Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482360 | XP_003608836.1 | 86.111 | 432 | 26 | 4 | 1 | 398 | 1 | 432 | 0.0 | 696 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482360 | sp|Q8LBB2|KING1_ARATH | 62.195 | 410 | 112 | 6 | 24 | 398 | 23 | 424 | 1.79e-172 | 491 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482360 | G7JLE4 | 86.111 | 432 | 26 | 4 | 1 | 398 | 1 | 432 | 0.0 | 696 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0025060 | Msa0482360 | -0.823487 | 1.348704e-53 | -8.615850e-47 |
| Msa0032890 | Msa0482360 | -0.801021 | 1.095859e-48 | -8.615850e-47 |
| Msa0034590 | Msa0482360 | -0.806464 | 8.123893e-50 | -8.615850e-47 |
| Msa0034800 | Msa0482360 | -0.809874 | 1.524607e-50 | -8.615850e-47 |
| Msa0036560 | Msa0482360 | -0.860902 | 1.494066e-63 | -8.615850e-47 |
| Msa0042500 | Msa0482360 | -0.803593 | 3.237763e-49 | -8.615850e-47 |
| Msa0064960 | Msa0482360 | 0.801975 | 6.986166e-49 | -8.615850e-47 |
| Msa0072590 | Msa0482360 | -0.807827 | 4.178701e-50 | -8.615850e-47 |
| Msa0078160 | Msa0482360 | -0.806924 | 6.495455e-50 | -8.615850e-47 |
| Msa0078170 | Msa0482360 | -0.805684 | 1.185426e-49 | -8.615850e-47 |
| Msa0079570 | Msa0482360 | -0.814036 | 1.889963e-51 | -8.615850e-47 |
| Msa0080060 | Msa0482360 | -0.810550 | 1.090258e-50 | -8.615850e-47 |
| Msa0081700 | Msa0482360 | -0.804948 | 1.690925e-49 | -8.615850e-47 |
| Msa0099090 | Msa0482360 | -0.804706 | 1.899167e-49 | -8.615850e-47 |
| Msa0139280 | Msa0482360 | -0.858809 | 6.385630e-63 | -8.615850e-47 |
| Msa0146570 | Msa0482360 | -0.810043 | 1.402267e-50 | -8.615850e-47 |
| Msa0164310 | Msa0482360 | -0.805307 | 1.421918e-49 | -8.615850e-47 |
| Msa0173580 | Msa0482360 | -0.803914 | 2.776989e-49 | -8.615850e-47 |
| Msa0176610 | Msa0482360 | -0.836659 | 8.222599e-57 | -8.615850e-47 |
| Msa0186380 | Msa0482360 | -0.818155 | 2.272258e-52 | -8.615850e-47 |
| Msa0192890 | Msa0482360 | 0.824922 | 6.208675e-54 | -8.615850e-47 |
| Msa0223590 | Msa0482360 | 0.802150 | 6.431317e-49 | -8.615850e-47 |
| Msa0369660 | Msa0482360 | 0.837888 | 3.984931e-57 | -8.615850e-47 |
| Msa0372100 | Msa0482360 | 0.809343 | 1.982693e-50 | -8.615850e-47 |
| Msa0380290 | Msa0482360 | 0.803424 | 3.509413e-49 | -8.615850e-47 |
| Msa0384130 | Msa0482360 | -0.810603 | 1.061907e-50 | -8.615850e-47 |
| Msa0384220 | Msa0482360 | 0.812504 | 4.100184e-51 | -8.615850e-47 |
| Msa0385870 | Msa0482360 | -0.812463 | 4.186347e-51 | -8.615850e-47 |
| Msa0387180 | Msa0482360 | 0.823830 | 1.121498e-53 | -8.615850e-47 |
| Msa0417060 | Msa0482360 | 0.845960 | 2.931709e-59 | -8.615850e-47 |
| Msa0421690 | Msa0482360 | 0.827007 | 1.984097e-54 | -8.615850e-47 |
| Msa0427850 | Msa0482360 | 0.843927 | 1.036899e-58 | -8.615850e-47 |
| Msa0433050 | Msa0482360 | 0.803473 | 3.428108e-49 | -8.615850e-47 |
| Msa0434840 | Msa0482360 | -0.805963 | 1.035623e-49 | -8.615850e-47 |
| Msa0463890 | Msa0482360 | 0.844414 | 7.671999e-59 | -8.615850e-47 |
| Msa0465420 | Msa0482360 | 0.804206 | 2.414765e-49 | -8.615850e-47 |
| Msa0468050 | Msa0482360 | 0.831461 | 1.647886e-55 | -8.615850e-47 |
| Msa0474080 | Msa0482360 | 0.838994 | 2.066163e-57 | -8.615850e-47 |
| Msa0482360 | Msa0483090 | -0.800439 | 1.440499e-48 | -8.615850e-47 |
| Msa0482360 | Msa0501540 | -0.805150 | 1.533941e-49 | -8.615850e-47 |
| Msa0482360 | Msa0504430 | 0.810281 | 1.246479e-50 | -8.615850e-47 |
| Msa0482360 | Msa0511380 | 0.810846 | 9.407472e-51 | -8.615850e-47 |
| Msa0482360 | Msa0522830 | -0.818168 | 2.255920e-52 | -8.615850e-47 |
| Msa0482360 | Msa0523400 | -0.815473 | 9.079395e-52 | -8.615850e-47 |
| Msa0482360 | Msa0524670 | 0.804950 | 1.688570e-49 | -8.615850e-47 |
| Msa0482360 | Msa0559640 | -0.806138 | 9.514112e-50 | -8.615850e-47 |
| Msa0482360 | Msa0622800 | -0.802287 | 6.026678e-49 | -8.615850e-47 |
| Msa0482360 | Msa0636770 | 0.801702 | 7.949530e-49 | -8.615850e-47 |
| Msa0482360 | Msa0645450 | 0.800463 | 1.424374e-48 | -8.615850e-47 |
| Msa0482360 | Msa0648410 | -0.809289 | 2.036405e-50 | -8.615850e-47 |
| Msa0482360 | Msa0674680 | -0.800512 | 1.391967e-48 | -8.615850e-47 |
| Msa0482360 | Msa0690920 | -0.805915 | 1.060025e-49 | -8.615850e-47 |
| Msa0482360 | Msa0708840 | -0.826551 | 2.549596e-54 | -8.615850e-47 |
| Msa0482360 | Msa0714230 | -0.827552 | 1.469324e-54 | -8.615850e-47 |
| Msa0482360 | Msa0720340 | 0.813439 | 2.558068e-51 | -8.615850e-47 |
| Msa0482360 | Msa0730250 | -0.815355 | 9.646580e-52 | -8.615850e-47 |
| Msa0482360 | Msa0742690 | -0.845030 | 5.235453e-59 | -8.615850e-47 |
| Msa0482360 | Msa0748940 | 0.853128 | 2.931424e-61 | -8.615850e-47 |
| Msa0482360 | Msa0753410 | 0.830206 | 3.345612e-55 | -8.615850e-47 |
