AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0947420

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0947420 MtrunA17_Chr6g0461941 95.714 210 9 0 10 219 1 210 5.37e-119 337
Msa0947420 MtrunA17_Chr7g0221471 50.000 162 64 3 6 166 27 172 4.01e-44 145
Msa0947420 MtrunA17_Chr7g0221501 50.676 148 57 2 11 158 33 164 3.07e-41 138
Msa0947420 MtrunA17_Chr3g0131601 58.268 127 46 3 14 138 59 180 1.08e-30 113
Msa0947420 MtrunA17_Chr8g0383591 79.365 63 13 0 26 88 142 204 1.28e-30 114
Msa0947420 MtrunA17_Chr8g0375031 62.338 77 21 1 8 84 112 180 2.96e-28 106
Msa0947420 MtrunA17_Chr8g0344961 73.016 63 17 0 24 86 119 181 9.41e-28 108
Msa0947420 MtrunA17_Chr4g0044871 71.429 63 18 0 29 91 96 158 1.39e-27 104
Msa0947420 MtrunA17_Chr2g0295421 60.714 84 29 1 19 102 86 165 1.52e-27 105
Msa0947420 MtrunA17_Chr8g0335331 73.846 65 16 1 25 88 121 185 1.57e-27 103
Msa0947420 MtrunA17_Chr4g0055761 69.863 73 21 1 25 96 141 213 1.82e-27 105
Msa0947420 MtrunA17_Chr4g0044881 68.657 67 21 0 25 91 110 176 1.92e-27 104
Msa0947420 MtrunA17_Chr2g0283181 65.789 76 25 1 11 85 131 206 1.96e-27 105
Msa0947420 MtrunA17_Chr4g0046161 74.194 62 15 1 25 85 53 114 2.06e-27 101
Msa0947420 MtrunA17_Chr4g0044911 71.429 63 18 0 29 91 96 158 2.63e-27 104
Msa0947420 MtrunA17_Chr8g0335311 57.143 91 38 1 29 118 96 186 3.70e-27 102
Msa0947420 MtrunA17_Chr4g0044901 68.116 69 20 1 29 95 96 164 3.84e-27 103
Msa0947420 MtrunA17_Chr2g0334031 71.429 63 18 0 24 86 112 174 4.00e-27 106
Msa0947420 MtrunA17_Chr2g0283171 73.770 61 15 1 26 85 60 120 4.17e-27 101
Msa0947420 MtrunA17_Chr3g0129421 52.817 142 53 4 24 154 165 303 6.27e-27 105
Msa0947420 MtrunA17_Chr7g0250721 64.865 74 25 1 27 99 59 132 8.87e-27 102
Msa0947420 MtrunA17_Chr8g0335321 73.016 63 16 1 27 88 94 156 1.46e-26 101
Msa0947420 MtrunA17_Chr1g0195151 59.494 79 32 0 24 102 72 150 1.68e-26 103
Msa0947420 MtrunA17_Chr2g0316931 55.670 97 33 1 24 120 26 112 1.98e-26 101
Msa0947420 MtrunA17_Chr4g0055801 77.419 62 13 1 25 85 150 211 3.08e-26 103
Msa0947420 MtrunA17_Chr4g0055781 75.806 62 14 1 25 85 98 159 3.65e-26 101
Msa0947420 MtrunA17_Chr2g0282651 52.000 100 40 1 25 116 66 165 4.37e-26 101
Msa0947420 MtrunA17_Chr7g0250731 70.769 65 18 1 27 90 59 123 5.49e-26 100
Msa0947420 MtrunA17_Chr7g0250711 73.016 63 16 1 27 88 58 120 7.45e-26 99.8
Msa0947420 MtrunA17_Chr5g0396911 52.688 93 27 2 27 119 110 185 1.08e-24 99.0
Msa0947420 MtrunA17_Chr7g0275841 50.000 92 45 1 5 96 5 95 1.33e-24 95.5
Msa0947420 MtrunA17_Chr5g0438831 55.422 83 37 0 3 85 20 102 1.98e-24 97.8
Msa0947420 MtrunA17_Chr1g0170531 69.841 63 18 1 24 85 84 146 2.00e-24 96.7
Msa0947420 MtrunA17_Chr7g0232261 54.321 81 37 0 12 92 44 124 3.68e-24 95.9
Msa0947420 MtrunA17_Chr3g0126321 59.722 72 27 1 27 96 111 182 7.64e-24 97.4
Msa0947420 MtrunA17_Chr6g0486701 62.500 64 24 0 29 92 44 107 1.75e-23 94.0
Msa0947420 MtrunA17_Chr4g0026881 60.000 75 27 2 15 88 85 157 1.85e-23 94.4
Msa0947420 MtrunA17_Chr5g0438801 58.667 75 30 1 12 85 33 107 2.49e-23 94.7
Msa0947420 MtrunA17_Chr3g0140161 48.544 103 44 2 29 130 43 137 2.80e-23 92.4
Msa0947420 MtrunA17_Chr1g0196871 70.000 60 17 1 27 85 14 73 2.82e-23 89.7
Msa0947420 MtrunA17_Chr1g0158971 66.667 63 19 1 22 84 110 170 3.33e-23 95.5
Msa0947420 MtrunA17_Chr2g0323171 48.352 91 45 1 28 116 64 154 3.82e-23 92.0
Msa0947420 MtrunA17_Chr8g0390091 62.500 64 24 0 29 92 37 100 5.18e-23 92.8
Msa0947420 MtrunA17_Chr1g0184081 59.259 81 30 2 12 89 2 82 5.73e-23 90.5
Msa0947420 MtrunA17_Chr8g0334801 62.500 64 24 0 29 92 52 115 1.09e-22 91.3
Msa0947420 MtrunA17_Chr3g0099871 70.492 61 18 0 25 85 23 83 1.50e-22 91.7
Msa0947420 MtrunA17_Chr1g0196781 59.722 72 28 1 16 87 140 210 1.51e-22 93.2
Msa0947420 MtrunA17_Chr1g0186731 58.442 77 27 2 14 85 2 78 1.51e-22 89.4
Msa0947420 MtrunA17_Chr2g0282621 59.211 76 29 1 25 98 11 86 1.70e-22 90.1
Msa0947420 MtrunA17_Chr5g0425561 67.213 61 20 0 27 87 171 231 1.93e-22 93.6
Msa0947420 MtrunA17_Chr8g0387801 49.020 102 41 1 27 128 105 195 2.32e-22 92.8
Msa0947420 MtrunA17_Chr3g0115631 67.213 61 20 0 27 87 148 208 2.39e-22 93.2
Msa0947420 MtrunA17_Chr8g0382491 54.217 83 31 1 15 97 106 181 2.86e-22 92.0
Msa0947420 MtrunA17_Chr5g0399441 57.534 73 31 0 20 92 19 91 3.35e-22 89.4
Msa0947420 MtrunA17_Chr2g0297331 60.000 70 27 1 17 85 2 71 4.38e-22 87.8
Msa0947420 MtrunA17_Chr2g0331231 57.812 64 27 0 29 92 41 104 4.87e-22 89.7
Msa0947420 MtrunA17_Chr8g0340311 50.000 90 38 2 10 92 21 110 5.75e-22 89.4
Msa0947420 MtrunA17_Chr8g0346741 45.455 88 48 0 10 97 20 107 6.26e-22 88.6
Msa0947420 MtrunA17_Chr4g0023411 61.538 65 24 1 28 91 64 128 7.76e-22 89.0
Msa0947420 MtrunA17_Chr7g0261101 68.254 63 19 1 25 86 16 78 9.06e-22 87.4
Msa0947420 MtrunA17_Chr4g0055951 60.938 64 25 0 29 92 74 137 1.03e-21 90.1
Msa0947420 MtrunA17_Chr4g0026931 67.742 62 19 1 26 86 128 189 1.03e-21 90.5
Msa0947420 MtrunA17_Chr7g0261151 68.254 63 19 1 25 86 16 78 1.14e-21 87.0
Msa0947420 MtrunA17_Chr5g0432821 42.241 116 60 3 18 127 113 227 1.29e-21 90.1
