AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0728620

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728620 MtrunA17_Chr5g0421101 94.175 103 6 0 1 103 91 193 2.78e-67 209
Msa0728620 MtrunA17_Chr5g0421101 97.674 86 2 0 103 188 269 354 9.81e-54 174
Msa0728620 MtrunA17_Chr5g0423221 79.612 103 21 0 1 103 115 217 2.37e-57 184
Msa0728620 MtrunA17_Chr5g0423221 67.442 86 28 0 103 188 294 379 3.30e-34 124
Msa0728620 MtrunA17_Chr5g0423201 82.692 104 17 1 1 103 91 194 4.52e-57 183
Msa0728620 MtrunA17_Chr5g0423201 66.279 86 29 0 103 188 270 355 9.33e-35 125
Msa0728620 MtrunA17_Chr5g0421041 65.049 103 36 0 1 103 89 191 5.40e-45 152
Msa0728620 MtrunA17_Chr5g0421041 66.279 86 29 0 103 188 267 352 1.16e-35 127
Msa0728620 MtrunA17_Chr5g0421011 66.667 102 34 0 1 102 91 192 5.76e-45 152
Msa0728620 MtrunA17_Chr5g0421011 62.651 83 31 0 103 185 269 351 5.68e-31 115
Msa0728620 MtrunA17_Chr5g0423251 64.078 103 37 0 1 103 91 193 1.93e-44 150
Msa0728620 MtrunA17_Chr5g0423251 68.675 83 26 0 103 185 269 351 9.77e-34 122
Msa0728620 MtrunA17_Chr5g0423191 64.078 103 37 0 1 103 91 193 7.39e-43 146
Msa0728620 MtrunA17_Chr5g0423191 67.470 83 27 0 103 185 269 351 3.80e-36 129
Msa0728620 MtrunA17_Chr5g0420721 66.304 92 31 0 12 103 4 95 1.07e-41 140
Msa0728620 MtrunA17_Chr5g0420721 71.084 83 24 0 103 185 171 253 6.36e-36 126
Msa0728620 MtrunA17_Chr5g0420901 63.107 103 38 0 1 103 90 192 5.38e-41 141
Msa0728620 MtrunA17_Chr5g0420901 48.214 112 55 2 78 186 240 351 4.34e-29 110
Msa0728620 MtrunA17_Chr5g0420941 64.078 103 37 0 1 103 89 191 2.80e-40 139
Msa0728620 MtrunA17_Chr5g0420941 60.714 84 33 0 103 186 267 350 3.95e-28 107
Msa0728620 MtrunA17_Chr5g0421091 62.500 104 38 1 1 103 89 192 2.56e-38 134
Msa0728620 MtrunA17_Chr5g0421091 50.893 112 52 2 78 186 240 351 2.55e-30 113
Msa0728620 MtrunA17_Chr2g0314381 54.545 110 48 1 1 108 123 232 3.21e-36 129
Msa0728620 MtrunA17_Chr2g0314381 51.807 83 40 0 103 185 301 383 1.59e-22 93.2
Msa0728620 MtrunA17_Chr8g0365241 60.784 102 40 0 2 103 103 204 7.54e-36 128
Msa0728620 MtrunA17_Chr8g0365241 59.036 83 34 0 103 185 280 362 2.67e-27 105
Msa0728620 MtrunA17_Chr5g0420951 59.804 102 41 0 2 103 99 200 8.36e-36 128
Msa0728620 MtrunA17_Chr5g0420951 56.098 82 36 0 103 184 276 357 9.27e-26 101
Msa0728620 MtrunA17_Chr5g0423211 54.717 106 45 1 1 103 91 196 1.00e-34 125
Msa0728620 MtrunA17_Chr5g0423211 47.273 110 54 3 78 184 244 352 8.87e-25 99.0
Msa0728620 MtrunA17_Chr8g0375681 55.882 102 45 0 1 102 28 129 2.46e-33 120
Msa0728620 MtrunA17_Chr8g0375681 51.163 86 42 0 103 188 206 291 4.24e-25 98.6
Msa0728620 MtrunA17_Chr2g0314401 52.941 102 48 0 1 102 97 198 1.21e-32 119
Msa0728620 MtrunA17_Chr2g0314401 51.250 80 39 0 103 182 275 354 1.11e-19 85.1
Msa0728620 MtrunA17_Chr8g0375671 54.902 102 46 0 1 102 100 201 1.25e-32 120
Msa0728620 MtrunA17_Chr8g0375671 54.217 83 38 0 103 185 278 360 3.08e-24 97.4
Msa0728620 MtrunA17_Chr5g0420981 57.843 102 43 0 2 103 99 200 1.49e-32 119
Msa0728620 MtrunA17_Chr5g0420981 56.627 83 36 0 103 185 276 358 4.84e-26 102
Msa0728620 MtrunA17_Chr8g0375601 53.922 102 47 0 1 102 95 196 3.17e-32 119
Msa0728620 MtrunA17_Chr8g0375601 53.012 83 39 0 103 185 273 355 6.70e-25 99.4
Msa0728620 MtrunA17_Chr2g0314391 50.000 110 53 1 1 108 116 225 3.30e-32 119
Msa0728620 MtrunA17_Chr2g0314391 54.217 83 38 0 103 185 294 376 1.52e-24 98.6
Msa0728620 MtrunA17_Chr5g0420881 54.762 84 38 0 103 186 65 148 5.65e-30 107
Msa0728620 MtrunA17_Chr8g0375571 50.000 102 51 0 1 102 93 194 3.05e-29 110
Msa0728620 MtrunA17_Chr8g0375571 56.250 80 35 0 103 182 271 350 1.52e-25 100
Msa0728620 MtrunA17_Chr2g0314371 42.742 124 49 1 1 102 98 221 3.44e-27 105
Msa0728620 MtrunA17_Chr1g0162191 44.118 102 57 0 1 102 93 194 5.61e-27 104
Msa0728620 MtrunA17_Chr1g0162191 50.000 84 41 1 103 185 271 354 1.03e-18 82.4
Msa0728620 MtrunA17_Chr5g0420891 60.000 70 28 0 1 70 90 159 4.52e-26 98.2
Msa0728620 MtrunA17_Chr2g0314361 51.852 81 39 0 104 184 1 81 1.12e-23 89.4
Msa0728620 MtrunA17_Chr8g0375641 55.714 70 31 0 1 70 100 169 4.56e-22 88.2
Msa0728620 MtrunA17_Chr8g0375661 54.286 70 32 0 1 70 100 169 1.85e-21 86.3
Msa0728620 MtrunA17_Chr7g0239121 33.981 103 68 0 1 103 95 197 1.02e-18 82.4
Msa0728620 MtrunA17_Chr7g0239121 34.524 84 55 0 103 186 274 357 1.65e-11 62.0
Msa0728620 MtrunA17_Chr8g0375701 42.157 102 58 1 1 102 99 199 1.29e-18 82.0
Msa0728620 MtrunA17_Chr8g0375701 39.815 108 62 2 78 182 248 355 5.29e-17 77.4
Msa0728620 MtrunA17_Chr3g0087031 36.036 111 69 1 1 109 104 214 2.72e-18 81.3
Msa0728620 MtrunA17_Chr7g0232161 31.068 103 71 0 1 103 104 206 7.04e-17 77.0
Msa0728620 MtrunA17_Chr7g0239111 36.364 110 63 2 1 103 99 208 4.85e-16 74.7
Msa0728620 MtrunA17_Chr7g0239101 28.571 119 82 1 1 119 99 214 5.53e-16 74.7
Msa0728620 MtrunA17_Chr7g0239071 25.166 151 104 2 1 145 44 191 1.65e-15 73.2
Msa0728620 MtrunA17_Chr7g0239071 37.037 81 51 0 103 183 222 302 4.60e-11 60.5
Msa0728620 MtrunA17_Chr7g0239821 29.412 119 81 1 1 119 108 223 2.03e-15 73.2
Msa0728620 MtrunA17_Chr3g0145171 33.684 95 63 0 6 100 103 197 1.45e-14 70.5
Msa0728620 MtrunA17_Chr5g0426891 41.975 81 46 1 103 182 262 342 6.63e-14 68.6
Msa0728620 MtrunA17_Chr2g0296371 32.979 94 63 0 7 100 104 197 5.36e-13 66.2
Msa0728620 MtrunA17_Chr2g0296371 34.568 81 53 0 103 183 277 357 4.43e-12 63.5
Msa0728620 MtrunA17_Chr1g0161041 36.842 95 56 3 91 181 300 394 7.50e-13 65.9
Msa0728620 MtrunA17_Chr8g0370721 31.373 102 70 0 6 107 103 204 2.94e-12 63.9
Msa0728620 MtrunA17_Chr4g0064781 28.283 99 71 0 5 103 96 194 2.12e-11 61.6
Msa0728620 MtrunA17_Chr8g0345831 33.750 80 53 0 103 182 264 343 7.16e-11 60.1