| Msa0482360 | Msa0779830 | -0.823051 | 1.705162e-53 | -8.615850e-47 |
| Msa0482360 | Msa0783680 | 0.810537 | 1.097078e-50 | -8.615850e-47 |
| Msa0482360 | Msa0795330 | 0.818707 | 1.702835e-52 | -8.615850e-47 |
| Msa0482360 | Msa0801630 | -0.808487 | 3.023788e-50 | -8.615850e-47 |
| Msa0482360 | Msa0827560 | -0.843689 | 1.200787e-58 | -8.615850e-47 |
| Msa0482360 | Msa0828350 | 0.813501 | 2.479055e-51 | -8.615850e-47 |
| Msa0482360 | Msa0831460 | -0.804561 | 2.036125e-49 | -8.615850e-47 |
| Msa0482360 | Msa0841550 | 0.834223 | 3.394174e-56 | -8.615850e-47 |
| Msa0482360 | Msa0854200 | 0.803174 | 3.954399e-49 | -8.615850e-47 |
| Msa0482360 | Msa0854220 | 0.812122 | 4.969587e-51 | -8.615850e-47 |
| Msa0482360 | Msa0862750 | -0.833325 | 5.691310e-56 | -8.615850e-47 |
| Msa0482360 | Msa0882360 | 0.839222 | 1.802834e-57 | -8.615850e-47 |
| Msa0482360 | Msa0911440 | -0.805986 | 1.024114e-49 | -8.615850e-47 |
| Msa0482360 | Msa0911490 | -0.814119 | 1.812079e-51 | -8.615850e-47 |
| Msa0482360 | Msa0946570 | -0.804350 | 2.253727e-49 | -8.615850e-47 |
| Msa0482360 | Msa0947420 | 0.828216 | 1.016780e-54 | -8.615850e-47 |
| Msa0482360 | Msa0982340 | 0.820821 | 5.601749e-53 | -8.615850e-47 |
| Msa0482360 | Msa0985980 | -0.826230 | 3.040562e-54 | -8.615850e-47 |
| Msa0482360 | Msa1026970 | 0.820347 | 7.195649e-53 | -8.615850e-47 |
| Msa0482360 | Msa1034870 | 0.841728 | 3.985248e-58 | -8.615850e-47 |
| Msa0482360 | Msa1039150 | -0.805366 | 1.382054e-49 | -8.615850e-47 |
| Msa0482360 | Msa1043660 | 0.824245 | 8.959097e-54 | -8.615850e-47 |
| Msa0482360 | Msa1074910 | 0.806089 | 9.743313e-50 | -8.615850e-47 |
| Msa0482360 | Msa1083660 | -0.813768 | 2.165634e-51 | -8.615850e-47 |
| Msa0482360 | Msa1085860 | 0.812283 | 4.583220e-51 | -8.615850e-47 |
| Msa0482360 | Msa1137980 | 0.804206 | 2.414319e-49 | -8.615850e-47 |
| Msa0482360 | Msa1154310 | 0.809924 | 1.487641e-50 | -8.615850e-47 |
| Msa0482360 | Msa1164670 | 0.812572 | 3.963716e-51 | -8.615850e-47 |
| Msa0482360 | Msa1187160 | 0.816602 | 5.082441e-52 | -8.615850e-47 |
| Msa0482360 | Msa1197820 | 0.836950 | 6.929439e-57 | -8.615850e-47 |
| Msa0482360 | Msa1207000 | 0.851319 | 9.592230e-61 | -8.615850e-47 |
| Msa0482360 | Msa1207090 | 0.847251 | 1.301893e-59 | -8.615850e-47 |
| Msa0482360 | Msa1208530 | 0.807808 | 4.217866e-50 | -8.615850e-47 |
| Msa0482360 | Msa1235960 | -0.810224 | 1.281678e-50 | -8.615850e-47 |
| Msa0482360 | Msa1235990 | -0.816777 | 4.641648e-52 | -8.615850e-47 |
| Msa0482360 | Msa1251500 | 0.836573 | 8.645853e-57 | -8.615850e-47 |
| Msa0482360 | Msa1257170 | 0.852953 | 3.289883e-61 | -8.615850e-47 |
| Msa0482360 | Msa1258600 | 0.926950 | 2.313659e-91 | -8.615850e-47 |
| Msa0482360 | Msa1290090 | -0.802724 | 4.898377e-49 | -8.615850e-47 |
| Msa0482360 | Msa1292140 | 0.826677 | 2.379779e-54 | -8.615850e-47 |
| Msa0482360 | Msa1298440 | 0.905980 | 2.416413e-80 | -8.615850e-47 |
| Msa0482360 | Msa1302120 | 0.850472 | 1.660876e-60 | -8.615850e-47 |
| Msa0482360 | Msa1316090 | -0.815237 | 1.024548e-51 | -8.615850e-47 |
| Msa0482360 | Msa1320660 | -0.800496 | 1.402703e-48 | -8.615850e-47 |
| Msa0482360 | Msa1330220 | 0.800118 | 1.674473e-48 | -8.615850e-47 |
| Msa0482360 | Msa1335090 | 0.806984 | 6.308863e-50 | -8.615850e-47 |
| Msa0482360 | Msa1336130 | 0.839659 | 1.388608e-57 | -8.615850e-47 |
| Msa0482360 | Msa1369830 | 0.813633 | 2.318749e-51 | -8.615850e-47 |
| Msa0482360 | Msa1374140 | 0.825661 | 4.150677e-54 | -8.615850e-47 |
| Msa0482360 | Msa1375640 | 0.870781 | 1.125747e-66 | -8.615850e-47 |
| Msa0482360 | Msa1376520 | 0.865634 | 5.123809e-65 | -8.615850e-47 |
| Msa0482360 | Msa1381300 | -0.815272 | 1.006636e-51 | -8.615850e-47 |
| Msa0482360 | Msa1382100 | -0.805665 | 1.196514e-49 | -8.615850e-47 |
| Msa0482360 | Msa1382640 | 0.831393 | 1.712641e-55 | -8.615850e-47 |
| Msa0482360 | Msa1386150 | 0.820886 | 5.410769e-53 | -8.615850e-47 |
| Msa0482360 | Msa1395700 | -0.838766 | 2.366718e-57 | -8.615850e-47 |
| Msa0482360 | Msa1400940 | 0.925755 | 1.192983e-90 | -8.615850e-47 |
| Msa0482360 | Msa1402000 | 0.818493 | 1.904316e-52 | -8.615850e-47 |
| Msa0482360 | Msa1429190 | 0.863331 | 2.686286e-64 | -8.615850e-47 |
| Msa0482360 | Msa1431050 | 0.802162 | 6.394382e-49 | -8.615850e-47 |
| Msa0264890 | Msa0482360 | 0.813740 | 2.195930e-51 | -8.615850e-47 |
| Msa0269660 | Msa0482360 | -0.805070 | 1.594031e-49 | -8.615850e-47 |
| Msa0313680 | Msa0482360 | 0.806172 | 9.358564e-50 | -8.615850e-47 |
| Msa0328790 | Msa0482360 | -0.805686 | 1.184194e-49 | -8.615850e-47 |