Msa0947420 MtrunA17_Chr7g0257911 67.797 59 19 0 29 87 31 89 1.37e-21 90.1
Msa0947420 MtrunA17_Chr7g0261181 58.140 86 30 2 29 113 13 93 2.29e-21 85.9
Msa0947420 MtrunA17_Chr4g0003421 65.574 61 21 0 25 85 36 96 2.41e-21 88.6
Msa0947420 MtrunA17_Chr1g0184011 57.333 75 30 2 11 84 67 140 2.73e-21 88.2
Msa0947420 MtrunA17_Chr2g0333011 62.500 64 24 0 27 90 5 68 3.60e-21 86.7
Msa0947420 MtrunA17_Chr2g0324131 62.903 62 23 0 27 88 216 277 3.72e-21 90.5
Msa0947420 MtrunA17_Chr8g0367911 67.857 56 18 0 29 84 44 99 3.82e-21 89.0
Msa0947420 MtrunA17_Chr1g0189941 52.055 73 31 1 28 96 23 95 7.80e-21 85.5
Msa0947420 MtrunA17_Chr1g0183981 65.000 60 20 1 26 84 72 131 1.07e-20 86.3
Msa0947420 MtrunA17_Chr3g0137174 61.667 60 23 0 26 85 5 64 1.46e-20 85.5
Msa0947420 MtrunA17_Chr4g0063751 64.407 59 21 0 27 85 5 63 1.50e-20 85.9
Msa0947420 MtrunA17_Chr1g0184031 59.091 66 26 1 20 84 75 140 1.64e-20 85.9
Msa0947420 MtrunA17_Chr4g0002631 63.333 60 22 0 26 85 5 64 1.83e-20 85.1
Msa0947420 MtrunA17_Chr1g0184061 63.333 60 21 1 26 84 74 133 3.42e-20 85.1
Msa0947420 MtrunA17_Chr1g0184071 54.667 75 32 2 12 84 51 125 3.42e-20 84.0
Msa0947420 MtrunA17_Chr7g0265851 61.538 65 25 0 29 93 24 88 4.10e-20 84.7
Msa0947420 MtrunA17_Chr5g0437671 64.407 59 21 0 29 87 85 143 4.49e-20 87.4
Msa0947420 MtrunA17_Chr3g0134161 55.556 63 28 0 26 88 42 104 6.62e-20 83.2
Msa0947420 MtrunA17_Chr1g0201671 52.941 119 45 2 36 146 146 261 9.92e-20 86.3
Msa0947420 MtrunA17_Chr5g0437371 66.071 56 19 0 29 84 66 121 1.03e-19 85.9
Msa0947420 MtrunA17_Chr1g0186671 67.241 58 18 1 29 85 19 76 1.11e-19 81.6
Msa0947420 MtrunA17_Chr4g0066931 62.500 56 21 0 29 84 53 108 1.50e-19 85.5
Msa0947420 MtrunA17_Chr4g0017851 54.688 64 29 0 29 92 118 181 1.75e-19 84.7
Msa0947420 MtrunA17_Chr6g0453661 48.889 90 34 2 26 103 35 124 2.46e-19 85.5
Msa0947420 MtrunA17_Chr1g0153151 56.452 62 27 0 27 88 42 103 3.41e-19 81.6
Msa0947420 MtrunA17_Chr5g0401871 49.275 69 35 0 22 90 18 86 5.24e-19 81.3
Msa0947420 MtrunA17_Chr5g0412641 66.071 56 19 0 29 84 46 101 7.10e-19 84.0
Msa0947420 MtrunA17_Chr4g0062551 53.623 69 30 1 17 85 43 109 8.35e-19 79.3
Msa0947420 MtrunA17_Chr2g0286161 62.500 56 21 0 29 84 50 105 1.01e-18 82.4
Msa0947420 MtrunA17_Chr6g0486711 64.062 64 23 0 29 92 49 112 1.11e-18 81.3
Msa0947420 MtrunA17_Chr1g0183961 70.690 58 16 1 29 85 27 84 1.18e-18 79.3
Msa0947420 MtrunA17_Chr5g0396191 62.500 64 24 0 29 92 11 74 1.42e-18 80.1
Msa0947420 MtrunA17_Chr7g0253424 52.000 75 32 2 29 102 39 110 1.57e-18 81.6
Msa0947420 MtrunA17_Chr7g0217991 46.429 84 39 1 17 100 30 107 2.12e-18 83.2
Msa0947420 MtrunA17_Chr5g0396171 52.381 63 30 0 31 93 26 88 2.63e-18 77.0
Msa0947420 MtrunA17_Chr4g0062161 53.623 69 30 1 17 85 43 109 3.04e-18 79.7
Msa0947420 MtrunA17_Chr6g0461271 51.429 70 34 0 20 89 24 93 3.67e-18 81.3
Msa0947420 MtrunA17_Chr1g0146191 58.904 73 30 0 20 92 38 110 9.11e-18 79.3
Msa0947420 MtrunA17_Chr6g0473741 42.391 92 52 1 29 120 66 156 9.84e-18 78.6
Msa0947420 MtrunA17_Chr1g0155751 59.722 72 22 1 29 100 39 103 9.99e-18 79.3
Msa0947420 MtrunA17_Chr1g0170471 60.317 63 22 2 36 97 90 150 1.13e-17 77.4
Msa0947420 MtrunA17_Chr7g0252381 62.500 56 21 0 29 84 42 97 1.41e-17 79.3
Msa0947420 MtrunA17_Chr3g0083501 60.784 51 20 0 36 86 2 52 2.24e-17 73.9
Msa0947420 MtrunA17_Chr8g0378811 47.500 80 37 1 10 84 31 110 2.60e-17 78.2
Msa0947420 MtrunA17_Chr6g0473861 43.011 93 52 1 29 121 63 154 2.78e-17 78.6
Msa0947420 MtrunA17_Chr6g0473931 40.625 96 56 1 29 124 33 127 3.03e-17 76.6
Msa0947420 MtrunA17_Chr7g0261201 66.667 63 20 1 25 86 94 156 7.10e-17 76.6
Msa0947420 MtrunA17_Chr4g0057241 54.286 70 29 2 26 93 10 78 7.12e-17 75.1
Msa0947420 MtrunA17_Chr1g0186681 53.846 78 33 3 10 85 1 77 7.79e-17 73.9
Msa0947420 MtrunA17_Chr6g0473941 41.935 93 53 1 29 121 33 124 9.56e-17 75.5
Msa0947420 MtrunA17_Chr1g0200931 48.529 68 34 1 18 84 12 79 1.18e-16 73.9
Msa0947420 MtrunA17_Chr1g0183931 65.625 64 21 1 26 88 98 161 1.36e-16 75.9
Msa0947420 MtrunA17_Chr1g0203861 51.471 68 33 0 29 96 44 111 1.85e-16 74.7
Msa0947420 MtrunA17_Chr8g0345531 53.125 64 29 1 13 76 101 163 2.27e-16 76.6
Msa0947420 MtrunA17_Chr8g0350701 48.611 72 34 1 27 98 25 93 3.06e-16 75.9
Msa0947420 MtrunA17_Chr6g0473961 32.231 121 80 2 29 149 54 172 3.22e-16 74.3
Msa0947420 MtrunA17_Chr1g0186741 66.154 65 21 1 25 88 69 133 3.24e-16 74.3
Msa0947420 MtrunA17_Chr1g0209891 50.000 76 34 1 29 100 54 129 3.41e-16 75.5
Msa0947420 MtrunA17_Chr6g0473781 40.860 93 54 1 29 121 57 148 3.47e-16 74.3
Msa0947420 MtrunA17_Chr3g0142081 60.317 63 25 0 29 91 39 101 3.65e-16 74.3
Msa0947420 MtrunA17_Chr6g0473981 40.000 95 56 1 29 123 54 147 4.20e-16 74.7
Msa0947420 MtrunA17_Chr6g0464581 45.946 111 55 2 36 146 187 292 4.62e-16 76.3
Msa0947420 MtrunA17_Chr1g0150691 50.746 67 29 1 27 93 20 82 5.46e-16 73.9
Msa0947420 MtrunA17_Chr3g0136551 42.857 77 44 0 20 96 56 132 5.79e-16 74.7
Msa0947420 MtrunA17_Chr1g0150631 47.436 78 35 2 18 93 25 98 6.41e-16 73.9
Msa0947420 MtrunA17_Chr1g0150671 52.542 59 28 0 27 85 44 102 6.44e-16 74.7
