Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728060 | XP_039690097.1 | 91.489 | 282 | 23 | 1 | 7 | 287 | 1 | 282 | 0.0 | 524 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728060 | G7JZA6 | 91.489 | 282 | 23 | 1 | 7 | 287 | 1 | 282 | 0.0 | 524 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0678930 | Msa0728060 | 0.817250 | 3.635515e-52 | -8.615850e-47 |
| Msa0694370 | Msa0728060 | 0.822342 | 2.493644e-53 | -8.615850e-47 |
| Msa0728060 | Msa0885290 | 0.801874 | 7.327451e-49 | -8.615850e-47 |
| Msa0728060 | Msa0909120 | 0.813171 | 2.929169e-51 | -8.615850e-47 |
| Msa0728060 | Msa1024240 | 0.810678 | 1.023087e-50 | -8.615850e-47 |
| Msa0728060 | Msa1044840 | 0.802417 | 5.666703e-49 | -8.615850e-47 |
| Msa0728060 | Msa1187950 | 0.802787 | 4.753037e-49 | -8.615850e-47 |
| Msa0728060 | Msa1251910 | 0.806121 | 9.592379e-50 | -8.615850e-47 |
| Msa0728060 | Msa1285930 | 0.814495 | 1.496604e-51 | -8.615850e-47 |
| Msa0728060 | Msa1438250 | 0.810936 | 8.995986e-51 | -8.615850e-47 |
| Msa0142220 | Msa0728060 | 0.822762 | 1.992036e-53 | -8.615850e-47 |
| Msa0360510 | Msa0728060 | 0.804868 | 1.756599e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0728060 | MtrunA17_Chr5g0420601 | 91.489 | 282 | 23 | 1 | 7 | 287 | 1 | 282 | 0.0 | 524 |
| Msa0728060 | MtrunA17_Chr1g0175751 | 63.636 | 319 | 78 | 4 | 7 | 287 | 1 | 319 | 1.11e-129 | 371 |
| Msa0728060 | MtrunA17_Chr1g0175781 | 65.172 | 290 | 92 | 3 | 7 | 287 | 1 | 290 | 3.65e-126 | 361 |
| Msa0728060 | MtrunA17_Chr1g0175761 | 46.774 | 310 | 97 | 6 | 7 | 287 | 1 | 271 | 1.10e-79 | 242 |
| Msa0728060 | MtrunA17_Chr5g0438881 | 46.038 | 265 | 79 | 5 | 25 | 287 | 4 | 206 | 2.93e-65 | 203 |
| Msa0728060 | MtrunA17_Chr5g0438871 | 48.454 | 194 | 70 | 4 | 26 | 216 | 20 | 186 | 1.24e-50 | 165 |
| Msa0728060 | MtrunA17_Chr1g0175821 | 44.949 | 198 | 82 | 2 | 92 | 286 | 42 | 215 | 1.50e-44 | 150 |
| Msa0728060 | MtrunA17_Chr1g0175791 | 42.763 | 152 | 62 | 2 | 92 | 243 | 98 | 224 | 2.80e-25 | 100 |
| Msa0728060 | MtrunA17_Chr1g0175811 | 31.132 | 212 | 97 | 3 | 86 | 287 | 34 | 206 | 2.37e-24 | 97.4 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
Find 53 sgRNAs with CRISPR-Local
Find 292 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| GACGAAAATTCAAAGAATAA+AGG | 0.303358 | 5_1:+31682608 | Msa0728060:CDS |
| GGGTTTGTCCGGGGAATTAT+TGG | 0.314079 | 5_1:-31682027 | None:intergenic |
| CATGTCATGGGGCAAAAGTT+AGG | 0.366818 | 5_1:+31682356 | Msa0728060:CDS |
| ATGGTGATACCACATCAGTT+TGG | 0.375047 | 5_1:+31682195 | Msa0728060:CDS |
| CTTTATCGCCTTATCATAAC+CGG | 0.377316 | 5_1:-31682729 | None:intergenic |
| GACTTTGGAAGAAACAATCT+TGG | 0.381691 | 5_1:+31682547 | Msa0728060:CDS |
| TGGTGATACCACATCAGTTT+GGG | 0.386948 | 5_1:+31682196 | Msa0728060:CDS |
| CGGAACCTGTCAGACTAGTT+TGG | 0.390381 | 5_1:-31682313 | None:intergenic |
| ACGAAAATTCAAAGAATAAA+GGG | 0.413551 | 5_1:+31682609 | Msa0728060:CDS |
| GACTGAAATGCTTATTCATA+AGG | 0.416847 | 5_1:-31682241 | None:intergenic |
| AAAGAGTTGCTTGAACATAA+TGG | 0.417254 | 5_1:+31681966 | Msa0728060:CDS |
| ATGTCATGGGGCAAAAGTTA+GGG | 0.430699 | 5_1:+31682357 | Msa0728060:CDS |
| AACCTTCCTTCTTCATGTCA+TGG | 0.432009 | 5_1:+31682343 | Msa0728060:CDS |
| AGACGAATTGAAGAAGACTT+TGG | 0.446036 | 5_1:+31682532 | Msa0728060:CDS |
| GTCGGATTATGAGAAGGATA+TGG | 0.448141 | 5_1:+31682490 | Msa0728060:CDS |
| TGAAGTAAAACGGCCTCGAC+TGG | 0.455463 | 5_1:+31682061 | Msa0728060:CDS |
| ACCTTCCTTCTTCATGTCAT+GGG | 0.462828 | 5_1:+31682344 | Msa0728060:CDS |
| AGTTACTGTTGACAAGTTGA+AGG | 0.474054 | 5_1:+31682661 | Msa0728060:CDS |
| GCGTTGTTCATCGGAGTGGC+TGG | 0.477394 | 5_1:+31682127 | Msa0728060:CDS |
| TATGAATAAGCATTTCAGTC+AGG | 0.483179 | 5_1:+31682244 | Msa0728060:CDS |
| AAAGAAAACAAGGCTTATGT+TGG | 0.503812 | 5_1:+31682389 | Msa0728060:CDS |
| GTACAAAGCCGGTTATGATA+AGG | 0.509385 | 5_1:+31682721 | Msa0728060:CDS |
| ACTTGGTCAAGGTTTAAGTC+CGG | 0.520256 | 5_1:-31682771 | None:intergenic |
| ATTTCAGTGCAGTACAAAGC+CGG | 0.528634 | 5_1:+31682710 | Msa0728060:CDS |
| TTTGCCCCATGACATGAAGA+AGG | 0.537569 | 5_1:-31682349 | None:intergenic |
| TTCGCTGAGATCAATGGTAG+TGG | 0.538642 | 5_1:+31682170 | Msa0728060:CDS |