| Msa0336550 | Msa0482360 | -0.801898 | 7.244952e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482360 | MtrunA17_Chr4g0057571 | 86.111 | 432 | 26 | 4 | 1 | 398 | 1 | 432 | 0.0 | 696 |
| Msa0482360 | MtrunA17_Chr5g0416121 | 31.358 | 405 | 208 | 9 | 47 | 386 | 40 | 439 | 3.14e-60 | 201 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0482360 | AT3G48530.1 | 62.195 | 410 | 112 | 6 | 24 | 398 | 23 | 424 | 1.81e-173 | 491 |
| Msa0482360 | AT1G69800.1 | 32.258 | 403 | 204 | 7 | 45 | 382 | 35 | 433 | 8.57e-57 | 192 |
| Msa0482360 | AT1G69800.2 | 32.258 | 403 | 204 | 7 | 45 | 382 | 64 | 462 | 2.25e-56 | 192 |
| Msa0482360 | AT1G69800.3 | 32.707 | 266 | 143 | 3 | 45 | 274 | 35 | 300 | 4.82e-39 | 144 |
Find 110 sgRNAs with CRISPR-Local
Find 188 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CATGAACCCCACGGCTATTT+TGG | 0.161714 | 3_3:+88796426 | Msa0482360:CDS |
| GGATCTGCAGCGACAACTTC+TGG | 0.254340 | 3_3:+88795115 | Msa0482360:CDS |
| CTCATCCCAAGTTTGGCTTC+TGG | 0.255910 | 3_3:-88794159 | None:intergenic |
| TCATCCCAAGTTTGGCTTCT+GGG | 0.256233 | 3_3:-88794158 | None:intergenic |
| GGATGAGAGTTGAAGATCTA+TGG | 0.266856 | 3_3:+88794175 | Msa0482360:CDS |
| TCAAAGTTTGACAGAACTTA+TGG | 0.274031 | 3_3:-88796716 | None:intergenic |
| ATGGGCTCCGTTTCTTGCTT+TGG | 0.280669 | 3_3:+88795312 | Msa0482360:CDS |
| TTCAACTCTCATCCCAAGTT+TGG | 0.288163 | 3_3:-88794166 | None:intergenic |
| TTAGTGTGATTAGTCCTTCA+AGG | 0.332347 | 3_3:-88796380 | None:intergenic |
| ACTTCAATGGTTCGAAAGTT+GGG | 0.335155 | 3_3:+88795480 | Msa0482360:CDS |
| GAGAAAAGAAGAGGGAATAA+TGG | 0.336001 | 3_3:+88794104 | Msa0482360:CDS |
| CAAGCATTAAGTTTGTCATT+AGG | 0.345513 | 3_3:-88794222 | None:intergenic |
| TCTTTCCGCTAGTCATAATA+AGG | 0.356461 | 3_3:-88796775 | None:intergenic |
| CAAGCTTACTTTACTTGAAA+GGG | 0.360246 | 3_3:-88795708 | None:intergenic |
| AAACAGGTTCGAGATATTTC+AGG | 0.361042 | 3_3:+88795280 | Msa0482360:intron |
| TTGACAAAGAGCAAATTCAT+AGG | 0.378131 | 3_3:+88796331 | Msa0482360:CDS |
| ATCGGAATAGTTGAGTTTGC+TGG | 0.385140 | 3_3:+88794641 | Msa0482360:CDS |
| TCAATCCAACTAGCATCTTC+AGG | 0.389432 | 3_3:-88794611 | None:intergenic |
| AGTTTGGCTTCTGGGCTCCT+TGG | 0.394246 | 3_3:-88794150 | None:intergenic |
| ATTCTAACATTAGTTAAAAC+AGG | 0.399857 | 3_3:-88796661 | None:intergenic |
| CACACCTTGATGATCTGTTT+TGG | 0.400621 | 3_3:-88795544 | None:intergenic |
| GTGAATTCATTACATGCAAA+AGG | 0.403501 | 3_3:+88796277 | Msa0482360:CDS |
| GACTTCAATGGTTCGAAAGT+TGG | 0.404591 | 3_3:+88795479 | Msa0482360:CDS |
| GGCAAAGGAAAAGCAGAAAC+AGG | 0.426999 | 3_3:-88794258 | None:intergenic |
| TAATGAATTCACTTGACATT+GGG | 0.434316 | 3_3:-88796266 | None:intergenic |
| TCCCTCTACCTGCTAATAGC+AGG | 0.435441 | 3_3:+88796469 | Msa0482360:CDS |
| AGTTTGCTGGAATTGTTGTA+TGG | 0.438748 | 3_3:+88794654 | Msa0482360:CDS |
| GGCTGAAGCTGTGAAAATAT+TGG | 0.439718 | 3_3:+88794544 | Msa0482360:CDS |
| GTTGGAGTGGATGGACTCCT+AGG | 0.442102 | 3_3:-88795022 | None:intergenic |
| AGGAGCCCAGAAGCCAAACT+TGG | 0.447648 | 3_3:+88794153 | Msa0482360:CDS |
| TTATTATGGGACAATGTGTT+GGG | 0.452049 | 3_3:+88793999 | Msa0482360:five_prime_UTR |
| ATTATTATGGGACAATGTGT+TGG | 0.452353 | 3_3:+88793998 | Msa0482360:five_prime_UTR |
| TTGGAGTGGATGGACTCCTA+GGG | 0.452562 | 3_3:-88795021 | None:intergenic |
| GCTCGAGAACTCGAAGCCTT+AGG | 0.456172 | 3_3:+88795088 | Msa0482360:CDS |
| ACAAGCTTACTTTACTTGAA+AGG | 0.464602 | 3_3:-88795709 | None:intergenic |
| CTTGCACTGGTTGGAGTGGA+TGG | 0.469031 | 3_3:-88795031 | None:intergenic |
| CAGAATGTGCCGGACTTCAA+TGG | 0.469578 | 3_3:+88795467 | Msa0482360:CDS |
| AATAAAATCAGATGCTACCT+TGG | 0.469606 | 3_3:+88794523 | Msa0482360:intron |
| GACCTCCGTTAGAAGCTACT+TGG | 0.479934 | 3_3:+88796224 | Msa0482360:CDS |
| AGTAGCTTCTAACGGAGGTC+AGG | 0.486459 | 3_3:-88796221 | None:intergenic |
| GAGTGTTCCTGTGGTAGACT+TGG | 0.493238 | 3_3:+88795390 | Msa0482360:CDS |
| GCTATTGCAGCCGCAGCAAA+CGG | 0.494235 | 3_3:+88795055 | Msa0482360:CDS |
| GAACTCGAAGCCTTAGGCCT+CGG | 0.497616 | 3_3:+88795094 | Msa0482360:CDS |
| GACGATGATGGGAACCTTGA+AGG | 0.502311 | 3_3:+88796366 | Msa0482360:CDS |
| CGCTGCAGATCCGAGGCCTA+AGG | 0.503192 | 3_3:-88795104 | None:intergenic |
| GTCTATGTTGTGGACGATGA+TGG | 0.505650 | 3_3:+88796354 | Msa0482360:CDS |
| CCCTCTACCTGCTAATAGCA+GGG | 0.507334 | 3_3:+88796470 | Msa0482360:CDS |
| GCAATAGCACTTGCACTGGT+TGG | 0.511188 | 3_3:-88795040 | None:intergenic |
| TGTTAAACCCTGCTATTAGC+AGG | 0.522009 | 3_3:-88796477 | None:intergenic |
| GGTGCATCAACATCCACAAC+AGG | 0.523558 | 3_3:-88794590 | None:intergenic |
| ACCAACATCAGATAGTTCCT+TGG | 0.525523 | 3_3:-88795506 | None:intergenic |
| ACCCGCCGTGATTCATATGT+TGG | 0.528785 | 3_3:+88795444 | Msa0482360:CDS |