Msa0947420 MtrunA17_Chr2g0301191 44.737 76 41 1 10 85 1 75 7.49e-16 73.2
Msa0947420 MtrunA17_Chr5g0396301 33.094 139 77 4 27 149 16 154 7.94e-16 72.0
Msa0947420 MtrunA17_Chr4g0042761 47.297 74 39 0 26 99 45 118 9.34e-16 74.7
Msa0947420 MtrunA17_Chr1g0150661 50.847 59 29 0 27 85 33 91 1.00e-15 73.2
Msa0947420 MtrunA17_Chr1g0167781 60.563 71 25 2 17 84 68 138 1.01e-15 73.2
Msa0947420 MtrunA17_Chr7g0243431 57.143 63 20 1 29 84 78 140 1.58e-15 74.7
Msa0947420 MtrunA17_Chr1g0149331 48.980 98 37 2 29 118 7 99 1.78e-15 72.0
Msa0947420 MtrunA17_Chr5g0396181 48.000 100 47 2 29 128 21 115 1.87e-15 72.0
Msa0947420 MtrunA17_Chr6g0473881 50.000 68 34 0 29 96 110 177 2.07e-15 73.6
Msa0947420 MtrunA17_Chr2g0321071 42.342 111 53 4 29 128 47 157 2.49e-15 72.0
Msa0947420 MtrunA17_Chr6g0473971 48.529 68 35 0 29 96 54 121 2.66e-15 72.4
Msa0947420 MtrunA17_Chr8g0345551 64.583 48 17 0 29 76 117 164 2.97e-15 73.6
Msa0947420 MtrunA17_Chr7g0261171 61.538 65 24 1 25 88 81 145 3.12e-15 72.0
Msa0947420 MtrunA17_Chr4g0002771 53.261 92 39 3 7 96 56 145 5.27e-15 70.9
Msa0947420 MtrunA17_Chr2g0301171 50.877 57 28 0 29 85 19 75 9.22e-15 70.1
Msa0947420 MtrunA17_Chr6g0474001 38.710 93 56 1 29 121 54 145 1.53e-14 70.5
Msa0947420 MtrunA17_Chr3g0137831 62.903 62 23 0 24 85 3 64 1.66e-14 69.7
Msa0947420 MtrunA17_Chr6g0473771 53.571 56 26 0 29 84 43 98 2.37e-14 67.0
Msa0947420 MtrunA17_Chr1g0205961 57.447 47 20 0 29 75 115 161 5.81e-14 69.7
Msa0947420 MtrunA17_Chr5g0438841 52.459 61 29 0 25 85 12 72 7.73e-14 67.0
Msa0947420 MtrunA17_Chr5g0396741 69.841 63 19 0 25 87 113 175 9.09e-14 68.9
Msa0947420 MtrunA17_Chr2g0301181 49.123 57 29 0 29 85 19 75 1.15e-13 67.8
Msa0947420 MtrunA17_Chr5g0423811 72.500 40 11 0 29 68 88 127 1.40e-13 68.2
Msa0947420 MtrunA17_Chr3g0114761 43.810 105 51 3 12 110 10 112 3.21e-13 66.2
Msa0947420 MtrunA17_Chr5g0424051 59.375 64 25 1 23 85 90 153 6.15e-13 66.6
Msa0947420 MtrunA17_Chr3g0136541 43.939 66 37 0 31 96 42 107 6.52e-13 65.9
Msa0947420 MtrunA17_Chr7g0225131 47.761 67 28 2 27 93 27 86 7.10e-12 59.7
Msa0947420 MtrunA17_Chr1g0203831 56.923 65 27 1 29 93 57 120 1.63e-11 61.2
Msa0947420 MtrunA17_Chr5g0398081 50.000 62 25 1 29 84 49 110 6.35e-11 60.1
Msa0947420 MtrunA17_Chr5g0398091 50.000 62 25 1 29 84 54 115 7.03e-11 60.1
Msa0947420 MtrunA17_Chr5g0398061 33.562 146 75 5 29 158 49 188 7.20e-11 59.7
Msa0947420 MtrunA17_Chr6g0473791 51.020 49 24 0 29 77 57 105 9.03e-11 58.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0947420 AT5G13330.1 49.020 153 66 4 10 157 21 166 1.12e-37 130
Msa0947420 AT5G61890.1 74.074 81 16 2 13 88 69 149 9.77e-37 129
Msa0947420 AT2G33710.1 67.089 79 24 1 21 97 62 140 2.49e-31 114
Msa0947420 AT2G33710.2 67.089 79 24 1 21 97 62 140 3.01e-31 114
Msa0947420 AT5G07310.1 65.657 99 27 2 7 98 66 164 1.82e-30 113
Msa0947420 AT2G47520.1 54.639 97 44 0 16 112 37 133 2.46e-30 110
Msa0947420 AT5G47220.1 62.069 87 32 1 11 96 99 185 7.93e-29 108
Msa0947420 AT3G16770.1 61.538 78 29 1 10 87 61 137 3.47e-28 107
Msa0947420 AT2G44840.1 64.935 77 26 1 24 99 87 163 4.89e-28 106
Msa0947420 AT4G17500.1 61.364 88 31 2 12 96 129 216 8.87e-28 106
Msa0947420 AT5G47230.1 69.333 75 20 2 12 85 141 213 1.96e-27 106
Msa0947420 AT1G03800.1 53.061 98 43 2 19 114 41 137 1.47e-26 102
Msa0947420 AT3G15210.1 50.450 111 51 2 19 127 13 121 5.04e-26 100
Msa0947420 AT5G50080.2 79.412 68 14 0 21 88 78 145 8.43e-26 100
Msa0947420 AT5G50080.1 79.412 68 14 0 21 88 69 136 8.99e-26 100
Msa0947420 AT2G22200.1 57.647 85 31 1 4 88 51 130 1.07e-25 100
Msa0947420 AT5G51190.1 64.789 71 23 2 16 85 60 129 2.41e-25 99.0
Msa0947420 AT1G71450.1 58.904 73 30 0 20 92 15 87 2.64e-25 97.8
Msa0947420 AT5G44210.1 70.492 61 18 0 25 85 29 89 6.98e-25 97.4
Msa0947420 AT4G17490.1 71.429 63 17 1 24 85 132 194 8.94e-25 99.0
Msa0947420 AT1G72360.2 61.333 75 28 1 12 85 58 132 1.10e-24 98.2
Msa0947420 AT5G64750.1 49.091 110 44 2 36 137 192 297 1.54e-24 100
Msa0947420 AT1G72360.1 73.684 57 15 0 29 85 25 81 1.54e-24 96.7
Msa0947420 AT1G43160.1 82.540 63 11 0 24 86 56 118 2.27e-24 95.9
Msa0947420 AT1G72360.3 73.684 57 15 0 29 85 74 130 3.01e-24 97.1
Msa0947420 AT2G35700.1 61.765 68 26 0 25 92 41 108 5.21e-24 94.7
Msa0947420 AT1G28370.2 65.672 67 21 1 19 85 50 114 5.54e-24 95.1
Msa0947420 AT4G11140.1 67.797 59 19 0 27 85 85 143 7.96e-24 96.7
Msa0947420 AT1G28370.1 65.672 67 21 1 19 85 12 76 8.21e-24 93.6
Msa0947420 AT2G20880.1 53.488 86 39 1 27 112 185 269 8.23e-24 97.4
Msa0947420 AT5G65130.1 47.619 105 53 1 27 131 109 211 8.43e-24 96.3
Msa0947420 AT4G16750.1 50.562 89 44 0 4 92 15 103 9.97e-24 93.6
Msa0947420 AT5G65130.2 47.619 105 53 1 27 131 111 213 1.01e-23 96.3
Msa0947420 AT3G23230.1 58.442 77 31 1 10 85 1 77 1.85e-23 92.0
Msa0947420 AT3G57600.1 68.254 63 20 0 28 90 27 89 1.86e-23 95.5
Msa0947420 AT5G61600.1 68.333 60 18 1 27 85 86 145 2.20e-23 94.4
Msa0947420 AT4G27950.1 61.765 68 25 1 17 84 107 173 3.07e-23 95.9
Msa0947420 AT2G44940.1 59.155 71 29 0 22 92 93 163 3.11e-23 95.1
