AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0360510


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0360510 MtrunA17_Chr3g0098461 79.747 158 24 2 1 150 1 158 3.49e-83 253
Msa0360510 MtrunA17_Chr3g0098461 68.595 121 37 1 150 270 40 159 1.73e-50 169
Msa0360510 MtrunA17_Chr3g0098471 66.864 169 18 2 269 403 20 184 1.01e-63 204
Msa0360510 MtrunA17_Chr4g0038111 74.038 104 27 0 330 433 321 424 7.26e-46 168
Msa0360510 MtrunA17_Chr0c05g0492161 65.979 97 26 1 1 90 1 97 1.40e-35 128
Msa0360510 MtrunA17_Chr1g0163591 43.333 120 64 2 332 447 276 395 1.26e-24 107
Msa0360510 MtrunA17_Chr1g0163591 34.320 169 94 2 279 430 76 244 3.82e-23 102
Msa0360510 MtrunA17_Chr3g0090311 37.069 116 67 5 152 264 45 157 1.05e-12 66.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0360510 AT3G18610.2 50.909 110 53 1 328 437 305 413 2.75e-27 115
Msa0360510 AT3G18610.3 50.909 110 53 1 328 437 335 443 2.81e-27 115
Msa0360510 AT3G18610.1 50.909 110 53 1 328 437 365 473 3.07e-27 115
Msa0360510 AT1G48920.1 44.068 118 57 4 328 437 278 394 2.81e-24 106
Msa0360510 AT1G45100.1 46.053 76 41 0 348 423 247 322 2.52e-11 65.9
Msa0360510 AT5G13780.1 36.842 114 66 5 152 262 45 155 6.79e-11 62.0

Find 117 sgRNAs with CRISPR-Local

Find 529 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATAAGGATGGAAAGCTTAA+AGG 0.173752 3_1:-49866329 Msa0360510:CDS
TAAAGATCGTCTTTCTTTAC+AGG 0.196172 3_1:+49867093 None:intergenic
AGTAATTACCTGTTATTATT+AGG 0.205492 3_1:+49866080 None:intergenic
GGCTGAAATGGACTTGAAAA+AGG 0.276827 3_1:-49873233 Msa0360510:intron
AATGCGTCAGTGTTGGTCTT+TGG 0.291887 3_1:+49873060 None:intergenic
TCATCTTCTGAAGAATCTTC+TGG 0.335928 3_1:-49867066 Msa0360510:CDS
TGTTGACCTATATAAGATTC+TGG 0.336459 3_1:-49873464 Msa0360510:CDS
ACTCCTTCTCTCCGAAAGAT+AGG 0.337370 3_1:+49869016 None:intergenic
ATGCGTCAGTGTTGGTCTTT+GGG 0.337802 3_1:+49873061 None:intergenic
TTCTACAACGATGGTGTCCC+CGG 0.363342 3_1:-49873512 None:intergenic
ACTTGTGAACATGGCTGAAA+TGG 0.363887 3_1:-49873245 Msa0360510:CDS
TGTCCTGTTCTTCGAAAGAT+AGG 0.365972 3_1:+49873277 None:intergenic
ATGTCAAGAGCTTACGTATT+GGG 0.379625 3_1:+49866271 None:intergenic
ATCCATCAGAGTTGGTCTTC+GGG 0.381778 3_1:+49868706 None:intergenic
GGCCCTATCTTTCGAAGAAC+AGG 0.389030 3_1:-49873280 Msa0360510:CDS
ATTACTCTTCTTCGAAAAGA+TGG 0.392800 3_1:-49873040 Msa0360510:CDS
GATGGAAAGCTTAAAGGCTT+TGG 0.397596 3_1:-49866323 Msa0360510:CDS
CATATGCTCCTAATAATAAC+AGG 0.399835 3_1:-49866088 Msa0360510:intron
TATTAGGCACTTAAGATGAA+TGG 0.404097 3_1:-49866164 Msa0360510:intron
ATTACTCTTCTTCGAAAAGA+TGG 0.410597 3_1:-49868685 Msa0360510:CDS
TGACGTGGATACTCAAAGTT+TGG 0.414598 3_1:-49873425 Msa0360510:CDS
TCTTCGTTAACCCTATCTTT+CGG 0.418866 3_1:-49869027 Msa0360510:CDS
AATCCATCAGAGTTGGTCTT+CGG 0.430864 3_1:+49868705 None:intergenic
TGTACGTCTTGCTTCTCATA+AGG 0.432229 3_1:-49866345 Msa0360510:CDS
GTGAAGAGCAATTATATTGA+TGG 0.434863 3_1:-49868645 Msa0360510:CDS
AACGATGGTGTCCCCGGGTG+TGG 0.437378 3_1:-49873506 None:intergenic
AGAATCTTATATAGGTCAAC+AGG 0.439517 3_1:+49873466 None:intergenic
GTGACGAGCAATAATATTGA+TGG 0.440918 3_1:-49873000 Msa0360510:CDS
TGAAAAGGACTTAAGGGATA+AGG 0.447385 3_1:-49868969 Msa0360510:intron
AAATATATATACCTTGGTAT+AGG 0.452925 3_1:+49865885 None:intergenic
CATATCACTTCCCTCTTCGT+TGG 0.453367 3_1:-49873301 Msa0360510:CDS
AAGCGCTGAAAAGGACTTAA+GGG 0.454905 3_1:-49868975 Msa0360510:CDS
GACTTGATTTAGCTCGGGAG+AGG 0.463792 3_1:-49866115 Msa0360510:CDS
ACTTGTGGAAAGCGCTGAAA+AGG 0.467490 3_1:-49868984 Msa0360510:CDS
AAAGCGCTGAAAAGGACTTA+AGG 0.468986 3_1:-49868976 Msa0360510:CDS
GAACTGAAGCGTACTGGTTA+CGG 0.472216 3_1:-49873325 Msa0360510:CDS
AAAGATAGGGTTAACGAAGA+TGG 0.472513 3_1:+49869030 None:intergenic
ATTAGGCACTTAAGATGAAT+GGG 0.473468 3_1:-49866163 Msa0360510:intron
TATGTTGGGAACTTATCCTT+CGG 0.474371 3_1:-49866498 Msa0360510:CDS
GGTTACCTTGTCTTTGATGT+TGG 0.476676 3_1:-49873349 Msa0360510:CDS
TCAGAGTTGGTCTTCGGGAC+GGG 0.477721 3_1:+49868711 None:intergenic
CGCTACTCGACTTGTGAACA+TGG 0.478182 3_1:-49873254 Msa0360510:CDS
TGAGGTTGCTGCCAAACAAA+AGG 0.484062 3_1:-49867314 Msa0360510:intron
TTACTCTTCTTCGAAAAGAT+GGG 0.485859 3_1:-49868684 Msa0360510:CDS
TTACTCTTCTTCGAAAAGAT+GGG 0.494195 3_1:-49873039 Msa0360510:CDS
TGGACTGTTTACAGGCGTGC+AGG 0.495759 3_1:-49865923 Msa0360510:intron
CTTCGAAAAGATGGGGTATG+AGG 0.498568 3_1:-49873031 Msa0360510:CDS
CTGTCCGACTTGATTTAGCT+CGG 0.502487 3_1:-49866121 Msa0360510:CDS
AACCCTATCTTTCGGAGAGA+AGG 0.502877 3_1:-49869019 Msa0360510:CDS
AGTTTCTTCAAAGAAGCAAA+AGG 0.509361 3_1:-49867341 Msa0360510:CDS
CATTCACCAGAATCTTATAT+AGG 0.510974 3_1:+49873458 None:intergenic
ACTTGATTTAGCTCGGGAGA+GGG 0.513360 3_1:-49866114 Msa0360510:CDS
GTGTGAAGACATTATATGTT+GGG 0.513802 3_1:-49866512 Msa0360510:CDS
TGACCACAACCATTACTCTT+CGG 0.514416 3_1:+49869061 None:intergenic
CGTGTGAAGACATTATATGT+TGG 0.515977 3_1:-49866513 Msa0360510:CDS
TATATACCTTGGTATAGGCC+TGG 0.518085 3_1:+49865890 None:intergenic
GCGTCTCTTACGACCACACC+CGG 0.518110 3_1:+49873493 None:intergenic
TGTCCGACTTGATTTAGCTC+GGG 0.530721 3_1:-49866120 Msa0360510:CDS
CGTCTTGCTTCTCATAAGGA+TGG 0.533795 3_1:-49866341 Msa0360510:CDS
GATACTCAAAGTTTGGTGAA+TGG 0.534335 3_1:-49873418 Msa0360510:intron
GATGGGGTATGAGGAGGAGG+CGG 0.535830 3_1:-49873022 Msa0360510:CDS
GTCCCGAAGACCAACTCTGA+TGG 0.538106 3_1:-49868708 Msa0360510:CDS
TGAAGAGCAATTATATTGAT+GGG 0.547887 3_1:-49868644 Msa0360510:CDS
GAGCAATTATATTGATGGGA+AGG 0.549182 3_1:-49868640 Msa0360510:CDS
AGGAGTCGCTTCTAAACTTG+TGG 0.551270 3_1:-49868999 Msa0360510:CDS
ATCAGAGTTGGTCTTCGGGA+CGG 0.551912 3_1:+49868710 None:intergenic
AAAGATGGGGTATGAGGAGG+AGG 0.552057 3_1:-49873025 Msa0360510:CDS
CGTGCAGGATTCTATAAACC+AGG 0.552805 3_1:-49865908 Msa0360510:CDS
CTCCTTCTCTCCGAAAGATA+GGG 0.554373 3_1:+49869017 None:intergenic
AAACTTTGAGTATCCACGTC+AGG 0.555864 3_1:+49873427 None:intergenic
GATCGCCAAGACGCTATCCT+CGG 0.566309 3_1:-49869109 Msa0360510:CDS
TCTACAACGATGGTGTCCCC+GGG 0.568555 3_1:-49873511 None:intergenic
GCAAGCTGTGGAAGAAGTCG+AGG 0.568949 3_1:-49867365 Msa0360510:CDS
GTTGCAGCAGATGATCTCCT+AGG 0.569948 3_1:-49873382 Msa0360510:intron
ATCATGACGAAGAAGTTCGA+GGG 0.572521 3_1:-49868603 Msa0360510:CDS
CGAAAAGATGGGGTATGAGA+AGG 0.577206 3_1:-49868673 Msa0360510:CDS
CTTGATTTAGCTCGGGAGAG+GGG 0.578698 3_1:-49866113 Msa0360510:CDS
GTTGGTGAACTGAAGCGTAC+TGG 0.578758 3_1:-49873331 Msa0360510:CDS
ATCATGACGAAGAAGCTCAA+GGG 0.579195 3_1:-49872958 Msa0360510:CDS
GAAGAGTAATCCATCAGAGT+TGG 0.583113 3_1:+49868698 None:intergenic
AAAGATAGGGCCAACGAAGA+GGG 0.584375 3_1:+49873291 None:intergenic
GAAGAGTAATGCGTCAGTGT+TGG 0.587807 3_1:+49873053 None:intergenic
CATCATGACGAAGAAGCTCA+AGG 0.590035 3_1:-49872959 Msa0360510:CDS
TACTCTTCTTCGAAAAGATG+GGG 0.590062 3_1:-49868683 Msa0360510:CDS
TACTCTTCTTCGAAAAGATG+GGG 0.590062 3_1:-49873038 Msa0360510:CDS
