Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729970 | XP_003614560.1 | 97.949 | 390 | 8 | 0 | 1 | 390 | 1 | 390 | 0.0 | 793 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729970 | sp|Q65XS5|BC10_ORYSJ | 34.967 | 306 | 148 | 9 | 123 | 381 | 85 | 386 | 1.95e-44 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729970 | G7JZH3 | 97.949 | 390 | 8 | 0 | 1 | 390 | 1 | 390 | 0.0 | 793 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0679810 | Msa0729970 | 0.807910 | 4.013201e-50 | -8.615850e-47 |
| Msa0729970 | Msa0770170 | 0.848493 | 5.919452e-60 | -8.615850e-47 |
| Msa0729970 | Msa0849160 | 0.904069 | 1.802475e-79 | -8.615850e-47 |
| Msa0545290 | Msa0729970 | 0.806449 | 8.183192e-50 | -8.615850e-47 |
| Msa0600890 | Msa0729970 | 0.805818 | 1.110709e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729970 | MtrunA17_Chr5g0423131 | 97.949 | 390 | 8 | 0 | 1 | 390 | 1 | 390 | 0.0 | 793 |
| Msa0729970 | MtrunA17_Chr1g0209531 | 68.542 | 391 | 120 | 2 | 1 | 390 | 5 | 393 | 0.0 | 560 |
| Msa0729970 | MtrunA17_Chr6g0484141 | 54.436 | 417 | 163 | 5 | 1 | 390 | 3 | 419 | 1.56e-162 | 462 |
| Msa0729970 | MtrunA17_Chr5g0394961 | 50.591 | 423 | 174 | 5 | 1 | 390 | 1 | 421 | 1.74e-150 | 432 |
| Msa0729970 | MtrunA17_Chr3g0136091 | 48.655 | 409 | 173 | 7 | 1 | 390 | 3 | 393 | 9.30e-136 | 393 |
| Msa0729970 | MtrunA17_Chr1g0151841 | 50.000 | 346 | 164 | 4 | 39 | 381 | 28 | 367 | 2.97e-126 | 369 |
| Msa0729970 | MtrunA17_Chr2g0276861 | 52.922 | 308 | 143 | 1 | 85 | 390 | 131 | 438 | 7.32e-123 | 362 |
| Msa0729970 | MtrunA17_Chr8g0341461 | 52.787 | 305 | 142 | 2 | 88 | 390 | 109 | 413 | 5.99e-118 | 348 |
| Msa0729970 | MtrunA17_Chr5g0394981 | 64.789 | 213 | 74 | 1 | 179 | 390 | 2 | 214 | 1.22e-102 | 302 |
| Msa0729970 | MtrunA17_Chr4g0073871 | 64.319 | 213 | 75 | 1 | 179 | 390 | 9 | 221 | 1.99e-100 | 297 |
| Msa0729970 | MtrunA17_Chr3g0138871 | 41.875 | 320 | 149 | 7 | 91 | 381 | 60 | 371 | 1.03e-72 | 232 |
| Msa0729970 | MtrunA17_Chr1g0148241 | 39.628 | 323 | 167 | 6 | 86 | 383 | 73 | 392 | 7.73e-70 | 224 |
| Msa0729970 | MtrunA17_Chr4g0071911 | 39.039 | 333 | 165 | 7 | 81 | 383 | 63 | 387 | 1.10e-68 | 221 |
| Msa0729970 | MtrunA17_Chr2g0298501 | 41.754 | 285 | 140 | 5 | 122 | 383 | 105 | 386 | 2.70e-64 | 210 |
| Msa0729970 | MtrunA17_Chr2g0298511 | 39.100 | 289 | 141 | 5 | 122 | 383 | 97 | 377 | 2.90e-64 | 210 |
| Msa0729970 | MtrunA17_Chr2g0289021 | 37.224 | 317 | 154 | 9 | 107 | 381 | 46 | 359 | 6.40e-54 | 182 |
| Msa0729970 | MtrunA17_Chr8g0384601 | 36.842 | 304 | 144 | 9 | 122 | 381 | 55 | 354 | 1.34e-53 | 181 |
| Msa0729970 | MtrunA17_Chr1g0170231 | 37.586 | 290 | 148 | 9 | 122 | 388 | 63 | 342 | 1.55e-45 | 160 |
| Msa0729970 | MtrunA17_Chr3g0137661 | 35.583 | 326 | 190 | 9 | 77 | 388 | 55 | 374 | 1.62e-45 | 160 |
| Msa0729970 | MtrunA17_Chr4g0073881 | 38.278 | 209 | 98 | 6 | 1 | 179 | 1 | 208 | 8.31e-40 | 141 |
| Msa0729970 | MtrunA17_Chr1g0170151 | 39.236 | 288 | 144 | 10 | 122 | 388 | 64 | 341 | 3.71e-39 | 143 |
| Msa0729970 | MtrunA17_Chr2g0322161 | 35.117 | 299 | 150 | 11 | 123 | 388 | 78 | 365 | 4.82e-38 | 140 |
| Msa0729970 | MtrunA17_Chr5g0394971 | 61.628 | 86 | 32 | 1 | 95 | 179 | 1 | 86 | 4.73e-32 | 117 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0729970 | AT1G68390.1 | 64.630 | 311 | 106 | 3 | 84 | 390 | 98 | 408 | 4.58e-154 | 441 |
| Msa0729970 | AT1G10280.1 | 46.717 | 396 | 182 | 6 | 21 | 388 | 16 | 410 | 3.34e-127 | 372 |
| Msa0729970 | AT5G11730.1 | 53.846 | 312 | 142 | 2 | 79 | 388 | 73 | 384 | 1.23e-126 | 370 |
| Msa0729970 | AT1G51770.1 | 52.647 | 340 | 158 | 3 | 53 | 390 | 54 | 392 | 1.53e-126 | 370 |
| Msa0729970 | AT1G73810.1 | 49.510 | 408 | 180 | 8 | 2 | 388 | 14 | 416 | 3.80e-125 | 367 |
| Msa0729970 | AT1G68380.1 | 50.949 | 369 | 167 | 7 | 29 | 390 | 31 | 392 | 1.73e-124 | 365 |
| Msa0729970 | AT5G25970.1 | 51.258 | 318 | 150 | 3 | 76 | 388 | 68 | 385 | 9.50e-120 | 353 |
| Msa0729970 | AT5G25970.2 | 51.258 | 318 | 150 | 3 | 76 | 388 | 68 | 385 | 9.50e-120 | 353 |