Msa0947420 AT5G07580.1 70.000 60 17 1 27 85 108 167 4.54e-23 92.8
Msa0947420 AT5G53290.1 58.904 73 29 1 12 84 109 180 4.99e-23 95.5
Msa0947420 AT5G11590.1 52.439 82 37 1 13 92 33 114 5.49e-23 93.2
Msa0947420 AT4G39780.1 66.129 62 21 0 26 87 90 151 5.92e-23 94.0
Msa0947420 AT1G22190.1 52.874 87 36 1 4 90 63 144 6.66e-23 93.6
Msa0947420 AT1G36060.1 55.556 81 34 1 7 87 123 201 6.77e-23 94.7
Msa0947420 AT4G28140.1 54.217 83 34 1 8 90 126 204 6.77e-23 94.4
Msa0947420 AT4G32800.1 58.571 70 29 0 23 92 13 82 8.69e-23 92.4
Msa0947420 AT1G28360.1 64.615 65 23 0 25 89 8 72 1.47e-22 90.9
Msa0947420 AT3G11020.1 66.129 62 21 0 29 90 78 139 1.70e-22 93.6
Msa0947420 AT3G16280.2 62.500 64 24 0 29 92 79 142 2.03e-22 92.0
Msa0947420 AT1G78080.1 59.211 76 24 1 15 90 145 213 2.06e-22 93.6
Msa0947420 AT3G16280.1 62.500 64 24 0 29 92 61 124 2.14e-22 91.7
Msa0947420 AT2G25820.1 62.500 64 24 0 29 92 26 89 4.50e-22 90.5
Msa0947420 AT3G20310.1 50.505 99 48 1 19 116 17 115 4.77e-22 90.9
Msa0947420 AT4G13620.1 66.154 65 22 0 27 91 230 294 5.81e-22 92.8
Msa0947420 AT1G50640.1 65.625 64 22 0 22 85 21 84 6.36e-22 90.1
Msa0947420 AT3G60490.1 62.500 64 24 0 29 92 71 134 7.39e-22 90.9
Msa0947420 AT3G61630.1 70.000 60 18 0 25 84 101 160 7.62e-22 91.7
Msa0947420 AT4G18450.1 53.409 88 37 3 25 108 106 193 8.69e-22 91.3
Msa0947420 AT1G75490.1 50.000 80 40 0 29 108 42 121 1.09e-21 89.0
Msa0947420 AT5G43410.1 69.492 59 17 1 29 86 15 73 1.21e-21 87.0
Msa0947420 AT2G46310.1 69.643 56 17 0 29 84 99 154 1.61e-21 90.5
Msa0947420 AT2G31230.1 51.163 86 41 1 22 106 79 164 1.83e-21 89.4
Msa0947420 AT3G23240.1 66.667 60 19 1 26 84 79 138 2.32e-21 88.6
Msa0947420 AT5G25390.2 48.936 94 35 1 27 120 5 85 3.24e-21 87.4
Msa0947420 AT4G23750.2 54.217 83 30 2 2 84 103 177 3.73e-21 90.1
Msa0947420 AT4G23750.1 54.217 83 30 2 2 84 103 177 3.73e-21 90.1
Msa0947420 AT1G01250.1 59.375 64 26 0 29 92 45 108 4.50e-21 87.0
Msa0947420 AT1G15360.1 66.102 59 20 0 27 85 5 63 5.19e-21 87.0
Msa0947420 AT1G15360.2 66.102 59 20 0 27 85 5 63 5.19e-21 87.0
Msa0947420 AT2G23340.1 48.684 76 39 0 27 102 26 101 1.74e-20 85.1
Msa0947420 AT2G40340.2 62.712 59 22 0 29 87 14 72 2.19e-20 87.4
Msa0947420 AT2G40340.5 62.712 59 22 0 29 87 14 72 2.19e-20 87.4
Msa0947420 AT2G40340.4 62.712 59 22 0 29 87 14 72 2.19e-20 87.4
Msa0947420 AT5G05410.2 51.765 85 26 1 29 113 79 148 2.55e-20 87.4
Msa0947420 AT4G34410.1 78.947 57 12 0 29 85 136 192 3.14e-20 86.7
Msa0947420 AT5G05410.1 51.765 85 26 1 29 113 79 148 3.56e-20 87.4
Msa0947420 AT4G06746.1 50.000 74 35 1 13 86 22 93 3.86e-20 83.6
Msa0947420 AT4G36900.1 53.030 66 31 0 24 89 25 90 4.01e-20 84.7
Msa0947420 AT5G25810.1 59.375 64 26 0 29 92 36 99 4.27e-20 85.1
Msa0947420 AT1G46768.3 44.318 88 49 0 1 88 3 90 4.81e-20 83.2
Msa0947420 AT2G40340.3 62.712 59 22 0 29 87 72 130 5.53e-20 86.3
Msa0947420 AT5G18450.1 48.276 87 32 1 11 84 3 89 5.84e-20 86.7
Msa0947420 AT1G46768.1 44.318 88 49 0 1 88 3 90 6.01e-20 83.2
Msa0947420 AT1G46768.2 44.318 88 49 0 1 88 3 90 6.01e-20 83.2
Msa0947420 AT2G40340.6 62.712 59 22 0 29 87 79 137 6.25e-20 87.0
Msa0947420 AT2G40340.1 62.712 59 22 0 29 87 72 130 6.26e-20 87.0
Msa0947420 AT1G12980.1 47.170 106 46 3 28 131 56 153 9.13e-20 86.3
Msa0947420 AT2G36450.1 61.538 65 24 1 29 92 15 79 1.60e-19 82.8
Msa0947420 AT1G53910.1 71.429 63 18 0 24 86 120 182 2.48e-19 85.5
Msa0947420 AT1G53910.2 71.429 63 18 0 24 86 120 182 2.48e-19 85.5
Msa0947420 AT1G53910.3 71.429 63 18 0 24 86 118 180 2.54e-19 85.5
Msa0947420 AT5G13910.1 51.389 72 33 1 21 92 12 81 2.81e-19 82.8
Msa0947420 AT5G25390.1 47.872 94 33 2 27 120 5 82 2.83e-19 82.4
Msa0947420 AT5G25190.1 60.000 60 24 0 26 85 5 64 3.26e-19 82.0
Msa0947420 AT1G21910.1 37.063 143 79 3 29 161 50 191 3.90e-19 82.8
Msa0947420 AT5G67190.1 56.667 60 26 0 29 88 21 80 4.16e-19 81.6
Msa0947420 AT2G40350.2 59.322 59 24 0 29 87 74 132 6.77e-19 80.9
Msa0947420 AT2G40350.1 59.322 59 24 0 29 87 67 125 8.05e-19 80.5
Msa0947420 AT3G14230.3 71.429 63 18 0 24 86 118 180 8.69e-19 84.0
Msa0947420 AT3G14230.2 71.429 63 18 0 24 86 119 181 8.75e-19 84.0
Msa0947420 AT3G14230.1 71.429 63 18 0 24 86 123 185 9.54e-19 84.0
Msa0947420 AT1G24590.1 40.157 127 65 1 29 144 58 184 9.95e-19 83.2
Msa0947420 AT1G22985.1 66.129 62 18 2 26 84 72 133 1.33e-18 79.7
Msa0947420 AT3G50260.1 50.769 65 32 0 24 88 16 80 1.50e-18 79.3
Msa0947420 AT1G77200.1 49.485 97 44 1 1 92 10 106 1.56e-18 81.6
Msa0947420 AT5G61590.1 68.254 63 19 1 24 85 102 164 1.72e-18 80.5
Msa0947420 AT4G31060.1 53.968 63 29 0 23 85 21 83 1.84e-18 80.1
Msa0947420 AT5G19790.1 54.430 79 30 3 10 84 1 77 2.98e-18 80.9
Msa0947420 AT5G18560.1 60.714 56 22 0 29 84 55 110 4.70e-18 81.6
Msa0947420 AT1G53170.1 54.651 86 34 1 12 92 9 94 5.34e-18 79.0
Msa0947420 AT1G06160.1 54.167 96 43 1 12 106 65 160 1.12e-17 79.3
Msa0947420 AT4G25490.1 62.500 56 21 0 29 84 48 103 1.97e-17 77.8
Msa0947420 AT4G25470.1 60.714 56 22 0 29 84 51 106 3.41e-17 77.4
Msa0947420 AT5G51990.1 46.512 86 45 1 29 113 54 139 3.47e-17 77.4