CATCATGACGAAGAAGTTCG+AGG 0.591689 3_1:-49868604 Msa0360510:CDS
TGACGAGCAATAATATTGAT+GGG 0.592000 3_1:-49872999 Msa0360510:CDS
CGTAACCGAGGATAGCGTCT+TGG 0.592411 3_1:+49869104 None:intergenic
TGTTGAGTTTGCAACTGCAG+AGG 0.598820 3_1:-49866297 Msa0360510:CDS
GAAAGATAGGGCCAACGAAG+AGG 0.603202 3_1:+49873290 None:intergenic
AAAGAAGCAAAAGGTAGATG+AGG 0.604240 3_1:-49867332 Msa0360510:CDS
ATGCATTATGCGGAGACCGA+AGG 0.609027 3_1:-49868573 Msa0360510:intron
GAACCGAAGAGTAATGGTTG+TGG 0.611924 3_1:-49869064 Msa0360510:CDS
TTGACTTTGATATAGGCAAG+AGG 0.619505 3_1:-49867387 Msa0360510:intron
GTCCTGTTCTTCGAAAGATA+GGG 0.623256 3_1:+49873278 None:intergenic
GGTAACCGAGGATAATGCCT+AGG 0.623647 3_1:+49873365 None:intergenic
GTCGTTGAACCGAAGAGTAA+TGG 0.627136 3_1:-49869070 Msa0360510:CDS
CGAAAAGATGGGGTATGAGG+AGG 0.630413 3_1:-49873028 Msa0360510:CDS
CGTCTCTTACGACCACACCC+GGG 0.631420 3_1:+49873494 None:intergenic
TCATGACGAAGAAGCTCAAG+GGG 0.631475 3_1:-49872957 Msa0360510:CDS
AAAGATGGGGTATGAGAAGG+AGG 0.631960 3_1:-49868670 Msa0360510:CDS
AAAACTGCCACCCTAGTCGT+CGG 0.646571 3_1:+49865634 None:intergenic
GATCTCCTAGGCATTATCCT+CGG 0.649171 3_1:-49873370 Msa0360510:CDS
TATAGGCAAGAGGCAAGCTG+TGG 0.650683 3_1:-49867377 Msa0360510:intron
GTCTCTTACGACCACACCCG+GGG 0.653034 3_1:+49873495 None:intergenic
TGAATCTTCTGATGAAGATG+AGG 0.655782 3_1:-49867043 Msa0360510:intron
GGGGAAGCAGATGCATTATG+CGG 0.657065 3_1:-49868583 Msa0360510:CDS
CAAGGGGAAGCAGATGCATG+CGG 0.658889 3_1:-49872941 Msa0360510:CDS
CATCAAAGACAAGGTAACCG+AGG 0.661196 3_1:+49873353 None:intergenic
CAGATGCATGCGGAGAACGA+AGG 0.679641 3_1:-49872931 Msa0360510:intron
TCTCCCGAGCTAAATCAAGT+CGG 0.679997 3_1:+49866117 None:intergenic
GTTCACCAACATCAAAGACA+AGG 0.681557 3_1:+49873344 None:intergenic
TATAAACCAGGCCTATACCA+AGG 0.685036 3_1:-49865896 Msa0360510:intron
GAATGATGTCTTTCCTGACG+TGG 0.685326 3_1:-49873440 Msa0360510:CDS
TCATGACGAAGAAGTTCGAG+GGG 0.691102 3_1:-49868602 Msa0360510:CDS
CATCAAAGATGACGTAACCG+AGG 0.714623 3_1:+49869092 None:intergenic
TAAGATTCTTCAAGTCATCG+CGG 0.762237 3_1:-49869134 Msa0360510:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TATATATATATATATATATA+TGG + chr3_1:49869730-49869749 None:intergenic 0.0%
!! ATACAATGATATAAAATTAA+GGG + chr3_1:49866627-49866646 None:intergenic 10.0%
!! AATACAATGATATAAAATTA+AGG + chr3_1:49866628-49866647 None:intergenic 10.0%
!! CAAAAATGTTTAATTAAAAA+GGG + chr3_1:49866669-49866688 None:intergenic 10.0%
!! ACAAAAATGTTTAATTAAAA+AGG + chr3_1:49866670-49866689 None:intergenic 10.0%
!!! TTTATAATGTTTTAATTAAC+CGG + chr3_1:49868957-49868976 None:intergenic 10.0%
!! ATACAATGATATAAAATTAA+GGG + chr3_1:49866627-49866646 None:intergenic 10.0%
!! AATACAATGATATAAAATTA+AGG + chr3_1:49866628-49866647 None:intergenic 10.0%
!!! TTTTATATCATTGTATTTAA+TGG - chr3_1:49869435-49869454 Msa0360510:intron 10.0%
!! GAAAAATATTTAATTAAAAC+GGG + chr3_1:49869473-49869492 None:intergenic 10.0%
!! TTACAATGATATAATATAAA+GGG + chr3_1:49869652-49869671 None:intergenic 10.0%
!! ATTACAATGATATAATATAA+AGG + chr3_1:49869653-49869672 None:intergenic 10.0%
!! ATACATTGATATAAAATTAA+GGG + chr3_1:49871938-49871957 None:intergenic 10.0%
!! AATACATTGATATAAAATTA+AGG + chr3_1:49871939-49871958 None:intergenic 10.0%
!! AAATCAATGATATAAAATTA+AGG + chr3_1:49872172-49872191 None:intergenic 10.0%
!! CAAAAAAGTTTAATTAAAAA+GGG + chr3_1:49872212-49872231 None:intergenic 10.0%
!! ACAAAAAAGTTTAATTAAAA+AGG + chr3_1:49872213-49872232 None:intergenic 10.0%
!!! GAAAACAATTTTAACTTTAT+TGG - chr3_1:49866314-49866333 Msa0360510:CDS 15.0%
!!! GAATGAATAATGAAATTTTA+CGG - chr3_1:49866404-49866423 Msa0360510:intron 15.0%
!!! TTTTATATCATTGTATTTAC+TGG - chr3_1:49866631-49866650 Msa0360510:intron 15.0%
!!! AATTAAACATTTTTGTTTCA+TGG - chr3_1:49866674-49866693 Msa0360510:intron 15.0%
!!! TTGTTTGGATTTTTAATAAT+AGG - chr3_1:49868574-49868593 Msa0360510:CDS 15.0%
!! AATATATAAAAGAATAACTG+GGG + chr3_1:49868771-49868790 None:intergenic 15.0%
!! CAATATATAAAAGAATAACT+GGG + chr3_1:49868772-49868791 None:intergenic 15.0%
!! ACAATATATAAAAGAATAAC+TGG + chr3_1:49868773-49868792 None:intergenic 15.0%
!!! AATTAAATATTTTTCTGTCA+TGG - chr3_1:49869478-49869497 Msa0360510:intron 15.0%
!!! ACTACATATTATTGTTATTA+TGG + chr3_1:49869766-49869785 None:intergenic 15.0%
!! TAGTTAAAATCATATATGTT+AGG - chr3_1:49870292-49870311 Msa0360510:intron 15.0%
!!! TTTTATATCAATGTATTTAC+TGG - chr3_1:49871942-49871961 Msa0360510:intron 15.0%
!! ACAAAAATGCTTAATTAAAA+CGG + chr3_1:49871981-49872000 None:intergenic 15.0%
!!! ATTTTATATCATTGATTTAC+CGG - chr3_1:49872174-49872193 Msa0360510:intron 15.0%
!!! AATTAAACTTTTTTGTTTCA+TGG - chr3_1:49872217-49872236 Msa0360510:intron 15.0%
!! TTGAAAAAAGTAACAAATAA+TGG + chr3_1:49873145-49873164 None:intergenic 15.0%
!!! TATTTGTTACTTTTTTCAAT+AGG - chr3_1:49873146-49873165 Msa0360510:intron 15.0%
!! AATTCAAAAAATAAACAGCA+CGG + chr3_1:49866287-49866306 None:intergenic 20.0%
!! TTGTCAAGAAAAAAAAAAAC+AGG + chr3_1:49866340-49866359 None:intergenic 20.0%
!!! TTTTTTTTTTCTTGACAAGA+TGG - chr3_1:49866342-49866361 Msa0360510:CDS 20.0%
!! CTATTCATGATATTAAAGTT+TGG - chr3_1:49866478-49866497 Msa0360510:intron 20.0%
!! TAAAAAACTTCCTACAAAAT+AGG - chr3_1:49867111-49867130 Msa0360510:CDS 20.0%
!!! TTCTGATGTTGTTTTTTTAT+TGG - chr3_1:49867800-49867819 Msa0360510:intron 20.0%
!!! TCTGATGTTGTTTTTTTATT+GGG - chr3_1:49867801-49867820 Msa0360510:intron 20.0%
!! AAAAGTAGTCAAAATTAGTT+CGG - chr3_1:49867932-49867951 Msa0360510:intron 20.0%
!! TAATTAACTTAACTCATTAG+AGG - chr3_1:49868900-49868919 Msa0360510:intron 20.0%
!! AATTAACTTAACTCATTAGA+GGG - chr3_1:49868901-49868920 Msa0360510:intron 20.0%
!! TATTATATCATTGTAATTGC+TGG - chr3_1:49869656-49869675 Msa0360510:intron 20.0%
!!! TAATGTTTTTGGTTTTTTTG+TGG - chr3_1:49869813-49869832 Msa0360510:intron 20.0%
!! AAAATTATGACAGAATCAAT+CGG + chr3_1:49870220-49870239 None:intergenic 20.0%
!! TTAAAATCATATATGTTAGG+AGG - chr3_1:49870295-49870314 Msa0360510:intron 20.0%
!!! TGTGTCTTCTTTTAATTTAA+TGG - chr3_1:49870343-49870362 Msa0360510:intron 20.0%
!!! TTTTAATTTAATGGTGTGAT+TGG - chr3_1:49870352-49870371 Msa0360510:intron 20.0%
!!! GTATGAGATTTTAGTTTTAA+AGG - chr3_1:49870996-49871015 Msa0360510:intron 20.0%
!!! AGAGTTTTCAACAATAAAAT+TGG + chr3_1:49871678-49871697 None:intergenic 20.0%
!!! TATTTACTGGTTTTTTAAGA+TGG - chr3_1:49871955-49871974 Msa0360510:intron 20.0%
!!! AATTAAGCATTTTTGTATCA+TGG - chr3_1:49871985-49872004 Msa0360510:intron 20.0%
!!! TTTTGAAGTTTATTGCATAT+TGG - chr3_1:49872137-49872156 Msa0360510:intron 20.0%
!!! AAAAGGGAATTTTAAAAAAC+CGG + chr3_1:49872196-49872215 None:intergenic 20.0%
!!! CTATTACCCTTTTTAATATT+AGG - chr3_1:49872968-49872987 Msa0360510:CDS 20.0%
!! TAAGTGCCTAATATTAAAAA+GGG + chr3_1:49872977-49872996 None:intergenic 20.0%