Msa0728620 MtrunA17_Chr8g0375611 49.020 51 26 0 135 185 1 51 8.22e-11 55.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0728620 AT4G25310.2 39.394 231 91 1 1 182 95 325 1.71e-55 178
Msa0728620 AT4G25300.1 40.972 144 73 2 1 143 98 230 2.93e-32 119
Msa0728620 AT4G25300.1 47.500 80 42 0 103 182 277 356 1.45e-20 87.8
Msa0728620 AT1G17020.1 50.980 102 50 0 1 102 99 200 8.26e-32 118
Msa0728620 AT1G17020.1 50.000 80 40 0 103 182 279 358 5.20e-20 86.3
Msa0728620 AT4G25310.1 50.000 102 51 0 1 102 95 196 3.19e-31 116
Msa0728620 AT4G25310.1 50.000 80 40 0 103 182 274 353 3.67e-21 89.4
Msa0728620 AT1G17010.1 48.039 102 53 0 1 102 100 201 5.15e-28 107
Msa0728620 AT1G17010.1 52.439 82 39 0 103 184 279 360 4.30e-23 94.7
Msa0728620 AT1G78550.2 40.351 114 67 1 1 113 21 134 8.57e-25 97.8
Msa0728620 AT1G78550.2 38.384 99 59 1 86 182 180 278 6.75e-18 79.3
Msa0728620 AT1G78550.1 40.351 114 67 1 1 113 99 212 2.28e-24 98.2
Msa0728620 AT1G78550.1 38.384 99 59 1 86 182 258 356 1.33e-17 79.7
Msa0728620 AT4G25300.2 47.500 80 42 0 103 182 183 262 7.24e-21 87.0
Msa0728620 AT3G21420.1 39.130 92 56 0 7 98 109 200 1.23e-18 82.4
Msa0728620 AT2G38240.1 32.673 101 68 0 7 107 97 197 1.28e-15 73.9
Msa0728620 AT2G38240.1 42.105 76 44 0 103 178 272 347 6.82e-13 66.2
Msa0728620 AT5G54000.1 28.947 114 81 0 5 118 17 130 5.67e-14 68.6
Msa0728620 AT5G54000.2 28.947 114 81 0 5 118 97 210 1.05e-13 68.6
Msa0728620 AT1G49390.2 29.126 103 73 0 5 107 17 119 3.38e-13 66.6
Msa0728620 AT5G20400.1 27.928 111 80 0 5 115 96 206 5.91e-13 66.2
Msa0728620 AT1G49390.1 30.208 96 67 0 5 100 96 191 6.45e-13 66.2
Msa0728620 AT5G20550.1 28.182 110 79 0 6 115 97 206 1.11e-12 65.5
Msa0728620 AT3G13610.1 31.250 80 55 0 103 182 282 361 2.80e-11 61.6

Find 108 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CAGAGGCTGGGGTTTCTTTC+AGG 0.103321 5_1:+33507244 Msa0728620:five_prime_UTR
CTGCTTTGTTCAAAAGAATT+AGG 0.136266 5_1:+33510801 Msa0728620:CDS
CATCTTCATTTCGAACAATT+TGG 0.174927 5_1:+33508179 Msa0728620:five_prime_UTR
TGTGGTTTGGGTTATGTTAA+TGG 0.205012 5_1:+33508123 Msa0728620:five_prime_UTR
ATTTGGAGGTTTGATAAGTA+TGG 0.236758 5_1:+33508196 Msa0728620:five_prime_UTR
TGGAAGAGAAGAAGAAATTT+TGG 0.240926 5_1:+33509764 Msa0728620:CDS
CTGAATGGTTCGGGAATATT+AGG 0.242022 5_1:-33509913 None:intergenic
ACTAGTCATTTCAAAGTAAA+AGG 0.260479 5_1:+33508655 Msa0728620:five_prime_UTR
AGGGCAGTTGATTACCTTAA+TGG 0.267607 5_1:+33510821 Msa0728620:CDS
GTAGAAATGTTAATAATAAA+TGG 0.281730 5_1:+33511009 Msa0728620:three_prime_UTR
AAACTAGCTGTCACGATAAT+TGG 0.284486 5_1:+33510081 Msa0728620:CDS
TGAGATTATAGGAGAGTAAT+TGG 0.300326 5_1:+33511735 Msa0728620:three_prime_UTR
GTAAGGATTCAAAATGATAT+TGG 0.310595 5_1:+33510887 Msa0728620:CDS
CTAATATTCCCGAACCATTC+AGG 0.318325 5_1:+33509914 Msa0728620:CDS
TTGCGTGTGTTTGGTGTATA+TGG 0.320549 5_1:+33508255 Msa0728620:five_prime_UTR
GGTAATGATAATGAGATTAT+AGG 0.325247 5_1:+33511724 Msa0728620:three_prime_UTR
TTGGGTTATGTTAATGGCTT+GGG 0.328973 5_1:+33508129 Msa0728620:five_prime_UTR
CGAATATCAAATGGCTATGA+AGG 0.336608 5_1:+33507025 Msa0728620:five_prime_UTR
TGTGAATCCGAGGGCTTGTT+TGG 0.340576 5_1:+33508412 Msa0728620:five_prime_UTR
ATGTTAATGGCTTGGGATAT+CGG 0.343694 5_1:+33508136 Msa0728620:five_prime_UTR
TGCATCAATTGGTAATTTGC+TGG 0.346910 5_1:+33508542 Msa0728620:five_prime_UTR
TATCAATTGCCACATTTCAT+AGG 0.353427 5_1:+33510723 Msa0728620:CDS
TGAAGGTATTATCTTGGAAT+TGG 0.363000 5_1:+33508342 Msa0728620:five_prime_UTR
TTTGTGTTAGAAACAGCAAT+AGG 0.367044 5_1:-33507137 None:intergenic
CCAAACCCCTGCACATCATT+TGG 0.370694 5_1:-33509793 None:intergenic
TTTGGGTTATGTTAATGGCT+TGG 0.372752 5_1:+33508128 Msa0728620:five_prime_UTR
TCAATTTACCCGTGCAATCT+AGG 0.377143 5_1:-33511688 None:intergenic
TGCTTTGTTCAAAAGAATTA+GGG 0.377635 5_1:+33510802 Msa0728620:CDS
TTGACCATGCCTGCAGAGGC+TGG 0.378393 5_1:+33507231 Msa0728620:five_prime_UTR
CCAAATGATGTGCAGGGGTT+TGG 0.387987 5_1:+33509793 Msa0728620:CDS
CGTTCTGGAATATTAGTAAT+GGG 0.388524 5_1:-33507092 None:intergenic
ACAGCAATAGGGTCTTGATT+TGG 0.391094 5_1:-33507125 None:intergenic
ACTCAAATGAGCAAAATTCT+AGG 0.395647 5_1:+33510746 Msa0728620:CDS
TAAGAAAACCTGAATGGTTC+GGG 0.396401 5_1:-33509922 None:intergenic
CATCACGTGTTAGTGTGATT+TGG 0.396732 5_1:+33508231 Msa0728620:five_prime_UTR
TTCTGGTGGTATGTATCTGT+TGG 0.413538 5_1:+33508472 Msa0728620:five_prime_UTR
TTTGGATGAAGATATCGTTC+TGG 0.416042 5_1:-33507107 None:intergenic
GTAAGAAAACCTGAATGGTT+CGG 0.417474 5_1:-33509923 None:intergenic
AATTTCTTCTTCTCTTCCAT+TGG 0.427457 5_1:-33509760 None:intergenic
TGACCATGCCTGCAGAGGCT+GGG 0.428639 5_1:+33507232 Msa0728620:five_prime_UTR
TTGCTCGATGTTCAATGCTT+CGG 0.429068 5_1:-33510676 None:intergenic
AATTTATGCAGGTCGATAAC+AGG 0.430269 5_1:-33507176 None:intergenic
GACCATGCCTGCAGAGGCTG+GGG 0.431332 5_1:+33507233 Msa0728620:five_prime_UTR
TCATTATCATTACCTTCTCA+TGG 0.434263 5_1:-33511715 None:intergenic
ACTACTCTGGTGTGGATTAG+TGG 0.440284 5_1:+33511661 Msa0728620:intron
TGATTTGGTTTGCGTGTGTT+TGG 0.440823 5_1:+33508246 Msa0728620:five_prime_UTR
CAGCCAACTTATGCCGCAAC+AGG 0.441976 5_1:-33508578 None:intergenic
CTAATGAACAGAAGCTAGAA+TGG 0.442275 5_1:+33509833 Msa0728620:CDS
AAAGAAACCCCAGCCTCTGC+AGG 0.453935 5_1:-33507240 None:intergenic
TCTGGTGGTATGTATCTGTT+GGG 0.455927 5_1:+33508473 Msa0728620:five_prime_UTR
AATCATGCATAGATGTTGTA+AGG 0.464909 5_1:+33510870 Msa0728620:CDS
AGGAAGTGAAGGTATTATCT+TGG 0.466726 5_1:+33508336 Msa0728620:five_prime_UTR
GCAAACACCAAATGATGTGC+AGG 0.468585 5_1:+33509786 Msa0728620:CDS
AGTTGGCTGTTTAGCATATG+TGG 0.470049 5_1:+33508592 Msa0728620:five_prime_UTR
GTGAATCCGAGGGCTTGTTT+GGG 0.475863 5_1:+33508413 Msa0728620:five_prime_UTR
CAGGTCTTTCAGCAGTAATA+AGG 0.476338 5_1:-33510781 None:intergenic
TATCAATTATCCAATAAATC+CGG 0.477751 5_1:+33506977 Msa0728620:five_prime_UTR