Msa0947420 AT4G25480.1 60.714 56 22 0 29 84 51 106 4.90e-17 77.0
Msa0947420 AT1G28160.1 56.250 64 26 1 29 92 39 100 6.75e-17 77.0
Msa0947420 AT3G23220.1 59.459 74 26 2 23 92 8 81 1.94e-16 73.6
Msa0947420 AT1G22810.1 41.573 89 50 1 23 109 8 96 2.40e-16 73.6
Msa0947420 AT1G33760.1 49.398 83 42 0 10 92 1 83 2.72e-16 74.3
Msa0947420 AT1G71130.1 58.462 65 20 2 26 84 76 139 3.67e-16 73.6
Msa0947420 AT1G12890.1 45.652 92 49 1 29 120 21 111 4.66e-16 74.3
Msa0947420 AT1G19210.1 51.667 60 29 0 26 85 9 68 4.85e-16 73.6
Msa0947420 AT1G04370.1 69.492 59 17 1 29 86 20 78 8.27e-16 71.6
Msa0947420 AT5G67000.1 53.333 60 28 0 24 83 116 175 1.12e-15 72.8
Msa0947420 AT5G21960.1 40.625 96 56 1 29 123 7 102 1.21e-15 73.2
Msa0947420 AT1G68550.1 61.818 55 21 0 26 80 110 164 1.66e-15 74.3
Msa0947420 AT1G68550.2 61.818 55 21 0 26 80 110 164 1.66e-15 74.3
Msa0947420 AT5G11190.1 66.102 59 20 0 27 85 5 63 7.66e-15 70.5
Msa0947420 AT1G74930.1 50.877 57 28 0 29 85 21 77 7.79e-15 70.5
Msa0947420 AT1G63030.2 36.134 119 68 2 29 139 30 148 8.89e-15 70.1
Msa0947420 AT1G63030.1 36.134 119 68 2 29 139 30 148 8.89e-15 70.1
Msa0947420 AT1G64380.1 66.154 65 22 0 23 87 130 194 2.22e-14 71.2
Msa0947420 AT1G71520.1 36.264 91 54 1 20 106 5 95 3.05e-14 67.8
Msa0947420 AT2G40220.1 64.407 59 21 0 26 84 52 110 5.87e-14 70.1
Msa0947420 AT1G77640.1 45.631 103 45 2 25 117 39 140 7.67e-14 68.9
Msa0947420 AT1G12610.1 34.400 125 59 4 29 149 30 135 1.63e-13 67.4
Msa0947420 AT3G25890.1 64.444 45 16 0 31 75 133 177 9.32e-13 66.6
Msa0947420 AT3G25890.2 64.444 45 16 0 31 75 133 177 9.32e-13 66.6
Msa0947420 AT2G38340.1 47.778 90 32 3 29 110 70 152 2.31e-12 64.7
Msa0947420 AT1G12630.1 52.174 69 32 1 25 93 15 82 6.16e-12 62.8
Msa0947420 AT1G44830.1 52.941 68 31 1 25 91 31 98 6.80e-12 62.8
Msa0947420 AT1G80580.1 60.656 61 24 0 24 84 111 171 6.92e-11 60.8
Msa0947420 AT1G49120.1 57.447 47 20 0 29 75 87 133 7.88e-11 60.8

Find 44 sgRNAs with CRISPR-Local

Find 174 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TTCACCATCACCTTTGTTTA+TGG 0.140277 6_3:+30140554 Msa0947420:CDS
AATACTTTACCTTGATTTGT+AGG 0.273640 6_3:-30140597 None:intergenic
TTTGACGATCTTAAAGAATT+CGG 0.282453 6_3:-30141941 None:intergenic
TTCTTATTACGCGGCGGTGT+TGG 0.319836 6_3:-30141548 None:intergenic
GCACTTGTGCATATTGCATT+AGG 0.321585 6_3:-30141664 None:intergenic
ACTCATTTCTAATTTGCCTT+TGG 0.349100 6_3:+30141523 Msa0947420:CDS
TGTGCATATTGCATTAGGTT+TGG 0.349313 6_3:-30141659 None:intergenic
TTGACGATCTTAAAGAATTC+GGG 0.354348 6_3:-30141940 None:intergenic
GTGCATATTGCATTAGGTTT+GGG 0.357727 6_3:-30141658 None:intergenic
GTCGCCGTCTTCTACTTCTA+AGG 0.390460 6_3:+30141844 Msa0947420:CDS
CCTTGATTTGTAGGTTGAGA+TGG 0.418944 6_3:-30140588 None:intergenic
AGGTGTAAGGCAAAGACCTT+GGG 0.423704 6_3:+30141355 Msa0947420:CDS
CTAAGGATGTTGTTGTGCCT+AGG 0.424377 6_3:+30141861 Msa0947420:CDS
TGCACAAGTGCTTTGTAGTA+AGG 0.439589 6_3:+30141676 Msa0947420:CDS
GCAAATTAGAAATGAGTTGA+GGG 0.449578 6_3:-30141517 None:intergenic
TAAGGATGTTGTTGTGCCTA+GGG 0.453959 6_3:+30141862 Msa0947420:CDS
ATCTCGATCTATCAAGAGAT+TGG 0.456635 6_3:+30141979 Msa0947420:three_prime_UTR
CCTCTCATGTTCCTATCAAA+AGG 0.486966 6_3:-30141899 None:intergenic
TGCAGCTTCAGCTGTTTCAA+AGG 0.496634 6_3:-30141435 None:intergenic
CCATCTCAACCTACAAATCA+AGG 0.507056 6_3:+30140588 Msa0947420:CDS
GAAGACGGCGACATTGTTGA+TGG 0.513719 6_3:-30141833 None:intergenic
CGCGGCGGTGTTGGATCCAA+AGG 0.521312 6_3:-30141539 None:intergenic
GAGGTGTAAGGCAAAGACCT+TGG 0.521541 6_3:+30141354 Msa0947420:CDS
GGCAAATTAGAAATGAGTTG+AGG 0.534499 6_3:-30141518 None:intergenic
ATCTTAAAGAATTCGGGTCA+CGG 0.539650 6_3:-30141934 None:intergenic
ATTATTATTGTAAAGACTTG+AGG 0.544186 6_3:-30141723 None:intergenic
GAAGCTGCATTGAGATTCAA+AGG 0.544747 6_3:+30141473 Msa0947420:CDS
TCGTCAAATACTATAGTCCA+TGG 0.545174 6_3:+30141956 Msa0947420:three_prime_UTR
TTCTCCATAAACAAAGGTGA+TGG 0.561770 6_3:-30140558 None:intergenic
GATGTTGTTGTGCCTAGGGT+TGG 0.565223 6_3:+30141866 Msa0947420:CDS
TCTTGTTTCTCCATAAACAA+AGG 0.565335 6_3:-30140564 None:intergenic
AGCAAGCTGCGAAGAAGAAG+AGG 0.579103 6_3:-30141588 None:intergenic
CGATCTATCAAGAGATTGGA+CGG 0.584756 6_3:+30141983 Msa0947420:three_prime_UTR
AAAGGAGCAAGAGTGTGGCT+TGG 0.588867 6_3:+30141410 Msa0947420:CDS
TCTTGATAGATCGAGATCCA+TGG 0.589352 6_3:-30141973 None:intergenic
GGAGGACAATCTCCAACCCT+AGG 0.601769 6_3:-30141878 None:intergenic
ATTATTGTAAAGACTTGAGG+CGG 0.626180 6_3:-30141720 None:intergenic
CTCATGTTCCTATCAAAAGG+AGG 0.644030 6_3:-30141896 None:intergenic
TCTTCTGATGATGACGACGA+AGG 0.647082 6_3:-30141629 None:intergenic
GGTGTAAGGCAAAGACCTTG+GGG 0.683950 6_3:+30141356 Msa0947420:CDS
ACATCCTTAGAAGTAGAAGA+CGG 0.690719 6_3:-30141848 None:intergenic
GCATTATTCTTATTACGCGG+CGG 0.709585 6_3:-30141554 None:intergenic
GAAGCATTATTCTTATTACG+CGG 0.717034 6_3:-30141557 None:intergenic
GTGTAAGGCAAAGACCTTGG+GGG 0.751126 6_3:+30141357 Msa0947420:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTTAAGAATGTATTATAATA+TGG + chr6_3:30140738-30140757 Msa0947420:intron 10.0%