| GTACTCCAAACTAGTCTGAC+AGG | 0.540417 | 5_1:+31682308 | Msa0728060:CDS |
| CTCATCTTTCACAAACATTG+TGG | 0.548663 | 5_1:-31681937 | None:intergenic |
| CCCCATGACATGAAGAAGGA+AGG | 0.552657 | 5_1:-31682345 | None:intergenic |
| TTGTCCGGGGAATTATTGGA+TGG | 0.554775 | 5_1:-31682023 | None:intergenic |
| GAATATGAAAAGAATTACAT+TGG | 0.565124 | 5_1:+31682443 | Msa0728060:CDS |
| AGCTCCATCCAATAATTCCC+CGG | 0.567846 | 5_1:+31682019 | Msa0728060:CDS |
| ATGTGTAAGGAACTCTCCAC+AGG | 0.568507 | 5_1:+31681995 | Msa0728060:CDS |
| AAACAACCAGCGTTGTTCAT+CGG | 0.574708 | 5_1:+31682118 | Msa0728060:CDS |
| AAGAAACAATCTTGGAGAAG+AGG | 0.582170 | 5_1:+31682555 | Msa0728060:CDS |
| ATGTTTGTGAAAGATGAGCC+AGG | 0.590438 | 5_1:+31681942 | Msa0728060:CDS |
| AAAGTTGTCGGATTATGAGA+AGG | 0.594647 | 5_1:+31682484 | Msa0728060:CDS |
| TTATTCATAAGGTCTCCAAA+AGG | 0.608048 | 5_1:-31682230 | None:intergenic |
| TTATTGGATGGAGCTTCCTG+TGG | 0.611342 | 5_1:-31682011 | None:intergenic |
| ATTATCACCCCAAACTGATG+TGG | 0.612236 | 5_1:-31682204 | None:intergenic |
| AAGAAGGAAGGTTGTACGAA+CGG | 0.613130 | 5_1:-31682333 | None:intergenic |
| GAGATCAATGGTAGTGGTGA+TGG | 0.613658 | 5_1:+31682176 | Msa0728060:CDS |
| GAACTTGAAACCTCCAGTCG+AGG | 0.613710 | 5_1:-31682074 | None:intergenic |
| CTTGGAGAAGAGGCGAATGG+TGG | 0.615999 | 5_1:+31682565 | Msa0728060:CDS |
| CCTTCCTTCTTCATGTCATG+GGG | 0.616078 | 5_1:+31682345 | Msa0728060:CDS |
| CGGAGTGGCTGGATGAAATG+TGG | 0.626651 | 5_1:+31682138 | Msa0728060:CDS |
| AGTAAAACGGCCTCGACTGG+AGG | 0.628790 | 5_1:+31682064 | Msa0728060:CDS |
| GGATACAGTCAAAGAAAACA+AGG | 0.633312 | 5_1:+31682379 | Msa0728060:CDS |
| ACCAGCGTTGTTCATCGGAG+TGG | 0.641835 | 5_1:+31682123 | Msa0728060:CDS |
| TGTCATGGGGCAAAAGTTAG+GGG | 0.644636 | 5_1:+31682358 | Msa0728060:CDS |
| GCCACTCCGATGAACAACGC+TGG | 0.652693 | 5_1:-31682124 | None:intergenic |
| AATCTTGGAGAAGAGGCGAA+TGG | 0.683086 | 5_1:+31682562 | Msa0728060:CDS |
| GGTGATACCACATCAGTTTG+GGG | 0.757322 | 5_1:+31682197 | Msa0728060:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | AAAAGAAATAAAATTAATGA+AGG | - | chr5_1:31681868-31681887 | None:intergenic | 10.0% |
| !! | AAAAGAAATAAAATTAATGA+AGG | - | chr5_1:31681868-31681887 | None:intergenic | 10.0% |
| !! | TGAAAAATGTTTATTATAAC+AGG | - | chr5_1:31681265-31681284 | None:intergenic | 15.0% |
| !! | ATAATCAAACATAGTAAATA+TGG | - | chr5_1:31681468-31681487 | None:intergenic | 15.0% |
| !! | ATAAATTTCATCTATGATTA+AGG | + | chr5_1:31681599-31681618 | Msa0728060:intron | 15.0% |
| !! | TAAATTTCATCTATGATTAA+GGG | + | chr5_1:31681600-31681619 | Msa0728060:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | - | chr5_1:31681695-31681714 | None:intergenic | 15.0% |
| !! | TGAAAAATGTTTATTATAAC+AGG | - | chr5_1:31681265-31681284 | None:intergenic | 15.0% |
| !! | ATAATCAAACATAGTAAATA+TGG | - | chr5_1:31681468-31681487 | None:intergenic | 15.0% |
| !! | ATAAATTTCATCTATGATTA+AGG | + | chr5_1:31681599-31681618 | Msa0728060:intron | 15.0% |
| !! | TAAATTTCATCTATGATTAA+GGG | + | chr5_1:31681600-31681619 | Msa0728060:intron | 15.0% |
| !!! | TCATTTTCTCAAATTATTAT+CGG | - | chr5_1:31681695-31681714 | None:intergenic | 15.0% |
| !! | ACTAAATTATTCAGAATACT+TGG | - | chr5_1:31681138-31681157 | None:intergenic | 20.0% |
| !! | AAGTATTCTGAATAATTTAG+TGG | + | chr5_1:31681137-31681156 | Msa0728060:intron | 20.0% |
| !! | CATAGTAAAGAATATTGTTT+AGG | - | chr5_1:31681497-31681516 | None:intergenic | 20.0% |
| !! | TATTCTTTACTATGATTCAT+CGG | + | chr5_1:31681503-31681522 | Msa0728060:intron | 20.0% |
| !! | AAATTTCATCTATGATTAAG+GGG | + | chr5_1:31681601-31681620 | Msa0728060:intron | 20.0% |
| !!! | TTTTACTTCAACATTTTTGA+GGG | - | chr5_1:31682051-31682070 | None:intergenic | 20.0% |
| !! | TCAAAAATGTTGAAGTAAAA+CGG | + | chr5_1:31682051-31682070 | Msa0728060:CDS | 20.0% |
| !! | AAAGTTTCATGAAAAAGTTA+AGG | + | chr5_1:31682268-31682287 | Msa0728060:CDS | 20.0% |
| !! | GAATATGAAAAGAATTACAT+TGG | + | chr5_1:31682443-31682462 | Msa0728060:CDS | 20.0% |
| !! | ACGAAAATTCAAAGAATAAA+GGG | + | chr5_1:31682609-31682628 | Msa0728060:CDS | 20.0% |
| !! | ACTAAATTATTCAGAATACT+TGG | - | chr5_1:31681138-31681157 | None:intergenic | 20.0% |