| Msa0729970 | AT5G25970.3 | 51.258 | 318 | 150 | 3 | 76 | 388 | 68 | 385 | 9.50e-120 | 353 |
| Msa0729970 | AT3G21310.1 | 48.225 | 338 | 168 | 3 | 53 | 388 | 49 | 381 | 2.04e-118 | 349 |
| Msa0729970 | AT3G21310.3 | 48.225 | 338 | 168 | 3 | 53 | 388 | 49 | 381 | 2.04e-118 | 349 |
| Msa0729970 | AT1G10880.1 | 53.103 | 290 | 134 | 2 | 97 | 385 | 93 | 381 | 8.37e-115 | 340 |
| Msa0729970 | AT1G51770.2 | 47.941 | 340 | 147 | 4 | 53 | 390 | 54 | 365 | 1.73e-109 | 326 |
| Msa0729970 | AT5G16170.1 | 43.236 | 377 | 189 | 4 | 31 | 388 | 37 | 407 | 1.26e-108 | 325 |
| Msa0729970 | AT4G31350.4 | 41.379 | 290 | 147 | 4 | 122 | 390 | 88 | 375 | 7.49e-68 | 219 |
| Msa0729970 | AT4G31350.1 | 41.379 | 290 | 147 | 4 | 122 | 390 | 88 | 375 | 7.49e-68 | 219 |
| Msa0729970 | AT4G31350.2 | 41.379 | 290 | 147 | 4 | 122 | 390 | 88 | 375 | 7.49e-68 | 219 |
| Msa0729970 | AT4G30060.2 | 39.024 | 328 | 161 | 7 | 83 | 381 | 70 | 387 | 1.05e-67 | 219 |
| Msa0729970 | AT4G30060.1 | 39.024 | 328 | 161 | 7 | 83 | 381 | 70 | 387 | 1.05e-67 | 219 |
| Msa0729970 | AT2G19160.2 | 37.764 | 331 | 169 | 7 | 83 | 385 | 67 | 388 | 2.91e-67 | 218 |
| Msa0729970 | AT2G19160.1 | 37.764 | 331 | 169 | 7 | 83 | 385 | 67 | 388 | 2.91e-67 | 218 |
| Msa0729970 | AT4G25870.1 | 39.873 | 316 | 162 | 5 | 95 | 385 | 70 | 382 | 1.67e-66 | 216 |
| Msa0729970 | AT3G21310.2 | 48.558 | 208 | 101 | 2 | 52 | 258 | 48 | 250 | 3.53e-63 | 204 |
| Msa0729970 | AT4G31350.3 | 40.345 | 290 | 145 | 5 | 122 | 390 | 88 | 370 | 6.05e-63 | 206 |
| Msa0729970 | AT5G57270.3 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 7.84e-63 | 206 |
| Msa0729970 | AT5G57270.1 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 7.84e-63 | 206 |
| Msa0729970 | AT5G57270.4 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 7.84e-63 | 206 |
| Msa0729970 | AT5G57270.5 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 7.84e-63 | 206 |
| Msa0729970 | AT5G57270.2 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 7.84e-63 | 206 |
| Msa0729970 | AT5G14550.1 | 36.688 | 308 | 147 | 8 | 119 | 382 | 61 | 364 | 1.13e-54 | 185 |
| Msa0729970 | AT5G14550.3 | 36.688 | 308 | 147 | 8 | 119 | 382 | 61 | 364 | 1.23e-54 | 185 |
| Msa0729970 | AT5G14550.2 | 38.225 | 293 | 141 | 9 | 119 | 380 | 61 | 344 | 4.11e-54 | 182 |
| Msa0729970 | AT1G62305.1 | 36.570 | 309 | 148 | 10 | 115 | 381 | 62 | 364 | 6.16e-52 | 178 |
| Msa0729970 | AT1G11940.1 | 36.392 | 316 | 153 | 11 | 108 | 381 | 61 | 370 | 6.25e-52 | 178 |
| Msa0729970 | AT5G25330.1 | 34.656 | 378 | 206 | 15 | 29 | 388 | 5 | 359 | 7.59e-50 | 172 |
| Msa0729970 | AT5G14550.4 | 38.408 | 289 | 141 | 10 | 119 | 382 | 61 | 337 | 2.95e-48 | 167 |
| Msa0729970 | AT3G52060.1 | 36.101 | 277 | 160 | 8 | 122 | 388 | 74 | 343 | 3.51e-48 | 167 |
| Msa0729970 | AT1G62305.3 | 42.922 | 219 | 98 | 6 | 115 | 311 | 62 | 275 | 5.39e-47 | 163 |
| Msa0729970 | AT1G11940.2 | 45.833 | 192 | 95 | 6 | 108 | 295 | 61 | 247 | 3.93e-45 | 157 |
| Msa0729970 | AT1G62305.2 | 33.333 | 309 | 134 | 10 | 115 | 381 | 62 | 340 | 1.02e-38 | 142 |
| Msa0729970 | AT5G22070.1 | 35.000 | 300 | 150 | 12 | 123 | 388 | 71 | 359 | 1.05e-37 | 140 |
| Msa0729970 | AT4G32290.1 | 35.764 | 288 | 159 | 7 | 123 | 388 | 93 | 376 | 6.44e-35 | 132 |
Find 87 sgRNAs with CRISPR-Local
Find 189 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGGACCTAATGGTAATT+TGG | 0.251097 | 5_1:+38044181 | None:intergenic |
| AATAAATTCACTAACCTTAC+TGG | 0.284629 | 5_1:+38046539 | None:intergenic |
| ATTTAATTAATAAATAATAA+AGG | 0.331278 | 5_1:-38044227 | Msa0729970:three_prime_UTR |
| AAAGGATATTCATCTATCTT+AGG | 0.344852 | 5_1:+38046738 | None:intergenic |
| AATCAAACATGTAAGTATAA+TGG | 0.347050 | 5_1:-38044591 | Msa0729970:CDS |
| CTTTAGTTAGCATTAAGTTT+TGG | 0.349642 | 5_1:-38044725 | Msa0729970:CDS |
| CATAAAGTCCACTTACTTGA+TGG | 0.365680 | 5_1:-38044347 | Msa0729970:three_prime_UTR |
| AAATTCTTCAAAGGGCATAA+AGG | 0.387212 | 5_1:-38046645 | Msa0729970:CDS |
| AGGCTGGAATCGAATACTAT+TGG | 0.391723 | 5_1:+38046858 | None:intergenic |