!! TTAAGTGCCTAATATTAAAA+AGG + chr3_1:49872978-49872997 None:intergenic 20.0%
!! AGTAATTACCTGTTATTATT+AGG + chr3_1:49873071-49873090 None:intergenic 20.0%
!! GTAGTTAAAAGAAAATTTCT+TGG + chr3_1:49873098-49873117 None:intergenic 20.0%
!! GTATTAAAAACTTTACTTCA+TGG - chr3_1:49873205-49873224 Msa0360510:intron 20.0%
!! AAATATATATACCTTGGTAT+AGG + chr3_1:49873266-49873285 None:intergenic 20.0%
!! AAATATTGTTGAAAAACCAT+TGG + chr3_1:49873318-49873337 None:intergenic 20.0%
!!! AATTTAACTTGTCATTTTTC+AGG - chr3_1:49873474-49873493 Msa0360510:CDS 20.0%
!!! ATTTAACTTGTCATTTTTCA+GGG - chr3_1:49873475-49873494 Msa0360510:CDS 20.0%
!!! TGAAAAAGGTTTTGTATGTT+TGG - chr3_1:49865929-49865948 Msa0360510:intron 25.0%
!!! GAAGTTTACAACTATTTCTA+TGG + chr3_1:49866833-49866852 None:intergenic 25.0%
! GTAAACTTCTAACTATTAGT+TGG - chr3_1:49866844-49866863 Msa0360510:intron 25.0%
! TTGTTATCTCATAATACGAA+AGG + chr3_1:49866941-49866960 None:intergenic 25.0%
! CATCATTCAATAAGATTCAA+TGG + chr3_1:49867011-49867030 None:intergenic 25.0%
! ACTAATCTAACTAGAGATTA+AGG - chr3_1:49867175-49867194 Msa0360510:intron 25.0%
!! TATTTCGACTATAATGCTTT+TGG - chr3_1:49867255-49867274 Msa0360510:intron 25.0%
! ACTAAGAAGAATACTTTAAG+GGG + chr3_1:49867405-49867424 None:intergenic 25.0%
! GACTAAGAAGAATACTTTAA+GGG + chr3_1:49867406-49867425 None:intergenic 25.0%
! AGACTAAGAAGAATACTTTA+AGG + chr3_1:49867407-49867426 None:intergenic 25.0%
!!! ATTTTTTTTTACACTGAGCT+TGG - chr3_1:49867528-49867547 Msa0360510:intron 25.0%
! TTCACTTATAGATATCTTCA+TGG - chr3_1:49867636-49867655 Msa0360510:intron 25.0%
! TCGGAACATCAAATAAAATT+GGG + chr3_1:49867685-49867704 None:intergenic 25.0%
! TTCGGAACATCAAATAAAAT+TGG + chr3_1:49867686-49867705 None:intergenic 25.0%
! AGTGATTTCAAAGAAACAAA+AGG - chr3_1:49867875-49867894 Msa0360510:intron 25.0%
! ATGAAAATACAAACGAATAC+AGG + chr3_1:49868038-49868057 None:intergenic 25.0%
!! GAAATTCACTAATTTGAGTT+TGG + chr3_1:49868067-49868086 None:intergenic 25.0%
! ATCATATAATCATGTGTAAC+AGG + chr3_1:49868555-49868574 None:intergenic 25.0%
! CACATGATTATATGATTGTT+TGG - chr3_1:49868559-49868578 Msa0360510:intron 25.0%
! TATTGTTATCATCAAAACCT+TGG - chr3_1:49868787-49868806 Msa0360510:intron 25.0%
!!! CATTGTTCTAAAACTCAATT+TGG - chr3_1:49868813-49868832 Msa0360510:intron 25.0%
! GAATCAAAATTCTAATCAGA+AGG + chr3_1:49869120-49869139 None:intergenic 25.0%
!!! AAGCTGTTTCTTCTAAAATA+GGG - chr3_1:49869519-49869538 Msa0360510:intron 25.0%
! CCAAAAACATTATAGTAGAA+AGG + chr3_1:49869805-49869824 None:intergenic 25.0%
!! CCTTTCTACTATAATGTTTT+TGG - chr3_1:49869802-49869821 Msa0360510:intron 25.0%
!! TATCTTGCATAACGAATTTT+GGG + chr3_1:49869889-49869908 None:intergenic 25.0%
!! ATATCTTGCATAACGAATTT+TGG + chr3_1:49869890-49869909 None:intergenic 25.0%
!! TGATTCTGTCATAATTTTGT+TGG - chr3_1:49870222-49870241 Msa0360510:intron 25.0%
! TAACTAACAATAGCAATAAC+AGG + chr3_1:49870274-49870293 None:intergenic 25.0%
! TGAAGAGCAATTATATTGAT+GGG - chr3_1:49870504-49870523 Msa0360510:intron 25.0%
! GAAAACAATTCCAACTTTAT+TGG - chr3_1:49870673-49870692 Msa0360510:intron 25.0%
! AGTCATTCTATTTATCAGAT+AGG - chr3_1:49870742-49870761 Msa0360510:intron 25.0%
! ACCTTGATCATTAAGAAATT+TGG - chr3_1:49870897-49870916 Msa0360510:intron 25.0%
! ACCAAATTTCTTAATGATCA+AGG + chr3_1:49870901-49870920 None:intergenic 25.0%
! ATCATTAAGAAATTTGGTAG+AGG - chr3_1:49870903-49870922 Msa0360510:intron 25.0%
! TCATTAAGAAATTTGGTAGA+GGG - chr3_1:49870904-49870923 Msa0360510:intron 25.0%
!!! ACTTGTTTTCTGTGATTTTT+CGG + chr3_1:49871107-49871126 None:intergenic 25.0%
!! AAATCAGACAAGCTTTTATT+TGG - chr3_1:49871205-49871224 Msa0360510:intron 25.0%
!!! TACTTAGTTTCAAAGCATTT+TGG - chr3_1:49871239-49871258 Msa0360510:intron 25.0%
! AGCAACATTATTACATTGAT+AGG - chr3_1:49871352-49871371 Msa0360510:intron 25.0%
! TTTGAATTGATCAAATTCTC+CGG + chr3_1:49871604-49871623 None:intergenic 25.0%
! AGAACATCAGAAAAAATTTC+CGG + chr3_1:49871725-49871744 None:intergenic 25.0%
!! TTTCTGATGTTCTTGTTTAT+TGG - chr3_1:49871732-49871751 Msa0360510:intron 25.0%
!! TTCTGATGTTCTTGTTTATT+GGG - chr3_1:49871733-49871752 Msa0360510:intron 25.0%
!!! GGTTATTTTGACTTTGATAT+AGG - chr3_1:49871754-49871773 Msa0360510:intron 25.0%
! TAAAAAGGGTAATAGTCATT+TGG + chr3_1:49872963-49872982 None:intergenic 25.0%
! ATACAACATTAGAAGAAACA+GGG + chr3_1:49873189-49873208 None:intergenic 25.0%
! AATACAACATTAGAAGAAAC+AGG + chr3_1:49873190-49873209 None:intergenic 25.0%
! AGAGGAAAATATATATACCT+TGG + chr3_1:49873272-49873291 None:intergenic 25.0%
AGAATCTTATATAGGTCAAC+AGG + chr3_1:49865685-49865704 None:intergenic 30.0%
TGTTGACCTATATAAGATTC+TGG - chr3_1:49865684-49865703 Msa0360510:intron 30.0%
CATTCACCAGAATCTTATAT+AGG + chr3_1:49865693-49865712 None:intergenic 30.0%
! GTTAGTGTGTCTTCTTTTAA+TGG - chr3_1:49865988-49866007 Msa0360510:intron 30.0%
GATTGGTGTAGTCTTTAATA+TGG - chr3_1:49866014-49866033 Msa0360510:intron 30.0%
ATTACTCTTCTTCGAAAAGA+TGG - chr3_1:49866108-49866127 Msa0360510:CDS 30.0%
TTACTCTTCTTCGAAAAGAT+GGG - chr3_1:49866109-49866128 Msa0360510:CDS 30.0%
TGACGAGCAATAATATTGAT+GGG - chr3_1:49866149-49866168 Msa0360510:CDS 30.0%
!! CAAAAGGCATTTGATTGTTA+GGG - chr3_1:49866245-49866264 Msa0360510:intron 30.0%
ATACTATTGATGTGAGTGAA+AGG - chr3_1:49866429-49866448 Msa0360510:intron 30.0%
!! TTTGGTGCTTATTACATCTT+AGG - chr3_1:49866496-49866515 Msa0360510:CDS 30.0%
! TTGGTGCTTATTACATCTTA+GGG - chr3_1:49866497-49866516 Msa0360510:CDS 30.0%
!! AAGCTGTTCCTTCTAAAATA+GGG - chr3_1:49866715-49866734 Msa0360510:intron 30.0%
TCAAATCATACAACCATTAG+AGG + chr3_1:49866882-49866901 None:intergenic 30.0%
! ATATGTAATTGTCGCTTCTA+TGG - chr3_1:49866913-49866932 Msa0360510:intron 30.0%
!!! TAGGAAGTTTTTTAGAGTGA+TGG + chr3_1:49867105-49867124 None:intergenic 30.0%
! TTATGCATCTCCTATTTTGT+AGG + chr3_1:49867124-49867143 None:intergenic 30.0%
!! TGTCATCAATAGCTTTATCT+TGG - chr3_1:49867224-49867243 Msa0360510:intron 30.0%
!!! AATGCTTTTGGTTTGTTTGT+AGG - chr3_1:49867267-49867286 Msa0360510:intron 30.0%
! CATTAGTTTATGAATGCTAG+AGG + chr3_1:49867381-49867400 None:intergenic 30.0%
TAATCTATGTCGAGACATTT+AGG + chr3_1:49867487-49867506 None:intergenic 30.0%
!!! CTTGGTTGGTTTTAATTGAT+CGG - chr3_1:49867546-49867565 Msa0360510:intron 30.0%
GGAACATCAAATAAAATTGG+GGG + chr3_1:49867683-49867702 None:intergenic 30.0%
CGGAACATCAAATAAAATTG+GGG + chr3_1:49867684-49867703 None:intergenic 30.0%
TAGCACATGTTAATCAACTT+CGG + chr3_1:49867704-49867723 None:intergenic 30.0%
! AAGTTGATTAACATGTGCTA+TGG - chr3_1:49867704-49867723 Msa0360510:intron 30.0%
ATGGTTATAGAGTTGTTGAT+TGG - chr3_1:49867723-49867742 Msa0360510:intron 30.0%
!! GATTGGTCGAATTGATTTTA+TGG - chr3_1:49867740-49867759 Msa0360510:intron 30.0%
!!! GGTTATTTTGACCTTGATAT+AGG - chr3_1:49867822-49867841 Msa0360510:intron 30.0%
CTACCACATTAAATTCATGA+CGG + chr3_1:49868013-49868032 None:intergenic 30.0%
