TGG - chr5_4:17911057-17911076 Msa0841550:intron 35.0%
!! TTAACTTGTGAATGCATGGA+CGG - chr5_4:17911061-17911080 Msa0841550:intron 35.0%
GACTAACAAAGTCTACATTC+AGG + chr5_4:17911204-17911223 None:intergenic 35.0%
GACTAATGAAGTTTGCATTC+AGG + chr5_4:17911236-17911255 None:intergenic 35.0%
ACTAACAGAGTCTACATTCA+GGG + chr5_4:17911267-17911286 None:intergenic 35.0%
! AGTCACTTTAGTCCTTGAAT+GGG + chr5_4:17911370-17911389 None:intergenic 35.0%
! TAGTCACTTTAGTCCTTGAA+TGG + chr5_4:17911371-17911390 None:intergenic 35.0%
AAGTGATGGTTATGTTTAGC+CGG + chr5_4:17911503-17911522 None:intergenic 35.0%
! AATCGTTTTACACATGTTCG+TGG - chr5_4:17911546-17911565 Msa0841550:intron 35.0%
! ATCGTTTTACACATGTTCGT+GGG - chr5_4:17911547-17911566 Msa0841550:intron 35.0%
! TGGTTTTCTAATATGCAGCA+CGG - chr5_4:17911700-17911719 Msa0841550:intron 35.0%
TCTCCGGTTAAGTAAACATT+TGG + chr5_4:17911994-17912013 None:intergenic 35.0%
CACATTTGACATTCTGAACT+CGG - chr5_4:17912055-17912074 Msa0841550:CDS 35.0%
CTCTCTTCAATTATAGGGTA+GGG + chr5_4:17912227-17912246 None:intergenic 35.0%
TCTCTCTTCAATTATAGGGT+AGG + chr5_4:17912228-17912247 None:intergenic 35.0%
CAGTCTCTCTCTTCAATTAT+AGG + chr5_4:17912233-17912252 None:intergenic 35.0%
CTATTCATCCCTAAAATCGT+TGG + chr5_4:17912434-17912453 None:intergenic 35.0%
AGAACTTCTCTAATGCGAAC+CGG - chr5_4:17910286-17910305 Msa0841550:three_prime_UTR 40.0%
! TGGAAATGCAGGGAAACTTT+TGG + chr5_4:17910412-17910431 None:intergenic 40.0%
! ATCTCAATCTTTTCCGGTTG+AGG - chr5_4:17910540-17910559 Msa0841550:three_prime_UTR 40.0%
GGTGGTGAAAGGATGAAAAT+CGG - chr5_4:17910628-17910647 Msa0841550:three_prime_UTR 40.0%
! GCGCTTTTGCTGAGAAATTA+CGG - chr5_4:17910691-17910710 Msa0841550:three_prime_UTR 40.0%
! CGCTTTTGCTGAGAAATTAC+GGG - chr5_4:17910692-17910711 Msa0841550:three_prime_UTR 40.0%
TTACGGGAAATATCTTCACG+AGG - chr5_4:17910708-17910727 Msa0841550:three_prime_UTR 40.0%
GAAAAATATGGTGAGAGCAG+AGG - chr5_4:17910822-17910841 Msa0841550:three_prime_UTR 40.0%
GTGAGAGCAGAGGAATATTA+TGG - chr5_4:17910832-17910851 Msa0841550:three_prime_UTR 40.0%
GAAAGCAATTCACCATCTTC+AGG + chr5_4:17910877-17910896 None:intergenic 40.0%
GGTGAATTGCTTTCGCTTTA+CGG - chr5_4:17910883-17910902 Msa0841550:exon 40.0%
!! CGCTTTACGGAAAGTTGATA+TGG - chr5_4:17910896-17910915 Msa0841550:CDS 40.0%
TTCATGTTGCTCCTGATGAT+AGG - chr5_4:17910968-17910987 Msa0841550:CDS 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - chr5_4:17911127-17911146 Msa0841550:intron 40.0%
ACTTTAGTCCCTGAATGGAA+AGG - chr5_4:17911132-17911151 Msa0841550:intron 40.0%
