AlfalfaGEDB | Msa0812760

M. sativa cultivar zhongmu-4 / Msa0812760

KEGG: K08237
GO: GO:0001101 GO:0003674 GO:0003824 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006950 GO:0008150 GO:0008152 GO:0008194 GO:0009414 GO:0009415 GO:0009628 GO:0009687 GO:0009819 GO:0009987 GO:0010029 GO:0010030 GO:0010035 GO:0010294 GO:0016740 GO:0016757 GO:0016758 GO:0019752 GO:0032787 GO:0035251 GO:0042221 GO:0042592 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043288 GO:0043436 GO:0044237 GO:0044238 GO:0044255 GO:0044281 GO:0044424 GO:0044444 GO:0044464 GO:0046527 GO:0048518 GO:0048580 GO:0048582 GO:0048878 GO:0050789 GO:0050793 GO:0050801 GO:0050896 GO:0051094 GO:0051239 GO:0051240 GO:0055081 GO:0055088 GO:0065007 GO:0065008 GO:0071704 GO:0080043 GO:0080044 GO:0080045 GO:1900140 GO:1901615 GO:1901700 GO:1902265 GO:1902644 GO:2000026
PFAM: PF00201.21

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0812760	XP_003615613.1	96.667	270	9	0	2	271	196	465	0.0	542

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0812760	sp\|D3UAG2\|U71K2_PYRCO	57.895	285	102	6	2	271	196	477	2.66e-108	324

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0812760	Q5IFH7	96.667	270	9	0	2	271	196	465	0.0	542

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006700	Msa0812760	0.807980	3.878006e-50	-8.615850e-47
Msa0011720	Msa0812760	0.801892	7.267105e-49	-8.615850e-47
Msa0039330	Msa0812760	0.820471	6.741054e-53	-8.615850e-47
Msa0044710	Msa0812760	0.821162	4.674682e-53	-8.615850e-47
Msa0050760	Msa0812760	0.815621	8.417964e-52	-8.615850e-47
Msa0054730	Msa0812760	-0.817339	3.472060e-52	-8.615850e-47
Msa0071550	Msa0812760	0.809253	2.073429e-50	-8.615850e-47
Msa0071910	Msa0812760	-0.804083	2.561373e-49	-8.615850e-47
Msa0077390	Msa0812760	0.837682	4.501290e-57	-8.615850e-47
Msa0094100	Msa0812760	0.809107	2.228029e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0812760	MtrunA17_Chr5g0429711	96.667	270	9	0	2	271	196	465	0.0	542
Msa0812760	MtrunA17_Chr5g0429681	79.137	278	47	3	2	271	229	503	8.83e-158	448
Msa0812760	MtrunA17_Chr2g0302961	46.809	282	122	7	5	268	195	466	1.13e-87	268
Msa0812760	MtrunA17_Chr2g0302991	45.936	283	125	7	4	268	191	463	1.62e-86	265
Msa0812760	MtrunA17_Chr5g0442521	42.014	288	134	7	8	269	197	477	4.08e-71	226
Msa0812760	MtrunA17_Chr5g0442561	44.203	276	125	7	15	267	203	472	7.36e-71	225
Msa0812760	MtrunA17_Chr5g0448521	44.928	276	125	6	15	267	196	467	9.78e-71	225
Msa0812760	MtrunA17_Chr5g0442491	42.958	284	131	8	8	267	198	474	6.37e-70	223
Msa0812760	MtrunA17_Chr5g0442581	43.463	283	133	6	8	267	198	476	8.06e-70	224
Msa0812760	MtrunA17_Chr5g0442541	44.014	284	128	8	8	267	189	465	6.41e-69	220

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0812760	AT1G07260.1	49.638	276	128	5	4	271	203	475	7.35e-95	287
Msa0812760	AT2G29730.1	51.095	274	125	6	1	269	195	464	2.44e-91	278
Msa0812760	AT2G29740.1	49.630	270	123	5	4	265	208	472	3.45e-89	273
Msa0812760	AT1G07250.1	50.183	273	122	6	4	267	205	472	1.28e-88	271
Msa0812760	AT2G29710.1	49.275	276	130	6	1	270	194	465	1.18e-86	266
Msa0812760	AT1G07240.1	47.312	279	131	6	5	271	205	479	2.50e-84	260
Msa0812760	AT3G21760.1	47.331	281	122	7	9	268	206	481	1.41e-80	251
Msa0812760	AT2G29750.1	45.818	275	135	6	1	267	205	473	2.25e-77	243
Msa0812760	AT3G21800.1	45.390	282	128	6	8	268	200	476	3.96e-75	237
Msa0812760	AT3G21750.1	45.357	280	122	7	12	267	196	468	1.52e-74	235

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Find 59 sgRNAs with CRISPR-Local