!!! ATTTCCCCATTTTGATTTTG+AGG - chr3_1:49868082-49868101 Msa0360510:intron 30.0%
!!! TTTCCCCATTTTGATTTTGA+GGG - chr3_1:49868083-49868102 Msa0360510:intron 30.0%
AGTATAGCGAGAATAAACTA+GGG - chr3_1:49868116-49868135 Msa0360510:intron 30.0%
!! AACTGGAGAGAGTATTTATA+AGG + chr3_1:49868172-49868191 None:intergenic 30.0%
TCTTTGCAGACATTATATGT+TGG - chr3_1:49868218-49868237 Msa0360510:intron 30.0%
CTTTGCAGACATTATATGTT+GGG - chr3_1:49868219-49868238 Msa0360510:intron 30.0%
GTAAAATTCTTCCAACATTG+TGG - chr3_1:49868352-49868371 Msa0360510:intron 30.0%
ACTCTTATTGTTTGTTTCCA+AGG - chr3_1:49868511-49868530 Msa0360510:intron 30.0%
!! TATCCTCTTTTTAAGAGTCT+TGG - chr3_1:49868683-49868702 Msa0360510:CDS 30.0%
! GTGATTTTATTATCCCCTTT+CGG - chr3_1:49868716-49868735 Msa0360510:CDS 30.0%
! TAGTTTGTCATCATCAAAGA+GGG + chr3_1:49868852-49868871 None:intergenic 30.0%
!! TTAGTTTGTCATCATCAAAG+AGG + chr3_1:49868853-49868872 None:intergenic 30.0%
! AATTAACCGGTTTAGACTTA+GGG + chr3_1:49868944-49868963 None:intergenic 30.0%
! TAATTAACCGGTTTAGACTT+AGG + chr3_1:49868945-49868964 None:intergenic 30.0%
!! TTGATTCTGAAGTTCTTCTT+AGG - chr3_1:49869133-49869152 Msa0360510:intron 30.0%
!! TGATTCTGAAGTTCTTCTTA+GGG - chr3_1:49869134-49869153 Msa0360510:intron 30.0%
GGCAAAGAGAATTTAAGAAT+TGG - chr3_1:49869222-49869241 Msa0360510:intron 30.0%
TATCAGATTCAGGAAGATAT+AGG + chr3_1:49869321-49869340 None:intergenic 30.0%
TTAGGTAGAAGTTTGACATT+TGG - chr3_1:49869355-49869374 Msa0360510:intron 30.0%
TTTGACATTTGGAAATCCAT+AGG - chr3_1:49869366-49869385 Msa0360510:intron 30.0%
!! GAAGCTGTTTCTTCTAAAAT+AGG - chr3_1:49869518-49869537 Msa0360510:intron 30.0%
!! TCATTTTGTTTCATCTAGTG+AGG - chr3_1:49869568-49869587 Msa0360510:intron 30.0%
TCAAATCATACAACCATTAG+AGG + chr3_1:49866882-49866901 None:intergenic 30.0%
!! CTGTCATAATTTTGTTGGTT+TGG - chr3_1:49870227-49870246 Msa0360510:intron 30.0%
ATTACTCTTCTTCGAAAAGA+TGG - chr3_1:49866108-49866127 Msa0360510:CDS 30.0%
TTACTCTTCTTCGAAAAGAT+GGG - chr3_1:49866109-49866128 Msa0360510:CDS 30.0%
GTGAAGAGCAATTATATTGA+TGG - chr3_1:49870503-49870522 Msa0360510:intron 30.0%
ATCAAACTAGCCAATAAAGT+TGG + chr3_1:49870686-49870705 None:intergenic 30.0%
AGAAAAGTTTCCTATAGTTG+AGG - chr3_1:49870718-49870737 Msa0360510:intron 30.0%
! GCTAAAATGCTTGTCTTTTT+GGG + chr3_1:49870789-49870808 None:intergenic 30.0%
! TGCTAAAATGCTTGTCTTTT+TGG + chr3_1:49870790-49870809 None:intergenic 30.0%
AATCCAAGTAAAACGTGAAA+AGG - chr3_1:49871022-49871041 Msa0360510:intron 30.0%
TAACCACATGACAATTCAAT+AGG - chr3_1:49871073-49871092 Msa0360510:intron 30.0%
! TTGTTTTCTGTGATTTTTCG+GGG + chr3_1:49871105-49871124 None:intergenic 30.0%
!! CTTGTTTTCTGTGATTTTTC+GGG + chr3_1:49871106-49871125 None:intergenic 30.0%
CGAAACTGTAAACTAGAAAA+CGG - chr3_1:49871377-49871396 Msa0360510:intron 30.0%
GAAACTGTAAACTAGAAAAC+GGG - chr3_1:49871378-49871397 Msa0360510:intron 30.0%
! AGGATATAAAGATTTTGTCG+TGG + chr3_1:49871635-49871654 None:intergenic 30.0%
CAACAATAAAATTGGAGAAG+TGG + chr3_1:49871670-49871689 None:intergenic 30.0%
AGTTTCTTCAAAGAAGCAAA+AGG - chr3_1:49871807-49871826 Msa0360510:intron 30.0%
! TACCTTCAAAACCTTTTGTT+TGG + chr3_1:49871848-49871867 None:intergenic 30.0%
AAAGTTGTTCCATCCAAAAA+TGG - chr3_1:49872025-49872044 Msa0360510:intron 30.0%
AAGTTGTTCCATCCAAAAAT+GGG - chr3_1:49872026-49872045 Msa0360510:intron 30.0%
TAAAGATCGTCTTTCTTTAC+AGG + chr3_1:49872058-49872077 None:intergenic 30.0%
AGAGTTAGAAGGTTACAATA+TGG + chr3_1:49872373-49872392 None:intergenic 30.0%
TATTGTAACCTTCTAACTCT+TGG - chr3_1:49872373-49872392 Msa0360510:intron 30.0%
GGACATATATTGAAATGTTG+AGG + chr3_1:49872415-49872434 None:intergenic 30.0%
GTGTGAAGACATTATATGTT+GGG - chr3_1:49872636-49872655 Msa0360510:intron 30.0%
TTTACTCATCATGTGATTCT+TGG - chr3_1:49872699-49872718 Msa0360510:intron 30.0%
GAAAAATTCTTCCAAGATTG+TGG - chr3_1:49872768-49872787 Msa0360510:intron 30.0%
!! CAATTACTTTTCCACAATCT+TGG + chr3_1:49872782-49872801 None:intergenic 30.0%
! TTGACATCTTTTCAACTTTG+TGG - chr3_1:49872893-49872912 Msa0360510:intron 30.0%
TATTAGGCACTTAAGATGAA+TGG - chr3_1:49872984-49873003 Msa0360510:CDS 30.0%
ATTAGGCACTTAAGATGAAT+GGG - chr3_1:49872985-49873004 Msa0360510:CDS 30.0%
CATATGCTCCTAATAATAAC+AGG - chr3_1:49873060-49873079 Msa0360510:CDS 30.0%
TGAACAACTTCTTGATGAAT+AGG - chr3_1:49873340-49873359 Msa0360510:CDS 30.0%
GAACAACTTCTTGATGAATA+GGG - chr3_1:49873341-49873360 Msa0360510:CDS 30.0%
! GATACTCAAAGTTTGGTGAA+TGG - chr3_1:49865730-49865749 Msa0360510:intron 35.0%
! TCTTCTTTTAATGGCACGAT+TGG - chr3_1:49865997-49866016 Msa0360510:intron 35.0%
TACTCTTCTTCGAAAAGATG+GGG - chr3_1:49866110-49866129 Msa0360510:CDS 35.0%
GTGACGAGCAATAATATTGA+TGG - chr3_1:49866148-49866167 Msa0360510:CDS 35.0%
! CCTAACAATCAAATGCCTTT+TGG + chr3_1:49866247-49866266 None:intergenic 35.0%
!! CCAAAAGGCATTTGATTGTT+AGG - chr3_1:49866244-49866263 Msa0360510:intron 35.0%
AAAAAATAAACAGCACGGAG+GGG + chr3_1:49866282-49866301 None:intergenic 35.0%
CAAAAAATAAACAGCACGGA+GGG + chr3_1:49866283-49866302 None:intergenic 35.0%
TCAAAAAATAAACAGCACGG+AGG + chr3_1:49866284-49866303 None:intergenic 35.0%
!! AGCTGAAGGTATTACATCTT+AGG - chr3_1:49866542-49866561 Msa0360510:CDS 35.0%
!! GCTGAAGGTATTACATCTTA+GGG - chr3_1:49866543-49866562 Msa0360510:CDS 35.0%
TCTAATACCTCATCTTCATC+AGG + chr3_1:49866574-49866593 None:intergenic 35.0%
!! GAAGCTGTTCCTTCTAAAAT+AGG - chr3_1:49866714-49866733 Msa0360510:intron 35.0%
AGAACTATCAGCTTTCTTTG+CGG + chr3_1:49866748-49866767 None:intergenic 35.0%
ATTTCTATGGCTGCTATGAA+AGG + chr3_1:49866820-49866839 None:intergenic 35.0%
! GTGTTTTGTGATACCTCTAA+TGG - chr3_1:49866866-49866885 Msa0360510:intron 35.0%
TTGCTTAAGCAGAACAGTAA+AGG + chr3_1:49867347-49867366 None:intergenic 35.0%
! GACATTTAGGATGAGAGAAA+AGG + chr3_1:49867474-49867493 None:intergenic 35.0%
!!! TTTTTTACACTGAGCTTGGT+TGG - chr3_1:49867532-49867551 Msa0360510:intron 35.0%
GATATCTTCATGGTCTAATG+TGG - chr3_1:49867646-49867665 Msa0360510:intron 35.0%
GAAACAAAAGGTAGATGATG+AGG - chr3_1:49867887-49867906 Msa0360510:intron 35.0%
AGAATCCTTTGATGAATCTG+AGG - chr3_1:49867956-49867975 Msa0360510:intron 35.0%
ATGCCGTCATGAATTTAATG+TGG - chr3_1:49868007-49868026 Msa0360510:intron 35.0%
!!! TTCCCCATTTTGATTTTGAG+GGG - chr3_1:49868084-49868103 Msa0360510:intron 35.0%
ATCCCCCTCAAAATCAAAAT+GGG + chr3_1:49868090-49868109 None:intergenic 35.0%
AATCCCCCTCAAAATCAAAA+TGG + chr3_1:49868091-49868110 None:intergenic 35.0%
CAGTATAGCGAGAATAAACT+AGG - chr3_1:49868115-49868134 Msa0360510:intron 35.0%
! GGTTGGTTGATTAGTTAGTT+AGG - chr3_1:49868137-49868156 Msa0360510:intron 35.0%
TTTCTCACTCATGTGATTCT+TGG - chr3_1:49868283-49868302 Msa0360510:intron 35.0%
! TCGACATCTTTTCAACTTTG+TGG - chr3_1:49868477-49868496 Msa0360510:intron 35.0%
TAGGCACTTAAGATGATGAA+TGG - chr3_1:49868593-49868612 Msa0360510:CDS 35.0%