TTGTGTTAGAAACAGCAATA+GGG 0.481953 5_1:-33507136 None:intergenic
TAGATTACAACTTGCAACAT+TGG 0.483252 5_1:+33508387 Msa0728620:five_prime_UTR
GGTTCCTTCCGTTCAAGAGT+TGG 0.501576 5_1:+33507061 Msa0728620:five_prime_UTR
TATGAAGGGAACCTCTCTCT+TGG 0.503987 5_1:+33507040 Msa0728620:five_prime_UTR
AGACGTGGATGCCTTGCATC+CGG 0.505541 5_1:-33509886 None:intergenic
CTTCATTTCGAACAATTTGG+AGG 0.506186 5_1:+33508182 Msa0728620:five_prime_UTR
TCGTTCTGGAATATTAGTAA+TGG 0.506856 5_1:-33507093 None:intergenic
TTTGGAGGTTTGATAAGTAT+GGG 0.513232 5_1:+33508197 Msa0728620:five_prime_UTR
ACAATTTCTCAAACTTCCAA+TGG 0.513582 5_1:+33509744 Msa0728620:CDS
ATTGTTGAAAATATGAAGAC+AGG 0.514527 5_1:+33509715 Msa0728620:exon
CACGTGACATGAATCCATTA+AGG 0.515794 5_1:-33510835 None:intergenic
GTTCCTGTTGCGGCATAAGT+TGG 0.520047 5_1:+33508575 Msa0728620:five_prime_UTR
TAATTGCAGCTGATCAATCA+TGG 0.522173 5_1:+33509679 Msa0728620:intron
AACCCCAGCCTCTGCAGGCA+TGG 0.523413 5_1:-33507235 None:intergenic
TGGTCTCAACGAATATCAAA+TGG 0.526423 5_1:+33507016 Msa0728620:five_prime_UTR
TAATGAACAGAAGCTAGAAT+GGG 0.537867 5_1:+33509834 Msa0728620:CDS
CTTTCAGCAGTAATAAGGTC+TGG 0.538784 5_1:-33510776 None:intergenic
CTACATTAACACTTTCCCAC+CGG 0.541257 5_1:+33509867 Msa0728620:CDS
TAAATCCGGACAAAACGATT+GGG 0.542070 5_1:+33506991 Msa0728620:five_prime_UTR
AGAAAGTAAGAAAACCTGAA+TGG 0.547726 5_1:-33509928 None:intergenic
GCAGTAATAAGGTCTGGTGT+TGG 0.551448 5_1:-33510770 None:intergenic
TTTACCAACTCTTGAACGGA+AGG 0.555393 5_1:-33507065 None:intergenic
ATAAATCCGGACAAAACGAT+TGG 0.557128 5_1:+33506990 Msa0728620:five_prime_UTR
CGTGGATGCCTTGCATCCGG+TGG 0.559653 5_1:-33509883 None:intergenic
CATCAGACAACAATTTATGC+AGG 0.564900 5_1:-33507187 None:intergenic
ACACTTTCCCACCGGATGCA+AGG 0.566034 5_1:+33509875 Msa0728620:CDS
ATGTCTCCCAAACAAGCCCT+CGG 0.569020 5_1:-33508419 None:intergenic
TTGAGTAGCTGTTCCTGTTG+CGG 0.575386 5_1:+33508565 Msa0728620:five_prime_UTR
TGTCACGATAATTGGTCGTA+TGG 0.578135 5_1:+33510089 Msa0728620:CDS
TAAATTGAAAATCCATGAGA+AGG 0.582268 5_1:+33511703 Msa0728620:three_prime_UTR
CCGGACAAAACGATTGGGAC+TGG 0.583889 5_1:+33506996 Msa0728620:five_prime_UTR
CTGTTTAGCATATGTGGCAA+TGG 0.584119 5_1:+33508598 Msa0728620:five_prime_UTR
CAATCAATTCAATGAATGAG+AGG 0.588095 5_1:+33510699 Msa0728620:CDS
AGTGGATGACCTAGATTGCA+CGG 0.594474 5_1:+33511679 Msa0728620:three_prime_UTR
TCATGTCACGTGAGCTACAA+GGG 0.595682 5_1:+33510846 Msa0728620:CDS
GAATATCAAATGGCTATGAA+GGG 0.595728 5_1:+33507026 Msa0728620:five_prime_UTR
AAAATTGGTGGAGGAAGTGA+AGG 0.597899 5_1:+33508325 Msa0728620:five_prime_UTR
TTCATGTCACGTGAGCTACA+AGG 0.598663 5_1:+33510845 Msa0728620:CDS
AACATTGGTGTGTGAATCCG+AGG 0.605949 5_1:+33508402 Msa0728620:five_prime_UTR
CAAACACCAAATGATGTGCA+GGG 0.607976 5_1:+33509787 Msa0728620:CDS
GTGGATGACCTAGATTGCAC+GGG 0.630796 5_1:+33511680 Msa0728620:three_prime_UTR
GGGCTTGTTTGGGAGACATG+AGG 0.636537 5_1:+33508423 Msa0728620:five_prime_UTR
GTGGATGCCTTGCATCCGGT+GGG 0.643727 5_1:-33509882 None:intergenic
TTTGGTGTATATGGAAAGCA+AGG 0.649541 5_1:+33508264 Msa0728620:five_prime_UTR
AACGGAAGGAACCAAGAGAG+AGG 0.659896 5_1:-33507051 None:intergenic
CATTTGAGTCCTATGAAATG+TGG 0.671806 5_1:-33510732 None:intergenic
AAACACCAAATGATGTGCAG+GGG 0.677901 5_1:+33509788 Msa0728620:CDS
AGGTCGATAACAGGAACTTG+TGG 0.678953 5_1:-33507167 None:intergenic
TTAATGGCTTGGGATATCGG+CGG 0.693345 5_1:+33508139 Msa0728620:five_prime_UTR
GGAATATTAGGAATTAGACG+TGG 0.731570 5_1:-33509901 None:intergenic
ACATTGGTGTGTGAATCCGA+GGG 0.744731 5_1:+33508403 Msa0728620:five_prime_UTR

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TCACTTTTATTTTTTAAATT+AGG + chr5_1:33507562-33507581 Msa0728620:intron 10.0%
!!! CACTTTTATTTTTTAAAATA+CGG - chr5_1:33507693-33507712 None:intergenic 10.0%
!!! AGTTTTTTTTTTTTTAAAAG+AGG - chr5_1:33508962-33508981 None:intergenic 10.0%
!! AAACAGTTCAATTAAAAAAA+GGG - chr5_1:33507328-33507347 None:intergenic 15.0%
!! AGAAATTATCATTGAAAAAT+TGG + chr5_1:33508310-33508329 Msa0728620:five_prime_UTR 15.0%
!!! TTTTTTGAAGATATATATCA+AGG + chr5_1:33510150-33510169 Msa0728620:intron 15.0%
!! GTAGAAATGTTAATAATAAA+TGG + chr5_1:33511009-33511028 Msa0728620:three_prime_UTR 15.0%
!!! TTTGAATTTTGATATTATGT+TGG - chr5_1:33511341-33511360 None:intergenic 15.0%
!! TTGTATTCAAAACATTATTA+GGG + chr5_1:33511403-33511422 Msa0728620:intron 15.0%
!!! GGTTTTAAAAAAAAAAACAA+GGG - chr5_1:33511460-33511479 None:intergenic 15.0%
!!! TGGTTTTAAAAAAAAAAACA+AGG - chr5_1:33511461-33511480 None:intergenic 15.0%
!!! TGTTTTTTTTTTTAAAACCA+AGG + chr5_1:33511461-33511480 Msa0728620:intron 15.0%
!! TATCAATTATCCAATAAATC+CGG + chr5_1:33506977-33506996 Msa0728620:five_prime_UTR 20.0%
!! CCATTAAAATTAAGTAAATG+GGG - chr5_1:33507289-33507308 None:intergenic 20.0%
!! GCCATTAAAATTAAGTAAAT+GGG - chr5_1:33507290-33507309 None:intergenic 20.0%
!! TGCCATTAAAATTAAGTAAA+TGG - chr5_1:33507291-33507310 None:intergenic 20.0%
!! CAAACAGTTCAATTAAAAAA+AGG - chr5_1:33507329-33507348 None:intergenic 20.0%
!!! AAGTCAGAAATTACAAATTT+TGG - chr5_1:33507405-33507424 None:intergenic 20.0%
!!! ATATTTGCAACATAGATTTT+GGG + chr5_1:33507816-33507835 Msa0728620:intron 20.0%
!!! ACTAAACATGAAACTTTTAA+TGG - chr5_1:33507954-33507973 None:intergenic 20.0%
!! TAAAAGTTTCATGTTTAGTT+TGG + chr5_1:33507955-33507974 Msa0728620:intron 20.0%
!! AATTATCATTGAAAAATTGG+TGG + chr5_1:33508313-33508332 Msa0728620:five_prime_UTR 20.0%
!!! TTTTTTGTGATCATATGTAT+TGG + chr5_1:33508755-33508774 Msa0728620:intron 20.0%
!!! AGCTTTTTTTGTAATCAATT+TGG + chr5_1:33508857-33508876 Msa0728620:intron 20.0%
!! GCAAAAAAAATGATAATTGA+AGG + chr5_1:33509018-33509037 Msa0728620:intron 20.0%
!!! ATGAAAAGTATTTGTACATA+AGG - chr5_1:33509241-33509260 None:intergenic 20.0%