CTTTAGTCCCTGAATGGAAA+GGG - chr5_4:17911133-17911152 Msa0841550:intron 40.0%
GACTAACAGAGTCTACATTC+AGG + chr5_4:17911268-17911287 None:intergenic 40.0%
CTAATTGCGACGAATGTGAA+AGG - chr5_4:17912133-17912152 Msa0841550:CDS 40.0%
AGAACTTCTCTAATGCGAAC+CGG - chr5_4:17910286-17910305 Msa0841550:three_prime_UTR 40.0%
! TGGAAATGCAGGGAAACTTT+TGG + chr5_4:17910412-17910431 None:intergenic 40.0%
! ATCTCAATCTTTTCCGGTTG+AGG - chr5_4:17910540-17910559 Msa0841550:three_prime_UTR 40.0%
GGTGGTGAAAGGATGAAAAT+CGG - chr5_4:17910628-17910647 Msa0841550:three_prime_UTR 40.0%
! GCGCTTTTGCTGAGAAATTA+CGG - chr5_4:17910691-17910710 Msa0841550:three_prime_UTR 40.0%
! CGCTTTTGCTGAGAAATTAC+GGG - chr5_4:17910692-17910711 Msa0841550:three_prime_UTR 40.0%
TTACGGGAAATATCTTCACG+AGG - chr5_4:17910708-17910727 Msa0841550:three_prime_UTR 40.0%
GAAAAATATGGTGAGAGCAG+AGG - chr5_4:17910822-17910841 Msa0841550:three_prime_UTR 40.0%
GTGAGAGCAGAGGAATATTA+TGG - chr5_4:17910832-17910851 Msa0841550:three_prime_UTR 40.0%
GAAAGCAATTCACCATCTTC+AGG + chr5_4:17910877-17910896 None:intergenic 40.0%
GGTGAATTGCTTTCGCTTTA+CGG - chr5_4:17910883-17910902 Msa0841550:exon 40.0%
!! CGCTTTACGGAAAGTTGATA+TGG - chr5_4:17910896-17910915 Msa0841550:CDS 40.0%
TTCATGTTGCTCCTGATGAT+AGG - chr5_4:17910968-17910987 Msa0841550:CDS 40.0%
! TAGTCACTTTAGTCCCTGAA+TGG - chr5_4:17911127-17911146 Msa0841550:intron 40.0%
ACTTTAGTCCCTGAATGGAA+AGG - chr5_4:17911132-17911151 Msa0841550:intron 40.0%
CTTTAGTCCCTGAATGGAAA+GGG - chr5_4:17911133-17911152 Msa0841550:intron 40.0%
GACTAACAGAGTCTACATTC+AGG + chr5_4:17911268-17911287 None:intergenic 40.0%
CTAATTGCGACGAATGTGAA+AGG - chr5_4:17912133-17912152 Msa0841550:CDS 40.0%
GATTCCGTCGGAATGTTTGT+CGG + chr5_4:17910440-17910459 None:intergenic 45.0%
! TCTTTTCCGGTTGAGGATAC+CGG - chr5_4:17910547-17910566 Msa0841550:three_prime_UTR 45.0%
GGTGATGTAACAGTCAACAC+CGG - chr5_4:17910598-17910617 Msa0841550:three_prime_UTR 45.0%
! ATTTCTCAGCAAAAGCGCGT+CGG + chr5_4:17910689-17910708 None:intergenic 45.0%
GACGAATCCCTTTCCATTCA+GGG + chr5_4:17911143-17911162 None:intergenic 45.0%
TGACGAATCCCTTTCCATTC+AGG + chr5_4:17911144-17911163 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+GGG + chr5_4:17911311-17911330 None:intergenic 45.0%
AATTGCAAAACAGTCCCTGC+AGG + chr5_4:17911312-17911331 None:intergenic 45.0%
CTTTAGTCCTTGAATGGGAG+AGG + chr5_4:17911365-17911384 None:intergenic 45.0%
TCTAATATGCAGCACGGTGT+TGG - chr5_4:17911706-17911725 Msa0841550:intron 45.0%