| AACAGGTTCGAGATATTTCA+GGG | 0.530914 | 3_3:+88795281 | Msa0482360:intron |
| ATGCACCTGAAGATGCTAGT+TGG | 0.531504 | 3_3:+88794606 | Msa0482360:CDS |
| TGAATTCATTACATGCAAAA+GGG | 0.536868 | 3_3:+88796278 | Msa0482360:CDS |
| CCTGTGGTAGACTTGGGTGC+TGG | 0.537100 | 3_3:+88795397 | Msa0482360:CDS |
| ACCCTGCTATTAGCAGGTAG+AGG | 0.541141 | 3_3:-88796471 | None:intergenic |
| CAGGTTGAAGATGTGTATCT+AGG | 0.549376 | 3_3:+88796601 | Msa0482360:three_prime_UTR |
| ACTTTCGAACCATTGAAGTC+CGG | 0.551209 | 3_3:-88795476 | None:intergenic |
| GTAATGAATTCACTTGACAT+TGG | 0.553550 | 3_3:-88796267 | None:intergenic |
| GATGAGAGTTGAAGATCTAT+GGG | 0.553732 | 3_3:+88794176 | Msa0482360:CDS |
| GATCTCTCCAAAGCAAGAAA+CGG | 0.557531 | 3_3:-88795319 | None:intergenic |
| CTTCTCCAAGTAGCTTCTAA+CGG | 0.558499 | 3_3:-88796229 | None:intergenic |
| TGACAGAACTATTACAGTGA+AGG | 0.559685 | 3_3:+88796194 | Msa0482360:intron |
| CCCTGCTATTAGCAGGTAGA+GGG | 0.561914 | 3_3:-88796470 | None:intergenic |
| GTGGATGGACTCCTAGGGGA+TGG | 0.565217 | 3_3:-88795016 | None:intergenic |
| AAGCTTACTTTACTTGAAAG+GGG | 0.565513 | 3_3:-88795707 | None:intergenic |
| ACCAAGGAACTATCTGATGT+TGG | 0.572252 | 3_3:+88795505 | Msa0482360:CDS |
| CATATGTTGGCAGAATGTGC+CGG | 0.573538 | 3_3:+88795457 | Msa0482360:CDS |
| GGCTGCAATAGCACTTGCAC+TGG | 0.573713 | 3_3:-88795044 | None:intergenic |
| TATTCTGAGTGCACCTGTTG+TGG | 0.573842 | 3_3:+88794577 | Msa0482360:CDS |
| CACAGAGAGAGAAAAGAAGA+GGG | 0.578839 | 3_3:+88794096 | Msa0482360:CDS |
| ATATTTCAGGGACATTCCGA+TGG | 0.579686 | 3_3:+88795293 | Msa0482360:CDS |
| AATTCATAGGGTCTATGTTG+TGG | 0.580570 | 3_3:+88796344 | Msa0482360:CDS |
| CTTCAATGGTTCGAAAGTTG+GGG | 0.582143 | 3_3:+88795481 | Msa0482360:CDS |
| ACACAGAGAGAGAAAAGAAG+AGG | 0.584820 | 3_3:+88794095 | Msa0482360:CDS |
| TGACAAAGAGCAAATTCATA+GGG | 0.586419 | 3_3:+88796332 | Msa0482360:CDS |
| GAAATCACCAAAATAGCCGT+GGG | 0.590135 | 3_3:-88796433 | None:intergenic |
| CTTAGAAAGCAGCAAAAGCA+TGG | 0.590532 | 3_3:-88795356 | None:intergenic |
| GATGGACTCCTAGGGGATGG+AGG | 0.592826 | 3_3:-88795013 | None:intergenic |
| GATCTTGATGAACTTGACAA+TGG | 0.594417 | 3_3:+88795733 | Msa0482360:CDS |
| GGAGCCCAGAAGCCAAACTT+GGG | 0.598020 | 3_3:+88794154 | Msa0482360:CDS |
| AGAAATCACCAAAATAGCCG+TGG | 0.598829 | 3_3:-88796434 | None:intergenic |
| AGCACTTGCACTGGTTGGAG+TGG | 0.599023 | 3_3:-88795035 | None:intergenic |
| GTTCACCTTATTATGACTAG+CGG | 0.600070 | 3_3:+88796770 | Msa0482360:three_prime_UTR |
| GCCAACATATGAATCACGGC+GGG | 0.600876 | 3_3:-88795445 | None:intergenic |
| AGTCTGAACCTCCATCCCCT+AGG | 0.601038 | 3_3:+88795005 | Msa0482360:intron |
| AGAAGAGGGAATAATGGCAA+TGG | 0.605880 | 3_3:+88794110 | Msa0482360:CDS |
| TCTATGTTGTGGACGATGAT+GGG | 0.613189 | 3_3:+88796355 | Msa0482360:CDS |
| AAGCAAGAAACGGAGCCCAT+CGG | 0.613620 | 3_3:-88795309 | None:intergenic |
| AGATCTATGGGATGTTCAAG+AGG | 0.614406 | 3_3:+88794188 | Msa0482360:CDS |
| CACTAAGAGATATCATCTCA+AGG | 0.615021 | 3_3:+88796397 | Msa0482360:CDS |
| TTCTGCCAACATATGAATCA+CGG | 0.617203 | 3_3:-88795449 | None:intergenic |
| AGTGTTCCTGTGGTAGACTT+GGG | 0.619646 | 3_3:+88795391 | Msa0482360:CDS |
| GTTCGAAAGTTGGGGAACCA+AGG | 0.622320 | 3_3:+88795489 | Msa0482360:CDS |
| CTACAATGAGAGAGATGCCA+AGG | 0.622743 | 3_3:+88794133 | Msa0482360:CDS |
| CCAGCACCCAAGTCTACCAC+AGG | 0.626540 | 3_3:-88795397 | None:intergenic |
| AAGTTGTCGCTGCAGATCCG+AGG | 0.626836 | 3_3:-88795111 | None:intergenic |
| AGTTGGATTGATAGATACAT+CGG | 0.633207 | 3_3:+88794623 | Msa0482360:CDS |
| TATTTCAGGGACATTCCGAT+GGG | 0.633257 | 3_3:+88795294 | Msa0482360:CDS |
| AAAAGTATTTCCGTTTGCTG+CGG | 0.635232 | 3_3:-88795065 | None:intergenic |
| CAAAATGAAGAGTGTTCCTG+TGG | 0.635403 | 3_3:+88795381 | Msa0482360:CDS |
| TGGAGTGGATGGACTCCTAG+GGG | 0.642969 | 3_3:-88795020 | None:intergenic |
| TGAACTTTATAAGAACACCA+AGG | 0.657415 | 3_3:+88795165 | Msa0482360:CDS |
| GACACCAAAACAGATCATCA+AGG | 0.660300 | 3_3:+88795540 | Msa0482360:CDS |
| ATAGCAGGGTTTAACAGACA+TGG | 0.671919 | 3_3:+88796484 | Msa0482360:exon |
| CTCCAAGTAGCTTCTAACGG+AGG | 0.681992 | 3_3:-88796226 | None:intergenic |
| AGGCTAGTACATGAACCCCA+CGG | 0.706623 | 3_3:+88796417 | Msa0482360:CDS |
| TGCCAACATATGAATCACGG+CGG | 0.717560 | 3_3:-88795446 | None:intergenic |
| AAATCACCAAAATAGCCGTG+GGG | 0.760400 | 3_3:-88796432 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTTTCAGTTTATTATTAT+GGG | + | chr3_3:88793986-88794005 | Msa0482360:five_prime_UTR | 10.0% |
| !!! | TTAATATATGTACTTTTTGT+TGG | + | chr3_3:88794857-88794876 | Msa0482360:intron | 15.0% |
| !! | AAAAATATGTATTTATCTTC+AGG | + | chr3_3:88796582-88796601 | Msa0482360:three_prime_UTR | 15.0% |