| GTTTATAAGTGCATGACCTT+TGG | 0.392410 | 5_1:+38044492 | None:intergenic |
| TCTGGTCTCACATATTTAAC+TGG | 0.392835 | 5_1:+38044645 | None:intergenic |
| ATTGTCTGAGTTTGATTGTA+GGG | 0.396055 | 5_1:+38044880 | None:intergenic |
| ATGTTTGTTATTTGTTTGCT+AGG | 0.408942 | 5_1:-38044557 | Msa0729970:CDS |
| ATAATTTATATAGTTGCAAC+TGG | 0.409857 | 5_1:+38044445 | None:intergenic |
| AATAAATAATAAAGGAAAGT+TGG | 0.417002 | 5_1:-38044219 | Msa0729970:three_prime_UTR |
| CATTGTCTGAGTTTGATTGT+AGG | 0.421342 | 5_1:+38044879 | None:intergenic |
| AAACTCAGACAATGGAGAAA+AGG | 0.424464 | 5_1:-38044870 | Msa0729970:CDS |
| AACTTAATGCTAACTAAAGT+TGG | 0.429113 | 5_1:+38044729 | None:intergenic |
| CAAGAAGCGCGTTTGCTAGC+AGG | 0.432228 | 5_1:+38045063 | None:intergenic |
| AATTCTTCAAAGGGCATAAA+GGG | 0.434327 | 5_1:-38046644 | Msa0729970:CDS |
| GAAGTTTGACTTGGGTTGAC+TGG | 0.435516 | 5_1:-38044686 | Msa0729970:CDS |
| GTTTGCTAGCAGGCGACGCT+CGG | 0.437681 | 5_1:+38045073 | None:intergenic |
| AGGGTCTCAGTGGTTTGAAA+TGG | 0.444264 | 5_1:-38044850 | Msa0729970:CDS |
| TGAAAACCGGGTAATATGTT+CGG | 0.445181 | 5_1:+38044796 | None:intergenic |
| AAGTAAACCAAATTACCATT+AGG | 0.450618 | 5_1:-38044188 | Msa0729970:three_prime_UTR |
| AACTCAGACAATGGAGAAAA+GGG | 0.452092 | 5_1:-38044869 | Msa0729970:CDS |
| CGCGTCCAACTGAACTTGCC+TGG | 0.457072 | 5_1:+38044925 | None:intergenic |
| GTGTGATACCACATGCTAGA+AGG | 0.467681 | 5_1:+38046976 | None:intergenic |
| GCTCATGAGGTTTGCTCCAA+AGG | 0.468695 | 5_1:-38044508 | Msa0729970:CDS |
| TATACTGCAGAAAGTAGAAT+GGG | 0.470716 | 5_1:-38045117 | Msa0729970:intron |
| ACTTGGGTTGACTGGTCAAA+GGG | 0.471540 | 5_1:-38044678 | Msa0729970:CDS |
| TGAGTGATGAAGAATTGTTA+TGG | 0.473976 | 5_1:-38046776 | Msa0729970:CDS |
| CTGATATGAGAACAAATCGT+TGG | 0.474721 | 5_1:+38045030 | None:intergenic |
| TTCTCCCACAGAGGAGCTAA+AGG | 0.475340 | 5_1:+38046666 | None:intergenic |
| CATCAAGTCCATCAAGTAAG+TGG | 0.484902 | 5_1:+38044339 | None:intergenic |
| GTGGAGAGTCCTGTGTTTCA+TGG | 0.489177 | 5_1:-38046573 | Msa0729970:CDS |
| AATACTATTGGTTGGCGTAA+CGG | 0.490927 | 5_1:+38046870 | None:intergenic |
| GACTTGGGTTGACTGGTCAA+AGG | 0.498955 | 5_1:-38044679 | Msa0729970:CDS |
| ACTTCAGAACCATTGTAAGA+TGG | 0.502479 | 5_1:+38046594 | None:intergenic |
| TCATATACTTGTAATTTCAA+AGG | 0.504221 | 5_1:-38044265 | Msa0729970:three_prime_UTR |
| AGTGTGGAAGAGGGACCTAA+TGG | 0.504473 | 5_1:+38044173 | None:intergenic |
| CTAGCATGTGGTATCACACT+TGG | 0.505414 | 5_1:-38046972 | Msa0729970:CDS |
| AGCCTCAATGGTAGTCATGA+AGG | 0.515851 | 5_1:-38046840 | Msa0729970:CDS |
| ACCATATAAAAGTGTGGAAG+AGG | 0.516049 | 5_1:+38044163 | None:intergenic |
| CTGTGGGAGAAATTCTTCAA+AGG | 0.518666 | 5_1:-38046654 | Msa0729970:CDS |
| TACAAATAGAAGTTTGACTT+GGG | 0.522087 | 5_1:-38044694 | Msa0729970:CDS |
| CTACGTCATGGCTTACGACC+AGG | 0.528541 | 5_1:-38044943 | Msa0729970:CDS |
| TACGACCAGGCAAGTTCAGT+TGG | 0.529529 | 5_1:-38044930 | Msa0729970:CDS |
| CTCACATATTTAACTGGATG+TGG | 0.530102 | 5_1:+38044651 | None:intergenic |
| TACCTTCTCCTTCTAGCATG+TGG | 0.532227 | 5_1:-38046984 | Msa0729970:CDS |
| ATATACTGCAGAAAGTAGAA+TGG | 0.533092 | 5_1:-38045118 | Msa0729970:intron |
| TTCATGACTACCATTGAGGC+TGG | 0.539090 | 5_1:+38046842 | None:intergenic |
| TGTGGGAGAAATTCTTCAAA+GGG | 0.541413 | 5_1:-38046653 | Msa0729970:CDS |
| ATGAGCCTTGACAATGAAGT+AGG | 0.542080 | 5_1:+38044525 | None:intergenic |
| GTATTCGATTCCAGCCTCAA+TGG | 0.543962 | 5_1:-38046852 | Msa0729970:CDS |
| TGGTAGGAGAATTCCCAGTA+AGG | 0.545755 | 5_1:-38046553 | Msa0729970:intron |
| TCTTGCCTACTTCATTGTCA+AGG | 0.554046 | 5_1:-38044530 | Msa0729970:CDS |
| ATACAAATAGAAGTTTGACT+TGG | 0.556289 | 5_1:-38044695 | Msa0729970:CDS |
| TCCTTTCGATCGAGTTCCGA+AGG | 0.557813 | 5_1:-38046721 | Msa0729970:CDS |
| CTACAATCAAACTCAGACAA+TGG | 0.558283 | 5_1:-38044878 | Msa0729970:CDS |
| ATCCTTCATGACTACCATTG+AGG | 0.559449 | 5_1:+38046838 | None:intergenic |
| ATCTTACAATGGTTCTGAAG+TGG | 0.559601 | 5_1:-38046592 | Msa0729970:CDS |