!!! TCATGATTTTAATCACAATT+TGG - chr5_1:33510408-33510427 None:intergenic 20.0%
!! ACATGAACAATAATTCTTAA+AGG - chr5_1:33510619-33510638 None:intergenic 20.0%
!! AATGTTAATAATAAATGGTG+TGG + chr5_1:33511014-33511033 Msa0728620:intron 20.0%
!! TAAAACCTTTCATAAGATTT+AGG - chr5_1:33511256-33511275 None:intergenic 20.0%
!!! TTTCGTAATGTTTTGAATTT+TGG - chr5_1:33511306-33511325 None:intergenic 20.0%
!!! GGATTTAATGTTTTGAATTT+TGG - chr5_1:33511372-33511391 None:intergenic 20.0%
!! CTTGTATTCAAAACATTATT+AGG + chr5_1:33511402-33511421 Msa0728620:intron 20.0%
!! CCCCATTTACTTAATTTTAA+TGG + chr5_1:33507286-33507305 Msa0728620:intron 25.0%
! TGAACTGTTTGATCTTTAAT+TGG + chr5_1:33507338-33507357 Msa0728620:intron 25.0%
!! TCAGAAATTACAAATTTTGG+AGG - chr5_1:33507402-33507421 None:intergenic 25.0%
! TCTATTACAATAGAGAATAG+AGG + chr5_1:33507773-33507792 Msa0728620:intron 25.0%
!! GATATTTGCAACATAGATTT+TGG + chr5_1:33507815-33507834 Msa0728620:intron 25.0%
!! TATTTGCAACATAGATTTTG+GGG + chr5_1:33507817-33507836 Msa0728620:intron 25.0%
! AAATGTGTATTCAGTTAAAG+AGG + chr5_1:33507854-33507873 Msa0728620:intron 25.0%
!! TTCATATCAGTTAGATTTTC+TGG + chr5_1:33508455-33508474 Msa0728620:five_prime_UTR 25.0%
! ACTAGTCATTTCAAAGTAAA+AGG + chr5_1:33508655-33508674 Msa0728620:five_prime_UTR 25.0%
!! ATATTGTGCATTTTCACATA+AGG + chr5_1:33508684-33508703 Msa0728620:five_prime_UTR 25.0%
!!! GTGCATTCTAAGATTTTTTT+TGG + chr5_1:33509652-33509671 Msa0728620:intron 25.0%
! ATTGTTGAAAATATGAAGAC+AGG + chr5_1:33509715-33509734 Msa0728620:exon 25.0%
! AAGATATATATCAAGGAATG+AGG + chr5_1:33510157-33510176 Msa0728620:intron 25.0%
! ACAAGTGTCATGAAAAAAAA+AGG + chr5_1:33510515-33510534 Msa0728620:intron 25.0%
! TATAAATACATCTAACCTAC+AGG - chr5_1:33510595-33510614 None:intergenic 25.0%
!! CTTTTGCAGATATTAACTAA+CGG + chr5_1:33510647-33510666 Msa0728620:intron 25.0%
!! TGCTTTGTTCAAAAGAATTA+GGG + chr5_1:33510802-33510821 Msa0728620:CDS 25.0%
! GTAAGGATTCAAAATGATAT+TGG + chr5_1:33510887-33510906 Msa0728620:CDS 25.0%
! TCCTAAAAGTTATGAAATAG+CGG - chr5_1:33511121-33511140 None:intergenic 25.0%
! TTGAATACAAGATTCTCTTT+AGG - chr5_1:33511393-33511412 None:intergenic 25.0%
! TAAATTGAAAATCCATGAGA+AGG + chr5_1:33511703-33511722 Msa0728620:three_prime_UTR 25.0%
!! GGTAATGATAATGAGATTAT+AGG + chr5_1:33511724-33511743 Msa0728620:three_prime_UTR 25.0%
GAATATCAAATGGCTATGAA+GGG + chr5_1:33507026-33507045 Msa0728620:five_prime_UTR 30.0%
!! TTGTTTTACCAACTCTTGAA+CGG - chr5_1:33507072-33507091 None:intergenic 30.0%
!! CGTTCTGGAATATTAGTAAT+GGG - chr5_1:33507095-33507114 None:intergenic 30.0%
!! TCGTTCTGGAATATTAGTAA+TGG - chr5_1:33507096-33507115 None:intergenic 30.0%
TTGTGTTAGAAACAGCAATA+GGG - chr5_1:33507139-33507158 None:intergenic 30.0%
TTTGTGTTAGAAACAGCAAT+AGG - chr5_1:33507140-33507159 None:intergenic 30.0%
! TCTCTTCACGTTTAAAATTG+CGG - chr5_1:33507447-33507466 None:intergenic 30.0%
AATACCAATTCAGAACAGAA+AGG + chr5_1:33507473-33507492 Msa0728620:intron 30.0%
! ATTTGCAACATAGATTTTGG+GGG + chr5_1:33507818-33507837 Msa0728620:intron 30.0%
! TTCAGTTAAAGAGGTATACA+AGG + chr5_1:33507863-33507882 Msa0728620:intron 30.0%
! TCAGTTAAAGAGGTATACAA+GGG + chr5_1:33507864-33507883 Msa0728620:intron 30.0%
! TCAAAACAGATTAGCTACAA+CGG + chr5_1:33507986-33508005 Msa0728620:intron 30.0%
AAAATTCCATTTAGTGCGTA+GGG + chr5_1:33508039-33508058 Msa0728620:intron 30.0%
CATCTTCATTTCGAACAATT+TGG + chr5_1:33508179-33508198 Msa0728620:five_prime_UTR 30.0%
ATTTGGAGGTTTGATAAGTA+TGG + chr5_1:33508196-33508215 Msa0728620:five_prime_UTR 30.0%
TTTGGAGGTTTGATAAGTAT+GGG + chr5_1:33508197-33508216 Msa0728620:five_prime_UTR 30.0%
TATCATTGAAAAATTGGTGG+AGG + chr5_1:33508316-33508335 Msa0728620:five_prime_UTR 30.0%
!! TGAAGGTATTATCTTGGAAT+TGG + chr5_1:33508342-33508361 Msa0728620:five_prime_UTR 30.0%
TAGATTACAACTTGCAACAT+TGG + chr5_1:33508387-33508406 Msa0728620:five_prime_UTR 30.0%
! ATATCAGTTAGATTTTCTGG+TGG + chr5_1:33508458-33508477 Msa0728620:five_prime_UTR 30.0%
ACATAAAAAACAACACTCCA+AGG - chr5_1:33508512-33508531 None:intergenic 30.0%
!! GCATTTTCACATAAGGTATT+TGG + chr5_1:33508691-33508710 Msa0728620:intron 30.0%
ATTTGGCGTAAAGGATTTAA+AGG + chr5_1:33508708-33508727 Msa0728620:intron 30.0%
TTTGGCGTAAAGGATTTAAA+GGG + chr5_1:33508709-33508728 Msa0728620:intron 30.0%
! GCATTCTGTTGTATTTTGTT+AGG + chr5_1:33508790-33508809 Msa0728620:intron 30.0%
! TTGTATTTTGTTAGGCTTTG+TGG + chr5_1:33508798-33508817 Msa0728620:intron 30.0%
TTTGTAATCAATTTGGAGAC+TGG + chr5_1:33508864-33508883 Msa0728620:intron 30.0%
GGAGACTTGTGATAAAATAA+GGG + chr5_1:33509065-33509084 Msa0728620:intron 30.0%
CTAGGTCAACAACTAAATTA+AGG - chr5_1:33509268-33509287 None:intergenic 30.0%
GTGTTTATTTGAGTATGTGT+CGG - chr5_1:33509294-33509313 None:intergenic 30.0%
CATACTCAAATAAACACACA+CGG + chr5_1:33509297-33509316 Msa0728620:intron 30.0%
ATACTCAAATAAACACACAC+GGG + chr5_1:33509298-33509317 Msa0728620:intron 30.0%
! AAAAATTCGATTTAGAACCG+AGG - chr5_1:33509350-33509369 None:intergenic 30.0%
!!! CTTTTGAGAAAAGTTCTGAA+CGG + chr5_1:33509577-33509596 Msa0728620:intron 30.0%
!!! TTTTGAGAAAAGTTCTGAAC+GGG + chr5_1:33509578-33509597 Msa0728620:intron 30.0%
ACAATTTCTCAAACTTCCAA+TGG + chr5_1:33509744-33509763 Msa0728620:CDS 30.0%
AATTTCTTCTTCTCTTCCAT+TGG - chr5_1:33509763-33509782 None:intergenic 30.0%
! TGGAAGAGAAGAAGAAATTT+TGG + chr5_1:33509764-33509783 Msa0728620:CDS 30.0%
TAATGAACAGAAGCTAGAAT+GGG + chr5_1:33509834-33509853 Msa0728620:CDS 30.0%
AGAAAGTAAGAAAACCTGAA+TGG - chr5_1:33509931-33509950 None:intergenic 30.0%
!! GAGTAAGTAATTGATTTTGC+TGG + chr5_1:33509985-33510004 Msa0728620:intron 30.0%
!! TTCCATCTTTTCTGATTTGA+AGG - chr5_1:33510290-33510309 None:intergenic 30.0%
AAATCAGAAAAGATGGAATG+TGG + chr5_1:33510292-33510311 Msa0728620:intron 30.0%