| !! | AAGTATTCTGAATAATTTAG+TGG | + | chr5_1:31681137-31681156 | Msa0728060:intron | 20.0% |
| !! | CATAGTAAAGAATATTGTTT+AGG | - | chr5_1:31681497-31681516 | None:intergenic | 20.0% |
| !! | TATTCTTTACTATGATTCAT+CGG | + | chr5_1:31681503-31681522 | Msa0728060:intron | 20.0% |
| !! | AAATTTCATCTATGATTAAG+GGG | + | chr5_1:31681601-31681620 | Msa0728060:intron | 20.0% |
| !!! | TTTTACTTCAACATTTTTGA+GGG | - | chr5_1:31682051-31682070 | None:intergenic | 20.0% |
| !! | TCAAAAATGTTGAAGTAAAA+CGG | + | chr5_1:31682051-31682070 | Msa0728060:CDS | 20.0% |
| !! | AAAGTTTCATGAAAAAGTTA+AGG | + | chr5_1:31682268-31682287 | Msa0728060:CDS | 20.0% |
| !! | GAATATGAAAAGAATTACAT+TGG | + | chr5_1:31682443-31682462 | Msa0728060:CDS | 20.0% |
| !! | ACGAAAATTCAAAGAATAAA+GGG | + | chr5_1:31682609-31682628 | Msa0728060:CDS | 20.0% |
| !!! | TGAGGTTTATTTGTTTTTGA+GGG | + | chr5_1:31681016-31681035 | Msa0728060:intron | 25.0% |
| ! | ATTAAACAAATTTGACACAC+AGG | - | chr5_1:31681195-31681214 | None:intergenic | 25.0% |
| ! | GTTCATTTATAGTTGTATTG+TGG | + | chr5_1:31681235-31681254 | Msa0728060:intron | 25.0% |
| ! | AATTTCATCTATGATTAAGG+GGG | + | chr5_1:31681602-31681621 | Msa0728060:intron | 25.0% |
| ! | ATAATGGTCAAAAATGTGTA+AGG | + | chr5_1:31681982-31682001 | Msa0728060:CDS | 25.0% |
| !!! | TTTACTTCAACATTTTTGAG+GGG | - | chr5_1:31682050-31682069 | None:intergenic | 25.0% |
| !! | GTTTTACTTCAACATTTTTG+AGG | - | chr5_1:31682052-31682071 | None:intergenic | 25.0% |
| ! | TACTGAATTGAAAAAGTTGT+CGG | + | chr5_1:31682472-31682491 | Msa0728060:CDS | 25.0% |
| ! | GACGAAAATTCAAAGAATAA+AGG | + | chr5_1:31682608-31682627 | Msa0728060:CDS | 25.0% |
| !!! | TGAGGTTTATTTGTTTTTGA+GGG | + | chr5_1:31681016-31681035 | Msa0728060:intron | 25.0% |
| ! | ATTAAACAAATTTGACACAC+AGG | - | chr5_1:31681195-31681214 | None:intergenic | 25.0% |
| ! | GTTCATTTATAGTTGTATTG+TGG | + | chr5_1:31681235-31681254 | Msa0728060:intron | 25.0% |
| ! | AATTTCATCTATGATTAAGG+GGG | + | chr5_1:31681602-31681621 | Msa0728060:intron | 25.0% |
| ! | ATAATGGTCAAAAATGTGTA+AGG | + | chr5_1:31681982-31682001 | Msa0728060:CDS | 25.0% |
| !!! | TTTACTTCAACATTTTTGAG+GGG | - | chr5_1:31682050-31682069 | None:intergenic | 25.0% |
| !! | GTTTTACTTCAACATTTTTG+AGG | - | chr5_1:31682052-31682071 | None:intergenic | 25.0% |
| ! | TACTGAATTGAAAAAGTTGT+CGG | + | chr5_1:31682472-31682491 | Msa0728060:CDS | 25.0% |
| ! | GACGAAAATTCAAAGAATAA+AGG | + | chr5_1:31682608-31682627 | Msa0728060:CDS | 25.0% |
| !!! | GTGAGGTTTATTTGTTTTTG+AGG | + | chr5_1:31681015-31681034 | Msa0728060:intron | 30.0% |
| CTTTGCAGTCTATTAAATTG+AGG | + | chr5_1:31681048-31681067 | Msa0728060:intron | 30.0% | |
| GTCTATTAAATTGAGGTTTC+AGG | + | chr5_1:31681055-31681074 | Msa0728060:intron | 30.0% | |
| ! | ATCAATAGTCTTGATAGTTG+AGG | + | chr5_1:31681213-31681232 | Msa0728060:intron | 30.0% |
| TTTAATAAACGCGTATTCCT+CGG | + | chr5_1:31681301-31681320 | Msa0728060:intron | 30.0% | |
| TTATGAATCTGGACAAAGAA+AGG | - | chr5_1:31681421-31681440 | None:intergenic | 30.0% | |
| AAATATGGTCCAGAACTAAA+AGG | - | chr5_1:31681453-31681472 | None:intergenic | 30.0% | |
| ACGTAATTCAGTGAAATCAT+AGG | + | chr5_1:31681714-31681733 | Msa0728060:intron | 30.0% | |
| CCTACTTACTAACTATGATT+AGG | - | chr5_1:31681786-31681805 | None:intergenic | 30.0% | |
| CCTAATCATAGTTAGTAAGT+AGG | + | chr5_1:31681783-31681802 | Msa0728060:intron | 30.0% | |
| ! | ATAAGTCTTGTACCAGTATT+TGG | + | chr5_1:31681824-31681843 | Msa0728060:intron | 30.0% |
| ! | TAAGTCTTGTACCAGTATTT+GGG | + | chr5_1:31681825-31681844 | Msa0728060:intron | 30.0% |
| TTTGCTTCCTACATTTATCT+TGG | + | chr5_1:31681885-31681904 | Msa0728060:intron | 30.0% | |
| ACTCTTCCTAATAAAGCAAA+TGG | - | chr5_1:31681915-31681934 | None:intergenic | 30.0% | |
| AAAGAGTTGCTTGAACATAA+TGG | + | chr5_1:31681966-31681985 | Msa0728060:CDS | 30.0% | |
| !!! | TTGTTTTCTGGAATTTGTAC+AGG | - | chr5_1:31682104-31682123 | None:intergenic | 30.0% |
| TTATTCATAAGGTCTCCAAA+AGG | - | chr5_1:31682233-31682252 | None:intergenic | 30.0% | |
| GACTGAAATGCTTATTCATA+AGG | - | chr5_1:31682244-31682263 | None:intergenic | 30.0% | |