| CTGTGCCTTTAGCTCCTCTG+TGG | 0.570317 | 5_1:-38046671 | Msa0729970:CDS |
| ATAAATTCACTAACCTTACT+GGG | 0.572297 | 5_1:+38046540 | None:intergenic |
| CTTCATTGTCAAGGCTCATG+AGG | 0.577302 | 5_1:-38044521 | Msa0729970:CDS |
| CACAGAGGAGCTAAAGGCAC+AGG | 0.580595 | 5_1:+38046672 | None:intergenic |
| TGGAATCGAATACTATTGGT+TGG | 0.581530 | 5_1:+38046862 | None:intergenic |
| TTGTCTGAGTTTGATTGTAG+GGG | 0.583557 | 5_1:+38044881 | None:intergenic |
| TGTGCCTTTAGCTCCTCTGT+GGG | 0.584122 | 5_1:-38046670 | Msa0729970:CDS |
| AAATCATGTACAACTTGAGA+TGG | 0.588695 | 5_1:+38046798 | None:intergenic |
| ACCTTCGGAACTCGATCGAA+AGG | 0.595763 | 5_1:+38046720 | None:intergenic |
| AGAGTCCTGTGTTTCATGGT+AGG | 0.601294 | 5_1:-38046569 | Msa0729970:CDS |
| ACTGTTGAGAAGTTGAAGAG+TGG | 0.604831 | 5_1:+38044996 | None:intergenic |
| CAAGTTCAGTTGGACGCGGA+CGG | 0.618278 | 5_1:-38044920 | Msa0729970:CDS |
| CTAGAAGGAGAAGGTAAGTG+AGG | 0.623171 | 5_1:+38046991 | None:intergenic |
| ATCAGACCGAACATATTACC+CGG | 0.623786 | 5_1:-38044802 | Msa0729970:CDS |
| TTTCGATCGAGTTCCGAAGG+TGG | 0.623922 | 5_1:-38046718 | Msa0729970:CDS |
| CCATATAAAAGTGTGGAAGA+GGG | 0.631279 | 5_1:+38044164 | None:intergenic |
| CACTCGAATCCATCTTACAA+TGG | 0.632327 | 5_1:-38046603 | Msa0729970:CDS |
| CAGGCAAGTTCAGTTGGACG+CGG | 0.637111 | 5_1:-38044924 | Msa0729970:CDS |
| TGGGTTGACTGGTCAAAGGG+TGG | 0.638199 | 5_1:-38044675 | Msa0729970:CDS |
| TACCACATGCTAGAAGGAGA+AGG | 0.656558 | 5_1:+38046982 | None:intergenic |
| ATTCTCCTACCATGAAACAC+AGG | 0.661769 | 5_1:+38046564 | None:intergenic |
| TTGAAGAATTTCTCCCACAG+AGG | 0.675216 | 5_1:+38046657 | None:intergenic |
| AATGGAGAAAAGGGTCTCAG+TGG | 0.678248 | 5_1:-38044860 | Msa0729970:CDS |
| AGTTAAATATGTGAGACCAG+AGG | 0.713851 | 5_1:-38044643 | Msa0729970:CDS |
| ATACTGCAGAAAGTAGAATG+GGG | 0.713908 | 5_1:-38045116 | Msa0729970:intron |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | AATATTTTTTAATTATTATA+GGG | + | chr5_1:38045074-38045093 | None:intergenic | 0.0% |
| !! | ATTTAATTAATAAATAATAA+AGG | - | chr5_1:38047012-38047031 | Msa0729970:CDS | 0.0% |
| !! | TTAAATAATTGAAAGAATAA+AGG | - | chr5_1:38045571-38045590 | Msa0729970:intron | 10.0% |
| !!! | TTTTTTTCTATCTTGATATA+TGG | - | chr5_1:38044728-38044747 | Msa0729970:CDS | 15.0% |
| !! | ATAAAAGAACAAATAAAGTA+AGG | - | chr5_1:38044810-38044829 | Msa0729970:CDS | 15.0% |
| !! | AAAAAATATTGAATGTAACT+AGG | - | chr5_1:38045084-38045103 | Msa0729970:CDS | 15.0% |
| !!! | GTTTTTTATATCTTTTCTTT+TGG | + | chr5_1:38045231-38045250 | None:intergenic | 15.0% |
| !!! | AGATATAAAAAACTTTTTTG+AGG | - | chr5_1:38045238-38045257 | Msa0729970:intron | 15.0% |
| !!! | GATATAAAAAACTTTTTTGA+GGG | - | chr5_1:38045239-38045258 | Msa0729970:intron | 15.0% |
| !!! | ATATAAAAAACTTTTTTGAG+GGG | - | chr5_1:38045240-38045259 | Msa0729970:intron | 15.0% |
| !! | AACACTAAAATTTCATTAAA+AGG | + | chr5_1:38045857-38045876 | None:intergenic | 15.0% |
| !!! | TGTTTCAAATCTTAATTTTT+AGG | - | chr5_1:38046030-38046049 | Msa0729970:intron | 15.0% |
| !!! | TAATTCATTCTTTTTTATGT+AGG | - | chr5_1:38046818-38046837 | Msa0729970:CDS | 15.0% |
| !!! | TTTTTTTTGTTGAAAGAAAT+AGG | - | chr5_1:38046949-38046968 | Msa0729970:CDS | 15.0% |
| !! | AATAAATAATAAAGGAAAGT+TGG | - | chr5_1:38047020-38047039 | Msa0729970:CDS | 15.0% |
| !! | TTATGAATGAAAATTGTCAT+TGG | - | chr5_1:38044756-38044775 | Msa0729970:CDS | 20.0% |
| !!! | TTGCAAAAAAACTTGATTTT+AGG | + | chr5_1:38044840-38044859 | None:intergenic | 20.0% |
| !!! | AATTGTTTGATTTGAAAACA+TGG | + | chr5_1:38044871-38044890 | None:intergenic | 20.0% |
| !!! | GTATACACATGTTTTAAATA+TGG | - | chr5_1:38044923-38044942 | Msa0729970:CDS | 20.0% |
| !!! | TATAAAAAACTTTTTTGAGG+GGG | - | chr5_1:38045241-38045260 | Msa0729970:intron | 20.0% |
| !!! | TGCTAATAGTATTTTGAATA+TGG | + | chr5_1:38045507-38045526 | None:intergenic | 20.0% |
| !!! | AAACCATGTATAAATCTTTT+AGG | + | chr5_1:38045621-38045640 | None:intergenic | 20.0% |
| !! | ACTAAAATTTCATTAAAAGG+TGG | + | chr5_1:38045854-38045873 | None:intergenic | 20.0% |