ATAAGATTTGAATCACTGTC+TGG - chr5_1:33510446-33510465 None:intergenic 30.0%
GTAATAGATATTAGACCTGT+AGG + chr5_1:33510577-33510596 Msa0728620:intron 30.0%
CGTTAGTTAATATCTGCAAA+AGG - chr5_1:33510649-33510668 None:intergenic 30.0%
CAATCAATTCAATGAATGAG+AGG + chr5_1:33510699-33510718 Msa0728620:CDS 30.0%
TATCAATTGCCACATTTCAT+AGG + chr5_1:33510723-33510742 Msa0728620:CDS 30.0%
ACTCAAATGAGCAAAATTCT+AGG + chr5_1:33510746-33510765 Msa0728620:CDS 30.0%
! CTAATTCTTTTGAACAAAGC+AGG - chr5_1:33510803-33510822 None:intergenic 30.0%
! CTGCTTTGTTCAAAAGAATT+AGG + chr5_1:33510801-33510820 Msa0728620:CDS 30.0%
AATCATGCATAGATGTTGTA+AGG + chr5_1:33510870-33510889 Msa0728620:CDS 30.0%
ACAAACATTGTGCTAAAAAC+AGG + chr5_1:33510970-33510989 Msa0728620:three_prime_UTR 30.0%
CAAACATTGTGCTAAAAACA+GGG + chr5_1:33510971-33510990 Msa0728620:three_prime_UTR 30.0%
TGGATCATAGTAGTTAATAG+CGG + chr5_1:33511034-33511053 Msa0728620:intron 30.0%
!! ACCGCTATTTCATAACTTTT+AGG + chr5_1:33511117-33511136 Msa0728620:intron 30.0%
AACCACCTAAATCTTATGAA+AGG + chr5_1:33511248-33511267 Msa0728620:intron 30.0%
AACCTTTCATAAGATTTAGG+TGG - chr5_1:33511253-33511272 None:intergenic 30.0%
!! CGTAATGTTTTGAATTTTGG+TGG - chr5_1:33511303-33511322 None:intergenic 30.0%
TGAAAATACAAGATTCTCCT+TGG - chr5_1:33511481-33511500 None:intergenic 30.0%
TCATTATCATTACCTTCTCA+TGG - chr5_1:33511718-33511737 None:intergenic 30.0%
TGAGATTATAGGAGAGTAAT+TGG + chr5_1:33511735-33511754 Msa0728620:three_prime_UTR 30.0%
! ATCGTTTTGTCCGGATTTAT+TGG - chr5_1:33506990-33507009 None:intergenic 35.0%
ATAAATCCGGACAAAACGAT+TGG + chr5_1:33506990-33507009 Msa0728620:five_prime_UTR 35.0%
TAAATCCGGACAAAACGATT+GGG + chr5_1:33506991-33507010 Msa0728620:five_prime_UTR 35.0%
TGGTCTCAACGAATATCAAA+TGG + chr5_1:33507016-33507035 Msa0728620:five_prime_UTR 35.0%
CGAATATCAAATGGCTATGA+AGG + chr5_1:33507025-33507044 Msa0728620:five_prime_UTR 35.0%
TTTGGATGAAGATATCGTTC+TGG - chr5_1:33507110-33507129 None:intergenic 35.0%
AATTTATGCAGGTCGATAAC+AGG - chr5_1:33507179-33507198 None:intergenic 35.0%
CATCAGACAACAATTTATGC+AGG - chr5_1:33507190-33507209 None:intergenic 35.0%
! CATTCCTTTCTGTTCTGAAT+TGG - chr5_1:33507480-33507499 None:intergenic 35.0%
GAACAGAAAGGAATGATTTG+TGG + chr5_1:33507485-33507504 Msa0728620:intron 35.0%
! TGGTTTATAGCTTGTGTGTT+TGG + chr5_1:33507505-33507524 Msa0728620:intron 35.0%
AGAATAGAGGAGTTTCTTTG+TGG + chr5_1:33507786-33507805 Msa0728620:intron 35.0%
! CAGTTAAAGAGGTATACAAG+GGG + chr5_1:33507865-33507884 Msa0728620:intron 35.0%
GTCTAATGTGTCAAACTCTT+CGG + chr5_1:33507893-33507912 Msa0728620:intron 35.0%
CAAAATTCCATTTAGTGCGT+AGG + chr5_1:33508038-33508057 Msa0728620:intron 35.0%
AAATTCCATTTAGTGCGTAG+GGG + chr5_1:33508040-33508059 Msa0728620:intron 35.0%
AACCACAAACCTGAAAACAA+AGG - chr5_1:33508110-33508129 None:intergenic 35.0%
!!! TTGTTTTCAGGTTTGTGGTT+TGG + chr5_1:33508110-33508129 Msa0728620:intron 35.0%
!!! TGTTTTCAGGTTTGTGGTTT+GGG + chr5_1:33508111-33508130 Msa0728620:intron 35.0%
! TGTGGTTTGGGTTATGTTAA+TGG + chr5_1:33508123-33508142 Msa0728620:five_prime_UTR 35.0%
! TTTGGGTTATGTTAATGGCT+TGG + chr5_1:33508128-33508147 Msa0728620:five_prime_UTR 35.0%
TTGGGTTATGTTAATGGCTT+GGG + chr5_1:33508129-33508148 Msa0728620:five_prime_UTR 35.0%
! ATGTTAATGGCTTGGGATAT+CGG + chr5_1:33508136-33508155 Msa0728620:five_prime_UTR 35.0%
CTTCATTTCGAACAATTTGG+AGG + chr5_1:33508182-33508201 Msa0728620:five_prime_UTR 35.0%
! TTTGGTGTATATGGAAAGCA+AGG + chr5_1:33508264-33508283 Msa0728620:five_prime_UTR 35.0%
!! AGGAAGTGAAGGTATTATCT+TGG + chr5_1:33508336-33508355 Msa0728620:five_prime_UTR 35.0%
!! TCGTTTTTCTGTGCATCAAT+TGG + chr5_1:33508531-33508550 Msa0728620:five_prime_UTR 35.0%
! TGCATCAATTGGTAATTTGC+TGG + chr5_1:33508542-33508561 Msa0728620:five_prime_UTR 35.0%
! ACATAAGGTATTTGGCGTAA+AGG + chr5_1:33508699-33508718 Msa0728620:intron 35.0%
TTGGCGTAAAGGATTTAAAG+GGG + chr5_1:33508710-33508729 Msa0728620:intron 35.0%
!! TTTTGTTAGGCTTTGTGGTT+TGG + chr5_1:33508803-33508822 Msa0728620:intron 35.0%
! TTTGTTAGGCTTTGTGGTTT+GGG + chr5_1:33508804-33508823 Msa0728620:intron 35.0%
AGGTGTACTAGGATTAGATA+AGG - chr5_1:33508903-33508922 None:intergenic 35.0%
ATAACTCTAAACCAAGCACA+AGG - chr5_1:33508923-33508942 None:intergenic 35.0%
TGGGTGTTAAAATTATGCGT+TGG + chr5_1:33508986-33509005 Msa0728620:intron 35.0%
GGGAGACTTGTGATAAAATA+AGG + chr5_1:33509064-33509083 Msa0728620:intron 35.0%
AGAGACATTAGTGAACTACT+TGG + chr5_1:33509165-33509184 Msa0728620:intron 35.0%
GAGACATTAGTGAACTACTT+GGG + chr5_1:33509166-33509185 Msa0728620:intron 35.0%
! ATGTCTAAAGCAAATACCAC+CGG - chr5_1:33509197-33509216 None:intergenic 35.0%
TAAAATGTCCTCAAAGCCAA+TGG + chr5_1:33509373-33509392 Msa0728620:intron 35.0%
AAAATGTCCTCAAAGCCAAT+GGG + chr5_1:33509374-33509393 Msa0728620:intron 35.0%
ATTAGTAATTCATCCCCCAT+TGG - chr5_1:33509392-33509411 None:intergenic 35.0%
! TGTTAGGAAACATGGTTCTA+TGG - chr5_1:33509505-33509524 None:intergenic 35.0%
GCTGAATATGTTAGGAAACA+TGG - chr5_1:33509513-33509532 None:intergenic 35.0%
CTGTTACTGCTGAATATGTT+AGG - chr5_1:33509521-33509540 None:intergenic 35.0%
! CGTTCAGAACTTTTCTCAAA+AGG - chr5_1:33509579-33509598 None:intergenic 35.0%
TAATTGCAGCTGATCAATCA+TGG + chr5_1:33509679-33509698 Msa0728620:intron 35.0%
CTAATGAACAGAAGCTAGAA+TGG + chr5_1:33509833-33509852 Msa0728620:CDS 35.0%
GGAATATTAGGAATTAGACG+TGG - chr5_1:33509904-33509923 None:intergenic 35.0%
TAAGAAAACCTGAATGGTTC+GGG - chr5_1:33509925-33509944 None:intergenic 35.0%
GTAAGAAAACCTGAATGGTT+CGG - chr5_1:33509926-33509945 None:intergenic 35.0%
AAACTAGCTGTCACGATAAT+TGG + chr5_1:33510081-33510100 Msa0728620:CDS 35.0%
CATTTGAGTCCTATGAAATG+TGG - chr5_1:33510735-33510754 None:intergenic 35.0%