| TATGAATAAGCATTTCAGTC+AGG | + | chr5_1:31682244-31682263 | Msa0728060:CDS | 30.0% | |
| TCATGAAAAAGTTAAGGAGT+TGG | + | chr5_1:31682274-31682293 | Msa0728060:CDS | 30.0% | |
| AAAGAAAACAAGGCTTATGT+TGG | + | chr5_1:31682389-31682408 | Msa0728060:CDS | 30.0% | |
| ! | TCTTTGAATTTTCGTCCATT+AGG | - | chr5_1:31682604-31682623 | None:intergenic | 30.0% |
| !!! | GTGAGGTTTATTTGTTTTTG+AGG | + | chr5_1:31681015-31681034 | Msa0728060:intron | 30.0% |
| CTTTGCAGTCTATTAAATTG+AGG | + | chr5_1:31681048-31681067 | Msa0728060:intron | 30.0% | |
| GTCTATTAAATTGAGGTTTC+AGG | + | chr5_1:31681055-31681074 | Msa0728060:intron | 30.0% | |
| ! | ATCAATAGTCTTGATAGTTG+AGG | + | chr5_1:31681213-31681232 | Msa0728060:intron | 30.0% |
| TTTAATAAACGCGTATTCCT+CGG | + | chr5_1:31681301-31681320 | Msa0728060:intron | 30.0% | |
| TTATGAATCTGGACAAAGAA+AGG | - | chr5_1:31681421-31681440 | None:intergenic | 30.0% | |
| AAATATGGTCCAGAACTAAA+AGG | - | chr5_1:31681453-31681472 | None:intergenic | 30.0% | |
| ACGTAATTCAGTGAAATCAT+AGG | + | chr5_1:31681714-31681733 | Msa0728060:intron | 30.0% | |
| CCTACTTACTAACTATGATT+AGG | - | chr5_1:31681786-31681805 | None:intergenic | 30.0% | |
| CCTAATCATAGTTAGTAAGT+AGG | + | chr5_1:31681783-31681802 | Msa0728060:intron | 30.0% | |
| ! | ATAAGTCTTGTACCAGTATT+TGG | + | chr5_1:31681824-31681843 | Msa0728060:intron | 30.0% |
| ! | TAAGTCTTGTACCAGTATTT+GGG | + | chr5_1:31681825-31681844 | Msa0728060:intron | 30.0% |
| TTTGCTTCCTACATTTATCT+TGG | + | chr5_1:31681885-31681904 | Msa0728060:intron | 30.0% | |
| ACTCTTCCTAATAAAGCAAA+TGG | - | chr5_1:31681915-31681934 | None:intergenic | 30.0% | |
| AAAGAGTTGCTTGAACATAA+TGG | + | chr5_1:31681966-31681985 | Msa0728060:CDS | 30.0% | |
| !!! | TTGTTTTCTGGAATTTGTAC+AGG | - | chr5_1:31682104-31682123 | None:intergenic | 30.0% |
| TTATTCATAAGGTCTCCAAA+AGG | - | chr5_1:31682233-31682252 | None:intergenic | 30.0% | |
| GACTGAAATGCTTATTCATA+AGG | - | chr5_1:31682244-31682263 | None:intergenic | 30.0% | |
| TATGAATAAGCATTTCAGTC+AGG | + | chr5_1:31682244-31682263 | Msa0728060:CDS | 30.0% | |
| TCATGAAAAAGTTAAGGAGT+TGG | + | chr5_1:31682274-31682293 | Msa0728060:CDS | 30.0% | |
| AAAGAAAACAAGGCTTATGT+TGG | + | chr5_1:31682389-31682408 | Msa0728060:CDS | 30.0% | |
| ! | TCTTTGAATTTTCGTCCATT+AGG | - | chr5_1:31682604-31682623 | None:intergenic | 30.0% |
| TACATGGTGAGAATATTGTG+AGG | + | chr5_1:31680998-31681017 | Msa0728060:intron | 35.0% | |
| ! | GTTTCAGGTGTTTGTAAATG+AGG | + | chr5_1:31681070-31681089 | Msa0728060:intron | 35.0% |
| TTAGACATCAATAACCGCAA+GGG | - | chr5_1:31681369-31681388 | None:intergenic | 35.0% | |
| GGATGCTAGATTTATGAATC+TGG | - | chr5_1:31681432-31681451 | None:intergenic | 35.0% | |
| !!! | ATCTAGCATCCTTTTAGTTC+TGG | + | chr5_1:31681441-31681460 | Msa0728060:intron | 35.0% |
| ! | ACTACCAGTTTTGCAACAAT+TGG | + | chr5_1:31681540-31681559 | Msa0728060:intron | 35.0% |
| ATTCAGTGAAATCATAGGTG+CGG | + | chr5_1:31681719-31681738 | Msa0728060:intron | 35.0% | |
| TCATAGTTAGTAAGTAGGAG+TGG | + | chr5_1:31681788-31681807 | Msa0728060:intron | 35.0% | |
| AAAAGAAACTGCCCAAATAC+TGG | - | chr5_1:31681839-31681858 | None:intergenic | 35.0% | |
| TGGAAAGCCAAGATAAATGT+AGG | - | chr5_1:31681895-31681914 | None:intergenic | 35.0% | |
| ! | GGCTTTCCATTTGCTTTATT+AGG | + | chr5_1:31681906-31681925 | Msa0728060:intron | 35.0% |
| CTCATCTTTCACAAACATTG+TGG | - | chr5_1:31681940-31681959 | None:intergenic | 35.0% | |
| !! | TCATTTTTCGCTGAGATCAA+TGG | + | chr5_1:31682164-31682183 | Msa0728060:CDS | 35.0% |
| ! | TGGGGTGATAATTTTCCTTT+TGG | + | chr5_1:31682215-31682234 | Msa0728060:CDS | 35.0% |
| GGATACAGTCAAAGAAAACA+AGG | + | chr5_1:31682379-31682398 | Msa0728060:CDS | 35.0% | |
| AAAGTTGTCGGATTATGAGA+AGG | + | chr5_1:31682484-31682503 | Msa0728060:CDS | 35.0% | |
| AGACGAATTGAAGAAGACTT+TGG | + | chr5_1:31682532-31682551 | Msa0728060:CDS | 35.0% | |
| ! | GACTTTGGAAGAAACAATCT+TGG | + | chr5_1:31682547-31682566 | Msa0728060:CDS | 35.0% |
| AAGAAACAATCTTGGAGAAG+AGG | + | chr5_1:31682555-31682574 | Msa0728060:CDS | 35.0% | |
| ! | AGTTACTGTTGACAAGTTGA+AGG | + | chr5_1:31682661-31682680 | Msa0728060:CDS | 35.0% |
| CTTTATCGCCTTATCATAAC+CGG | - | chr5_1:31682732-31682751 | None:intergenic | 35.0% | |