CTAATATGCAGCACGGTGTT+GGG - chr5_4:17911707-17911726 Msa0841550:intron 45.0%
ATCCTATGCCCACTTCATGT+GGG - chr5_4:17911730-17911749 Msa0841550:intron 45.0%
GATGAAGTGGTGGTTAACTG+CGG - chr5_4:17911773-17911792 Msa0841550:CDS 45.0%
GGTTAACTGCGGTGAAATGA+AGG - chr5_4:17911784-17911803 Msa0841550:CDS 45.0%
CGGTGAAATGAAGGTGAAAG+CGG - chr5_4:17911793-17911812 Msa0841550:CDS 45.0%
AAAGCGGAAGAATCAGCTGT+TGG - chr5_4:17911809-17911828 Msa0841550:CDS 45.0%
AAGCGGAAGAATCAGCTGTT+GGG - chr5_4:17911810-17911829 Msa0841550:CDS 45.0%
! ATTATAGGGTAGGGCGTTTC+TGG + chr5_4:17912218-17912237 None:intergenic 45.0%
GATTCCGTCGGAATGTTTGT+CGG + chr5_4:17910440-17910459 None:intergenic 45.0%
! TCTTTTCCGGTTGAGGATAC+CGG - chr5_4:17910547-17910566 Msa0841550:three_prime_UTR 45.0%
GGTGATGTAACAGTCAACAC+CGG - chr5_4:17910598-17910617 Msa0841550:three_prime_UTR 45.0%
! ATTTCTCAGCAAAAGCGCGT+CGG + chr5_4:17910689-17910708 None:intergenic 45.0%
GACGAATCCCTTTCCATTCA+GGG + chr5_4:17911143-17911162 None:intergenic 45.0%
TGACGAATCCCTTTCCATTC+AGG + chr5_4:17911144-17911163 None:intergenic 45.0%
ATTGCAAAACAGTCCCTGCA+GGG + chr5_4:17911311-17911330 None:intergenic 45.0%
AATTGCAAAACAGTCCCTGC+AGG + chr5_4:17911312-17911331 None:intergenic 45.0%
CTTTAGTCCTTGAATGGGAG+AGG + chr5_4:17911365-17911384 None:intergenic 45.0%
TCTAATATGCAGCACGGTGT+TGG - chr5_4:17911706-17911725 Msa0841550:intron 45.0%
CTAATATGCAGCACGGTGTT+GGG - chr5_4:17911707-17911726 Msa0841550:intron 45.0%
ATCCTATGCCCACTTCATGT+GGG - chr5_4:17911730-17911749 Msa0841550:intron 45.0%
GATGAAGTGGTGGTTAACTG+CGG - chr5_4:17911773-17911792 Msa0841550:CDS 45.0%
GGTTAACTGCGGTGAAATGA+AGG - chr5_4:17911784-17911803 Msa0841550:CDS 45.0%
CGGTGAAATGAAGGTGAAAG+CGG - chr5_4:17911793-17911812 Msa0841550:CDS 45.0%
AAAGCGGAAGAATCAGCTGT+TGG - chr5_4:17911809-17911828 Msa0841550:CDS 45.0%
AAGCGGAAGAATCAGCTGTT+GGG - chr5_4:17911810-17911829 Msa0841550:CDS 45.0%
! ATTATAGGGTAGGGCGTTTC+TGG + chr5_4:17912218-17912237 None:intergenic 45.0%
TGTCGCCAGTGAATGAAGCT+TGG + chr5_4:17910369-17910388 None:intergenic 50.0%
!! CTTTTGGTGATTGAACGCGG+TGG + chr5_4:17910396-17910415 None:intergenic 50.0%
TCCACCGACAAACATTCCGA+CGG - chr5_4:17910433-17910452 Msa0841550:three_prime_UTR 50.0%
GATGTAACAGTCAACACCGG+TGG - chr5_4:17910601-17910620 Msa0841550:three_prime_UTR 50.0%
ACAGTCAACACCGGTGGAAA+CGG - chr5_4:17910607-17910626 Msa0841550:three_prime_UTR 50.0%
TCCCTGAAATTGACCCTGCA+GGG - chr5_4:17911295-17911314 Msa0841550:intron 50.0%
TCCCTGCAGGGTCAATTTCA+GGG + chr5_4:17911299-17911318 None:intergenic 50.0%