!! TAGTAGTTAATAGCGGATAG+CGG + chr5_1:33511041-33511060 Msa0728620:intron 35.0%
! TATCCCGCTATAGCATTTTT+GGG - chr5_1:33511082-33511101 None:intergenic 35.0%
TTTACCAACTCTTGAACGGA+AGG - chr5_1:33507068-33507087 None:intergenic 40.0%
ACAGCAATAGGGTCTTGATT+TGG - chr5_1:33507128-33507147 None:intergenic 40.0%
TTGGAGGTCAAAATCTGAGT+TGG - chr5_1:33507386-33507405 None:intergenic 40.0%
! TAGCTTGTGTGTTTGGATTG+AGG + chr5_1:33507512-33507531 Msa0728620:intron 40.0%
AGCTTGTGTGTTTGGATTGA+GGG + chr5_1:33507513-33507532 Msa0728620:intron 40.0%
TGTGTTTGGATTGAGGGTTT+AGG + chr5_1:33507519-33507538 Msa0728620:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG + chr5_1:33507523-33507542 Msa0728620:intron 40.0%
TTTGGATTGAGGGTTTAGGA+GGG - chr5_1:33507523-33507542 None:intergenic 40.0%
TGTGTTTGGATTGAGGGTTT+AGG - chr5_1:33507519-33507538 None:intergenic 40.0%
AAACCCTCAATCCAAACACA+TGG + chr5_1:33507737-33507756 Msa0728620:intron 40.0%
AACCCTCAATCCAAACACAT+GGG + chr5_1:33507738-33507757 Msa0728620:intron 40.0%
AACCCATGTGTTTGGATTGA+GGG - chr5_1:33507743-33507762 None:intergenic 40.0%
! AAACACATGGGTTGAACAGA+GGG + chr5_1:33507750-33507769 Msa0728620:intron 40.0%
ATAGAGGAGTTTCTTTGTGG+TGG + chr5_1:33507789-33507808 Msa0728620:intron 40.0%
TTCGGATCCTATATTGTCGA+AGG + chr5_1:33507911-33507930 Msa0728620:intron 40.0%
ATCCTATATTGTCGAAGGCT+TGG + chr5_1:33507916-33507935 Msa0728620:intron 40.0%
ACGGATAACCTTTCCAAAAG+AGG + chr5_1:33508005-33508024 Msa0728620:intron 40.0%
! TTGATCCAACACTCCTCTTT+TGG - chr5_1:33508021-33508040 None:intergenic 40.0%
!!! TTCGTGTGTCCTTTGTTTTC+AGG + chr5_1:33508098-33508117 Msa0728620:intron 40.0%
!!! GTCCTTTGTTTTCAGGTTTG+TGG + chr5_1:33508105-33508124 Msa0728620:intron 40.0%
CATCACGTGTTAGTGTGATT+TGG + chr5_1:33508231-33508250 Msa0728620:five_prime_UTR 40.0%
!! TGATTTGGTTTGCGTGTGTT+TGG + chr5_1:33508246-33508265 Msa0728620:five_prime_UTR 40.0%
!! TTGCGTGTGTTTGGTGTATA+TGG + chr5_1:33508255-33508274 Msa0728620:five_prime_UTR 40.0%
AAAATTGGTGGAGGAAGTGA+AGG + chr5_1:33508325-33508344 Msa0728620:five_prime_UTR 40.0%
TTCTGGTGGTATGTATCTGT+TGG + chr5_1:33508472-33508491 Msa0728620:five_prime_UTR 40.0%
TCTGGTGGTATGTATCTGTT+GGG + chr5_1:33508473-33508492 Msa0728620:five_prime_UTR 40.0%
!!! TGGGTTTGTTTTAGAAGCCT+TGG + chr5_1:33508492-33508511 Msa0728620:five_prime_UTR 40.0%
AGTTGGCTGTTTAGCATATG+TGG + chr5_1:33508592-33508611 Msa0728620:five_prime_UTR 40.0%
CTGTTTAGCATATGTGGCAA+TGG + chr5_1:33508598-33508617 Msa0728620:five_prime_UTR 40.0%
! TTGTTAGGCTTTGTGGTTTG+GGG + chr5_1:33508805-33508824 Msa0728620:intron 40.0%
! GAGATTTGGAACTGTGATTC+AGG + chr5_1:33508827-33508846 Msa0728620:intron 40.0%
CATTAGTGAACTACTTGGGT+TGG + chr5_1:33509170-33509189 Msa0728620:intron 40.0%
GTACATAAGGTGAGACTTTG+AGG - chr5_1:33509228-33509247 None:intergenic 40.0%
AAATGTCCTCAAAGCCAATG+GGG + chr5_1:33509375-33509394 Msa0728620:intron 40.0%
CAAACACCAAATGATGTGCA+GGG + chr5_1:33509787-33509806 Msa0728620:CDS 40.0%
AAACACCAAATGATGTGCAG+GGG + chr5_1:33509788-33509807 Msa0728620:CDS 40.0%
CTACATTAACACTTTCCCAC+CGG + chr5_1:33509867-33509886 Msa0728620:CDS 40.0%
! CTGAATGGTTCGGGAATATT+AGG - chr5_1:33509916-33509935 None:intergenic 40.0%
CTAATATTCCCGAACCATTC+AGG + chr5_1:33509914-33509933 Msa0728620:CDS 40.0%
TGTCACGATAATTGGTCGTA+TGG + chr5_1:33510089-33510108 Msa0728620:CDS 40.0%
CTCAAACCTCATTCTGATTC+TGG + chr5_1:33510225-33510244 Msa0728620:intron 40.0%
GACTTGGAGAAGGATAGTAA+GGG - chr5_1:33510253-33510272 None:intergenic 40.0%
! TGACTTGGAGAAGGATAGTA+AGG - chr5_1:33510254-33510273 None:intergenic 40.0%
GGCCTTCAAATCAGAAAAGA+TGG + chr5_1:33510285-33510304 Msa0728620:intron 40.0%
! GATGCTTTTGTCGTCAACAT+TGG + chr5_1:33510336-33510355 Msa0728620:intron 40.0%
TTGCTCGATGTTCAATGCTT+CGG - chr5_1:33510679-33510698 None:intergenic 40.0%
CTTTCAGCAGTAATAAGGTC+TGG - chr5_1:33510779-33510798 None:intergenic 40.0%
CAGGTCTTTCAGCAGTAATA+AGG - chr5_1:33510784-33510803 None:intergenic 40.0%
AGGGCAGTTGATTACCTTAA+TGG + chr5_1:33510821-33510840 Msa0728620:CDS 40.0%
CACGTGACATGAATCCATTA+AGG - chr5_1:33510838-33510857 None:intergenic 40.0%
! ATCCCGCTATAGCATTTTTG+GGG - chr5_1:33511081-33511100 None:intergenic 40.0%
! CTATCCCGCTATAGCATTTT+TGG - chr5_1:33511083-33511102 None:intergenic 40.0%
CACACCAGAGTAGTTAATAG+CGG - chr5_1:33511655-33511674 None:intergenic 40.0%
TCAATTTACCCGTGCAATCT+AGG - chr5_1:33511691-33511710 None:intergenic 40.0%
TATGAAGGGAACCTCTCTCT+TGG + chr5_1:33507040-33507059 Msa0728620:five_prime_UTR 45.0%
AGGTCGATAACAGGAACTTG+TGG - chr5_1:33507170-33507189 None:intergenic 45.0%
!! AATTTTGACCATGCCTGCAG+AGG + chr5_1:33507227-33507246 Msa0728620:five_prime_UTR 45.0%
GTTTGGATTGAGGGTTTAGG+AGG + chr5_1:33507522-33507541 Msa0728620:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG + chr5_1:33507524-33507543 Msa0728620:intron 45.0%
TTGGATTGAGGGTTTAGGAG+GGG - chr5_1:33507524-33507543 None:intergenic 45.0%
GTTTGGATTGAGGGTTTAGG+AGG - chr5_1:33507522-33507541 None:intergenic 45.0%
CAACCCATGTGTTTGGATTG+AGG - chr5_1:33507744-33507763 None:intergenic 45.0%
CTCTGTTCAACCCATGTGTT+TGG - chr5_1:33507751-33507770 None:intergenic 45.0%
! CAAACACATGGGTTGAACAG+AGG + chr5_1:33507749-33507768 Msa0728620:intron 45.0%
!! CAACATAGATTTTGGGGGAG+TGG + chr5_1:33507823-33507842 Msa0728620:intron 45.0%
TGCCAAGCCTTCGACAATAT+AGG - chr5_1:33507921-33507940 None:intergenic 45.0%
GTCGAAGGCTTGGCATAAAT+CGG + chr5_1:33507926-33507945 Msa0728620:intron 45.0%
!! CCAACACTCCTCTTTTGGAA+AGG - chr5_1:33508016-33508035 None:intergenic 45.0%
! CCTTTCCAAAAGAGGAGTGT+TGG + chr5_1:33508013-33508032 Msa0728620:intron 45.0%
ATTTAGTGCGTAGGGGATTG+CGG + chr5_1:33508047-33508066 Msa0728620:intron 45.0%