| !!! | CAAGTTGTATTTTTTGCGTC+CGG | + | chr5_1:31682752-31682771 | Msa0728060:CDS | 35.0% |
| TACATGGTGAGAATATTGTG+AGG | + | chr5_1:31680998-31681017 | Msa0728060:intron | 35.0% | |
| ! | GTTTCAGGTGTTTGTAAATG+AGG | + | chr5_1:31681070-31681089 | Msa0728060:intron | 35.0% |
| TTAGACATCAATAACCGCAA+GGG | - | chr5_1:31681369-31681388 | None:intergenic | 35.0% | |
| GGATGCTAGATTTATGAATC+TGG | - | chr5_1:31681432-31681451 | None:intergenic | 35.0% | |
| !!! | ATCTAGCATCCTTTTAGTTC+TGG | + | chr5_1:31681441-31681460 | Msa0728060:intron | 35.0% |
| ! | ACTACCAGTTTTGCAACAAT+TGG | + | chr5_1:31681540-31681559 | Msa0728060:intron | 35.0% |
| ATTCAGTGAAATCATAGGTG+CGG | + | chr5_1:31681719-31681738 | Msa0728060:intron | 35.0% | |
| TCATAGTTAGTAAGTAGGAG+TGG | + | chr5_1:31681788-31681807 | Msa0728060:intron | 35.0% | |
| AAAAGAAACTGCCCAAATAC+TGG | - | chr5_1:31681839-31681858 | None:intergenic | 35.0% | |
| TGGAAAGCCAAGATAAATGT+AGG | - | chr5_1:31681895-31681914 | None:intergenic | 35.0% | |
| ! | GGCTTTCCATTTGCTTTATT+AGG | + | chr5_1:31681906-31681925 | Msa0728060:intron | 35.0% |
| CTCATCTTTCACAAACATTG+TGG | - | chr5_1:31681940-31681959 | None:intergenic | 35.0% | |
| !! | TCATTTTTCGCTGAGATCAA+TGG | + | chr5_1:31682164-31682183 | Msa0728060:CDS | 35.0% |
| ! | TGGGGTGATAATTTTCCTTT+TGG | + | chr5_1:31682215-31682234 | Msa0728060:CDS | 35.0% |
| GGATACAGTCAAAGAAAACA+AGG | + | chr5_1:31682379-31682398 | Msa0728060:CDS | 35.0% | |
| AAAGTTGTCGGATTATGAGA+AGG | + | chr5_1:31682484-31682503 | Msa0728060:CDS | 35.0% | |
| AGACGAATTGAAGAAGACTT+TGG | + | chr5_1:31682532-31682551 | Msa0728060:CDS | 35.0% | |
| ! | GACTTTGGAAGAAACAATCT+TGG | + | chr5_1:31682547-31682566 | Msa0728060:CDS | 35.0% |
| AAGAAACAATCTTGGAGAAG+AGG | + | chr5_1:31682555-31682574 | Msa0728060:CDS | 35.0% | |
| ! | AGTTACTGTTGACAAGTTGA+AGG | + | chr5_1:31682661-31682680 | Msa0728060:CDS | 35.0% |
| CTTTATCGCCTTATCATAAC+CGG | - | chr5_1:31682732-31682751 | None:intergenic | 35.0% | |
| !!! | CAAGTTGTATTTTTTGCGTC+CGG | + | chr5_1:31682752-31682771 | Msa0728060:CDS | 35.0% |
| GGTGTTTGTAAATGAGGTGT+TGG | + | chr5_1:31681076-31681095 | Msa0728060:intron | 40.0% | |
| ! | ACCGTCTTCAAAACTTTTCG+TGG | + | chr5_1:31681160-31681179 | Msa0728060:intron | 40.0% |
| !!! | CCCACGAAAAGTTTTGAAGA+CGG | - | chr5_1:31681164-31681183 | None:intergenic | 40.0% |
| ! | CCGTCTTCAAAACTTTTCGT+GGG | + | chr5_1:31681161-31681180 | Msa0728060:intron | 40.0% |
| GTATTCCTCGGAAAAGTCAT+AGG | + | chr5_1:31681313-31681332 | Msa0728060:intron | 40.0% | |
| AATAACCGCAAGGGAAATTG+CGG | - | chr5_1:31681360-31681379 | None:intergenic | 40.0% | |
| GTTAGACATCAATAACCGCA+AGG | - | chr5_1:31681370-31681389 | None:intergenic | 40.0% | |
| ATGTCTAACTAAGCCATACC+AGG | + | chr5_1:31681381-31681400 | Msa0728060:intron | 40.0% | |
| TGTCTAACTAAGCCATACCA+GGG | + | chr5_1:31681382-31681401 | Msa0728060:intron | 40.0% | |
| AAGAAAGTTCTTCCCTGGTA+TGG | - | chr5_1:31681397-31681416 | None:intergenic | 40.0% | |
| AAGGAAAGAAAGTTCTTCCC+TGG | - | chr5_1:31681402-31681421 | None:intergenic | 40.0% | |
| GACACCAATTGTTGCAAAAC+TGG | - | chr5_1:31681547-31681566 | None:intergenic | 40.0% | |
| TACATCTTCCTATCCATCAG+GGG | - | chr5_1:31681569-31681588 | None:intergenic | 40.0% | |
| CTACATCTTCCTATCCATCA+GGG | - | chr5_1:31681570-31681589 | None:intergenic | 40.0% | |
| TCTACATCTTCCTATCCATC+AGG | - | chr5_1:31681571-31681590 | None:intergenic | 40.0% | |
| TTCATCTATGATTAAGGGGG+TGG | + | chr5_1:31681605-31681624 | Msa0728060:intron | 40.0% | |
| TGGTAGTAAGCTATGAAGCA+AGG | + | chr5_1:31681628-31681647 | Msa0728060:intron | 40.0% | |
| !! | TATTATCGGTGTCTGCGTTT+TGG | - | chr5_1:31681681-31681700 | None:intergenic | 40.0% |
| AACTATGATTAGGTGTGTCC+CGG | - | chr5_1:31681776-31681795 | None:intergenic | 40.0% | |
| TTAGTAAGTAGGAGTGGTGA+TGG | + | chr5_1:31681794-31681813 | Msa0728060:intron | 40.0% | |
| ATGTTTGTGAAAGATGAGCC+AGG | + | chr5_1:31681942-31681961 | Msa0728060:CDS | 40.0% | |
| ! | TGTTCAAGCAACTCTTTTCC+TGG | - | chr5_1:31681963-31681982 | None:intergenic | 40.0% |
| !! | ACATTTTTGAGGGGTTTGTC+CGG | - | chr5_1:31682041-31682060 | None:intergenic | 40.0% |