AGGCACTTAAGATGATGAAT+GGG - chr3_1:49868594-49868613 Msa0360510:CDS 35.0%
TTAAAAAGAGGATATCCACG+AGG + chr3_1:49868677-49868696 None:intergenic 35.0%
TCTCCAAGACTCTTAAAAAG+AGG + chr3_1:49868689-49868708 None:intergenic 35.0%
TTTAAGAGTCTTGGAGAAGA+TGG - chr3_1:49868692-49868711 Msa0360510:CDS 35.0%
TTAAGAGTCTTGGAGAAGAT+GGG - chr3_1:49868693-49868712 Msa0360510:CDS 35.0%
!!! GTTTTAGAACAATGTCTCCA+AGG + chr3_1:49868807-49868826 None:intergenic 35.0%
GCAGTTAAATTCAGATTCTG+TGG - chr3_1:49869042-49869061 Msa0360510:CDS 35.0%
!! GATTCTGAAGTTCTTCTTAG+GGG - chr3_1:49869135-49869154 Msa0360510:intron 35.0%
! ATGAAGCATTCATGTGTTCT+TGG - chr3_1:49869201-49869220 Msa0360510:intron 35.0%
! CATTTCCTTTGTAGTTTGTG+TGG + chr3_1:49869252-49869271 None:intergenic 35.0%
TTCAGGAAGATATAGGAGAT+TGG + chr3_1:49869314-49869333 None:intergenic 35.0%
TATCTTCCTGAATCTGATAG+AGG - chr3_1:49869322-49869341 Msa0360510:intron 35.0%
TCAAACTTCTACCTAATCAG+GGG + chr3_1:49869351-49869370 None:intergenic 35.0%
GTCAAACTTCTACCTAATCA+GGG + chr3_1:49869352-49869371 None:intergenic 35.0%
TGTCAAACTTCTACCTAATC+AGG + chr3_1:49869353-49869372 None:intergenic 35.0%
!! AAATCCATAGGAGTATCAAC+TGG - chr3_1:49869378-49869397 Msa0360510:intron 35.0%
! TGAATATCCGCTTTCTTTTC+AGG + chr3_1:49869551-49869570 None:intergenic 35.0%
! CGACATATTTAAGATTCTCG+TGG - chr3_1:49869948-49869967 Msa0360510:intron 35.0%
GATCTTGAAAGTTTGGAGAA+TGG - chr3_1:49869991-49870010 Msa0360510:intron 35.0%
TAAGATTCTTCAAGTCATCG+CGG - chr3_1:49870014-49870033 Msa0360510:intron 35.0%
AAAGATAGGGTTAACGAAGA+TGG + chr3_1:49870121-49870140 None:intergenic 35.0%
TCTTCGTTAACCCTATCTTT+CGG - chr3_1:49870121-49870140 Msa0360510:intron 35.0%
TGAAAAGGACTTAAGGGATA+AGG - chr3_1:49870179-49870198 Msa0360510:intron 35.0%
GATTGGTGTAGTCTGTAATA+TGG - chr3_1:49870369-49870388 Msa0360510:intron 35.0%
TACTCTTCTTCGAAAAGATG+GGG - chr3_1:49866110-49866129 Msa0360510:CDS 35.0%
GAGCAATTATATTGATGGGA+AGG - chr3_1:49870508-49870527 Msa0360510:intron 35.0%
CCTCACACACATCATAAAAA+TGG + chr3_1:49870871-49870890 None:intergenic 35.0%
!! CCATTTTTATGATGTGTGTG+AGG - chr3_1:49870868-49870887 Msa0360510:intron 35.0%
ATTAAAGTTGCCCAATCTGA+TGG + chr3_1:49870943-49870962 None:intergenic 35.0%
! ATGCCTTTTCACGTTTTACT+TGG + chr3_1:49871028-49871047 None:intergenic 35.0%
AATCACAGAAAACAAGTTCG+AGG - chr3_1:49871110-49871129 Msa0360510:intron 35.0%
ATCACAGAAAACAAGTTCGA+GGG - chr3_1:49871111-49871130 Msa0360510:intron 35.0%
!!! TTTTGGAGTACGTCATAATG+AGG - chr3_1:49871256-49871275 Msa0360510:intron 35.0%
GATTGCCATATGCTATACAA+AGG - chr3_1:49871293-49871312 Msa0360510:intron 35.0%
GTTCACCTTTGTATAGCATA+TGG + chr3_1:49871301-49871320 None:intergenic 35.0%
GTGAACAAGAGTTGTTTGTA+GGG - chr3_1:49871315-49871334 Msa0360510:intron 35.0%
!! TGTTTGTTGTTTGCTTAGAG+AGG + chr3_1:49871519-49871538 None:intergenic 35.0%
! TAAAGATTTTGTCGTGGAGA+TGG + chr3_1:49871629-49871648 None:intergenic 35.0%
TTGACTTTGATATAGGCAAG+AGG - chr3_1:49871761-49871780 Msa0360510:intron 35.0%
AAAGAAGCAAAAGGTAGATG+AGG - chr3_1:49871816-49871835 Msa0360510:intron 35.0%
!! TGCCAAACAAAAGGTTTTGA+AGG - chr3_1:49871843-49871862 Msa0360510:intron 35.0%
! ATGGAACAACTTTTGTTGCA+GGG + chr3_1:49872018-49872037 None:intergenic 35.0%
! TCATCTTCTGAAGAATCTTC+TGG - chr3_1:49872082-49872101 Msa0360510:intron 35.0%
TGAATCTTCTGATGAAGATG+AGG - chr3_1:49872105-49872124 Msa0360510:intron 35.0%
GAAGTTGTTCCTTCCAAAAT+AGG - chr3_1:49872257-49872276 Msa0360510:intron 35.0%
TACAATATGGCTGATATGGA+AGG + chr3_1:49872360-49872379 None:intergenic 35.0%
AGGTTACAATATGGCTGATA+TGG + chr3_1:49872364-49872383 None:intergenic 35.0%
ATATGTCCTACATTCATTCG+TGG - chr3_1:49872427-49872446 Msa0360510:intron 35.0%
TATGTCCTACATTCATTCGT+GGG - chr3_1:49872428-49872447 Msa0360510:intron 35.0%
ATATGGTCTTCAACCCATTA+GGG + chr3_1:49872457-49872476 None:intergenic 35.0%
!! GATATGCCTTATTTGCAAGA+TGG + chr3_1:49872491-49872510 None:intergenic 35.0%
AGAAGTTGCAATCACGTTAA+GGG + chr3_1:49872542-49872561 None:intergenic 35.0%
AAGAAGTTGCAATCACGTTA+AGG + chr3_1:49872543-49872562 None:intergenic 35.0%
!!! TTTTGTGTAGCAGGAGTATT+AGG + chr3_1:49872605-49872624 None:intergenic 35.0%
CGTGTGAAGACATTATATGT+TGG - chr3_1:49872635-49872654 Msa0360510:intron 35.0%
TATGTTGGGAACTTATCCTT+CGG - chr3_1:49868233-49868252 Msa0360510:intron 35.0%
CATAAGGATGGAAAGCTTAA+AGG - chr3_1:49872819-49872838 Msa0360510:intron 35.0%
ATGTCAAGAGCTTACGTATT+GGG + chr3_1:49872880-49872899 None:intergenic 35.0%
TAATGGAATCGAAACAAGTG+AGG + chr3_1:49873128-49873147 None:intergenic 35.0%
! TTACTTCATGGACTGTTTAC+AGG - chr3_1:49873217-49873236 Msa0360510:intron 35.0%
CATAGTACAACAGCAAAAAG+AGG + chr3_1:49873290-49873309 None:intergenic 35.0%
AAACTTTGAGTATCCACGTC+AGG + chr3_1:49865724-49865743 None:intergenic 40.0%
TGACGTGGATACTCAAAGTT+TGG - chr3_1:49865723-49865742 Msa0360510:intron 40.0%
GGTTACCTTGTCTTTGATGT+TGG - chr3_1:49865799-49865818 Msa0360510:intron 40.0%
GTTCACCAACATCAAAGACA+AGG + chr3_1:49865807-49865826 None:intergenic 40.0%
GTCCTGTTCTTCGAAAGATA+GGG + chr3_1:49865873-49865892 None:intergenic 40.0%
TGTCCTGTTCTTCGAAAGAT+AGG + chr3_1:49865874-49865893 None:intergenic 40.0%
ACTTGTGAACATGGCTGAAA+TGG - chr3_1:49865903-49865922 Msa0360510:CDS 40.0%
! GGCTGAAATGGACTTGAAAA+AGG - chr3_1:49865915-49865934 Msa0360510:intron 40.0%
ATCATGACGAAGAAGCTCAA+GGG - chr3_1:49866190-49866209 Msa0360510:intron 40.0%
GAGAACGAAGGTAATCCAAA+AGG - chr3_1:49866229-49866248 Msa0360510:intron 40.0%
AAAAATAAACAGCACGGAGG+GGG + chr3_1:49866281-49866300 None:intergenic 40.0%
TGTAATACCTTCAGCTCATG+AGG + chr3_1:49866538-49866557 None:intergenic 40.0%
!! GGTGCATTCCCTATTTTAGA+AGG + chr3_1:49866726-49866745 None:intergenic 40.0%
GAACTATCAGCTTTCTTTGC+GGG + chr3_1:49866747-49866766 None:intergenic 40.0%
! TGAATCTTCTGATGACGATG+AGG - chr3_1:49866782-49866801 Msa0360510:intron 40.0%
TTCACAGGAGAAACAACAAC+AGG + chr3_1:49867304-49867323 None:intergenic 40.0%
TTGACCTTGATATAGGCAAG+AGG - chr3_1:49867829-49867848 Msa0360510:intron 40.0%
TGAGGTTGCTGCTAAACAAA+AGG - chr3_1:49867905-49867924 Msa0360510:intron 40.0%
CACATCCTCAGATTCATCAA+AGG + chr3_1:49867964-49867983 None:intergenic 40.0%
CTTTGATGAATCTGAGGATG+TGG - chr3_1:49867962-49867981 Msa0360510:intron 40.0%
!!! TCCCCATTTTGATTTTGAGG+GGG - chr3_1:49868085-49868104 Msa0360510:intron 40.0%
TCCCCCTCAAAATCAAAATG+GGG + chr3_1:49868089-49868108 None:intergenic 40.0%
TAGCGAGAATAAACTAGGGT+TGG - chr3_1:49868120-49868139 Msa0360510:intron 40.0%
GTCAGATTCTTTCACACTGA+AGG + chr3_1:49868252-49868271 None:intergenic 40.0%
ATTCTTCCAACATTGTGGAG+AGG - chr3_1:49868357-49868376 Msa0360510:intron 40.0%
GAGGTTGTTGATGTATGTCT+TGG - chr3_1:49868376-49868395 Msa0360510:intron 40.0%
GTTGATGTATGTCTTGGTAC+TGG - chr3_1:49868382-49868401 Msa0360510:intron 40.0%