! TTAATGGCTTGGGATATCGG+CGG + chr5_1:33508139-33508158 Msa0728620:five_prime_UTR 45.0%
! TCGGCGGCTTTTCAAAATGA+AGG + chr5_1:33508155-33508174 Msa0728620:five_prime_UTR 45.0%
AACATTGGTGTGTGAATCCG+AGG + chr5_1:33508402-33508421 Msa0728620:five_prime_UTR 45.0%
ACATTGGTGTGTGAATCCGA+GGG + chr5_1:33508403-33508422 Msa0728620:five_prime_UTR 45.0%
TTGAGTAGCTGTTCCTGTTG+CGG + chr5_1:33508565-33508584 Msa0728620:five_prime_UTR 45.0%
! CTTTGTGGTTTGGGGAGATT+TGG + chr5_1:33508813-33508832 Msa0728620:intron 45.0%
TGGAACTGTGATTCAGGTGT+TGG + chr5_1:33508833-33508852 Msa0728620:intron 45.0%
ATCCTAGTACACCTTGTGCT+TGG + chr5_1:33508909-33508928 Msa0728620:intron 45.0%
AACCAAGCACAAGGTGTACT+AGG - chr5_1:33508914-33508933 None:intergenic 45.0%
! CATAAGGTGAGACTTTGAGG+AGG - chr5_1:33509225-33509244 None:intergenic 45.0%
TTGAGTATGTGTCGGACACT+AGG - chr5_1:33509286-33509305 None:intergenic 45.0%
CTCAAATAAACACACACGGG+AGG + chr5_1:33509301-33509320 Msa0728620:intron 45.0%
AATGTCCTCAAAGCCAATGG+GGG + chr5_1:33509376-33509395 Msa0728620:intron 45.0%
GCAAACACCAAATGATGTGC+AGG + chr5_1:33509786-33509805 Msa0728620:CDS 45.0%
TTGAGTCCAATGACATGCTC+TGG - chr5_1:33510210-33510229 None:intergenic 45.0%
!! CCACTTCATTGACTTGGAGA+AGG - chr5_1:33510263-33510282 None:intergenic 45.0%
CCTTCTCCAAGTCAATGAAG+TGG + chr5_1:33510260-33510279 Msa0728620:intron 45.0%
CTCCAAGTCAATGAAGTGGA+AGG + chr5_1:33510264-33510283 Msa0728620:intron 45.0%
!! ACGACAAAAGCATCAGAGAG+GGG - chr5_1:33510330-33510349 None:intergenic 45.0%
!! GACGACAAAAGCATCAGAGA+GGG - chr5_1:33510331-33510350 None:intergenic 45.0%
!! TGACGACAAAAGCATCAGAG+AGG - chr5_1:33510332-33510351 None:intergenic 45.0%
CGTCAACATTGGAGACATGT+TGG + chr5_1:33510347-33510366 Msa0728620:intron 45.0%
CAACATTGGAGACATGTTGG+AGG + chr5_1:33510350-33510369 Msa0728620:intron 45.0%
GCAGTAATAAGGTCTGGTGT+TGG - chr5_1:33510773-33510792 None:intergenic 45.0%
TTCATGTCACGTGAGCTACA+AGG + chr5_1:33510845-33510864 Msa0728620:CDS 45.0%
TCATGTCACGTGAGCTACAA+GGG + chr5_1:33510846-33510865 Msa0728620:CDS 45.0%
!!! CGCTATAGCATTTTTGGGGT+CGG - chr5_1:33511077-33511096 None:intergenic 45.0%
CGACCCCAAAAATGCTATAG+CGG + chr5_1:33511075-33511094 Msa0728620:intron 45.0%
GACCCCAAAAATGCTATAGC+GGG + chr5_1:33511076-33511095 Msa0728620:intron 45.0%
AAAACCGCTATGCAGTGTTG+CGG + chr5_1:33511530-33511549 Msa0728620:intron 45.0%
TATCTCATAACGCTACGCCA+TGG + chr5_1:33511568-33511587 Msa0728620:intron 45.0%
AGTTAATAGCGGCGCTATAG+CGG - chr5_1:33511644-33511663 None:intergenic 45.0%
CGCTATTAACTACTCTGGTG+TGG + chr5_1:33511653-33511672 Msa0728620:intron 45.0%
!! ACTACTCTGGTGTGGATTAG+TGG + chr5_1:33511661-33511680 Msa0728620:intron 45.0%
AGTGGATGACCTAGATTGCA+CGG + chr5_1:33511679-33511698 Msa0728620:three_prime_UTR 45.0%
!!! TAAAAAAAAAAAAACTATTT+TGG + chr5_1:33508966-33508985 Msa0728620:intron 5.0%
!!! AAAAAAAAAAAAACTATTTT+GGG + chr5_1:33508967-33508986 Msa0728620:intron 5.0%
!! AAAAAAAATAAATTCAAAAA+AGG + chr5_1:33509043-33509062 Msa0728620:intron 5.0%
!! AAAAAAATAAATTCAAAAAA+GGG + chr5_1:33509044-33509063 Msa0728620:intron 5.0%
! CCAGTCCCAATCGTTTTGTC+CGG - chr5_1:33506999-33507018 None:intergenic 50.0%
AACGGAAGGAACCAAGAGAG+AGG - chr5_1:33507054-33507073 None:intergenic 50.0%
GGTTCCTTCCGTTCAAGAGT+TGG + chr5_1:33507061-33507080 Msa0728620:five_prime_UTR 50.0%
ATTGAGGGTTTAGGAGGGGA+AGG + chr5_1:33507528-33507547 Msa0728620:intron 50.0%
TTGAGGGTTTAGGAGGGGAA+GGG + chr5_1:33507529-33507548 Msa0728620:intron 50.0%
ATTGAGGGTTTAGGAGGGGA+GGG - chr5_1:33507528-33507547 None:intergenic 50.0%
GCAATCCCCTACGCACTAAA+TGG - chr5_1:33508048-33508067 None:intergenic 50.0%
TTTAGTGCGTAGGGGATTGC+GGG + chr5_1:33508048-33508067 Msa0728620:intron 50.0%
GGATTGCGGGAGTGAAGAAT+CGG + chr5_1:33508061-33508080 Msa0728620:intron 50.0%
! TGTGAATCCGAGGGCTTGTT+TGG + chr5_1:33508412-33508431 Msa0728620:five_prime_UTR 50.0%
! GTGAATCCGAGGGCTTGTTT+GGG + chr5_1:33508413-33508432 Msa0728620:five_prime_UTR 50.0%
ATGTCTCCCAAACAAGCCCT+CGG - chr5_1:33508422-33508441 None:intergenic 50.0%
GTTCCTGTTGCGGCATAAGT+TGG + chr5_1:33508575-33508594 Msa0728620:five_prime_UTR 50.0%
!! GTGAACTACTTGGGTTGGTC+CGG + chr5_1:33509175-33509194 Msa0728620:intron 50.0%
TAAACACACACGGGAGGAAG+AGG + chr5_1:33509307-33509326 Msa0728620:intron 50.0%
AGGAAGAGGAGGAGGAAATG+TGG + chr5_1:33509321-33509340 Msa0728620:intron 50.0%
AGGAGGAAATGTGGTGACCT+CGG + chr5_1:33509330-33509349 Msa0728620:intron 50.0%
!! TTCATCCCCCATTGGCTTTG+AGG - chr5_1:33509384-33509403 None:intergenic 50.0%
CCAAACCCCTGCACATCATT+TGG - chr5_1:33509796-33509815 None:intergenic 50.0%
CCAAATGATGTGCAGGGGTT+TGG + chr5_1:33509793-33509812 Msa0728620:CDS 50.0%
TCCAATGACATGCTCTGGCT+GGG - chr5_1:33510205-33510224 None:intergenic 50.0%
! AGGGCACCAGAATCAGAATG+AGG - chr5_1:33510234-33510253 None:intergenic 50.0%
! GGCCTTCCACTTCATTGACT+TGG - chr5_1:33510269-33510288 None:intergenic 50.0%
GAAATAGCGGTCATAGCGCT+AGG - chr5_1:33511108-33511127 None:intergenic 50.0%
! ATGAGATAGCGGCGCAATAG+CGG - chr5_1:33511556-33511575 None:intergenic 50.0%
GGCGTAGCGTTATGAGATAG+CGG - chr5_1:33511567-33511586 None:intergenic 50.0%
CGCCATGGCTTATTGCATAG+CGG + chr5_1:33511583-33511602 Msa0728620:intron 50.0%
GACCGCTATGCAATAAGCCA+TGG - chr5_1:33511588-33511607 None:intergenic 50.0%
TGGCTTATTGCATAGCGGTC+CGG + chr5_1:33511588-33511607 Msa0728620:intron 50.0%
AGCGCCGCTATTAACTACTC+TGG + chr5_1:33511648-33511667 Msa0728620:intron 50.0%
GTGGATGACCTAGATTGCAC+GGG + chr5_1:33511680-33511699 Msa0728620:three_prime_UTR 50.0%
CCGGACAAAACGATTGGGAC+TGG + chr5_1:33506996-33507015 Msa0728620:five_prime_UTR 55.0%
AAAGAAACCCCAGCCTCTGC+AGG - chr5_1:33507243-33507262 None:intergenic 55.0%
CAGAGGCTGGGGTTTCTTTC+AGG + chr5_1:33507244-33507263 Msa0728620:five_prime_UTR 55.0%