| AAACAACCAGCGTTGTTCAT+CGG | + | chr5_1:31682118-31682137 | Msa0728060:CDS | 40.0% | |
| ATGGTGATACCACATCAGTT+TGG | + | chr5_1:31682195-31682214 | Msa0728060:CDS | 40.0% | |
| TGGTGATACCACATCAGTTT+GGG | + | chr5_1:31682196-31682215 | Msa0728060:CDS | 40.0% | |
| ATTATCACCCCAAACTGATG+TGG | - | chr5_1:31682207-31682226 | None:intergenic | 40.0% | |
| AAGAAGGAAGGTTGTACGAA+CGG | - | chr5_1:31682336-31682355 | None:intergenic | 40.0% | |
| AACCTTCCTTCTTCATGTCA+TGG | + | chr5_1:31682343-31682362 | Msa0728060:CDS | 40.0% | |
| ACCTTCCTTCTTCATGTCAT+GGG | + | chr5_1:31682344-31682363 | Msa0728060:CDS | 40.0% | |
| ATGTCATGGGGCAAAAGTTA+GGG | + | chr5_1:31682357-31682376 | Msa0728060:CDS | 40.0% | |
| GTCGGATTATGAGAAGGATA+TGG | + | chr5_1:31682490-31682509 | Msa0728060:CDS | 40.0% | |
| GGCAAGAGAAAAAGACCTAA+TGG | + | chr5_1:31682586-31682605 | Msa0728060:CDS | 40.0% | |
| ATTTCAGTGCAGTACAAAGC+CGG | + | chr5_1:31682710-31682729 | Msa0728060:CDS | 40.0% | |
| GTACAAAGCCGGTTATGATA+AGG | + | chr5_1:31682721-31682740 | Msa0728060:CDS | 40.0% | |
| GGTGTTTGTAAATGAGGTGT+TGG | + | chr5_1:31681076-31681095 | Msa0728060:intron | 40.0% | |
| ! | ACCGTCTTCAAAACTTTTCG+TGG | + | chr5_1:31681160-31681179 | Msa0728060:intron | 40.0% |
| !!! | CCCACGAAAAGTTTTGAAGA+CGG | - | chr5_1:31681164-31681183 | None:intergenic | 40.0% |
| ! | CCGTCTTCAAAACTTTTCGT+GGG | + | chr5_1:31681161-31681180 | Msa0728060:intron | 40.0% |
| GTATTCCTCGGAAAAGTCAT+AGG | + | chr5_1:31681313-31681332 | Msa0728060:intron | 40.0% | |
| AATAACCGCAAGGGAAATTG+CGG | - | chr5_1:31681360-31681379 | None:intergenic | 40.0% | |
| GTTAGACATCAATAACCGCA+AGG | - | chr5_1:31681370-31681389 | None:intergenic | 40.0% | |
| ATGTCTAACTAAGCCATACC+AGG | + | chr5_1:31681381-31681400 | Msa0728060:intron | 40.0% | |
| TGTCTAACTAAGCCATACCA+GGG | + | chr5_1:31681382-31681401 | Msa0728060:intron | 40.0% | |
| AAGAAAGTTCTTCCCTGGTA+TGG | - | chr5_1:31681397-31681416 | None:intergenic | 40.0% | |
| AAGGAAAGAAAGTTCTTCCC+TGG | - | chr5_1:31681402-31681421 | None:intergenic | 40.0% | |
| GACACCAATTGTTGCAAAAC+TGG | - | chr5_1:31681547-31681566 | None:intergenic | 40.0% | |
| TACATCTTCCTATCCATCAG+GGG | - | chr5_1:31681569-31681588 | None:intergenic | 40.0% | |
| CTACATCTTCCTATCCATCA+GGG | - | chr5_1:31681570-31681589 | None:intergenic | 40.0% | |
| TCTACATCTTCCTATCCATC+AGG | - | chr5_1:31681571-31681590 | None:intergenic | 40.0% | |
| TTCATCTATGATTAAGGGGG+TGG | + | chr5_1:31681605-31681624 | Msa0728060:intron | 40.0% | |
| TGGTAGTAAGCTATGAAGCA+AGG | + | chr5_1:31681628-31681647 | Msa0728060:intron | 40.0% | |
| !! | TATTATCGGTGTCTGCGTTT+TGG | - | chr5_1:31681681-31681700 | None:intergenic | 40.0% |
| AACTATGATTAGGTGTGTCC+CGG | - | chr5_1:31681776-31681795 | None:intergenic | 40.0% | |
| TTAGTAAGTAGGAGTGGTGA+TGG | + | chr5_1:31681794-31681813 | Msa0728060:intron | 40.0% | |
| ATGTTTGTGAAAGATGAGCC+AGG | + | chr5_1:31681942-31681961 | Msa0728060:CDS | 40.0% | |
| ! | TGTTCAAGCAACTCTTTTCC+TGG | - | chr5_1:31681963-31681982 | None:intergenic | 40.0% |
| !! | ACATTTTTGAGGGGTTTGTC+CGG | - | chr5_1:31682041-31682060 | None:intergenic | 40.0% |
| AAACAACCAGCGTTGTTCAT+CGG | + | chr5_1:31682118-31682137 | Msa0728060:CDS | 40.0% | |
| ATGGTGATACCACATCAGTT+TGG | + | chr5_1:31682195-31682214 | Msa0728060:CDS | 40.0% | |
| TGGTGATACCACATCAGTTT+GGG | + | chr5_1:31682196-31682215 | Msa0728060:CDS | 40.0% | |
| ATTATCACCCCAAACTGATG+TGG | - | chr5_1:31682207-31682226 | None:intergenic | 40.0% | |
| AAGAAGGAAGGTTGTACGAA+CGG | - | chr5_1:31682336-31682355 | None:intergenic | 40.0% | |
| AACCTTCCTTCTTCATGTCA+TGG | + | chr5_1:31682343-31682362 | Msa0728060:CDS | 40.0% | |
| ACCTTCCTTCTTCATGTCAT+GGG | + | chr5_1:31682344-31682363 | Msa0728060:CDS | 40.0% | |
| ATGTCATGGGGCAAAAGTTA+GGG | + | chr5_1:31682357-31682376 | Msa0728060:CDS | 40.0% | |
| GTCGGATTATGAGAAGGATA+TGG | + | chr5_1:31682490-31682509 | Msa0728060:CDS | 40.0% | |
| GGCAAGAGAAAAAGACCTAA+TGG | + | chr5_1:31682586-31682605 | Msa0728060:CDS | 40.0% | |
| ATTTCAGTGCAGTACAAAGC+CGG | + | chr5_1:31682710-31682729 | Msa0728060:CDS | 40.0% | |