GACGAATCCTCTCCCATTCA+AGG - chr5_4:17911355-17911374 Msa0841550:intron 50.0%
GATCCTATGCCCACTTCATG+TGG - chr5_4:17911729-17911748 Msa0841550:intron 50.0%
TTCCCACATGAAGTGGGCAT+AGG + chr5_4:17911735-17911754 None:intergenic 50.0%
TGTCGCCAGTGAATGAAGCT+TGG + chr5_4:17910369-17910388 None:intergenic 50.0%
!! CTTTTGGTGATTGAACGCGG+TGG + chr5_4:17910396-17910415 None:intergenic 50.0%
TCCACCGACAAACATTCCGA+CGG - chr5_4:17910433-17910452 Msa0841550:three_prime_UTR 50.0%
GATGTAACAGTCAACACCGG+TGG - chr5_4:17910601-17910620 Msa0841550:three_prime_UTR 50.0%
ACAGTCAACACCGGTGGAAA+CGG - chr5_4:17910607-17910626 Msa0841550:three_prime_UTR 50.0%
TCCCTGAAATTGACCCTGCA+GGG - chr5_4:17911295-17911314 Msa0841550:intron 50.0%
TCCCTGCAGGGTCAATTTCA+GGG + chr5_4:17911299-17911318 None:intergenic 50.0%
GACGAATCCTCTCCCATTCA+AGG - chr5_4:17911355-17911374 Msa0841550:intron 50.0%
GATCCTATGCCCACTTCATG+TGG - chr5_4:17911729-17911748 Msa0841550:intron 50.0%
TTCCCACATGAAGTGGGCAT+AGG + chr5_4:17911735-17911754 None:intergenic 50.0%
! GTTTAGAACCGGGACGGAAC+CGG + chr5_4:17910308-17910327 None:intergenic 55.0%
!! TTCCGTCCCGGTTCTAAACC+CGG - chr5_4:17910309-17910328 Msa0841550:three_prime_UTR 55.0%
! AGTGGACCGGGTTTAGAACC+GGG + chr5_4:17910318-17910337 None:intergenic 55.0%
! GAGTGGACCGGGTTTAGAAC+CGG + chr5_4:17910319-17910338 None:intergenic 55.0%
! GTTCTAAACCCGGTCCACTC+CGG - chr5_4:17910319-17910338 Msa0841550:three_prime_UTR 55.0%
!! AGGTTCGAGTTGAACCGGAG+TGG + chr5_4:17910336-17910355 None:intergenic 55.0%
!! GAGGGAGGTTCGAGTTGAAC+CGG + chr5_4:17910341-17910360 None:intergenic 55.0%
GAATGAAGCTTGGCGGGAGA+GGG + chr5_4:17910359-17910378 None:intergenic 55.0%
TGAATGAAGCTTGGCGGGAG+AGG + chr5_4:17910360-17910379 None:intergenic 55.0%
TCCCGCCAAGCTTCATTCAC+TGG - chr5_4:17910361-17910380 Msa0841550:three_prime_UTR 55.0%
GCCAGTGAATGAAGCTTGGC+GGG + chr5_4:17910365-17910384 None:intergenic 55.0%
CGCCAGTGAATGAAGCTTGG+CGG + chr5_4:17910366-17910385 None:intergenic 55.0%
GTCGGTGGAGTGGAAATGCA+GGG + chr5_4:17910422-17910441 None:intergenic 55.0%
TGTCGGTGGAGTGGAAATGC+AGG + chr5_4:17910423-17910442 None:intergenic 55.0%
CGGAATGTTTGTCGGTGGAG+TGG + chr5_4:17910432-17910451 None:intergenic 55.0%
TCCGTCGGAATGTTTGTCGG+TGG + chr5_4:17910437-17910456 None:intergenic 55.0%
CCGAATCCGGTATCCTCAAC+CGG + chr5_4:17910556-17910575 None:intergenic 55.0%
CCGGTTGAGGATACCGGATT+CGG - chr5_4:17910553-17910572 Msa0841550:three_prime_UTR 55.0%
GTTGAGGATACCGGATTCGG+CGG - chr5_4:17910556-17910575 Msa0841550:three_prime_UTR 55.0%