| !! | GAGAAAATTAATTTCCTTTA+TGG | - | chr5_1:38045994-38046013 | Msa0729970:intron | 20.0% |
| !! | AAGTATACAATAAACCATAA+AGG | + | chr5_1:38046011-38046030 | None:intergenic | 20.0% |
| !!! | TACATTTTGAAACAAATTGA+TGG | + | chr5_1:38046083-38046102 | None:intergenic | 20.0% |
| !! | AATCAAACATGTAAGTATAA+TGG | - | chr5_1:38046648-38046667 | Msa0729970:CDS | 20.0% |
| !! | ATAATTTATATAGTTGCAAC+TGG | + | chr5_1:38046797-38046816 | None:intergenic | 20.0% |
| !!! | ACTTGATGAGTTTTTTTAAT+AGG | - | chr5_1:38046915-38046934 | Msa0729970:CDS | 20.0% |
| !! | TCATATACTTGTAATTTCAA+AGG | - | chr5_1:38046974-38046993 | Msa0729970:CDS | 20.0% |
| ! | AAAGGATATTCATCTATCTT+AGG | + | chr5_1:38044504-38044523 | None:intergenic | 25.0% |
| ! | ATAAATTCACTAACCTTACT+GGG | + | chr5_1:38044702-38044721 | None:intergenic | 25.0% |
| ! | AATAAATTCACTAACCTTAC+TGG | + | chr5_1:38044703-38044722 | None:intergenic | 25.0% |
| ! | TAAATTGAATCAAGAGGAAA+AGG | - | chr5_1:38044999-38045018 | Msa0729970:CDS | 25.0% |
| ! | AAATTGAATCAAGAGGAAAA+GGG | - | chr5_1:38045000-38045019 | Msa0729970:CDS | 25.0% |
| ! | TTTCTGTATATAGCATTTCA+TGG | - | chr5_1:38045416-38045435 | Msa0729970:intron | 25.0% |
| !!! | GTATTTTGAATATGGAATAC+TGG | + | chr5_1:38045499-38045518 | None:intergenic | 25.0% |
| ! | ATAGATTATAGTCTTCAACT+AGG | - | chr5_1:38045688-38045707 | Msa0729970:intron | 25.0% |
| !! | TTAATACTGTGCCTTAATTT+TGG | + | chr5_1:38045727-38045746 | None:intergenic | 25.0% |
| !! | CATTGCATTGATAACTAATT+AGG | + | chr5_1:38045814-38045833 | None:intergenic | 25.0% |
| ! | AAATTTCATTAAAAGGTGGT+AGG | + | chr5_1:38045850-38045869 | None:intergenic | 25.0% |
| !!! | ATGAAATTTTAGTGTTGTGT+AGG | - | chr5_1:38045861-38045880 | Msa0729970:intron | 25.0% |
| !!! | TGAAATTTTAGTGTTGTGTA+GGG | - | chr5_1:38045862-38045881 | Msa0729970:intron | 25.0% |
| !! | TTTTCTCATGATCACTAATT+GGG | + | chr5_1:38045981-38046000 | None:intergenic | 25.0% |
| !! | ATTTTCTCATGATCACTAAT+TGG | + | chr5_1:38045982-38046001 | None:intergenic | 25.0% |
| !!! | TTGCAATATTTTCTGAAAAC+CGG | + | chr5_1:38046459-38046478 | None:intergenic | 25.0% |
| !! | GTTTTCAGAAAATATTGCAA+TGG | - | chr5_1:38046459-38046478 | Msa0729970:intron | 25.0% |
| ! | AACTTAATGCTAACTAAAGT+TGG | + | chr5_1:38046513-38046532 | None:intergenic | 25.0% |
| !! | CTTTAGTTAGCATTAAGTTT+TGG | - | chr5_1:38046514-38046533 | Msa0729970:intron | 25.0% |
| ! | ATACAAATAGAAGTTTGACT+TGG | - | chr5_1:38046544-38046563 | Msa0729970:intron | 25.0% |
| !! | TACAAATAGAAGTTTGACTT+GGG | - | chr5_1:38046545-38046564 | Msa0729970:intron | 25.0% |
| !!! | ATGTTTGTTATTTGTTTGCT+AGG | - | chr5_1:38046682-38046701 | Msa0729970:CDS | 25.0% |
| ! | AAGTAAACCAAATTACCATT+AGG | - | chr5_1:38047051-38047070 | Msa0729970:CDS | 25.0% |
| AAATCATGTACAACTTGAGA+TGG | + | chr5_1:38044444-38044463 | None:intergenic | 30.0% | |
| TGAGTGATGAAGAATTGTTA+TGG | - | chr5_1:38044463-38044482 | Msa0729970:three_prime_UTR | 30.0% | |
| ! | AAATTCTTCAAAGGGCATAA+AGG | - | chr5_1:38044594-38044613 | Msa0729970:CDS | 30.0% |
| ! | AATTCTTCAAAGGGCATAAA+GGG | - | chr5_1:38044595-38044614 | Msa0729970:CDS | 30.0% |
| TCCAAGTAAATTGAATCAAG+AGG | - | chr5_1:38044993-38045012 | Msa0729970:CDS | 30.0% | |
| TCCTCTTGATTCAATTTACT+TGG | + | chr5_1:38044997-38045016 | None:intergenic | 30.0% | |
| AATTGAATCAAGAGGAAAAG+GGG | - | chr5_1:38045001-38045020 | Msa0729970:CDS | 30.0% | |
| !! | CTTCATATTGAAAGTGTTTC+CGG | + | chr5_1:38045120-38045139 | None:intergenic | 30.0% |
| ACACTTTCAATATGAAGTGT+CGG | - | chr5_1:38045123-38045142 | Msa0729970:intron | 30.0% | |
| TGGCAAGAATAAAAAAACCT+TGG | + | chr5_1:38045211-38045230 | None:intergenic | 30.0% | |
| GTGCCTAAAAGATTTATACA+TGG | - | chr5_1:38045615-38045634 | Msa0729970:intron | 30.0% | |
| GTTGAAGACTATAATCTATG+AGG | + | chr5_1:38045687-38045706 | None:intergenic | 30.0% | |
| ATTATAGTCTTCAACTAGGT+AGG | - | chr5_1:38045692-38045711 | Msa0729970:intron | 30.0% | |