| GTACAAAGCCGGTTATGATA+AGG | + | chr5_1:31682721-31682740 | Msa0728060:CDS | 40.0% | |
| CTCGGAAAAGTCATAGGATG+CGG | + | chr5_1:31681319-31681338 | Msa0728060:intron | 45.0% | |
| ! | AAGGGAAATTGCGGCTTGTT+TGG | - | chr5_1:31681351-31681370 | None:intergenic | 45.0% |
| ATCTATGATTAAGGGGGTGG+TGG | + | chr5_1:31681608-31681627 | Msa0728060:intron | 45.0% | |
| ATGTGTAAGGAACTCTCCAC+AGG | + | chr5_1:31681995-31682014 | Msa0728060:CDS | 45.0% | |
| TTATTGGATGGAGCTTCCTG+TGG | - | chr5_1:31682014-31682033 | None:intergenic | 45.0% | |
| AGCTCCATCCAATAATTCCC+CGG | + | chr5_1:31682019-31682038 | Msa0728060:CDS | 45.0% | |
| TTGTCCGGGGAATTATTGGA+TGG | - | chr5_1:31682026-31682045 | None:intergenic | 45.0% | |
| !! | ATTTTTGAGGGGTTTGTCCG+GGG | - | chr5_1:31682039-31682058 | None:intergenic | 45.0% |
| !! | CATTTTTGAGGGGTTTGTCC+GGG | - | chr5_1:31682040-31682059 | None:intergenic | 45.0% |
| !! | GAACAACGCTGGTTGTTTTC+TGG | - | chr5_1:31682116-31682135 | None:intergenic | 45.0% |
| TTCGCTGAGATCAATGGTAG+TGG | + | chr5_1:31682170-31682189 | Msa0728060:CDS | 45.0% | |
| !! | GAGATCAATGGTAGTGGTGA+TGG | + | chr5_1:31682176-31682195 | Msa0728060:CDS | 45.0% |
| GGTGATACCACATCAGTTTG+GGG | + | chr5_1:31682197-31682216 | Msa0728060:CDS | 45.0% | |
| ! | GTACTCCAAACTAGTCTGAC+AGG | + | chr5_1:31682308-31682327 | Msa0728060:CDS | 45.0% |
| CCTTCCTTCTTCATGTCATG+GGG | + | chr5_1:31682345-31682364 | Msa0728060:CDS | 45.0% | |
| TTTGCCCCATGACATGAAGA+AGG | - | chr5_1:31682352-31682371 | None:intergenic | 45.0% | |
| CATGTCATGGGGCAAAAGTT+AGG | + | chr5_1:31682356-31682375 | Msa0728060:CDS | 45.0% | |
| TGTCATGGGGCAAAAGTTAG+GGG | + | chr5_1:31682358-31682377 | Msa0728060:CDS | 45.0% | |
| AATCTTGGAGAAGAGGCGAA+TGG | + | chr5_1:31682562-31682581 | Msa0728060:CDS | 45.0% | |
| CTCGGAAAAGTCATAGGATG+CGG | + | chr5_1:31681319-31681338 | Msa0728060:intron | 45.0% | |
| ! | AAGGGAAATTGCGGCTTGTT+TGG | - | chr5_1:31681351-31681370 | None:intergenic | 45.0% |
| ATCTATGATTAAGGGGGTGG+TGG | + | chr5_1:31681608-31681627 | Msa0728060:intron | 45.0% | |
| ATGTGTAAGGAACTCTCCAC+AGG | + | chr5_1:31681995-31682014 | Msa0728060:CDS | 45.0% | |
| TTATTGGATGGAGCTTCCTG+TGG | - | chr5_1:31682014-31682033 | None:intergenic | 45.0% | |
| AGCTCCATCCAATAATTCCC+CGG | + | chr5_1:31682019-31682038 | Msa0728060:CDS | 45.0% | |
| TTGTCCGGGGAATTATTGGA+TGG | - | chr5_1:31682026-31682045 | None:intergenic | 45.0% | |
| !! | ATTTTTGAGGGGTTTGTCCG+GGG | - | chr5_1:31682039-31682058 | None:intergenic | 45.0% |
| !! | CATTTTTGAGGGGTTTGTCC+GGG | - | chr5_1:31682040-31682059 | None:intergenic | 45.0% |
| !! | GAACAACGCTGGTTGTTTTC+TGG | - | chr5_1:31682116-31682135 | None:intergenic | 45.0% |
| TTCGCTGAGATCAATGGTAG+TGG | + | chr5_1:31682170-31682189 | Msa0728060:CDS | 45.0% | |
| !! | GAGATCAATGGTAGTGGTGA+TGG | + | chr5_1:31682176-31682195 | Msa0728060:CDS | 45.0% |
| GGTGATACCACATCAGTTTG+GGG | + | chr5_1:31682197-31682216 | Msa0728060:CDS | 45.0% | |
| ! | GTACTCCAAACTAGTCTGAC+AGG | + | chr5_1:31682308-31682327 | Msa0728060:CDS | 45.0% |
| CCTTCCTTCTTCATGTCATG+GGG | + | chr5_1:31682345-31682364 | Msa0728060:CDS | 45.0% | |
| TTTGCCCCATGACATGAAGA+AGG | - | chr5_1:31682352-31682371 | None:intergenic | 45.0% | |
| CATGTCATGGGGCAAAAGTT+AGG | + | chr5_1:31682356-31682375 | Msa0728060:CDS | 45.0% | |
| TGTCATGGGGCAAAAGTTAG+GGG | + | chr5_1:31682358-31682377 | Msa0728060:CDS | 45.0% | |
| AATCTTGGAGAAGAGGCGAA+TGG | + | chr5_1:31682562-31682581 | Msa0728060:CDS | 45.0% | |
| ! | CGCATCCTATGACTTTTCCG+AGG | - | chr5_1:31681321-31681340 | None:intergenic | 50.0% |
| ACAAGCCGCAATTTCCCTTG+CGG | + | chr5_1:31681352-31681371 | Msa0728060:intron | 50.0% | |
| ! | CAACAATTGGTGTCCCCTGA+TGG | + | chr5_1:31681553-31681572 | Msa0728060:intron | 50.0% |
| ! | ATTGGTGTCCCCTGATGGAT+AGG | + | chr5_1:31681558-31681577 | Msa0728060:intron | 50.0% |
| TGAAGCAAGGACACGAACAC+CGG | + | chr5_1:31681641-31681660 | Msa0728060:intron | 50.0% | |
| !! | TTTGGTGTCCGTGTCATGTC+CGG | - | chr5_1:31681663-31681682 | None:intergenic | 50.0% |
| GGGTTTGTCCGGGGAATTAT+TGG | - | chr5_1:31682030-31682049 | None:intergenic | 50.0% | |
| TGAAGTAAAACGGCCTCGAC+TGG | + | chr5_1:31682061-31682080 | Msa0728060:CDS | 50.0% | |