Find 808 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAACTTATTGATGATATTAC+AGG	0.328977	5_3:+43124037	Msa0812760:CDS
AAAGGACCAACAGCATAGAT+AGG	0.483097	5_3:-43123389	None:intergenic
AAGAGATCAAAGAGATGTCT+AGG	0.510224	5_3:+43123972	Msa0812760:CDS
AAGGAATGGGGTGTAGGTTT+GGG	0.176366	5_3:+43123842	Msa0812760:CDS
AAGGGGTAGTGATGTTGTAG+CGG	0.672107	5_3:+43123883	Msa0812760:CDS
AGAGGTTTAGAGACAGCAAA+GGG	0.506121	5_3:+43123291	Msa0812760:CDS
AGATAGCATTGTGCACAAGA+AGG	0.570738	5_3:+43123946	Msa0812760:CDS
AGATTGTTCCAAATCTGAAA+AGG	0.546266	5_3:-43123327	None:intergenic
AGCATGATCTTATATTGAAA+TGG	0.416804	5_3:+43123456	Msa0812760:CDS
AGCTGTTGTTCTGCATAGAT+AGG	0.425643	5_3:-43123800	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TAAATCAAAACGACGAGAAA+GGG	+	chr5_3:43111731-43111750	Msa0812760:intron	30.0%
AAATGTGAATTTGCAAAGTG+AGG	-	chr5_3:43111899-43111918	None:intergenic	30.0%
AAATGAAAGGCAACAATAAC+AGG	-	chr5_3:43112508-43112527	None:intergenic	30.0%
GTATGATTTATGGGTGTATA+GGG	+	chr5_3:43112591-43112610	Msa0812760:intron	30.0%
TATGATTTATGGGTGTATAG+GGG	+	chr5_3:43112592-43112611	Msa0812760:intron	30.0%
TTCTGTATACATAACCACTA+GGG	-	chr5_3:43112875-43112894	None:intergenic	30.0%
ATTCTGTATACATAACCACT+AGG	-	chr5_3:43112876-43112895	None:intergenic	30.0%
TTGTATTATGTACTCTTGAG+TGG	+	chr5_3:43113011-43113030	Msa0812760:intron	30.0%
TAATGTATGTTTGTGGTCAT+TGG	+	chr5_3:43113219-43113238	Msa0812760:intron	30.0%
ACACATTCTACCAAATTAGT+AGG	+	chr5_3:43113346-43113365	Msa0812760:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_3	gene	43111681	43124069	43111681	ID=Msa0812760;Name=Msa0812760
chr5_3	mRNA	43111681	43124069	43111681	ID=Msa0812760-mRNA-1;Parent=Msa0812760;Name=Msa0812760-mRNA-1;_AED=0.25;_eAED=0.25;_QI=0\|0\|0\|0.5\|1\|1\|2\|0\|271
chr5_3	exon	43111681	43111684	43111681	ID=Msa0812760-mRNA-1:exon:13252;Parent=Msa0812760-mRNA-1
chr5_3	exon	43123258	43124069	43123258	ID=Msa0812760-mRNA-1:exon:13253;Parent=Msa0812760-mRNA-1
chr5_3	CDS	43111681	43111684	43111681	ID=Msa0812760-mRNA-1:cds;Parent=Msa0812760-mRNA-1
chr5_3	CDS	43123258	43124069	43123258	ID=Msa0812760-mRNA-1:cds;Parent=Msa0812760-mRNA-1

Gene Sequence

>Msa0812760

ATGGATGGTGGATATGTTGCTTATTATAAACTAGCTGAGAGGTTTAGAGACAGCAAAGGGGTTATTGTTAATACCTTTTCAGATTTGGAACAATCTTCTATTGATGCATTATATGATTATGATGAAAAAATTCCTCCTATCTATGCTGTTGGTCCTTTGTTAGATCTCAAAGGTCAACCTAACCCTAAATTGGATCAAGCTCAGCATGATCTTATATTGAAATGGCTAGATGAGCAGCCAGATAAATCAGTTGTTTTTCTATGTTTTGGAAGCATGGGAGTTAGCTTTGGTCCCTCTCAAACAAGAGAAATAGCATTAGGACTTAAGCATAGTGGAGTTAGGTTCTTGTGGTCTAACAGTGCAGAGAAAAAAGTGTTTCCAGAAGGGTTTTTAGAATGGATGGAATTAGAAGGTAAGGGAATGATATGTGGATGGGCACCACAAGTTGAGGTTTTGGGACATAAGGCTATTGGTGGATTTGTTTCACATTGTGGATGGAATTCTATTTTGGAAAGTATGTGGTTTGGTGTACCAATATTGACATGGCCTATCTATGCAGAACAACAGCTTAATGCTTTTAGGTTGGTGAAGGAATGGGGTGTAGGTTTGGGGCTGAGAGTGGACTGTAGAAGGGGTAGTGATGTTGTAGCGGCCGAGGAGATTGAGAAAGGATTGAAGGATTTGATGGATAAAGATAGCATTGTGCACAAGAAGGTTCAAGAGATCAAAGAGATGTCTAGGAATGCTGTTGTTGATGGTGGATCTTCTTTAATTTCTGTCGGAAAACTTATTGATGATATTACAGGAAGCAACTGA

Protein sequence

>Msa0812760

MDGGYVAYYKLAERFRDSKGVIVNTFSDLEQSSIDALYDYDEKIPPIYAVGPLLDLKGQPNPKLDQAQHDLILKWLDEQPDKSVVFLCFGSMGVSFGPSQTREIALGLKHSGVRFLWSNSAEKKVFPEGFLEWMELEGKGMICGWAPQVEVLGHKAIGGFVSHCGWNSILESMWFGVPILTWPIYAEQQLNAFRLVKEWGVGLGLRVDCRRGSDVVAAEEIEKGLKDLMDKDSIVHKKVQEIKEMSRNAVVDGGSSLISVGKLIDDITGSN*