| ACTCTTTAGACTCTACATAT+TGG | + | chr5_1:38045893-38045912 | None:intergenic | 30.0% | |
| TCTGCAGTATATCAAATGAA+GGG | + | chr5_1:38046113-38046132 | None:intergenic | 30.0% | |
| TTCTGCAGTATATCAAATGA+AGG | + | chr5_1:38046114-38046133 | None:intergenic | 30.0% | |
| ATATACTGCAGAAAGTAGAA+TGG | - | chr5_1:38046121-38046140 | Msa0729970:intron | 30.0% | |
| TATACTGCAGAAAGTAGAAT+GGG | - | chr5_1:38046122-38046141 | Msa0729970:intron | 30.0% | |
| ATTGTCTGAGTTTGATTGTA+GGG | + | chr5_1:38046362-38046381 | None:intergenic | 30.0% | |
| !! | TGCAATATTTTCTGAAAACC+GGG | + | chr5_1:38046458-38046477 | None:intergenic | 30.0% |
| AAAAATTCACAAGTAACCTC+TGG | + | chr5_1:38046615-38046634 | None:intergenic | 30.0% | |
| ! | AGAGGTTACTTGTGAATTTT+TGG | - | chr5_1:38046614-38046633 | Msa0729970:CDS | 30.0% |
| !! | GTGAATTTTTGGAGAATTTG+AGG | - | chr5_1:38046625-38046644 | Msa0729970:CDS | 30.0% |
| ! | AATACTATTGGTTGGCGTAA+CGG | + | chr5_1:38044372-38044391 | None:intergenic | 35.0% |
| TGGAATCGAATACTATTGGT+TGG | + | chr5_1:38044380-38044399 | None:intergenic | 35.0% | |
| TGTGGGAGAAATTCTTCAAA+GGG | - | chr5_1:38044586-38044605 | Msa0729970:CDS | 35.0% | |
| ACTTCAGAACCATTGTAAGA+TGG | + | chr5_1:38044648-38044667 | None:intergenic | 35.0% | |
| !! | ATCTTACAATGGTTCTGAAG+TGG | - | chr5_1:38044647-38044666 | Msa0729970:CDS | 35.0% |
| ATTGAATCAAGAGGAAAAGG+GGG | - | chr5_1:38045002-38045021 | Msa0729970:CDS | 35.0% | |
| AATTAAATGAAGCAGAGCAG+AGG | - | chr5_1:38045027-38045046 | Msa0729970:CDS | 35.0% | |
| ATTAAATGAAGCAGAGCAGA+GGG | - | chr5_1:38045028-38045047 | Msa0729970:CDS | 35.0% | |
| !! | GTGACATGTACGTTTTAAGT+TGG | - | chr5_1:38045147-38045166 | Msa0729970:intron | 35.0% |
| TAAGGTAGTTATGGTCTCAA+TGG | + | chr5_1:38045180-38045199 | None:intergenic | 35.0% | |
| GCACTTAGTTAAGGTAGTTA+TGG | + | chr5_1:38045189-38045208 | None:intergenic | 35.0% | |
| AAAACCTTGGCACTTAGTTA+AGG | + | chr5_1:38045198-38045217 | None:intergenic | 35.0% | |
| TCGCTCATGTGTTATACTAT+TGG | - | chr5_1:38045304-38045323 | Msa0729970:intron | 35.0% | |
| AACTATCCTCTTCCATACTA+CGG | + | chr5_1:38045363-38045382 | None:intergenic | 35.0% | |
| ! | ACTAACATGTGTCCTCTTTT+TGG | + | chr5_1:38045447-38045466 | None:intergenic | 35.0% |
| TGGCAAATGGCAATTTATCT+GGG | + | chr5_1:38045664-38045683 | None:intergenic | 35.0% | |
| ATAATCTATGAGGTGGCAAA+TGG | + | chr5_1:38045677-38045696 | None:intergenic | 35.0% | |
| GAAGACTATAATCTATGAGG+TGG | + | chr5_1:38045684-38045703 | None:intergenic | 35.0% | |
| TTAAGGCACAGTATTAACTG+AGG | - | chr5_1:38045730-38045749 | Msa0729970:intron | 35.0% | |
| ATATGTAGCTGTTGGAAGTT+TGG | - | chr5_1:38045753-38045772 | Msa0729970:intron | 35.0% | |
| AAAGGTGGTAGGAATTTAGA+TGG | + | chr5_1:38045839-38045858 | None:intergenic | 35.0% | |
| !! | AATTTTAGTGTTGTGTAGGG+AGG | - | chr5_1:38045865-38045884 | Msa0729970:intron | 35.0% |
| !! | ATTTTAGTGTTGTGTAGGGA+GGG | - | chr5_1:38045866-38045885 | Msa0729970:intron | 35.0% |
| ATACTGCAGAAAGTAGAATG+GGG | - | chr5_1:38046123-38046142 | Msa0729970:intron | 35.0% | |
| CTGATATGAGAACAAATCGT+TGG | + | chr5_1:38046212-38046231 | None:intergenic | 35.0% | |
| TTGTCTGAGTTTGATTGTAG+GGG | + | chr5_1:38046361-38046380 | None:intergenic | 35.0% | |
| CATTGTCTGAGTTTGATTGT+AGG | + | chr5_1:38046363-38046382 | None:intergenic | 35.0% | |
| CTACAATCAAACTCAGACAA+TGG | - | chr5_1:38046361-38046380 | Msa0729970:intron | 35.0% | |
| AAACTCAGACAATGGAGAAA+AGG | - | chr5_1:38046369-38046388 | Msa0729970:intron | 35.0% | |
| AACTCAGACAATGGAGAAAA+GGG | - | chr5_1:38046370-38046389 | Msa0729970:intron | 35.0% | |
| TGAAAACCGGGTAATATGTT+CGG | + | chr5_1:38046446-38046465 | None:intergenic | 35.0% | |
| CTCACATATTTAACTGGATG+TGG | + | chr5_1:38046591-38046610 | None:intergenic | 35.0% | |
| TCTGGTCTCACATATTTAAC+TGG | + | chr5_1:38046597-38046616 | None:intergenic | 35.0% | |
| AGTTAAATATGTGAGACCAG+AGG | - | chr5_1:38046596-38046615 | Msa0729970:CDS | 35.0% | |
| GTTTATAAGTGCATGACCTT+TGG | + | chr5_1:38046750-38046769 | None:intergenic | 35.0% | |