CCTTTCACCACCGTTTCCAC+CGG + chr5_4:17910620-17910639 None:intergenic 55.0%
GTCCCTGAAATTGACCCTGC+AGG - chr5_4:17911294-17911313 Msa0841550:intron 55.0%
GTCCCTGCAGGGTCAATTTC+AGG + chr5_4:17911300-17911319 None:intergenic 55.0%
TGCCCACTTCATGTGGGAAG+CGG - chr5_4:17911736-17911755 Msa0841550:intron 55.0%
CTCCGCTTCCCACATGAAGT+GGG + chr5_4:17911741-17911760 None:intergenic 55.0%
GGAAGAGGAGGAGGATGAAG+TGG - chr5_4:17911760-17911779 Msa0841550:CDS 55.0%
AGAGGAGGAGGATGAAGTGG+TGG - chr5_4:17911763-17911782 Msa0841550:CDS 55.0%
! GTTTAGAACCGGGACGGAAC+CGG + chr5_4:17910308-17910327 None:intergenic 55.0%
!! TTCCGTCCCGGTTCTAAACC+CGG - chr5_4:17910309-17910328 Msa0841550:three_prime_UTR 55.0%
! AGTGGACCGGGTTTAGAACC+GGG + chr5_4:17910318-17910337 None:intergenic 55.0%
! GAGTGGACCGGGTTTAGAAC+CGG + chr5_4:17910319-17910338 None:intergenic 55.0%
! GTTCTAAACCCGGTCCACTC+CGG - chr5_4:17910319-17910338 Msa0841550:three_prime_UTR 55.0%
!! AGGTTCGAGTTGAACCGGAG+TGG + chr5_4:17910336-17910355 None:intergenic 55.0%
!! GAGGGAGGTTCGAGTTGAAC+CGG + chr5_4:17910341-17910360 None:intergenic 55.0%
GAATGAAGCTTGGCGGGAGA+GGG + chr5_4:17910359-17910378 None:intergenic 55.0%
TGAATGAAGCTTGGCGGGAG+AGG + chr5_4:17910360-17910379 None:intergenic 55.0%
TCCCGCCAAGCTTCATTCAC+TGG - chr5_4:17910361-17910380 Msa0841550:three_prime_UTR 55.0%
GCCAGTGAATGAAGCTTGGC+GGG + chr5_4:17910365-17910384 None:intergenic 55.0%
CGCCAGTGAATGAAGCTTGG+CGG + chr5_4:17910366-17910385 None:intergenic 55.0%
GTCGGTGGAGTGGAAATGCA+GGG + chr5_4:17910422-17910441 None:intergenic 55.0%
TGTCGGTGGAGTGGAAATGC+AGG + chr5_4:17910423-17910442 None:intergenic 55.0%
CGGAATGTTTGTCGGTGGAG+TGG + chr5_4:17910432-17910451 None:intergenic 55.0%
TCCGTCGGAATGTTTGTCGG+TGG + chr5_4:17910437-17910456 None:intergenic 55.0%
CCGAATCCGGTATCCTCAAC+CGG + chr5_4:17910556-17910575 None:intergenic 55.0%
CCGGTTGAGGATACCGGATT+CGG - chr5_4:17910553-17910572 Msa0841550:three_prime_UTR 55.0%
GTTGAGGATACCGGATTCGG+CGG - chr5_4:17910556-17910575 Msa0841550:three_prime_UTR 55.0%
CCTTTCACCACCGTTTCCAC+CGG + chr5_4:17910620-17910639 None:intergenic 55.0%
GTCCCTGAAATTGACCCTGC+AGG - chr5_4:17911294-17911313 Msa0841550:intron 55.0%
GTCCCTGCAGGGTCAATTTC+AGG + chr5_4:17911300-17911319 None:intergenic 55.0%
TGCCCACTTCATGTGGGAAG+CGG - chr5_4:17911736-17911755 Msa0841550:intron 55.0%
CTCCGCTTCCCACATGAAGT+GGG + chr5_4:17911741-17911760 None:intergenic 55.0%
GGAAGAGGAGGAGGATGAAG+TGG - chr5_4:17911760-17911779 Msa0841550:CDS 55.0%