| !! | TATAATCATGATAGATTTCT+GGG | - | chr3_3:88795918-88795937 | None:intergenic | 20.0% |
| !! | TTTCATTACTTAATACTCAT+TGG | + | chr3_3:88796159-88796178 | Msa0482360:intron | 20.0% |
| !!! | TTTTTGAAATAATTCTTCAG+AGG | + | chr3_3:88796552-88796571 | Msa0482360:three_prime_UTR | 20.0% |
| !! | ATTCTAACATTAGTTAAAAC+AGG | - | chr3_3:88796664-88796683 | None:intergenic | 20.0% |
| !!! | TGTTTTAACTAATGTTAGAA+TGG | + | chr3_3:88796663-88796682 | Msa0482360:three_prime_UTR | 20.0% |
| !!! | GTTTTAACTAATGTTAGAAT+GGG | + | chr3_3:88796664-88796683 | Msa0482360:three_prime_UTR | 20.0% |
| ! | TCACTTTCAGAATAAAAATG+AGG | + | chr3_3:88794724-88794743 | Msa0482360:intron | 25.0% |
| ! | AGATGGATGAATTTAATACA+TGG | + | chr3_3:88794881-88794900 | Msa0482360:intron | 25.0% |
| ! | AATTATGCAGAATTCATACT+TGG | - | chr3_3:88795607-88795626 | None:intergenic | 25.0% |
| !! | TGGATTATTTCATTCTTTTC+AGG | + | chr3_3:88795753-88795772 | Msa0482360:CDS | 25.0% |
| ! | ATAATCATGATAGATTTCTG+GGG | - | chr3_3:88795917-88795936 | None:intergenic | 25.0% |
| ! | CTATAATCATGATAGATTTC+TGG | - | chr3_3:88795919-88795938 | None:intergenic | 25.0% |
| ! | CAGAAATCTATCATGATTAT+AGG | + | chr3_3:88795917-88795936 | Msa0482360:intron | 25.0% |
| ! | GAAAAAAGATATTAGCAATG+TGG | - | chr3_3:88796118-88796137 | None:intergenic | 25.0% |
| ! | TAATGAATTCACTTGACATT+GGG | - | chr3_3:88796269-88796288 | None:intergenic | 25.0% |
| ! | TGAATTCATTACATGCAAAA+GGG | + | chr3_3:88796278-88796297 | Msa0482360:CDS | 25.0% |
| !!! | TATTTTGGTGATTTCTTTGA+TGG | + | chr3_3:88796441-88796460 | Msa0482360:CDS | 25.0% |
| !! | CTTTTATGTACTGTAAATTC+TGG | + | chr3_3:88796688-88796707 | Msa0482360:three_prime_UTR | 25.0% |
| ATTATTATGGGACAATGTGT+TGG | + | chr3_3:88793998-88794017 | Msa0482360:five_prime_UTR | 30.0% | |
| TTATTATGGGACAATGTGTT+GGG | + | chr3_3:88793999-88794018 | Msa0482360:five_prime_UTR | 30.0% | |
| CAAGCATTAAGTTTGTCATT+AGG | - | chr3_3:88794225-88794244 | None:intergenic | 30.0% | |
| ! | CATGCACATAATTTTCATCT+GGG | - | chr3_3:88794368-88794387 | None:intergenic | 30.0% |
| ! | ACATGCACATAATTTTCATC+TGG | - | chr3_3:88794369-88794388 | None:intergenic | 30.0% |
| ACGATAGTTTATCAGAATCA+TGG | + | chr3_3:88794397-88794416 | Msa0482360:intron | 30.0% | |
| AATAAAATCAGATGCTACCT+TGG | + | chr3_3:88794523-88794542 | Msa0482360:intron | 30.0% | |
| AGTTGGATTGATAGATACAT+CGG | + | chr3_3:88794623-88794642 | Msa0482360:CDS | 30.0% | |
| TTGCAAGTTTCAGATTCATA+TGG | - | chr3_3:88794763-88794782 | None:intergenic | 30.0% | |
| !! | ATGTACTTTTTGTTGGTAGA+TGG | + | chr3_3:88794864-88794883 | Msa0482360:intron | 30.0% |
| GAAAATCACTTCAATAGAAC+AGG | - | chr3_3:88794938-88794957 | None:intergenic | 30.0% | |
| ! | AGCTAATGTGATAATGTTGT+TGG | + | chr3_3:88794981-88795000 | Msa0482360:intron | 30.0% |
| TGAACTTTATAAGAACACCA+AGG | + | chr3_3:88795165-88795184 | Msa0482360:CDS | 30.0% | |
| AATACAAACTCATTAGTAGC+TGG | - | chr3_3:88795232-88795251 | None:intergenic | 30.0% | |
| ACACACATTTAAGAAATGCA+GGG | - | chr3_3:88795655-88795674 | None:intergenic | 30.0% | |
| CTTAAATGTGTGTGCATATA+TGG | + | chr3_3:88795662-88795681 | Msa0482360:intron | 30.0% | |
| AAGCTTACTTTACTTGAAAG+GGG | - | chr3_3:88795710-88795729 | None:intergenic | 30.0% | |
| CAAGCTTACTTTACTTGAAA+GGG | - | chr3_3:88795711-88795730 | None:intergenic | 30.0% | |
| ACAAGCTTACTTTACTTGAA+AGG | - | chr3_3:88795712-88795731 | None:intergenic | 30.0% | |
| !!! | TCATTCTTTTCAGGTTTATG+AGG | + | chr3_3:88795762-88795781 | Msa0482360:intron | 30.0% |
| TCATCTCTTTAAATGCTTGA+AGG | - | chr3_3:88795798-88795817 | None:intergenic | 30.0% | |
| TTCAAGCATTTAAAGAGATG+AGG | + | chr3_3:88795797-88795816 | Msa0482360:intron | 30.0% | |
| TTAAAGAGATGAGGAAAAAG+AGG | + | chr3_3:88795806-88795825 | Msa0482360:intron | 30.0% | |
| TAAAGAGATGAGGAAAAAGA+GGG | + | chr3_3:88795807-88795826 | Msa0482360:intron | 30.0% | |
| ! | ATCACAATTTAAAACCTCTG+TGG | - | chr3_3:88795950-88795969 | None:intergenic | 30.0% |
| AACATTTCTCAGCAAAATCA+AGG | - | chr3_3:88795991-88796010 | None:intergenic | 30.0% | |
| CTGAGAAATGTTGTCAAATA+TGG | + | chr3_3:88795999-88796018 | Msa0482360:intron | 30.0% | |
| ! | CTAGACACAGTTCTAATAAA+AGG | - | chr3_3:88796094-88796113 | None:intergenic | 30.0% |
| GTAATGAATTCACTTGACAT+TGG | - | chr3_3:88796270-88796289 | None:intergenic | 30.0% | |
| GTGAATTCATTACATGCAAA+AGG | + | chr3_3:88796277-88796296 | Msa0482360:CDS | 30.0% | |
| TTGACAAAGAGCAAATTCAT+AGG | + | chr3_3:88796331-88796350 | Msa0482360:CDS | 30.0% | |
| TGACAAAGAGCAAATTCATA+GGG | + | chr3_3:88796332-88796351 | Msa0482360:CDS | 30.0% | |