| CATAAAGTCCACTTACTTGA+TGG | - | chr5_1:38046892-38046911 | Msa0729970:CDS | 35.0% | |
| ! | CCATATAAAAGTGTGGAAGA+GGG | + | chr5_1:38047078-38047097 | None:intergenic | 35.0% |
| AGGCTGGAATCGAATACTAT+TGG | + | chr5_1:38044384-38044403 | None:intergenic | 40.0% | |
| ATCCTTCATGACTACCATTG+AGG | + | chr5_1:38044404-38044423 | None:intergenic | 40.0% | |
| AAGAACAAAAACGCCACCTT+CGG | + | chr5_1:38044537-38044556 | None:intergenic | 40.0% | |
| ! | GCGTTTTTGTTCTTGGTTAG+AGG | - | chr5_1:38044543-38044562 | Msa0729970:CDS | 40.0% |
| TTGAAGAATTTCTCCCACAG+AGG | + | chr5_1:38044585-38044604 | None:intergenic | 40.0% | |
| CTGTGGGAGAAATTCTTCAA+AGG | - | chr5_1:38044585-38044604 | Msa0729970:CDS | 40.0% | |
| CACTCGAATCCATCTTACAA+TGG | - | chr5_1:38044636-38044655 | Msa0729970:CDS | 40.0% | |
| ATTCTCCTACCATGAAACAC+AGG | + | chr5_1:38044678-38044697 | None:intergenic | 40.0% | |
| GTAACTAGGTGAGTTAGTAC+CGG | - | chr5_1:38045098-38045117 | Msa0729970:CDS | 40.0% | |
| GTTATGGTCTCAATGGATCA+TGG | + | chr5_1:38045173-38045192 | None:intergenic | 40.0% | |
| ACTACCTTAACTAAGTGCCA+AGG | - | chr5_1:38045191-38045210 | Msa0729970:intron | 40.0% | |
| ! | CCAGTTGTAAGCTACTTTAG+TGG | + | chr5_1:38045272-38045291 | None:intergenic | 40.0% |
| CCACTAAAGTAGCTTACAAC+TGG | - | chr5_1:38045269-38045288 | Msa0729970:intron | 40.0% | |
| TTCATGGTTCCTCCAAAAAG+AGG | - | chr5_1:38045432-38045451 | Msa0729970:intron | 40.0% | |
| ! | AACATGTGTCCTCTTTTTGG+AGG | + | chr5_1:38045444-38045463 | None:intergenic | 40.0% |
| GTGGCAAATGGCAATTTATC+TGG | + | chr5_1:38045665-38045684 | None:intergenic | 40.0% | |
| GGTCATGAGGACCAAAATTA+AGG | - | chr5_1:38045713-38045732 | Msa0729970:intron | 40.0% | |
| AACTGAGGATATGTAGCTGT+TGG | - | chr5_1:38045745-38045764 | Msa0729970:intron | 40.0% | |
| ATCTCTGGTCTGTTTCATTG+TGG | + | chr5_1:38045925-38045944 | None:intergenic | 40.0% | |
| AGACCAGAGATAGAAAATGC+AGG | - | chr5_1:38045934-38045953 | Msa0729970:intron | 40.0% | |
| GACCAGAGATAGAAAATGCA+GGG | - | chr5_1:38045935-38045954 | Msa0729970:intron | 40.0% | |
| ! | TACCCTGCATTTTCTATCTC+TGG | + | chr5_1:38045940-38045959 | None:intergenic | 40.0% |
| ACTGTTGAGAAGTTGAAGAG+TGG | + | chr5_1:38046246-38046265 | None:intergenic | 40.0% | |
| CTCAACAAAAAGCTACGTCA+TGG | - | chr5_1:38046284-38046303 | Msa0729970:intron | 40.0% | |
| ATCAGACCGAACATATTACC+CGG | - | chr5_1:38046437-38046456 | Msa0729970:intron | 40.0% | |
| TCTTGCCTACTTCATTGTCA+AGG | - | chr5_1:38046709-38046728 | Msa0729970:CDS | 40.0% | |
| ATGAGCCTTGACAATGAAGT+AGG | + | chr5_1:38046717-38046736 | None:intergenic | 40.0% | |
| CATCAAGTCCATCAAGTAAG+TGG | + | chr5_1:38046903-38046922 | None:intergenic | 40.0% | |
| AGAGGGACCTAATGGTAATT+TGG | + | chr5_1:38047061-38047080 | None:intergenic | 40.0% | |
| CTAGAAGGAGAAGGTAAGTG+AGG | + | chr5_1:38044251-38044270 | None:intergenic | 45.0% | |
| TACCTTCTCCTTCTAGCATG+TGG | - | chr5_1:38044255-38044274 | Msa0729970:three_prime_UTR | 45.0% | |
| TACCACATGCTAGAAGGAGA+AGG | + | chr5_1:38044260-38044279 | None:intergenic | 45.0% | |
| GTGTGATACCACATGCTAGA+AGG | + | chr5_1:38044266-38044285 | None:intergenic | 45.0% | |
| CTAGCATGTGGTATCACACT+TGG | - | chr5_1:38044267-38044286 | Msa0729970:three_prime_UTR | 45.0% | |
| GTATTCGATTCCAGCCTCAA+TGG | - | chr5_1:38044387-38044406 | Msa0729970:three_prime_UTR | 45.0% | |
| TTCATGACTACCATTGAGGC+TGG | + | chr5_1:38044400-38044419 | None:intergenic | 45.0% | |
| AGCCTCAATGGTAGTCATGA+AGG | - | chr5_1:38044399-38044418 | Msa0729970:three_prime_UTR | 45.0% | |
| ! | GAAGGTGGCGTTTTTGTTCT+TGG | - | chr5_1:38044536-38044555 | Msa0729970:CDS | 45.0% |
| AGAGTCCTGTGTTTCATGGT+AGG | - | chr5_1:38044670-38044689 | Msa0729970:CDS | 45.0% | |
| TGGTAGGAGAATTCCCAGTA+AGG | - | chr5_1:38044686-38044705 | Msa0729970:CDS | 45.0% | |
| ! | TACTACGGTCATGGTTGGTT+GGG | + | chr5_1:38045348-38045367 | None:intergenic | 45.0% |
| ATACTACGGTCATGGTTGGT+TGG | + | chr5_1:38045349-38045368 | None:intergenic | 45.0% | |