AGAGGAGGAGGATGAAGTGG+TGG - chr5_4:17911763-17911782 Msa0841550:CDS 55.0%
! AATGCGAACCGGTTCCGTCC+CGG - chr5_4:17910297-17910316 Msa0841550:three_prime_UTR 60.0%
! GACCGGGTTTAGAACCGGGA+CGG + chr5_4:17910314-17910333 None:intergenic 60.0%
GAGTTGAACCGGAGTGGACC+GGG + chr5_4:17910330-17910349 None:intergenic 60.0%
! CGAGTTGAACCGGAGTGGAC+CGG + chr5_4:17910331-17910350 None:intergenic 60.0%
! GGAGGAGGCGGATTCGATCA+CGG - chr5_4:17910577-17910596 Msa0841550:three_prime_UTR 60.0%
GTCAACACCGGTGGAAACGG+TGG - chr5_4:17910610-17910629 Msa0841550:three_prime_UTR 60.0%
CCGGTGGAAACGGTGGTGAA+AGG - chr5_4:17910617-17910636 Msa0841550:three_prime_UTR 60.0%
! CTCAGCAAAAGCGCGTCGGT+AGG + chr5_4:17910685-17910704 None:intergenic 60.0%
CCTCCGCTTCCCACATGAAG+TGG + chr5_4:17911742-17911761 None:intergenic 60.0%
CCACTTCATGTGGGAAGCGG+AGG - chr5_4:17911739-17911758 Msa0841550:intron 60.0%
CATGTGGGAAGCGGAGGAAG+AGG - chr5_4:17911745-17911764 Msa0841550:CDS 60.0%
! AATGCGAACCGGTTCCGTCC+CGG - chr5_4:17910297-17910316 Msa0841550:three_prime_UTR 60.0%
! GACCGGGTTTAGAACCGGGA+CGG + chr5_4:17910314-17910333 None:intergenic 60.0%
GAGTTGAACCGGAGTGGACC+GGG + chr5_4:17910330-17910349 None:intergenic 60.0%
! CGAGTTGAACCGGAGTGGAC+CGG + chr5_4:17910331-17910350 None:intergenic 60.0%
! GGAGGAGGCGGATTCGATCA+CGG - chr5_4:17910577-17910596 Msa0841550:three_prime_UTR 60.0%
GTCAACACCGGTGGAAACGG+TGG - chr5_4:17910610-17910629 Msa0841550:three_prime_UTR 60.0%
CCGGTGGAAACGGTGGTGAA+AGG - chr5_4:17910617-17910636 Msa0841550:three_prime_UTR 60.0%
! CTCAGCAAAAGCGCGTCGGT+AGG + chr5_4:17910685-17910704 None:intergenic 60.0%
CCTCCGCTTCCCACATGAAG+TGG + chr5_4:17911742-17911761 None:intergenic 60.0%
CCACTTCATGTGGGAAGCGG+AGG - chr5_4:17911739-17911758 Msa0841550:intron 60.0%
CATGTGGGAAGCGGAGGAAG+AGG - chr5_4:17911745-17911764 Msa0841550:CDS 60.0%
TGAAGCTTGGCGGGAGAGGG+AGG + chr5_4:17910356-17910375 None:intergenic 65.0%
GAGGATACCGGATTCGGCGG+AGG - chr5_4:17910559-17910578 Msa0841550:three_prime_UTR 65.0%
GATACCGGATTCGGCGGAGG+AGG - chr5_4:17910562-17910581 Msa0841550:three_prime_UTR 65.0%
GTGGGAAGCGGAGGAAGAGG+AGG - chr5_4:17911748-17911767 Msa0841550:CDS 65.0%
GGAAGCGGAGGAAGAGGAGG+AGG - chr5_4:17911751-17911770 Msa0841550:CDS 65.0%
TGAAGCTTGGCGGGAGAGGG+AGG + chr5_4:17910356-17910375 None:intergenic 65.0%
GAGGATACCGGATTCGGCGG+AGG - chr5_4:17910559-17910578 Msa0841550:three_prime_UTR 65.0%
GATACCGGATTCGGCGGAGG+AGG - chr5_4:17910562-17910581 Msa0841550:three_prime_UTR 65.0%
GTGGGAAGCGGAGGAAGAGG+AGG - chr5_4:17911748-17911767 Msa0841550:CDS 65.0%