!!! TTCAAATCATTTTAAATAAT+TGG - chr6_3:30141306-30141325 None:intergenic 10.0%
!!! TATTTAAAATGATTTGAATT+AGG + chr6_3:30141308-30141327 Msa0947420:intron 10.0%
!! TTTAAGAATGTATTATAATA+TGG + chr6_3:30140738-30140757 Msa0947420:intron 10.0%
!!! TTCAAATCATTTTAAATAAT+TGG - chr6_3:30141306-30141325 None:intergenic 10.0%
!!! TATTTAAAATGATTTGAATT+AGG + chr6_3:30141308-30141327 Msa0947420:intron 10.0%
!!! GAAAAAATAGAGACTTTTTT+TGG - chr6_3:30140962-30140981 None:intergenic 20.0%
!!! CAAATTTGAGCTTTTTATAA+TGG - chr6_3:30140986-30141005 None:intergenic 20.0%
!! AGATATGTATGAACTAATAA+TGG - chr6_3:30141185-30141204 None:intergenic 20.0%
!! GAAAAGAAAAAACATTATAG+AGG + chr6_3:30141335-30141354 Msa0947420:CDS 20.0%
!! ATTATTATTGTAAAGACTTG+AGG - chr6_3:30141726-30141745 None:intergenic 20.0%
!!! GAAAAAATAGAGACTTTTTT+TGG - chr6_3:30140962-30140981 None:intergenic 20.0%
!!! CAAATTTGAGCTTTTTATAA+TGG - chr6_3:30140986-30141005 None:intergenic 20.0%
!! AGATATGTATGAACTAATAA+TGG - chr6_3:30141185-30141204 None:intergenic 20.0%
!! GAAAAGAAAAAACATTATAG+AGG + chr6_3:30141335-30141354 Msa0947420:CDS 20.0%
!! ATTATTATTGTAAAGACTTG+AGG - chr6_3:30141726-30141745 None:intergenic 20.0%
!!! AATACTTTACCTTGATTTGT+AGG - chr6_3:30140600-30140619 None:intergenic 25.0%
!! CTTCAATTTCTTCATTGATT+TGG + chr6_3:30140638-30140657 Msa0947420:intron 25.0%
! CATTTCAAGATAATAGAGAA+AGG - chr6_3:30140684-30140703 None:intergenic 25.0%
! TATGGTCTATTTACATAACT+AGG + chr6_3:30140756-30140775 Msa0947420:intron 25.0%
!! GATAAAATATCAGGATTAGT+TGG - chr6_3:30140853-30140872 None:intergenic 25.0%
! TATGTCAATCCTAATTCTAA+TGG + chr6_3:30141147-30141166 Msa0947420:intron 25.0%
! GAAATTATGCCATTAGAATT+AGG - chr6_3:30141159-30141178 None:intergenic 25.0%
!! AAAAACATTATAGAGGTGTA+AGG + chr6_3:30141342-30141361 Msa0947420:CDS 25.0%
! GAAATAAGAGATCCTAAAAA+AGG + chr6_3:30141392-30141411 Msa0947420:CDS 25.0%
! TTTGACGATCTTAAAGAATT+CGG - chr6_3:30141944-30141963 None:intergenic 25.0%
!!! AATACTTTACCTTGATTTGT+AGG - chr6_3:30140600-30140619 None:intergenic 25.0%
!! CTTCAATTTCTTCATTGATT+TGG + chr6_3:30140638-30140657 Msa0947420:intron 25.0%
! CATTTCAAGATAATAGAGAA+AGG - chr6_3:30140684-30140703 None:intergenic 25.0%
! TATGGTCTATTTACATAACT+AGG + chr6_3:30140756-30140775 Msa0947420:intron 25.0%
!! GATAAAATATCAGGATTAGT+TGG - chr6_3:30140853-30140872 None:intergenic 25.0%
! TATGTCAATCCTAATTCTAA+TGG + chr6_3:30141147-30141166 Msa0947420:intron 25.0%
! GAAATTATGCCATTAGAATT+AGG - chr6_3:30141159-30141178 None:intergenic 25.0%
!! AAAAACATTATAGAGGTGTA+AGG + chr6_3:30141342-30141361 Msa0947420:CDS 25.0%
! GAAATAAGAGATCCTAAAAA+AGG + chr6_3:30141392-30141411 Msa0947420:CDS 25.0%
! TTTGACGATCTTAAAGAATT+CGG - chr6_3:30141944-30141963 None:intergenic 25.0%
! TCTTGTTTCTCCATAAACAA+AGG - chr6_3:30140567-30140586 None:intergenic 30.0%
ATTAGTTGGACTTAGGTTAT+TGG - chr6_3:30140839-30140858 None:intergenic 30.0%
AGAGTGAGAGATAAAATATC+AGG - chr6_3:30140862-30140881 None:intergenic 30.0%
CTATCTACATATTACTCCTT+TGG + chr6_3:30140910-30140929 Msa0947420:intron 30.0%
! TCGGACAAACTTCAAATTTT+AGG + chr6_3:30141225-30141244 Msa0947420:intron 30.0%
! CGGACAAACTTCAAATTTTA+GGG + chr6_3:30141226-30141245 Msa0947420:intron 30.0%
! GGACAAACTTCAAATTTTAG+GGG + chr6_3:30141227-30141246 Msa0947420:intron 30.0%
! TTGTTGATGCTCCAATTTTT+AGG - chr6_3:30141261-30141280 None:intergenic 30.0%
! GCAAATTAGAAATGAGTTGA+GGG - chr6_3:30141520-30141539 None:intergenic 30.0%
! ACTCATTTCTAATTTGCCTT+TGG + chr6_3:30141523-30141542 Msa0947420:CDS 30.0%
! GAAGCATTATTCTTATTACG+CGG - chr6_3:30141560-30141579 None:intergenic 30.0%
ATTATTGTAAAGACTTGAGG+CGG - chr6_3:30141723-30141742 None:intergenic 30.0%
TTGACGATCTTAAAGAATTC+GGG - chr6_3:30141943-30141962 None:intergenic 30.0%
! TCTTGTTTCTCCATAAACAA+AGG - chr6_3:30140567-30140586 None:intergenic 30.0%
ATTAGTTGGACTTAGGTTAT+TGG - chr6_3:30140839-30140858 None:intergenic 30.0%
AGAGTGAGAGATAAAATATC+AGG - chr6_3:30140862-30140881 None:intergenic 30.0%
CTATCTACATATTACTCCTT+TGG + chr6_3:30140910-30140929 Msa0947420:intron 30.0%
! TCGGACAAACTTCAAATTTT+AGG + chr6_3:30141225-30141244 Msa0947420:intron 30.0%
! CGGACAAACTTCAAATTTTA+GGG + chr6_3:30141226-30141245 Msa0947420:intron 30.0%
! GGACAAACTTCAAATTTTAG+GGG + chr6_3:30141227-30141246 Msa0947420:intron 30.0%
! TTGTTGATGCTCCAATTTTT+AGG - chr6_3:30141261-30141280 None:intergenic 30.0%
! GCAAATTAGAAATGAGTTGA+GGG - chr6_3:30141520-30141539 None:intergenic 30.0%
! ACTCATTTCTAATTTGCCTT+TGG + chr6_3:30141523-30141542 Msa0947420:CDS 30.0%
! GAAGCATTATTCTTATTACG+CGG - chr6_3:30141560-30141579 None:intergenic 30.0%
ATTATTGTAAAGACTTGAGG+CGG - chr6_3:30141723-30141742 None:intergenic 30.0%
TTGACGATCTTAAAGAATTC+GGG - chr6_3:30141943-30141962 None:intergenic 30.0%
! TTCACCATCACCTTTGTTTA+TGG + chr6_3:30140554-30140573 Msa0947420:CDS 35.0%
TTCTCCATAAACAAAGGTGA+TGG - chr6_3:30140561-30140580 None:intergenic 35.0%
!! TATCAGGATTAGTTGGACTT+AGG - chr6_3:30140846-30140865 None:intergenic 35.0%