| AACCAACCATGACCGTAGTA+TGG | - | chr5_1:38045348-38045367 | Msa0729970:intron | 45.0% | |
| TTCCATACTACGGTCATGGT+TGG | + | chr5_1:38045353-38045372 | None:intergenic | 45.0% | |
| CTTCAACTAGGTAGGTCATG+AGG | - | chr5_1:38045700-38045719 | Msa0729970:intron | 45.0% | |
| AATGGAGAAAAGGGTCTCAG+TGG | - | chr5_1:38046379-38046398 | Msa0729970:intron | 45.0% | |
| AGGGTCTCAGTGGTTTGAAA+TGG | - | chr5_1:38046389-38046408 | Msa0729970:intron | 45.0% | |
| !! | GAAGTTTGACTTGGGTTGAC+TGG | - | chr5_1:38046553-38046572 | Msa0729970:intron | 45.0% |
| !! | ACTTGGGTTGACTGGTCAAA+GGG | - | chr5_1:38046561-38046580 | Msa0729970:CDS | 45.0% |
| CTTCATTGTCAAGGCTCATG+AGG | - | chr5_1:38046718-38046737 | Msa0729970:CDS | 45.0% | |
| !!! | CAATATTTTTTAATTATTAT+AGG | + | chr5_1:38045075-38045094 | None:intergenic | 5.0% |
| TCCTTTCGATCGAGTTCCGA+AGG | - | chr5_1:38044518-38044537 | Msa0729970:CDS | 50.0% | |
| ACCTTCGGAACTCGATCGAA+AGG | + | chr5_1:38044522-38044541 | None:intergenic | 50.0% | |
| TTTCGATCGAGTTCCGAAGG+TGG | - | chr5_1:38044521-38044540 | Msa0729970:CDS | 50.0% | |
| ! | TGTGCCTTTAGCTCCTCTGT+GGG | - | chr5_1:38044569-38044588 | Msa0729970:CDS | 50.0% |
| TTCTCCCACAGAGGAGCTAA+AGG | + | chr5_1:38044576-38044595 | None:intergenic | 50.0% | |
| GTGGAGAGTCCTGTGTTTCA+TGG | - | chr5_1:38044666-38044685 | Msa0729970:CDS | 50.0% | |
| ! | TTGGTTGGGTGGTTTGTGAG+GGG | + | chr5_1:38045334-38045353 | None:intergenic | 50.0% |
| ! | GTTGGTTGGGTGGTTTGTGA+GGG | + | chr5_1:38045335-38045354 | None:intergenic | 50.0% |
| CCTCTTCCATACTACGGTCA+TGG | + | chr5_1:38045357-38045376 | None:intergenic | 50.0% | |
| CCATGACCGTAGTATGGAAG+AGG | - | chr5_1:38045354-38045373 | Msa0729970:intron | 50.0% | |
| TACGACCAGGCAAGTTCAGT+TGG | - | chr5_1:38046309-38046328 | Msa0729970:intron | 50.0% | |
| !! | GACTTGGGTTGACTGGTCAA+AGG | - | chr5_1:38046560-38046579 | Msa0729970:CDS | 50.0% |
| ! | GCTCATGAGGTTTGCTCCAA+AGG | - | chr5_1:38046731-38046750 | Msa0729970:CDS | 50.0% |
| AGTGTGGAAGAGGGACCTAA+TGG | + | chr5_1:38047069-38047088 | None:intergenic | 50.0% | |
| ! | CACAGAGGAGCTAAAGGCAC+AGG | + | chr5_1:38044570-38044589 | None:intergenic | 55.0% |
| ! | CTGTGCCTTTAGCTCCTCTG+TGG | - | chr5_1:38044568-38044587 | Msa0729970:CDS | 55.0% |
| ! | GGTTGGTTGGGTGGTTTGTG+AGG | + | chr5_1:38045336-38045355 | None:intergenic | 55.0% |
| ! | TACGGTCATGGTTGGTTGGG+TGG | + | chr5_1:38045345-38045364 | None:intergenic | 55.0% |
| ! | CAAGAAGCGCGTTTGCTAGC+AGG | + | chr5_1:38046179-38046198 | None:intergenic | 55.0% |
| CTACGTCATGGCTTACGACC+AGG | - | chr5_1:38046296-38046315 | Msa0729970:intron | 55.0% | |
| CAGGCAAGTTCAGTTGGACG+CGG | - | chr5_1:38046315-38046334 | Msa0729970:intron | 55.0% | |
| CAAGTTCAGTTGGACGCGGA+CGG | - | chr5_1:38046319-38046338 | Msa0729970:intron | 55.0% | |
| ! | TGGGTTGACTGGTCAAAGGG+TGG | - | chr5_1:38046564-38046583 | Msa0729970:CDS | 55.0% |
| ! | GTTTGCTAGCAGGCGACGCT+CGG | + | chr5_1:38046169-38046188 | None:intergenic | 60.0% |
| CGCGTCCAACTGAACTTGCC+TGG | + | chr5_1:38046317-38046336 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 38044164 | 38047097 | 38044164 | ID=Msa0729970;Name=Msa0729970 |
| chr5_1 | mRNA | 38044164 | 38047097 | 38044164 | ID=Msa0729970-mRNA-1;Parent=Msa0729970;Name=Msa0729970-mRNA-1;_AED=0.00;_eAED=0.00;_QI=7|1|1|1|1|1|2|330|390 |
| chr5_1 | exon | 38044164 | 38045129 | 38044164 | ID=Msa0729970-mRNA-1:exon:11448;Parent=Msa0729970-mRNA-1 |
| chr5_1 | exon | 38046554 | 38047097 | 38046554 | ID=Msa0729970-mRNA-1:exon:11447;Parent=Msa0729970-mRNA-1 |
| chr5_1 | five_prime_UTR | 38047091 | 38047097 | 38047091 | ID=Msa0729970-mRNA-1:five_prime_utr;Parent=Msa0729970-mRNA-1 |
| chr5_1 | CDS | 38046554 | 38047090 | 38046554 | ID=Msa0729970-mRNA-1:cds;Parent=Msa0729970-mRNA-1 |
| chr5_1 | CDS | 38044494 | 38045129 | 38044494 | ID=Msa0729970-mRNA-1:cds;Parent=Msa0729970-mRNA-1 |
| chr5_1 | three_prime_UTR | 38044164 | 38044493 | 38044164 | ID=Msa0729970-mRNA-1:three_prime_utr;Parent=Msa0729970-mRNA-1 |
| Gene Sequence |
| Protein sequence |