! TGTCTTGGTACTGGAAAGAA+AGG - chr3_1:49868391-49868410 Msa0360510:intron 40.0%
GGAAAGAAAGGAAAGCTACT+AGG - chr3_1:49868403-49868422 Msa0360510:intron 40.0%
! GTTTCCAAGGCATTTGTTTC+TGG - chr3_1:49868524-49868543 Msa0360510:intron 40.0%
GAATCCAGAAACAAATGCCT+TGG + chr3_1:49868531-49868550 None:intergenic 40.0%
TAAGAGTCTTGGAGAAGATG+GGG - chr3_1:49868694-49868713 Msa0360510:CDS 40.0%
GCTTACCACACAAACTACAA+AGG - chr3_1:49869244-49869263 Msa0360510:intron 40.0%
GGAAGATATAGGAGATTGGT+TGG + chr3_1:49869310-49869329 None:intergenic 40.0%
CAAACTTCTACCTAATCAGG+GGG + chr3_1:49869350-49869369 None:intergenic 40.0%
AAGAAACAGCTTCTGCTTCA+GGG + chr3_1:49869511-49869530 None:intergenic 40.0%
GGAATCTTCTGATGAAGATG+AGG - chr3_1:49869589-49869608 Msa0360510:intron 40.0%
!! CCATTAGAGGTATCACTAGA+TGG + chr3_1:49869692-49869711 None:intergenic 40.0%
CCATCTAGTGATACCTCTAA+TGG - chr3_1:49869689-49869708 Msa0360510:intron 40.0%
TTATGCAAGATATGTGTCCC+CGG - chr3_1:49869897-49869916 Msa0360510:intron 40.0%
AAACTTTCAAGATCCACGTC+AGG + chr3_1:49869985-49870004 None:intergenic 40.0%
TGACGTGGATCTTGAAAGTT+TGG - chr3_1:49869984-49870003 Msa0360510:intron 40.0%
TGACCACAACCATTACTCTT+CGG + chr3_1:49870090-49870109 None:intergenic 40.0%
!! AAAGCGCTGAAAAGGACTTA+AGG - chr3_1:49870172-49870191 Msa0360510:intron 40.0%
!! AAGCGCTGAAAAGGACTTAA+GGG - chr3_1:49870173-49870192 Msa0360510:intron 40.0%
CTTGCTACTAACACAGTAAC+AGG + chr3_1:49870397-49870416 None:intergenic 40.0%
CTGTTACTGTGTTAGTAGCA+AGG - chr3_1:49870395-49870414 Msa0360510:intron 40.0%
!! AATCCATCAGAGTTGGTCTT+CGG + chr3_1:49870446-49870465 None:intergenic 40.0%
GAAGAGTAATCCATCAGAGT+TGG + chr3_1:49870453-49870472 None:intergenic 40.0%
ATCATGACGAAGAAGTTCGA+GGG - chr3_1:49870545-49870564 Msa0360510:intron 40.0%
! AGTGCCTTTTGCATTACCTT+CGG + chr3_1:49870594-49870613 None:intergenic 40.0%
AGAATGACTGCCTCAACTAT+AGG + chr3_1:49870731-49870750 None:intergenic 40.0%
!! AAGACAAGCATTTTAGCACG+AGG - chr3_1:49870792-49870811 Msa0360510:intron 40.0%
!! ATTTTAGCACGAGGAAGCAA+AGG - chr3_1:49870801-49870820 Msa0360510:intron 40.0%
CATAGGCACATTGTTGAAAC+TGG + chr3_1:49870832-49870851 None:intergenic 40.0%
TGCCTATGCATTCTTTCAAC+TGG - chr3_1:49870844-49870863 Msa0360510:intron 40.0%
GACCAGTTGAAAGAATGCAT+AGG + chr3_1:49870849-49870868 None:intergenic 40.0%
ACAATTCACCACCATCAGAT+TGG - chr3_1:49870929-49870948 Msa0360510:intron 40.0%
CAATTCACCACCATCAGATT+GGG - chr3_1:49870930-49870949 Msa0360510:intron 40.0%
GCACCTATTGAATTGTCATG+TGG + chr3_1:49871079-49871098 None:intergenic 40.0%
CATGACAATTCAATAGGTGC+AGG - chr3_1:49871079-49871098 Msa0360510:intron 40.0%
TCACAGAAAACAAGTTCGAG+GGG - chr3_1:49871112-49871131 Msa0360510:intron 40.0%
ACAGTAGTAGAGTCAGATGA+GGG - chr3_1:49871145-49871164 Msa0360510:intron 40.0%
GTTGTCTTGGTTAAACCCAT+AGG + chr3_1:49871174-49871193 None:intergenic 40.0%
TTTCGCTCTTCATGTTGTCT+TGG + chr3_1:49871187-49871206 None:intergenic 40.0%
GGTGAACAAGAGTTGTTTGT+AGG - chr3_1:49871314-49871333 Msa0360510:intron 40.0%
!!! TTTTGTTTTGCTGCTGCAGA+GGG + chr3_1:49871433-49871452 None:intergenic 40.0%
! TGAATGGCATTGGAATCCAA+AGG + chr3_1:49871568-49871587 None:intergenic 40.0%
GTCTGTTCTATGAATGGCAT+TGG + chr3_1:49871578-49871597 None:intergenic 40.0%
CATTCATAGAACAGACAAGC+CGG - chr3_1:49871582-49871601 Msa0360510:intron 40.0%
GGTAGTCAAAATTAGTTCGC+AGG - chr3_1:49871864-49871883 Msa0360510:intron 40.0%
GGAATCCTTTCATGAATCTG+AGG - chr3_1:49871885-49871904 Msa0360510:intron 40.0%
CACATCCTCAGATTCATGAA+AGG + chr3_1:49871893-49871912 None:intergenic 40.0%
CTTTCATGAATCTGAGGATG+TGG - chr3_1:49871891-49871910 Msa0360510:intron 40.0%
! GATGGAACAACTTTTGTTGC+AGG + chr3_1:49872019-49872038 None:intergenic 40.0%
AGAACTATCAGCCTTCTTTG+CGG + chr3_1:49872291-49872310 None:intergenic 40.0%
CAGAAGATTCGTCAGATTCT+TGG + chr3_1:49872316-49872335 None:intergenic 40.0%
CAAGAATCTGACGAATCTTC+TGG - chr3_1:49872314-49872333 Msa0360510:intron 40.0%
GTAACCTTCTAACTCTTGGT+TGG - chr3_1:49872377-49872396 Msa0360510:intron 40.0%
AACACCAACCAAGAGTTAGA+AGG + chr3_1:49872384-49872403 None:intergenic 40.0%
TATGGTCTTCAACCCATTAG+GGG + chr3_1:49872456-49872475 None:intergenic 40.0%
GATATGGTCTTCAACCCATT+AGG + chr3_1:49872458-49872477 None:intergenic 40.0%
AGATGGAAGACCTGTTGATA+TGG + chr3_1:49872474-49872493 None:intergenic 40.0%
GGTCTTCCATCTTGCAAATA+AGG - chr3_1:49872482-49872501 Msa0360510:intron 40.0%
! CTGTTCACATTTTGTGTAGC+AGG + chr3_1:49872614-49872633 None:intergenic 40.0%
TGTACGTCTTGCTTCTCATA+AGG - chr3_1:49872803-49872822 Msa0360510:intron 40.0%
GATGGAAAGCTTAAAGGCTT+TGG - chr3_1:49872825-49872844 Msa0360510:intron 40.0%
GATGTCAAGAGCTTACGTAT+TGG + chr3_1:49872881-49872900 None:intergenic 40.0%
ACTCTTGTCTATTGTGTCGA+AGG - chr3_1:49872927-49872946 Msa0360510:intron 40.0%
TATAAACCAGGCCTATACCA+AGG - chr3_1:49873252-49873271 Msa0360510:CDS 40.0%
TATATACCTTGGTATAGGCC+TGG + chr3_1:49873261-49873280 None:intergenic 40.0%
GTTGTACTATGTTCTGCCAA+TGG - chr3_1:49873299-49873318 Msa0360510:CDS 40.0%
! ATACATTGTTGCTTCAAGCG+TGG - chr3_1:49873435-49873454 Msa0360510:CDS 40.0%
GAATGATGTCTTTCCTGACG+TGG - chr3_1:49865708-49865727 Msa0360510:intron 45.0%
GATCTCCTAGGCATTATCCT+CGG - chr3_1:49865778-49865797 Msa0360510:intron 45.0%
CATCAAAGACAAGGTAACCG+AGG + chr3_1:49865798-49865817 None:intergenic 45.0%
!! GAACTGAAGCGTACTGGTTA+CGG - chr3_1:49865823-49865842 Msa0360510:intron 45.0%
CATATCACTTCCCTCTTCGT+TGG - chr3_1:49865847-49865866 Msa0360510:intron 45.0%
AAAGATAGGGCCAACGAAGA+GGG + chr3_1:49865860-49865879 None:intergenic 45.0%
CTGTACCTGTGTTTGTAGCA+AGG - chr3_1:49866040-49866059 Msa0360510:intron 45.0%
!! ATGCGTCAGTGTTGGTCTTT+GGG + chr3_1:49866090-49866109 None:intergenic 45.0%
!! AATGCGTCAGTGTTGGTCTT+TGG + chr3_1:49866091-49866110 None:intergenic 45.0%
GAAGAGTAATGCGTCAGTGT+TGG + chr3_1:49866098-49866117 None:intergenic 45.0%
CTTCGAAAAGATGGGGTATG+AGG - chr3_1:49866117-49866136 Msa0360510:CDS 45.0%
CATCATGACGAAGAAGCTCA+AGG - chr3_1:49866189-49866208 Msa0360510:intron 45.0%
TCATGACGAAGAAGCTCAAG+GGG - chr3_1:49866191-49866210 Msa0360510:intron 45.0%
AAAATAAACAGCACGGAGGG+GGG + chr3_1:49866280-49866299 None:intergenic 45.0%
!! GTTGTTTCTCCTGTGAAGTC+TGG - chr3_1:49867307-49867326 Msa0360510:intron 45.0%
CCATTCATTCCAGACTTCAC+AGG + chr3_1:49867319-49867338 None:intergenic 45.0%
! CCTGTGAAGTCTGGAATGAA+TGG - chr3_1:49867316-49867335 Msa0360510:CDS 45.0%
CTTGCCTCTTGCCTATATCA+AGG + chr3_1:49867836-49867855 None:intergenic 45.0%
GCAAGCTGAGGAAGAAGTAA+AGG - chr3_1:49867851-49867870 Msa0360510:intron 45.0%
AGTGATCAGCTACGAACAAC+TGG + chr3_1:49868189-49868208 None:intergenic 45.0%
CAACAACCTCTCCACAATGT+TGG + chr3_1:49868366-49868385 None:intergenic 45.0%
TGTTGAGTTTGCAACTGCAG+AGG - chr3_1:49868435-49868454 Msa0360510:intron 45.0%