| GAACTTGAAACCTCCAGTCG+AGG | - | chr5_1:31682077-31682096 | None:intergenic | 50.0% | |
| ! | CGGAACCTGTCAGACTAGTT+TGG | - | chr5_1:31682316-31682335 | None:intergenic | 50.0% |
| CCCCATGACATGAAGAAGGA+AGG | - | chr5_1:31682348-31682367 | None:intergenic | 50.0% | |
| ! | CGCATCCTATGACTTTTCCG+AGG | - | chr5_1:31681321-31681340 | None:intergenic | 50.0% |
| ACAAGCCGCAATTTCCCTTG+CGG | + | chr5_1:31681352-31681371 | Msa0728060:intron | 50.0% | |
| ! | CAACAATTGGTGTCCCCTGA+TGG | + | chr5_1:31681553-31681572 | Msa0728060:intron | 50.0% |
| ! | ATTGGTGTCCCCTGATGGAT+AGG | + | chr5_1:31681558-31681577 | Msa0728060:intron | 50.0% |
| TGAAGCAAGGACACGAACAC+CGG | + | chr5_1:31681641-31681660 | Msa0728060:intron | 50.0% | |
| !! | TTTGGTGTCCGTGTCATGTC+CGG | - | chr5_1:31681663-31681682 | None:intergenic | 50.0% |
| GGGTTTGTCCGGGGAATTAT+TGG | - | chr5_1:31682030-31682049 | None:intergenic | 50.0% | |
| TGAAGTAAAACGGCCTCGAC+TGG | + | chr5_1:31682061-31682080 | Msa0728060:CDS | 50.0% | |
| GAACTTGAAACCTCCAGTCG+AGG | - | chr5_1:31682077-31682096 | None:intergenic | 50.0% | |
| ! | CGGAACCTGTCAGACTAGTT+TGG | - | chr5_1:31682316-31682335 | None:intergenic | 50.0% |
| CCCCATGACATGAAGAAGGA+AGG | - | chr5_1:31682348-31682367 | None:intergenic | 50.0% | |
| CACGAACACCGGACATGACA+CGG | + | chr5_1:31681652-31681671 | Msa0728060:intron | 55.0% | |
| AGTAAAACGGCCTCGACTGG+AGG | + | chr5_1:31682064-31682083 | Msa0728060:CDS | 55.0% | |
| ACCAGCGTTGTTCATCGGAG+TGG | + | chr5_1:31682123-31682142 | Msa0728060:CDS | 55.0% | |
| CGGAGTGGCTGGATGAAATG+TGG | + | chr5_1:31682138-31682157 | Msa0728060:CDS | 55.0% | |
| CTTGGAGAAGAGGCGAATGG+TGG | + | chr5_1:31682565-31682584 | Msa0728060:CDS | 55.0% | |
| CACGAACACCGGACATGACA+CGG | + | chr5_1:31681652-31681671 | Msa0728060:intron | 55.0% | |
| AGTAAAACGGCCTCGACTGG+AGG | + | chr5_1:31682064-31682083 | Msa0728060:CDS | 55.0% | |
| ACCAGCGTTGTTCATCGGAG+TGG | + | chr5_1:31682123-31682142 | Msa0728060:CDS | 55.0% | |
| CGGAGTGGCTGGATGAAATG+TGG | + | chr5_1:31682138-31682157 | Msa0728060:CDS | 55.0% | |
| CTTGGAGAAGAGGCGAATGG+TGG | + | chr5_1:31682565-31682584 | Msa0728060:CDS | 55.0% | |
| !! | TCATAGGTGCGGTGCCGTGT+CGG | + | chr5_1:31681730-31681749 | Msa0728060:intron | 60.0% |
| ! | ACATGCGTCGGTGTCCGACA+CGG | - | chr5_1:31681747-31681766 | None:intergenic | 60.0% |
| CACCGACGCATGTCTGACAC+CGG | + | chr5_1:31681754-31681773 | Msa0728060:intron | 60.0% | |
| ACCGACGCATGTCTGACACC+GGG | + | chr5_1:31681755-31681774 | Msa0728060:intron | 60.0% | |
| ! | TCCCGGTGTCAGACATGCGT+CGG | - | chr5_1:31681759-31681778 | None:intergenic | 60.0% |
| GCCACTCCGATGAACAACGC+TGG | - | chr5_1:31682127-31682146 | None:intergenic | 60.0% | |
| GCGTTGTTCATCGGAGTGGC+TGG | + | chr5_1:31682127-31682146 | Msa0728060:CDS | 60.0% | |
| !! | TCATAGGTGCGGTGCCGTGT+CGG | + | chr5_1:31681730-31681749 | Msa0728060:intron | 60.0% |
| ! | ACATGCGTCGGTGTCCGACA+CGG | - | chr5_1:31681747-31681766 | None:intergenic | 60.0% |
| CACCGACGCATGTCTGACAC+CGG | + | chr5_1:31681754-31681773 | Msa0728060:intron | 60.0% | |
| ACCGACGCATGTCTGACACC+GGG | + | chr5_1:31681755-31681774 | Msa0728060:intron | 60.0% | |
| ! | TCCCGGTGTCAGACATGCGT+CGG | - | chr5_1:31681759-31681778 | None:intergenic | 60.0% |
| GCCACTCCGATGAACAACGC+TGG | - | chr5_1:31682127-31682146 | None:intergenic | 60.0% | |
| GCGTTGTTCATCGGAGTGGC+TGG | + | chr5_1:31682127-31682146 | Msa0728060:CDS | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 31680993 | 31682787 | 31680993 | ID=Msa0728060;Name=Msa0728060 |
| chr5_1 | mRNA | 31680993 | 31682787 | 31680993 | ID=Msa0728060-mRNA-1;Parent=Msa0728060;Name=Msa0728060-mRNA-1;_AED=0.08;_eAED=0.08;_QI=0|0|0|0.5|1|1|2|0|287 |
| chr5_1 | exon | 31680993 | 31680996 | 31680993 | ID=Msa0728060-mRNA-1:exon:10380;Parent=Msa0728060-mRNA-1 |
| chr5_1 | exon | 31681928 | 31682787 | 31681928 | ID=Msa0728060-mRNA-1:exon:10381;Parent=Msa0728060-mRNA-1 |
| chr5_1 | CDS | 31680993 | 31680996 | 31680993 | ID=Msa0728060-mRNA-1:cds;Parent=Msa0728060-mRNA-1 |
| chr5_1 | CDS | 31681928 | 31682787 | 31681928 | ID=Msa0728060-mRNA-1:cds;Parent=Msa0728060-mRNA-1 |
| Gene Sequence |
| Protein sequence |