!! AGTTTGATTTGTGACACCAA+AGG - chr6_3:30140929-30140948 None:intergenic 35.0%
GGCAAATTAGAAATGAGTTG+AGG - chr6_3:30141521-30141540 None:intergenic 35.0%
GTGCATATTGCATTAGGTTT+GGG - chr6_3:30141661-30141680 None:intergenic 35.0%
TGTGCATATTGCATTAGGTT+TGG - chr6_3:30141662-30141681 None:intergenic 35.0%
!! GTTGATGGTGTTGAGAAAAA+TGG - chr6_3:30141821-30141840 None:intergenic 35.0%
ACATCCTTAGAAGTAGAAGA+CGG - chr6_3:30141851-30141870 None:intergenic 35.0%
! CTTTTGATAGGAACATGAGA+GGG + chr6_3:30141900-30141919 Msa0947420:CDS 35.0%
ATCTTAAAGAATTCGGGTCA+CGG - chr6_3:30141937-30141956 None:intergenic 35.0%
TCGTCAAATACTATAGTCCA+TGG + chr6_3:30141956-30141975 Msa0947420:three_prime_UTR 35.0%
ATCTCGATCTATCAAGAGAT+TGG + chr6_3:30141979-30141998 Msa0947420:three_prime_UTR 35.0%
! TTCACCATCACCTTTGTTTA+TGG + chr6_3:30140554-30140573 Msa0947420:CDS 35.0%
TTCTCCATAAACAAAGGTGA+TGG - chr6_3:30140561-30140580 None:intergenic 35.0%
!! TATCAGGATTAGTTGGACTT+AGG - chr6_3:30140846-30140865 None:intergenic 35.0%
!! AGTTTGATTTGTGACACCAA+AGG - chr6_3:30140929-30140948 None:intergenic 35.0%
GGCAAATTAGAAATGAGTTG+AGG - chr6_3:30141521-30141540 None:intergenic 35.0%
GTGCATATTGCATTAGGTTT+GGG - chr6_3:30141661-30141680 None:intergenic 35.0%
TGTGCATATTGCATTAGGTT+TGG - chr6_3:30141662-30141681 None:intergenic 35.0%
!! GTTGATGGTGTTGAGAAAAA+TGG - chr6_3:30141821-30141840 None:intergenic 35.0%
ACATCCTTAGAAGTAGAAGA+CGG - chr6_3:30141851-30141870 None:intergenic 35.0%
! CTTTTGATAGGAACATGAGA+GGG + chr6_3:30141900-30141919 Msa0947420:CDS 35.0%
ATCTTAAAGAATTCGGGTCA+CGG - chr6_3:30141937-30141956 None:intergenic 35.0%
TCGTCAAATACTATAGTCCA+TGG + chr6_3:30141956-30141975 Msa0947420:three_prime_UTR 35.0%
ATCTCGATCTATCAAGAGAT+TGG + chr6_3:30141979-30141998 Msa0947420:three_prime_UTR 35.0%
!! CCTTGATTTGTAGGTTGAGA+TGG - chr6_3:30140591-30140610 None:intergenic 40.0%
CCATCTCAACCTACAAATCA+AGG + chr6_3:30140588-30140607 Msa0947420:CDS 40.0%
GTGTCACAAATCAAACTGCT+GGG + chr6_3:30140932-30140951 Msa0947420:intron 40.0%
GGGCTACTTCTCCTAAAAAT+TGG + chr6_3:30141247-30141266 Msa0947420:intron 40.0%
!!! CACACTCTTGCTCCTTTTTT+AGG - chr6_3:30141407-30141426 None:intergenic 40.0%
CTAAAAAAGGAGCAAGAGTG+TGG + chr6_3:30141405-30141424 Msa0947420:CDS 40.0%
GAAGCTGCATTGAGATTCAA+AGG + chr6_3:30141473-30141492 Msa0947420:CDS 40.0%
GCATTATTCTTATTACGCGG+CGG - chr6_3:30141557-30141576 None:intergenic 40.0%
GCACTTGTGCATATTGCATT+AGG - chr6_3:30141667-30141686 None:intergenic 40.0%
TGCACAAGTGCTTTGTAGTA+AGG + chr6_3:30141676-30141695 Msa0947420:CDS 40.0%
! GATGGTGTTGAGAAAAATGG+CGG - chr6_3:30141818-30141837 None:intergenic 40.0%
TAAGGATGTTGTTGTGCCTA+GGG + chr6_3:30141862-30141881 Msa0947420:CDS 40.0%
! GAGATTGTCCTCCTTTTGAT+AGG + chr6_3:30141888-30141907 Msa0947420:CDS 40.0%
CTCATGTTCCTATCAAAAGG+AGG - chr6_3:30141899-30141918 None:intergenic 40.0%
CCTCTCATGTTCCTATCAAA+AGG - chr6_3:30141902-30141921 None:intergenic 40.0%
! CCTTTTGATAGGAACATGAG+AGG + chr6_3:30141899-30141918 Msa0947420:CDS 40.0%
TCTTGATAGATCGAGATCCA+TGG - chr6_3:30141976-30141995 None:intergenic 40.0%
CGATCTATCAAGAGATTGGA+CGG + chr6_3:30141983-30142002 Msa0947420:three_prime_UTR 40.0%
!! CCTTGATTTGTAGGTTGAGA+TGG - chr6_3:30140591-30140610 None:intergenic 40.0%
CCATCTCAACCTACAAATCA+AGG + chr6_3:30140588-30140607 Msa0947420:CDS 40.0%
GTGTCACAAATCAAACTGCT+GGG + chr6_3:30140932-30140951 Msa0947420:intron 40.0%
GGGCTACTTCTCCTAAAAAT+TGG + chr6_3:30141247-30141266 Msa0947420:intron 40.0%
!!! CACACTCTTGCTCCTTTTTT+AGG - chr6_3:30141407-30141426 None:intergenic 40.0%
CTAAAAAAGGAGCAAGAGTG+TGG + chr6_3:30141405-30141424 Msa0947420:CDS 40.0%
GAAGCTGCATTGAGATTCAA+AGG + chr6_3:30141473-30141492 Msa0947420:CDS 40.0%
GCATTATTCTTATTACGCGG+CGG - chr6_3:30141557-30141576 None:intergenic 40.0%
GCACTTGTGCATATTGCATT+AGG - chr6_3:30141667-30141686 None:intergenic 40.0%
TGCACAAGTGCTTTGTAGTA+AGG + chr6_3:30141676-30141695 Msa0947420:CDS 40.0%
! GATGGTGTTGAGAAAAATGG+CGG - chr6_3:30141818-30141837 None:intergenic 40.0%
TAAGGATGTTGTTGTGCCTA+GGG + chr6_3:30141862-30141881 Msa0947420:CDS 40.0%
! GAGATTGTCCTCCTTTTGAT+AGG + chr6_3:30141888-30141907 Msa0947420:CDS 40.0%
CTCATGTTCCTATCAAAAGG+AGG - chr6_3:30141899-30141918 None:intergenic 40.0%
CCTCTCATGTTCCTATCAAA+AGG - chr6_3:30141902-30141921 None:intergenic 40.0%
! CCTTTTGATAGGAACATGAG+AGG + chr6_3:30141899-30141918 Msa0947420:CDS 40.0%
TCTTGATAGATCGAGATCCA+TGG - chr6_3:30141976-30141995 None:intergenic 40.0%
CGATCTATCAAGAGATTGGA+CGG + chr6_3:30141983-30142002 Msa0947420:three_prime_UTR 40.0%
ACTAGGAGCTGTCTTGATCA+AGG + chr6_3:30140773-30140792 Msa0947420:intron 45.0%
GAGCTGTCTTGATCAAGGTT+TGG + chr6_3:30140778-30140797 Msa0947420:intron 45.0%
! GGTGTCACAAATCAAACTGC+TGG + chr6_3:30140931-30140950 Msa0947420:intron 45.0%
AGGTGTAAGGCAAAGACCTT+GGG + chr6_3:30141355-30141374 Msa0947420:CDS 45.0%
! TGCAGCTTCAGCTGTTTCAA+AGG - chr6_3:30141438-30141457 None:intergenic 45.0%
GACGAAGGAAAAAGAGGCTT+CGG - chr6_3:30141617-30141636 None:intergenic 45.0%