GGAAGCGGAGGAAGAGGAGG+AGG - chr5_4:17911751-17911770 Msa0841550:CDS 65.0%
ACCGGATTCGGCGGAGGAGG+CGG - chr5_4:17910565-17910584 Msa0841550:three_prime_UTR 70.0%
TCCGCCTCCTCCGCCGAATC+CGG + chr5_4:17910569-17910588 None:intergenic 70.0%
ACCGGATTCGGCGGAGGAGG+CGG - chr5_4:17910565-17910584 Msa0841550:three_prime_UTR 70.0%
TCCGCCTCCTCCGCCGAATC+CGG + chr5_4:17910569-17910588 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_4 gene 17910258 17912476 17910258 ID=Msa0841550;Name=Msa0841550
chr5_4 mRNA 17910258 17912476 17910258 ID=Msa0841550-mRNA-1;Parent=Msa0841550;Name=Msa0841550-mRNA-1;_AED=0.03;_eAED=0.03;_QI=25|1|1|1|1|1|3|626|250
chr5_4 exon 17910258 17911016 17910258 ID=Msa0841550-mRNA-1:exon:7593;Parent=Msa0841550-mRNA-1
chr5_4 exon 17911745 17911917 17911745 ID=Msa0841550-mRNA-1:exon:7592;Parent=Msa0841550-mRNA-1
chr5_4 exon 17912005 17912476 17912005 ID=Msa0841550-mRNA-1:exon:7591;Parent=Msa0841550-mRNA-1
chr5_4 five_prime_UTR 17912452 17912476 17912452 ID=Msa0841550-mRNA-1:five_prime_utr;Parent=Msa0841550-mRNA-1
chr5_4 CDS 17912005 17912451 17912005 ID=Msa0841550-mRNA-1:cds;Parent=Msa0841550-mRNA-1
chr5_4 CDS 17911745 17911917 17911745 ID=Msa0841550-mRNA-1:cds;Parent=Msa0841550-mRNA-1
chr5_4 CDS 17910884 17911016 17910884 ID=Msa0841550-mRNA-1:cds;Parent=Msa0841550-mRNA-1
chr5_4 three_prime_UTR 17910258 17910883 17910258 ID=Msa0841550-mRNA-1:three_prime_utr;Parent=Msa0841550-mRNA-1
Gene Sequence

>Msa0841550

ATGAGAACTTCTCTAATGCGAACCGGTTCCGTCCCGGTTCTAAACCCGGTCCACTCCGGTTCAACTCGAACCTCCCTCTCCCGCCAAGCTTCATTCACTGGCGACAACAGCCACCGCGTTCAATCACCAAAAGTTTCCCTGCATTTCCACTCCACCGACAAACATTCCGACGGAATCAACAGATCTTTATCAGAAAGCTTGATGATTAACTCACCGATCAAGAATTTCAGCTTTTCTCAGAATCTAAATCGAATCGGATCTCAATCTTTTCCGGTTGAGGATACCGGATTCGGCGGAGGAGGCGGATTCGATCACGGTGATGTAACAGTCAACACCGGTGGAAACGGTGGTGAAAGGATGAAAATCGGTGCGTATTATGAAGAAATGTTGAAGTCAAATCCTACCGACGCGCTTTTGCTGAGAAATTACGGGAAATATCTTCACGAGGTAGAGAAAAATATGGTGAGAGCAGAGGAATATTATGGAAGAGCGATTTTAGCGAATCCTGAAGATGGTGAATTGCTTTCGCTTTACGGAAAGTTGATATGGGAAATGAGTAGAGATGAAGAAAGAGCTCAATCTTACTTTGATCAAGCAATTCATGTTGCTCCTGATGATAGCACGGTGTTGGGATCCTATGCCCACTTCATGTGGGAAGCGGAGGAAGAGGAGGAGGATGAAGTGGTGGTTAACTGCGGTGAAATGAAGGTGAAAGCGGAAGAATCAGCTGTTGGGCTGATCGCTGCTTTTTAA
Protein sequence

>Msa0841550

MRTSLMRTGSVPVLNPVHSGSTRTSLSRQASFTGDNSHRVQSPKVSLHFHSTDKHSDGINRSLSESLMINSPIKNFSFSQNLNRIGSQSFPVEDTGFGGGGGFDHGDVTVNTGGNGGERMKIGAYYEEMLKSNPTDALLLRNYGKYLHEVEKNMVRAEEYYGRAILANPEDGELLSLYGKLIWEMSRDEERAQSYFDQAIHVAPDDSTVLGSYAHFMWEAEEEEEDEVVVNCGEMKVKAEESAVGLIAAF*