AGAGGATATCCACGAGGAAA+TGG + chr3_1:49868671-49868690 None:intergenic 45.0%
TCATTGTGCATGAGCCGAAA+GGG + chr3_1:49868733-49868752 None:intergenic 45.0%
ATCATTGTGCATGAGCCGAA+AGG + chr3_1:49868734-49868753 None:intergenic 45.0%
AGCTCACCCTAAGTCTAAAC+CGG - chr3_1:49868935-49868954 Msa0360510:intron 45.0%
! CAAGCCAGTTGATACTCCTA+TGG + chr3_1:49869385-49869404 None:intergenic 45.0%
GAAGAAACAGCTTCTGCTTC+AGG + chr3_1:49869512-49869531 None:intergenic 45.0%
GAGTGCACCTGAAAAGAAAG+CGG - chr3_1:49869541-49869560 Msa0360510:intron 45.0%
!! GTTGTTTCTCCTGTGAAGTC+TGG - chr3_1:49867307-49867326 Msa0360510:intron 45.0%
GTTTCTTAAGACCACATCCG+GGG + chr3_1:49869917-49869936 None:intergenic 45.0%
CGTTTCTTAAGACCACATCC+GGG + chr3_1:49869918-49869937 None:intergenic 45.0%
GCGTTTCTTAAGACCACATC+CGG + chr3_1:49869919-49869938 None:intergenic 45.0%
GGATTATCTCTTACCTGACG+TGG - chr3_1:49869969-49869988 Msa0360510:intron 45.0%
CATCAAAGATGACGTAACCG+AGG + chr3_1:49870059-49870078 None:intergenic 45.0%
GTCGTTGAACCGAAGAGTAA+TGG - chr3_1:49870078-49870097 Msa0360510:intron 45.0%
GAACCGAAGAGTAATGGTTG+TGG - chr3_1:49870084-49870103 Msa0360510:intron 45.0%
AACCCTATCTTTCGGAGAGA+AGG - chr3_1:49870129-49870148 Msa0360510:intron 45.0%
CTCCTTCTCTCCGAAAGATA+GGG + chr3_1:49870134-49870153 None:intergenic 45.0%
ACTCCTTCTCTCCGAAAGAT+AGG + chr3_1:49870135-49870154 None:intergenic 45.0%
AGGAGTCGCTTCTAAACTTG+TGG - chr3_1:49870149-49870168 Msa0360510:intron 45.0%
!! ACTTGTGGAAAGCGCTGAAA+AGG - chr3_1:49870164-49870183 Msa0360510:intron 45.0%
!! ATCCATCAGAGTTGGTCTTC+GGG + chr3_1:49870445-49870464 None:intergenic 45.0%
CGAAAAGATGGGGTATGAGA+AGG - chr3_1:49870475-49870494 Msa0360510:intron 45.0%
AAAGATGGGGTATGAGAAGG+AGG - chr3_1:49870478-49870497 Msa0360510:intron 45.0%
CATCATGACGAAGAAGTTCG+AGG - chr3_1:49870544-49870563 Msa0360510:intron 45.0%
TCATGACGAAGAAGTTCGAG+GGG - chr3_1:49870546-49870565 Msa0360510:intron 45.0%
GAGACCGAAGGTAATGCAAA+AGG - chr3_1:49870587-49870606 Msa0360510:intron 45.0%
GGCACATTGTTGAAACTGGT+TGG + chr3_1:49870828-49870847 None:intergenic 45.0%
AAAGTTGCCCAATCTGATGG+TGG + chr3_1:49870940-49870959 None:intergenic 45.0%
GACAGTAGTAGAGTCAGATG+AGG - chr3_1:49871144-49871163 Msa0360510:intron 45.0%
AGTCAGATGAGGGTAACCTA+TGG - chr3_1:49871155-49871174 Msa0360510:intron 45.0%
GTCAGATGAGGGTAACCTAT+GGG - chr3_1:49871156-49871175 Msa0360510:intron 45.0%
GCATATGGCAATCGTAGACT+TGG + chr3_1:49871286-49871305 None:intergenic 45.0%
TAGAAAACGGGCACTATGAC+AGG - chr3_1:49871390-49871409 Msa0360510:intron 45.0%
!!! GTTTTGTTTTGCTGCTGCAG+AGG + chr3_1:49871434-49871453 None:intergenic 45.0%
TTGTTTGCTTAGAGAGGCTG+AGG + chr3_1:49871513-49871532 None:intergenic 45.0%
ACGACAAACACTCCTTCCTT+TGG - chr3_1:49871549-49871568 Msa0360510:intron 45.0%
! TGGCATTGGAATCCAAAGGA+AGG + chr3_1:49871564-49871583 None:intergenic 45.0%
CGGCTTGTCTGTTCTATGAA+TGG + chr3_1:49871584-49871603 None:intergenic 45.0%
AGAAGTGGAAGAGCTAGTGA+AGG + chr3_1:49871655-49871674 None:intergenic 45.0%
TCCTAGCTCGATTCAAAAGC+CGG - chr3_1:49871703-49871722 Msa0360510:intron 45.0%
TGAGGTTGCTGCCAAACAAA+AGG - chr3_1:49871834-49871853 Msa0360510:intron 45.0%
! TACAGGTGCACTCCCATTTT+TGG + chr3_1:49872041-49872060 None:intergenic 45.0%
!! GGTGCACTTCCTATTTTGGA+AGG + chr3_1:49872269-49872288 None:intergenic 45.0%
GAACTATCAGCCTTCTTTGC+GGG + chr3_1:49872290-49872309 None:intergenic 45.0%
CGAATCTTCTGGTGAAGATG+AGG - chr3_1:49872325-49872344 Msa0360510:intron 45.0%
GGGTTGAAGACCATATCAAC+AGG - chr3_1:49872461-49872480 Msa0360510:intron 45.0%
! GTCAGATTTTTGCACACCGA+AGG + chr3_1:49872669-49872688 None:intergenic 45.0%
CGTCTTGCTTCTCATAAGGA+TGG - chr3_1:49872807-49872826 Msa0360510:intron 45.0%
TGTTGAGTTTGCAACTGCAG+AGG - chr3_1:49868435-49868454 Msa0360510:intron 45.0%
! CTGTCCGACTTGATTTAGCT+CGG - chr3_1:49873027-49873046 Msa0360510:CDS 45.0%
! TGTCCGACTTGATTTAGCTC+GGG - chr3_1:49873028-49873047 Msa0360510:CDS 45.0%
TCTCCCGAGCTAAATCAAGT+CGG + chr3_1:49873034-49873053 None:intergenic 45.0%
! ACTTGATTTAGCTCGGGAGA+GGG - chr3_1:49873034-49873053 Msa0360510:CDS 45.0%
CGTGCAGGATTCTATAAACC+AGG - chr3_1:49873240-49873259 Msa0360510:CDS 45.0%
!! AGAAAAATATTTAATTAAAA+CGG + chr3_1:49869474-49869493 None:intergenic 5.0%
GTTGCAGCAGATGATCTCCT+AGG - chr3_1:49865766-49865785 Msa0360510:intron 50.0%
GGTAACCGAGGATAATGCCT+AGG + chr3_1:49865786-49865805 None:intergenic 50.0%
! GTTGGTGAACTGAAGCGTAC+TGG - chr3_1:49865817-49865836 Msa0360510:intron 50.0%
GAAAGATAGGGCCAACGAAG+AGG + chr3_1:49865861-49865880 None:intergenic 50.0%
GGCCCTATCTTTCGAAGAAC+AGG - chr3_1:49865868-49865887 Msa0360510:intron 50.0%
! CGCTACTCGACTTGTGAACA+TGG - chr3_1:49865894-49865913 Msa0360510:intron 50.0%
CAGCACCTTGCTACAAACAC+AGG + chr3_1:49866048-49866067 None:intergenic 50.0%
CGAAAAGATGGGGTATGAGG+AGG - chr3_1:49866120-49866139 Msa0360510:CDS 50.0%
AAAGATGGGGTATGAGGAGG+AGG - chr3_1:49866123-49866142 Msa0360510:CDS 50.0%
AAATAAACAGCACGGAGGGG+GGG + chr3_1:49866279-49866298 None:intergenic 50.0%
GGTCTGTCCTGATGAAGATG+AGG - chr3_1:49866564-49866583 Msa0360510:intron 50.0%
TATAGGCAAGAGGCAAGCTG+AGG - chr3_1:49867839-49867858 Msa0360510:intron 50.0%
ATGTCGAGAGCTTACGCGTT+TGG + chr3_1:49868464-49868483 None:intergenic 50.0%
ACTTCCGGGCTTCTTCAAGT+CGG + chr3_1:49868643-49868662 None:intergenic 50.0%
CATTGTGCATGAGCCGAAAG+GGG + chr3_1:49868732-49868751 None:intergenic 50.0%
TTCTCCTGTGAAGTCTGGAG+CGG - chr3_1:49869855-49869874 Msa0360510:intron 50.0%
AAGATATGTGTCCCCGGATG+TGG - chr3_1:49869903-49869922 Msa0360510:intron 50.0%
!! ATCAGAGTTGGTCTTCGGGA+CGG + chr3_1:49870441-49870460 None:intergenic 50.0%
GGGGAAGCAGATGCATTATG+CGG - chr3_1:49870565-49870584 Msa0360510:intron 50.0%
ATGCATTATGCGGAGACCGA+AGG - chr3_1:49870575-49870594 Msa0360510:intron 50.0%
CTTAGAGAGGCTGAGGTATG+CGG + chr3_1:49871506-49871525 None:intergenic 50.0%
! TCCGGCTTTTGAATCGAGCT+AGG + chr3_1:49871707-49871726 None:intergenic 50.0%
TATAGGCAAGAGGCAAGCTG+TGG - chr3_1:49867839-49867858 Msa0360510:intron 50.0%
!! GGTGCACTCCCATTTTTGGA+TGG + chr3_1:49872037-49872056 None:intergenic 50.0%
GAAGGAACAACTTCTGCTGC+AGG + chr3_1:49872251-49872270 None:intergenic 50.0%
! TGCGGGTGCACTTCCTATTT+TGG + chr3_1:49872273-49872292 None:intergenic 50.0%
GGGTACCCACGAATGAATGT+AGG + chr3_1:49872436-49872455 None:intergenic 50.0%
TCATTCGTGGGTACCCCTAA+TGG - chr3_1:49872440-49872459 Msa0360510:intron 50.0%
CATTCGTGGGTACCCCTAAT+GGG - chr3_1:49872441-49872460 Msa0360510:intron 50.0%
! GACTTGATTTAGCTCGGGAG+AGG - chr3_1:49873033-49873052 Msa0360510:CDS 50.0%
! CTTGATTTAGCTCGGGAGAG+GGG - chr3_1:49873035-49873054 Msa0360510:CDS 50.0%
CAAGGGGAAGCAGATGCATG+CGG - chr3_1:49866207-49866226 Msa0360510:intron 55.0%
CAGATGCATGCGGAGAACGA+AGG - chr3_1:49866217-49866236 Msa0360510:intron 55.0%
AATAAACAGCACGGAGGGGG+GGG + chr3_1:49866278-49866297 None:intergenic 55.0%