| TCAAAGTTTGACAGAACTTA+TGG | - | chr3_3:88796719-88796738 | None:intergenic | 30.0% | |
| GAGAAAAGAAGAGGGAATAA+TGG | + | chr3_3:88794104-88794123 | Msa0482360:CDS | 35.0% | |
| GATGAGAGTTGAAGATCTAT+GGG | + | chr3_3:88794176-88794195 | Msa0482360:CDS | 35.0% | |
| !!! | AAACTACCTTGGTTTTTAGC+AGG | - | chr3_3:88794282-88794301 | None:intergenic | 35.0% |
| AGATACACACTAAACTACCT+TGG | - | chr3_3:88794293-88794312 | None:intergenic | 35.0% | |
| ATTAGTCACACATGCATGTT+TGG | - | chr3_3:88794462-88794481 | None:intergenic | 35.0% | |
| !! | AGTTTGCTGGAATTGTTGTA+TGG | + | chr3_3:88794654-88794673 | Msa0482360:CDS | 35.0% |
| ! | TGTTGTATGGATTTTGCATC+AGG | + | chr3_3:88794667-88794686 | Msa0482360:CDS | 35.0% |
| !! | AAAAGTATTTCCGTTTGCTG+CGG | - | chr3_3:88795068-88795087 | None:intergenic | 35.0% |
| !!! | AACTTCTGGAAACTTTTTCG+AGG | + | chr3_3:88795129-88795148 | Msa0482360:CDS | 35.0% |
| TAGACATTGCAAAACAACCT+TGG | - | chr3_3:88795185-88795204 | None:intergenic | 35.0% | |
| !!! | TAGCTAACTTTTTCGCAAAC+AGG | + | chr3_3:88795264-88795283 | Msa0482360:intron | 35.0% |
| AAACAGGTTCGAGATATTTC+AGG | + | chr3_3:88795280-88795299 | Msa0482360:intron | 35.0% | |
| AACAGGTTCGAGATATTTCA+GGG | + | chr3_3:88795281-88795300 | Msa0482360:intron | 35.0% | |
| TTCTGCCAACATATGAATCA+CGG | - | chr3_3:88795452-88795471 | None:intergenic | 35.0% | |
| ACTTCAATGGTTCGAAAGTT+GGG | + | chr3_3:88795480-88795499 | Msa0482360:CDS | 35.0% | |
| CACACACATTTAAGAAATGC+AGG | - | chr3_3:88795656-88795675 | None:intergenic | 35.0% | |
| GATCTTGATGAACTTGACAA+TGG | + | chr3_3:88795733-88795752 | Msa0482360:CDS | 35.0% | |
| TCTTTAAATGCTTGAAGGAC+TGG | - | chr3_3:88795793-88795812 | None:intergenic | 35.0% | |
| TGACAGAACTATTACAGTGA+AGG | + | chr3_3:88796194-88796213 | Msa0482360:intron | 35.0% | |
| AATTCATAGGGTCTATGTTG+TGG | + | chr3_3:88796344-88796363 | Msa0482360:CDS | 35.0% | |
| ! | TTAGTGTGATTAGTCCTTCA+AGG | - | chr3_3:88796383-88796402 | None:intergenic | 35.0% |
| CACTAAGAGATATCATCTCA+AGG | + | chr3_3:88796397-88796416 | Msa0482360:CDS | 35.0% | |
| GTTCACCTTATTATGACTAG+CGG | + | chr3_3:88796770-88796789 | Msa0482360:three_prime_UTR | 35.0% | |
| TCTTTCCGCTAGTCATAATA+AGG | - | chr3_3:88796778-88796797 | None:intergenic | 35.0% | |
| ACACAGAGAGAGAAAAGAAG+AGG | + | chr3_3:88794095-88794114 | Msa0482360:CDS | 40.0% | |
| CACAGAGAGAGAAAAGAAGA+GGG | + | chr3_3:88794096-88794115 | Msa0482360:CDS | 40.0% | |
| AGAAGAGGGAATAATGGCAA+TGG | + | chr3_3:88794110-88794129 | Msa0482360:CDS | 40.0% | |
| TTCAACTCTCATCCCAAGTT+TGG | - | chr3_3:88794169-88794188 | None:intergenic | 40.0% | |
| GGATGAGAGTTGAAGATCTA+TGG | + | chr3_3:88794175-88794194 | Msa0482360:CDS | 40.0% | |
| AGATCTATGGGATGTTCAAG+AGG | + | chr3_3:88794188-88794207 | Msa0482360:CDS | 40.0% | |
| !! | TGGTTGGTTTGTCAGAATCA+CGG | - | chr3_3:88794430-88794449 | None:intergenic | 40.0% |
| TCTGACAAACCAACCAATTG+TGG | + | chr3_3:88794434-88794453 | Msa0482360:intron | 40.0% | |
| TGTTTGGTACCACAATTGGT+TGG | - | chr3_3:88794446-88794465 | None:intergenic | 40.0% | |
| TGCATGTTTGGTACCACAAT+TGG | - | chr3_3:88794450-88794469 | None:intergenic | 40.0% | |
| CATGCATGTGTGACTAATTG+AGG | + | chr3_3:88794464-88794483 | Msa0482360:intron | 40.0% | |
| ! | TATTTTCACAGCTTCAGCCA+AGG | - | chr3_3:88794543-88794562 | None:intergenic | 40.0% |
| GGCTGAAGCTGTGAAAATAT+TGG | + | chr3_3:88794544-88794563 | Msa0482360:CDS | 40.0% | |
| TCAATCCAACTAGCATCTTC+AGG | - | chr3_3:88794614-88794633 | None:intergenic | 40.0% | |
| ATCGGAATAGTTGAGTTTGC+TGG | + | chr3_3:88794641-88794660 | Msa0482360:CDS | 40.0% | |
| ATATTTCAGGGACATTCCGA+TGG | + | chr3_3:88795293-88795312 | Msa0482360:CDS | 40.0% | |
| TATTTCAGGGACATTCCGAT+GGG | + | chr3_3:88795294-88795313 | Msa0482360:CDS | 40.0% | |
| GATCTCTCCAAAGCAAGAAA+CGG | - | chr3_3:88795322-88795341 | None:intergenic | 40.0% | |
| CTTAGAAAGCAGCAAAAGCA+TGG | - | chr3_3:88795359-88795378 | None:intergenic | 40.0% | |
| !! | CAAAATGAAGAGTGTTCCTG+TGG | + | chr3_3:88795381-88795400 | Msa0482360:CDS | 40.0% |
| ACTTTCGAACCATTGAAGTC+CGG | - | chr3_3:88795479-88795498 | None:intergenic | 40.0% | |
| GACTTCAATGGTTCGAAAGT+TGG | + | chr3_3:88795479-88795498 | Msa0482360:CDS | 40.0% | |
| CTTCAATGGTTCGAAAGTTG+GGG | + | chr3_3:88795481-88795500 | Msa0482360:CDS | 40.0% | |
| ACCAAGGAACTATCTGATGT+TGG | + | chr3_3:88795505-88795524 | Msa0482360:CDS | 40.0% | |
| ACCAACATCAGATAGTTCCT+TGG | - | chr3_3:88795509-88795528 | None:intergenic | 40.0% | |
| !!! | ATCTGTTTTGGTGTCACAAG+GGG | - | chr3_3:88795535-88795554 | None:intergenic | 40.0% |
| !!! | GATCTGTTTTGGTGTCACAA+GGG | - | chr3_3:88795536-88795555 | None:intergenic | 40.0% |