TTGAGGGTTTAGGAGGGGAG+GGG - chr5_1:33507727-33507746 None:intergenic 55.0%
GATTGAGGGTTTAGGAGGGG+AGG - chr5_1:33507527-33507546 None:intergenic 55.0%
! GGGCTTGTTTGGGAGACATG+AGG + chr5_1:33508423-33508442 Msa0728620:five_prime_UTR 55.0%
CAGCCAACTTATGCCGCAAC+AGG - chr5_1:33508581-33508600 None:intergenic 55.0%
!! AACTACTTGGGTTGGTCCGG+TGG + chr5_1:33509178-33509197 Msa0728620:intron 55.0%
ACACTTTCCCACCGGATGCA+AGG + chr5_1:33509875-33509894 Msa0728620:CDS 55.0%
AGACGTGGATGCCTTGCATC+CGG - chr5_1:33509889-33509908 None:intergenic 55.0%
CCAATGACATGCTCTGGCTG+GGG - chr5_1:33510204-33510223 None:intergenic 55.0%
GTCCAATGACATGCTCTGGC+TGG - chr5_1:33510206-33510225 None:intergenic 55.0%
GCATCAGAGAGGGGCTTGAT+AGG - chr5_1:33510321-33510340 None:intergenic 55.0%
TTGACCATGCCTGCAGAGGC+TGG + chr5_1:33507231-33507250 Msa0728620:five_prime_UTR 60.0%
TGACCATGCCTGCAGAGGCT+GGG + chr5_1:33507232-33507251 Msa0728620:five_prime_UTR 60.0%
AGGGTTTAGGAGGGGAAGGG+AGG + chr5_1:33507532-33507551 Msa0728620:intron 60.0%
GGGTTTAGGAGGGGAAGGGA+GGG + chr5_1:33507533-33507552 Msa0728620:intron 60.0%
GGTTTAGGAGGGGAAGGGAG+GGG + chr5_1:33507534-33507553 Msa0728620:intron 60.0%
GGTTTAGGAGGGGAGGGGAA+GGG - chr5_1:33507722-33507741 None:intergenic 60.0%
ACACACACGGGAGGAAGAGG+AGG + chr5_1:33509310-33509329 Msa0728620:intron 60.0%
GTGGATGCCTTGCATCCGGT+GGG - chr5_1:33509885-33509904 None:intergenic 60.0%
ATGCTCTGGCTGGGGACATG+GGG - chr5_1:33510196-33510215 None:intergenic 60.0%
CATGCTCTGGCTGGGGACAT+GGG - chr5_1:33510197-33510216 None:intergenic 60.0%
ACATGCTCTGGCTGGGGACA+TGG - chr5_1:33510198-33510217 None:intergenic 60.0%
CCCCAGCCAGAGCATGTCAT+TGG + chr5_1:33510201-33510220 Msa0728620:intron 60.0%
GGCGCTATAGCGGCCAATAG+CGG - chr5_1:33511634-33511653 None:intergenic 60.0%
GACCATGCCTGCAGAGGCTG+GGG + chr5_1:33507233-33507252 Msa0728620:five_prime_UTR 65.0%
AACCCCAGCCTCTGCAGGCA+TGG - chr5_1:33507238-33507257 None:intergenic 65.0%
TTAGGAGGGGAAGGGAGGGG+AGG + chr5_1:33507537-33507556 Msa0728620:intron 65.0%
TAGGAGGGGAAGGGAGGGGA+GGG + chr5_1:33507538-33507557 Msa0728620:intron 65.0%
TAGGAGGGGAGGGGAAGGGA+GGG - chr5_1:33507718-33507737 None:intergenic 65.0%
TTAGGAGGGGAGGGGAAGGG+AGG - chr5_1:33507719-33507738 None:intergenic 65.0%
GGGTTTAGGAGGGGAGGGGA+AGG - chr5_1:33507723-33507742 None:intergenic 65.0%
CACACGGGAGGAAGAGGAGG+AGG + chr5_1:33509313-33509332 Msa0728620:intron 65.0%
CGTGGATGCCTTGCATCCGG+TGG - chr5_1:33509886-33509905 None:intergenic 65.0%
TGCTCTGGCTGGGGACATGG+GGG - chr5_1:33510195-33510214 None:intergenic 65.0%
! TAGCGGATAGCGGCGCGTAG+CGG + chr5_1:33511051-33511070 Msa0728620:intron 65.0%
GCGGCCGCAACACTGCATAG+CGG - chr5_1:33511537-33511556 None:intergenic 65.0%
CCAATAGCGGCCGCGCGGTG+CGG - chr5_1:33511621-33511640 None:intergenic 75.0%
AGCGGCCAATAGCGGCCGCG+CGG - chr5_1:33511626-33511645 None:intergenic 75.0%
! CGCGCGGTGCGGTGCGGTAC+CGG - chr5_1:33511610-33511629 None:intergenic 80.0%
! CGGTACCGCACCGCACCGCG+CGG + chr5_1:33511608-33511627 Msa0728620:intron 80.0%
! CCGCACCGCGCGGCCGCTAT+TGG + chr5_1:33511618-33511637 Msa0728620:intron 80.0%
! AGCGGCCGCGCGGTGCGGTG+CGG - chr5_1:33511616-33511635 None:intergenic 85.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 33506945 33511784 33506945 ID=Msa0728620;Name=Msa0728620
chr5_1 mRNA 33506945 33511784 33506945 ID=Msa0728620-mRNA-1;Parent=Msa0728620;Name=Msa0728620-mRNA-1;_AED=0.34;_eAED=0.34;_QI=946|0.8|0.83|1|0.6|0.5|6|229|188
chr5_1 exon 33506945 33507265 33506945 ID=Msa0728620-mRNA-1:exon:10702;Parent=Msa0728620-mRNA-1
chr5_1 exon 33508120 33508705 33508120 ID=Msa0728620-mRNA-1:exon:10703;Parent=Msa0728620-mRNA-1
chr5_1 exon 33509688 33509935 33509688 ID=Msa0728620-mRNA-1:exon:10704;Parent=Msa0728620-mRNA-1
chr5_1 exon 33510047 33510143 33510047 ID=Msa0728620-mRNA-1:exon:10705;Parent=Msa0728620-mRNA-1
chr5_1 exon 33510656 33511030 33510656 ID=Msa0728620-mRNA-1:exon:10706;Parent=Msa0728620-mRNA-1
chr5_1 exon 33511670 33511784 33511670 ID=Msa0728620-mRNA-1:exon:10707;Parent=Msa0728620-mRNA-1
chr5_1 five_prime_UTR 33506945 33507265 33506945 ID=Msa0728620-mRNA-1:five_prime_utr;Parent=Msa0728620-mRNA-1
chr5_1 five_prime_UTR 33508120 33508705 33508120 ID=Msa0728620-mRNA-1:five_prime_utr;Parent=Msa0728620-mRNA-1
chr5_1 five_prime_UTR 33509688 33509726 33509688 ID=Msa0728620-mRNA-1:five_prime_utr;Parent=Msa0728620-mRNA-1
chr5_1 CDS 33509727 33509935 33509727 ID=Msa0728620-mRNA-1:cds;Parent=Msa0728620-mRNA-1
chr5_1 CDS 33510047 33510143 33510047 ID=Msa0728620-mRNA-1:cds;Parent=Msa0728620-mRNA-1
chr5_1 CDS 33510656 33510916 33510656 ID=Msa0728620-mRNA-1:cds;Parent=Msa0728620-mRNA-1
chr5_1 three_prime_UTR 33510917 33511030 33510917 ID=Msa0728620-mRNA-1:three_prime_utr;Parent=Msa0728620-mRNA-1
chr5_1 three_prime_UTR 33511670 33511784 33511670 ID=Msa0728620-mRNA-1:three_prime_utr;Parent=Msa0728620-mRNA-1
Gene Sequence

>Msa0728620

ATGAAGACAGGTGTTGAACAATTTCTCAAACTTCCAATGGAAGAGAAGAAGAAATTTTGGCAAACACCAAATGATGTGCAGGGGTTTGGTCAGTTGTTTGTTGTATCTAATGAACAGAAGCTAGAATGGGCAGACATGTTCTACATTAACACTTTCCCACCGGATGCAAGGCATCCACGTCTAATTCCTAATATTCCCGAACCATTCAGAGATCATCTAGAGAGTTATTGTTTAGAATTGAAAAAACTAGCTGTCACGATAATTGGTCGTATGGAGAAAGCTCTAAAGATAAAAAGCAACGAACTAATATTAACTAACGGAATTTACCGAAGCATTGAACATCGAGCAACAATCAATTCAATGAATGAGAGGATATCAATTGCCACATTTCATAGGACTCAAATGAGCAAAATTCTAGGTCCAACACCAGACCTTATTACTGCTGAAAGACCTGCTTTGTTCAAAAGAATTAGGGCAGTTGATTACCTTAATGGATTCATGTCACGTGAGCTACAAGGGAAATCATGCATAGATGTTGTAAGGATTCAAAATGATATTGGTAAATAA
Protein sequence

>Msa0728620

MKTGVEQFLKLPMEEKKKFWQTPNDVQGFGQLFVVSNEQKLEWADMFYINTFPPDARHPRLIPNIPEPFRDHLESYCLELKKLAVTIIGRMEKALKIKSNELILTNGIYRSIEHRATINSMNERISIATFHRTQMSKILGPTPDLITAERPALFKRIRAVDYLNGFMSRELQGKSCIDVVRIQNDIGK*