GATGACGACGAAGGAAAAAG+AGG - chr6_3:30141623-30141642 None:intergenic 45.0%
! TCTTCTGATGATGACGACGA+AGG - chr6_3:30141632-30141651 None:intergenic 45.0%
CTAAGGATGTTGTTGTGCCT+AGG + chr6_3:30141861-30141880 Msa0947420:CDS 45.0%
ACTAGGAGCTGTCTTGATCA+AGG + chr6_3:30140773-30140792 Msa0947420:intron 45.0%
GAGCTGTCTTGATCAAGGTT+TGG + chr6_3:30140778-30140797 Msa0947420:intron 45.0%
! GGTGTCACAAATCAAACTGC+TGG + chr6_3:30140931-30140950 Msa0947420:intron 45.0%
AGGTGTAAGGCAAAGACCTT+GGG + chr6_3:30141355-30141374 Msa0947420:CDS 45.0%
! TGCAGCTTCAGCTGTTTCAA+AGG - chr6_3:30141438-30141457 None:intergenic 45.0%
GACGAAGGAAAAAGAGGCTT+CGG - chr6_3:30141617-30141636 None:intergenic 45.0%
GATGACGACGAAGGAAAAAG+AGG - chr6_3:30141623-30141642 None:intergenic 45.0%
! TCTTCTGATGATGACGACGA+AGG - chr6_3:30141632-30141651 None:intergenic 45.0%
CTAAGGATGTTGTTGTGCCT+AGG + chr6_3:30141861-30141880 Msa0947420:CDS 45.0%
!!! TTTAAATTTTATTTATCTTT+CGG + chr6_3:30141206-30141225 Msa0947420:intron 5.0%
!!! TTTAAATTTTATTTATCTTT+CGG + chr6_3:30141206-30141225 Msa0947420:intron 5.0%
GAGGTGTAAGGCAAAGACCT+TGG + chr6_3:30141354-30141373 Msa0947420:CDS 50.0%
GGTGTAAGGCAAAGACCTTG+GGG + chr6_3:30141356-30141375 Msa0947420:CDS 50.0%
GTGTAAGGCAAAGACCTTGG+GGG + chr6_3:30141357-30141376 Msa0947420:CDS 50.0%
GCAAAGACCTTGGGGGAAAT+GGG + chr6_3:30141364-30141383 Msa0947420:CDS 50.0%
! AAAGGAGCAAGAGTGTGGCT+TGG + chr6_3:30141410-30141429 Msa0947420:CDS 50.0%
TTCTTATTACGCGGCGGTGT+TGG - chr6_3:30141551-30141570 None:intergenic 50.0%
AGCAAGCTGCGAAGAAGAAG+AGG - chr6_3:30141591-30141610 None:intergenic 50.0%
GAAGGAAAAAGAGGCTTCGG+TGG - chr6_3:30141614-30141633 None:intergenic 50.0%
GAAGACGGCGACATTGTTGA+TGG - chr6_3:30141836-30141855 None:intergenic 50.0%
GTCGCCGTCTTCTACTTCTA+AGG + chr6_3:30141844-30141863 Msa0947420:CDS 50.0%
GATGTTGTTGTGCCTAGGGT+TGG + chr6_3:30141866-30141885 Msa0947420:CDS 50.0%
GAGGTGTAAGGCAAAGACCT+TGG + chr6_3:30141354-30141373 Msa0947420:CDS 50.0%
GGTGTAAGGCAAAGACCTTG+GGG + chr6_3:30141356-30141375 Msa0947420:CDS 50.0%
GTGTAAGGCAAAGACCTTGG+GGG + chr6_3:30141357-30141376 Msa0947420:CDS 50.0%
GCAAAGACCTTGGGGGAAAT+GGG + chr6_3:30141364-30141383 Msa0947420:CDS 50.0%
! AAAGGAGCAAGAGTGTGGCT+TGG + chr6_3:30141410-30141429 Msa0947420:CDS 50.0%
TTCTTATTACGCGGCGGTGT+TGG - chr6_3:30141551-30141570 None:intergenic 50.0%
AGCAAGCTGCGAAGAAGAAG+AGG - chr6_3:30141591-30141610 None:intergenic 50.0%
GAAGGAAAAAGAGGCTTCGG+TGG - chr6_3:30141614-30141633 None:intergenic 50.0%
GAAGACGGCGACATTGTTGA+TGG - chr6_3:30141836-30141855 None:intergenic 50.0%
GTCGCCGTCTTCTACTTCTA+AGG + chr6_3:30141844-30141863 Msa0947420:CDS 50.0%
GATGTTGTTGTGCCTAGGGT+TGG + chr6_3:30141866-30141885 Msa0947420:CDS 50.0%
GGCAAAGACCTTGGGGGAAA+TGG + chr6_3:30141363-30141382 Msa0947420:CDS 55.0%
GGAGGACAATCTCCAACCCT+AGG - chr6_3:30141881-30141900 None:intergenic 55.0%
GGCAAAGACCTTGGGGGAAA+TGG + chr6_3:30141363-30141382 Msa0947420:CDS 55.0%
GGAGGACAATCTCCAACCCT+AGG - chr6_3:30141881-30141900 None:intergenic 55.0%
TCAGCTGCCCATTTCCCCCA+AGG - chr6_3:30141374-30141393 None:intergenic 60.0%
TCAGCTGCCCATTTCCCCCA+AGG - chr6_3:30141374-30141393 None:intergenic 60.0%
! CGCGGCGGTGTTGGATCCAA+AGG - chr6_3:30141542-30141561 None:intergenic 65.0%
! CGCGGCGGTGTTGGATCCAA+AGG - chr6_3:30141542-30141561 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
chr6_3 gene 30140546 30142022 30140546 ID=Msa0947420;Name=Msa0947420
chr6_3 mRNA 30140546 30142022 30140546 ID=Msa0947420-mRNA-1;Parent=Msa0947420;Name=Msa0947420-mRNA-1;_AED=0.02;_eAED=0.02;_QI=0|1|1|1|1|1|2|94|220
chr6_3 exon 30140546 30140609 30140546 ID=Msa0947420-mRNA-1:exon:7982;Parent=Msa0947420-mRNA-1
chr6_3 exon 30141330 30142022 30141330 ID=Msa0947420-mRNA-1:exon:7983;Parent=Msa0947420-mRNA-1
chr6_3 CDS 30140546 30140609 30140546 ID=Msa0947420-mRNA-1:cds;Parent=Msa0947420-mRNA-1
chr6_3 CDS 30141330 30141928 30141330 ID=Msa0947420-mRNA-1:cds;Parent=Msa0947420-mRNA-1
chr6_3 three_prime_UTR 30141929 30142022 30141929 ID=Msa0947420-mRNA-1:three_prime_utr;Parent=Msa0947420-mRNA-1
Gene Sequence

>Msa0947420

AAAGAAGCTTCACCATCACCTTTGTTTATGGAGAAACAAGAACCATCTCAACCTACAAATCAAGGTAATGAAAAGAAAAAACATTATAGAGGTGTAAGGCAAAGACCTTGGGGGAAATGGGCAGCTGAAATAAGAGATCCTAAAAAAGGAGCAAGAGTGTGGCTTGGCACCTTTGAAACAGCTGAAGCTGCAGCTACTGCTTATGATGAAGCTGCATTGAGATTCAAAGGAAACAAAGCAAAGCTTAATTTCCCTCAACTCATTTCTAATTTGCCTTTGGATCCAACACCGCCGCGTAATAAGAATAATGCTTCATCTTCTTCCTCTTCTTCTTCGCAGCTTGCTCCACCGAAGCCTCTTTTTCCTTCGTCGTCATCATCAGAAGAAGTGTTCCCAAACCTAATGCAATATGCACAAGTGCTTTGTAGTAAGGATGATGAAGATCTTCGACGTGCCGCCTCAAGTCTTTACAATAATAATAATCATCAACAATATCATCATCAGAATAATATTAAAAATATTAATGAGCGATTTCGTTATTATAATTTGCCGCCATTTTTCTCAACACCATCAACAATGTCGCCGTCTTCTACTTCTAAGGATGTTGTTGTGCCTAGGGTTGGAGATTGTCCTCCTTTTGATAGGAACATGAGAGGGTCATAG
Protein sequence

>Msa0947420

KEASPSPLFMEKQEPSQPTNQGNEKKKHYRGVRQRPWGKWAAEIRDPKKGARVWLGTFETAEAAATAYDEAALRFKGNKAKLNFPQLISNLPLDPTPPRNKNNASSSSSSSSQLAPPKPLFPSSSSSEEVFPNLMQYAQVLCSKDDEDLRRAASSLYNNNNHQQYHHQNNIKNINERFRYYNLPPFFSTPSTMSPSSTSKDVVVPRVGDCPPFDRNMRGS*