TCAGCTCATGAGGCTCGTTC+AGG + chr3_1:49866528-49866547 None:intergenic 55.0%
GAACGAGCCTCATGAGCTGA+AGG - chr3_1:49866528-49866547 Msa0360510:CDS 55.0%
GAAGGAACAGCTTCTGCTGC+AGG + chr3_1:49866708-49866727 None:intergenic 55.0%
GGGCAACAACTGTTGCAACG+TGG - chr3_1:49868614-49868633 Msa0360510:CDS 55.0%
! GTGTCCGACTTGAAGAAGCC+CGG - chr3_1:49868636-49868655 Msa0360510:CDS 55.0%
GACTTGAAGAAGCCCGGAAG+TGG - chr3_1:49868642-49868661 Msa0360510:CDS 55.0%
AGGAAATGGACGCCACTTCC+GGG + chr3_1:49868657-49868676 None:intergenic 55.0%
GAGGAAATGGACGCCACTTC+CGG + chr3_1:49868658-49868677 None:intergenic 55.0%
AAGTGGCGTCCATTTCCTCG+TGG - chr3_1:49868659-49868678 Msa0360510:CDS 55.0%
GGGGAGCCTCTATCAGATTC+AGG + chr3_1:49869331-49869350 None:intergenic 55.0%
GATAGAGGCTCCCCCTGATT+AGG - chr3_1:49869337-49869356 Msa0360510:intron 55.0%
GATCGCCAAGACGCTATCCT+CGG - chr3_1:49870039-49870058 Msa0360510:intron 55.0%
CGTAACCGAGGATAGCGTCT+TGG + chr3_1:49870047-49870066 None:intergenic 55.0%
!! TCAGAGTTGGTCTTCGGGAC+GGG + chr3_1:49870440-49870459 None:intergenic 55.0%
GTCCCGAAGACCAACTCTGA+TGG - chr3_1:49870440-49870459 Msa0360510:intron 55.0%
TTTGCTGCTGCAGAGGGCTT+AGG + chr3_1:49871427-49871446 None:intergenic 55.0%
GCAAGCTGTGGAAGAAGTCG+AGG - chr3_1:49871783-49871802 Msa0360510:intron 55.0%
! AGGAAGTGCACCCGCAAAGA+AGG - chr3_1:49872277-49872296 Msa0360510:intron 55.0%
TGGACTGTTTACAGGCGTGC+AGG - chr3_1:49873225-49873244 Msa0360510:intron 55.0%
GTCTCTTACGACCACACCCG+GGG + chr3_1:49865656-49865675 None:intergenic 60.0%
CGTCTCTTACGACCACACCC+GGG + chr3_1:49865657-49865676 None:intergenic 60.0%
GCGTCTCTTACGACCACACC+CGG + chr3_1:49865658-49865677 None:intergenic 60.0%
GATGGGGTATGAGGAGGAGG+CGG - chr3_1:49866126-49866145 Msa0360510:CDS 60.0%
ATAAACAGCACGGAGGGGGG+GGG + chr3_1:49866277-49866296 None:intergenic 60.0%
! TCCTGTGAAGTCTGGAGCGG+AGG - chr3_1:49869858-49869877 Msa0360510:intron 60.0%
TCCTCCGCTCCAGACTTCAC+AGG + chr3_1:49869862-49869881 None:intergenic 60.0%
TAAACAGCACGGAGGGGGGG+GGG + chr3_1:49866276-49866295 None:intergenic 65.0%
TGCTGCAGAGGGCTTAGGCG+GGG + chr3_1:49871422-49871441 None:intergenic 65.0%
CTGCTGCAGAGGGCTTAGGC+GGG + chr3_1:49871423-49871442 None:intergenic 65.0%
GCTGCTGCAGAGGGCTTAGG+CGG + chr3_1:49871424-49871443 None:intergenic 65.0%
GCTGCAGAGGGCTTAGGCGG+GGG + chr3_1:49871421-49871440 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr3_1 gene 49865646 49873524 49865646 ID=Msa0360510;Name=Msa0360510
chr3_1 mRNA 49865646 49873524 49865646 ID=Msa0360510-mRNA-1;Parent=Msa0360510;Name=Msa0360510-mRNA-1;_AED=0.13;_eAED=0.15;_QI=0|0|0|0.91|0.54|0.58|12|0|454
chr3_1 exon 49873419 49873524 49873419 ID=Msa0360510-mRNA-1:exon:8777;Parent=Msa0360510-mRNA-1
chr3_1 exon 49873234 49873397 49873234 ID=Msa0360510-mRNA-1:exon:8776;Parent=Msa0360510-mRNA-1
chr3_1 exon 49872932 49873112 49872932 ID=Msa0360510-mRNA-1:exon:8775;Parent=Msa0360510-mRNA-1
chr3_1 exon 49868970 49869142 49868970 ID=Msa0360510-mRNA-1:exon:8774;Parent=Msa0360510-mRNA-1
chr3_1 exon 49868574 49868757 49868574 ID=Msa0360510-mRNA-1:exon:8773;Parent=Msa0360510-mRNA-1
chr3_1 exon 49867315 49867394 49867315 ID=Msa0360510-mRNA-1:exon:8772;Parent=Msa0360510-mRNA-1
chr3_1 exon 49867044 49867157 49867044 ID=Msa0360510-mRNA-1:exon:8771;Parent=Msa0360510-mRNA-1
chr3_1 exon 49866480 49866568 49866480 ID=Msa0360510-mRNA-1:exon:8770;Parent=Msa0360510-mRNA-1
chr3_1 exon 49866286 49866403 49866286 ID=Msa0360510-mRNA-1:exon:8769;Parent=Msa0360510-mRNA-1
chr3_1 exon 49866089 49866180 49866089 ID=Msa0360510-mRNA-1:exon:8768;Parent=Msa0360510-mRNA-1
chr3_1 exon 49865897 49865931 49865897 ID=Msa0360510-mRNA-1:exon:8767;Parent=Msa0360510-mRNA-1
chr3_1 exon 49865646 49865674 49865646 ID=Msa0360510-mRNA-1:exon:8766;Parent=Msa0360510-mRNA-1
chr3_1 CDS 49873419 49873524 49873419 ID=Msa0360510-mRNA-1:cds;Parent=Msa0360510-mRNA-1
chr3_1 CDS 49873234 49873397 49873234 ID=Msa0360510-mRNA-1:cds;Parent=Msa0360510-mRNA-1
chr3_1 CDS 49872932 49873112 49872932 ID=Msa0360510-mRNA-1:cds;Parent=Msa0360510-mRNA-1
chr3_1 CDS 49868970 49869142 49868970 ID=Msa0360510-mRNA-1:cds;Parent=Msa0360510-mRNA-1
chr3_1 CDS 49868574 49868757 49868574 ID=Msa0360510-mRNA-1:cds;Parent=Msa0360510-mRNA-1
chr3_1 CDS 49867315 49867394 49867315 ID=Msa0360510-mRNA-1:cds;Parent=Msa0360510-mRNA-1
chr3_1 CDS 49867044 49867157 49867044 ID=Msa0360510-mRNA-1:cds;Parent=Msa0360510-mRNA-1
chr3_1 CDS 49866480 49866568 49866480 ID=Msa0360510-mRNA-1:cds;Parent=Msa0360510-mRNA-1
chr3_1 CDS 49866286 49866403 49866286 ID=Msa0360510-mRNA-1:cds;Parent=Msa0360510-mRNA-1
chr3_1 CDS 49866089 49866180 49866089 ID=Msa0360510-mRNA-1:cds;Parent=Msa0360510-mRNA-1
chr3_1 CDS 49865897 49865931 49865897 ID=Msa0360510-mRNA-1:cds;Parent=Msa0360510-mRNA-1
chr3_1 CDS 49865646 49865674 49865646 ID=Msa0360510-mRNA-1:cds;Parent=Msa0360510-mRNA-1
Gene Sequence

>Msa0360510

ATGGTGTCCCCGGGTGTGGTCGTAAGAGACGCAACACCTGTTGACCTATATAAGATTCTGGTGAATGATGTCTTTCCTGACGTGGATACTCAAAGTTTGGTGAATGCAGATGATCTCCTAGGCATTATCCTCGGTTACCTTGTCTTTGATGTTGGTGAACTGAAGCGTACTGGTTACGGTCATATCACTTCCCTCTTCGTTGGCCCTATCTTTCGAAGAACAGGACACGCTACTCGACTTGTGAACATGGCTGAAATGGACTTGAAAAAGCAAGGTGCTGCTCACGTCTCAGTGCTCGTCCCAAAGACCAACACTGACGCATTACTCTTCTTCGAAAAGATGGGGTATGAGGAGGAGGCGGTGACGAGCAATAATATTGATGGGAATGATGATGCTAATGTCATCATGACGAAGAAGCTCAAGGGGAAGCAGATGCATGCGGAGAACGAAGTCATCGCGGATGATCGCCAAGACGCTATCCTCGGTTACGTCATCTTTGATGTCGTTGAACCGAAGAGTAATGGTTGTGGTCATATCACTTCCATCTTCGTTAACCCTATCTTTCGGAGAGAAGGAGTCGCTTCTAAACTTGTGGAAAGCGCTGAAAAGGACTTAAGGGATAAGCAAGGTGCTGCTTACGTCTCAGTGCCCGTCCCGAAGACCAACTCTGATGGATTACTCTTCTTCGAAAAGATGGGGTATGAGAAGGAGGCAGTGAAGAGCAATTATATTGATGGGAAGGATGATGCTAATGTCATCATGACGAAGAAGTTCGAGGGGAAGCAGATGCATTATGCGGAGACCGAAGGCAAGAGGCAAGCTGTGGAAGAAGTCGAGGAAGTTTCTTCAAAGAAGCAAAAGGTAGATGAGGTTGCTGCCAAACAAAAGAACCCTGCAACAAAAGTTGTTCCATCCAAAAATGGGAGTGCACCTGTAAAGAAAGACGATCTTTATTATTCATCTTCTGAAGAATCTTCTGGTGAATCTTCTGATGAAGATGAGCCTAATACTCCTGCTACACAAAATGTGAACAGTCGTGTGAAGACATTATATGTTGGGAACTTATCCTTCGGTGTGCAAAAATCTGACATAGAAAAATTCTTCCAAGATTGTGGAAAAGTAATTGATGTACGTCTTGCTTCTCATAAGGATGGAAAGCTTAAAGGCTTTGGACATGTTGAGTTTGCAACTGCAGAGGCAGCCCAATACGCACTTAAGATGAATGGGCAAGAAATATTGCAACGTGCTGTCCGACTTGATTTAGCTCGGGAGAGGGGTGCATATGCTCCTAATAATAACAGGCGTGCAGGATTCTATAAACCAGGCCTATACCAAGGGAAAAAGACTACTTTTGCCGACGACTAG

Protein sequence

>Msa0360510

MVSPGVVVRDATPVDLYKILVNDVFPDVDTQSLVNADDLLGIILGYLVFDVGELKRTGYGHITSLFVGPIFRRTGHATRLVNMAEMDLKKQGAAHVSVLVPKTNTDALLFFEKMGYEEEAVTSNNIDGNDDANVIMTKKLKGKQMHAENEVIADDRQDAILGYVIFDVVEPKSNGCGHITSIFVNPIFRREGVASKLVESAEKDLRDKQGAAYVSVPVPKTNSDGLLFFEKMGYEKEAVKSNYIDGKDDANVIMTKKFEGKQMHYAETEGKRQAVEEVEEVSSKKQKVDEVAAKQKNPATKVVPSKNGSAPVKKDDLYYSSSEESSGESSDEDEPNTPATQNVNSRVKTLYVGNLSFGVQKSDIEKFFQDCGKVIDVRLASHKDGKLKGFGHVEFATAEAAQYALKMNGQEILQRAVRLDLARERGAYAPNNNRRAGFYKPGLYQGKKTTFADD*