| !!! | TGATCTGTTTTGGTGTCACA+AGG | - | chr3_3:88795537-88795556 | None:intergenic | 40.0% |
| GACACCAAAACAGATCATCA+AGG | + | chr3_3:88795540-88795559 | Msa0482360:CDS | 40.0% | |
| !! | CACACCTTGATGATCTGTTT+TGG | - | chr3_3:88795547-88795566 | None:intergenic | 40.0% |
| TGCAGAATTCATACTTGGCA+AGG | - | chr3_3:88795602-88795621 | None:intergenic | 40.0% | |
| TTATAGGTATGTCACCACAG+AGG | + | chr3_3:88795933-88795952 | Msa0482360:intron | 40.0% | |
| CTCAGCAAAATCAAGGATTG+TGG | - | chr3_3:88795984-88796003 | None:intergenic | 40.0% | |
| GTTGTCAAATATGGCTGATG+CGG | + | chr3_3:88796008-88796027 | Msa0482360:intron | 40.0% | |
| CTTCTCCAAGTAGCTTCTAA+CGG | - | chr3_3:88796232-88796251 | None:intergenic | 40.0% | |
| TCTATGTTGTGGACGATGAT+GGG | + | chr3_3:88796355-88796374 | Msa0482360:CDS | 40.0% | |
| AAATCACCAAAATAGCCGTG+GGG | - | chr3_3:88796435-88796454 | None:intergenic | 40.0% | |
| GAAATCACCAAAATAGCCGT+GGG | - | chr3_3:88796436-88796455 | None:intergenic | 40.0% | |
| AGAAATCACCAAAATAGCCG+TGG | - | chr3_3:88796437-88796456 | None:intergenic | 40.0% | |
| TGTTAAACCCTGCTATTAGC+AGG | - | chr3_3:88796480-88796499 | None:intergenic | 40.0% | |
| ATAGCAGGGTTTAACAGACA+TGG | + | chr3_3:88796484-88796503 | Msa0482360:exon | 40.0% | |
| ! | CAGGTTGAAGATGTGTATCT+AGG | + | chr3_3:88796601-88796620 | Msa0482360:three_prime_UTR | 40.0% |
| CTACAATGAGAGAGATGCCA+AGG | + | chr3_3:88794133-88794152 | Msa0482360:CDS | 45.0% | |
| ! | TCATCCCAAGTTTGGCTTCT+GGG | - | chr3_3:88794161-88794180 | None:intergenic | 45.0% |
| GGCAAAGGAAAAGCAGAAAC+AGG | - | chr3_3:88794261-88794280 | None:intergenic | 45.0% | |
| !!! | CCTTGGTTTTTAGCAGGCAA+AGG | - | chr3_3:88794276-88794295 | None:intergenic | 45.0% |
| CCTTTGCCTGCTAAAAACCA+AGG | + | chr3_3:88794273-88794292 | Msa0482360:CDS | 45.0% | |
| TATTCTGAGTGCACCTGTTG+TGG | + | chr3_3:88794577-88794596 | Msa0482360:CDS | 45.0% | |
| ATGCACCTGAAGATGCTAGT+TGG | + | chr3_3:88794606-88794625 | Msa0482360:CDS | 45.0% | |
| AGTGTTCCTGTGGTAGACTT+GGG | + | chr3_3:88795391-88795410 | Msa0482360:CDS | 45.0% | |
| TGCCAACATATGAATCACGG+CGG | - | chr3_3:88795449-88795468 | None:intergenic | 45.0% | |
| CATATGTTGGCAGAATGTGC+CGG | + | chr3_3:88795457-88795476 | Msa0482360:CDS | 45.0% | |
| GGCAAGGTTCAATGCAATGA+GGG | - | chr3_3:88795586-88795605 | None:intergenic | 45.0% | |
| TGGCAAGGTTCAATGCAATG+AGG | - | chr3_3:88795587-88795606 | None:intergenic | 45.0% | |
| GAGATGAGGAAAAAGAGGGT+TGG | + | chr3_3:88795811-88795830 | Msa0482360:intron | 45.0% | |
| ATGAGGAAAAAGAGGGTTGG+AGG | + | chr3_3:88795814-88795833 | Msa0482360:intron | 45.0% | |
| TGAGGAAAAAGAGGGTTGGA+GGG | + | chr3_3:88795815-88795834 | Msa0482360:intron | 45.0% | |
| GTGCCTGTAATCAAAAGAGG+TGG | + | chr3_3:88795838-88795857 | Msa0482360:intron | 45.0% | |
| !! | GTGCCACCTCTTTTGATTAC+AGG | - | chr3_3:88795844-88795863 | None:intergenic | 45.0% |
| AATCAAAAGAGGTGGCACCA+CGG | + | chr3_3:88795846-88795865 | Msa0482360:intron | 45.0% | |
| GCTTATATTACCAACTGCCG+TGG | - | chr3_3:88795866-88795885 | None:intergenic | 45.0% | |
| GATGTCTTTGACCGTGATTG+AGG | - | chr3_3:88796034-88796053 | None:intergenic | 45.0% | |
| AAGGTCTGCATCCACAATTC+AGG | - | chr3_3:88796075-88796094 | None:intergenic | 45.0% | |
| GTCTATGTTGTGGACGATGA+TGG | + | chr3_3:88796354-88796373 | Msa0482360:CDS | 45.0% | |
| ! | CTCATCCCAAGTTTGGCTTC+TGG | - | chr3_3:88794162-88794181 | None:intergenic | 50.0% |
| GGTGCATCAACATCCACAAC+AGG | - | chr3_3:88794593-88794612 | None:intergenic | 50.0% | |
| ! | TTGGAGTGGATGGACTCCTA+GGG | - | chr3_3:88795024-88795043 | None:intergenic | 50.0% |
| ! | GCAATAGCACTTGCACTGGT+TGG | - | chr3_3:88795043-88795062 | None:intergenic | 50.0% |
| AAGCAAGAAACGGAGCCCAT+CGG | - | chr3_3:88795312-88795331 | None:intergenic | 50.0% | |
| ATGGGCTCCGTTTCTTGCTT+TGG | + | chr3_3:88795312-88795331 | Msa0482360:CDS | 50.0% | |
| GAGTGTTCCTGTGGTAGACT+TGG | + | chr3_3:88795390-88795409 | Msa0482360:CDS | 50.0% | |
| ACCCGCCGTGATTCATATGT+TGG | + | chr3_3:88795444-88795463 | Msa0482360:CDS | 50.0% | |
| GCCAACATATGAATCACGGC+GGG | - | chr3_3:88795448-88795467 | None:intergenic | 50.0% | |
| CAGAATGTGCCGGACTTCAA+TGG | + | chr3_3:88795467-88795486 | Msa0482360:CDS | 50.0% | |
| GTTCGAAAGTTGGGGAACCA+AGG | + | chr3_3:88795489-88795508 | Msa0482360:CDS | 50.0% | |
| GAGGAAAAAGAGGGTTGGAG+GGG | + | chr3_3:88795816-88795835 | Msa0482360:intron | 50.0% | |
| ! | GGGGTGCCTGTAATCAAAAG+AGG | + | chr3_3:88795835-88795854 | Msa0482360:intron | 50.0% |
| ACAATTCAGGTCGTGACGCA+AGG | - | chr3_3:88796062-88796081 | None:intergenic | 50.0% | |
| TTGCGTCACGACCTGAATTG+TGG | + | chr3_3:88796061-88796080 | Msa0482360:intron | 50.0% | |
| AGTAGCTTCTAACGGAGGTC+AGG | - | chr3_3:88796224-88796243 | None:intergenic | 50.0% | |
| GACCTCCGTTAGAAGCTACT+TGG | + | chr3_3:88796224-88796243 | Msa0482360:CDS | 50.0% | |
| CTCCAAGTAGCTTCTAACGG+AGG | - | chr3_3:88796229-88796248 | None:intergenic | 50.0% | |
| !! | GACGATGATGGGAACCTTGA+AGG | + | chr3_3:88796366-88796385 | Msa0482360:CDS | 50.0% |
| AGGCTAGTACATGAACCCCA+CGG | + | chr3_3:88796417-88796436 | Msa0482360:CDS | 50.0% | |
| ! | CATGAACCCCACGGCTATTT+TGG | + | chr3_3:88796426-88796445 | Msa0482360:CDS | 50.0% |
| TCCCTCTACCTGCTAATAGC+AGG | + | chr3_3:88796469-88796488 | Msa0482360:CDS | 50.0% | |
| CCCTGCTATTAGCAGGTAGA+GGG | - | chr3_3:88796473-88796492 | None:intergenic | 50.0% | |
| CCCTCTACCTGCTAATAGCA+GGG | + | chr3_3:88796470-88796489 | Msa0482360:CDS | 50.0% | |
| ACCCTGCTATTAGCAGGTAG+AGG | - | chr3_3:88796474-88796493 | None:intergenic | 50.0% | |
| ! | AGTTTGGCTTCTGGGCTCCT+TGG | - | chr3_3:88794153-88794172 | None:intergenic | 55.0% |
| AGGAGCCCAGAAGCCAAACT+TGG | + | chr3_3:88794153-88794172 | Msa0482360:CDS | 55.0% | |
| GGAGCCCAGAAGCCAAACTT+GGG | + | chr3_3:88794154-88794173 | Msa0482360:CDS | 55.0% | |
| AGTCTGAACCTCCATCCCCT+AGG | + | chr3_3:88795005-88795024 | Msa0482360:intron | 55.0% | |
| ! | TGGAGTGGATGGACTCCTAG+GGG | - | chr3_3:88795023-88795042 | None:intergenic | 55.0% |
| ! | GTTGGAGTGGATGGACTCCT+AGG | - | chr3_3:88795025-88795044 | None:intergenic | 55.0% |
| !! | CTTGCACTGGTTGGAGTGGA+TGG | - | chr3_3:88795034-88795053 | None:intergenic | 55.0% |
| !! | AGCACTTGCACTGGTTGGAG+TGG | - | chr3_3:88795038-88795057 | None:intergenic | 55.0% |
| GGCTGCAATAGCACTTGCAC+TGG | - | chr3_3:88795047-88795066 | None:intergenic | 55.0% | |
| GCTATTGCAGCCGCAGCAAA+CGG | + | chr3_3:88795055-88795074 | Msa0482360:CDS | 55.0% | |
| GCTCGAGAACTCGAAGCCTT+AGG | + | chr3_3:88795088-88795107 | Msa0482360:CDS | 55.0% | |
| GAACTCGAAGCCTTAGGCCT+CGG | + | chr3_3:88795094-88795113 | Msa0482360:CDS | 55.0% | |
| AAGTTGTCGCTGCAGATCCG+AGG | - | chr3_3:88795114-88795133 | None:intergenic | 55.0% | |
| GGATCTGCAGCGACAACTTC+TGG | + | chr3_3:88795115-88795134 | Msa0482360:CDS | 55.0% | |
| ! | GATGGACTCCTAGGGGATGG+AGG | - | chr3_3:88795016-88795035 | None:intergenic | 60.0% |
| ! | GTGGATGGACTCCTAGGGGA+TGG | - | chr3_3:88795019-88795038 | None:intergenic | 60.0% |
| CCAGCACCCAAGTCTACCAC+AGG | - | chr3_3:88795400-88795419 | None:intergenic | 60.0% | |
| CCTGTGGTAGACTTGGGTGC+TGG | + | chr3_3:88795397-88795416 | Msa0482360:CDS | 60.0% | |
| GGCTGATGCGGCCTCAATCA+CGG | + | chr3_3:88796020-88796039 | Msa0482360:intron | 60.0% | |
| CGCTGCAGATCCGAGGCCTA+AGG | - | chr3_3:88795107-88795126 | None:intergenic | 65.0% | |
| AGAGGTGGCACCACGGCAGT+TGG | + | chr3_3:88795853-88795872 | Msa0482360:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_3 | gene | 88793986 | 88796806 | 88793986 | ID=Msa0482360;Name=Msa0482360 |
| chr3_3 | mRNA | 88793986 | 88796806 | 88793986 | ID=Msa0482360-mRNA-1;Parent=Msa0482360;Name=Msa0482360-mRNA-1;_AED=0.12;_eAED=0.13;_QI=101|0.4|0.66|1|0.6|0.83|6|309|398 |
| chr3_3 | exon | 88793986 | 88794294 | 88793986 | ID=Msa0482360-mRNA-1:exon:26042;Parent=Msa0482360-mRNA-1 |
| chr3_3 | exon | 88794534 | 88794688 | 88794534 | ID=Msa0482360-mRNA-1:exon:26043;Parent=Msa0482360-mRNA-1 |
| chr3_3 | exon | 88795007 | 88795186 | 88795007 | ID=Msa0482360-mRNA-1:exon:26044;Parent=Msa0482360-mRNA-1 |
| chr3_3 | exon | 88795286 | 88795561 | 88795286 | ID=Msa0482360-mRNA-1:exon:26045;Parent=Msa0482360-mRNA-1 |
| chr3_3 | exon | 88795695 | 88795774 | 88795695 | ID=Msa0482360-mRNA-1:exon:26046;Parent=Msa0482360-mRNA-1 |
| chr3_3 | exon | 88796200 | 88796806 | 88796200 | ID=Msa0482360-mRNA-1:exon:26047;Parent=Msa0482360-mRNA-1 |
| chr3_3 | five_prime_UTR | 88793986 | 88794086 | 88793986 | ID=Msa0482360-mRNA-1:five_prime_utr;Parent=Msa0482360-mRNA-1 |
| chr3_3 | CDS | 88794087 | 88794294 | 88794087 | ID=Msa0482360-mRNA-1:cds;Parent=Msa0482360-mRNA-1 |
| chr3_3 | CDS | 88794534 | 88794688 | 88794534 | ID=Msa0482360-mRNA-1:cds;Parent=Msa0482360-mRNA-1 |
| chr3_3 | CDS | 88795007 | 88795186 | 88795007 | ID=Msa0482360-mRNA-1:cds;Parent=Msa0482360-mRNA-1 |
| chr3_3 | CDS | 88795286 | 88795561 | 88795286 | ID=Msa0482360-mRNA-1:cds;Parent=Msa0482360-mRNA-1 |
| chr3_3 | CDS | 88795695 | 88795774 | 88795695 | ID=Msa0482360-mRNA-1:cds;Parent=Msa0482360-mRNA-1 |
| chr3_3 | CDS | 88796200 | 88796497 | 88796200 | ID=Msa0482360-mRNA-1:cds;Parent=Msa0482360-mRNA-1 |
| chr3_3 | three_prime_UTR | 88796498 | 88796806 | 88796498 | ID=Msa0482360-mRNA-1:three_prime_utr;Parent=Msa0482360-mRNA-1 |
| Gene Sequence |
| Protein sequence |
