Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849160 | XP_003614560.1 | 98.462 | 390 | 6 | 0 | 1 | 390 | 1 | 390 | 0.0 | 798 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849160 | sp|Q65XS5|BC10_ORYSJ | 34.967 | 306 | 148 | 9 | 123 | 381 | 85 | 386 | 1.67e-44 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849160 | G7JZH3 | 98.462 | 390 | 6 | 0 | 1 | 390 | 1 | 390 | 0.0 | 798 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0679810 | Msa0849160 | 0.803504 | 3.377590e-49 | -8.615850e-47 |
| Msa0729970 | Msa0849160 | 0.904069 | 1.802475e-79 | -8.615850e-47 |
| Msa0770170 | Msa0849160 | 0.897276 | 1.644781e-76 | -8.615850e-47 |
| Msa0545290 | Msa0849160 | 0.804686 | 1.917699e-49 | -8.615850e-47 |
| Msa0600890 | Msa0849160 | 0.802759 | 4.817789e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849160 | MtrunA17_Chr5g0423131 | 98.462 | 390 | 6 | 0 | 1 | 390 | 1 | 390 | 0.0 | 798 |
| Msa0849160 | MtrunA17_Chr1g0209531 | 68.542 | 391 | 120 | 2 | 1 | 390 | 5 | 393 | 0.0 | 559 |
| Msa0849160 | MtrunA17_Chr6g0484141 | 54.436 | 417 | 163 | 5 | 1 | 390 | 3 | 419 | 1.14e-162 | 462 |
| Msa0849160 | MtrunA17_Chr5g0394961 | 50.827 | 423 | 173 | 5 | 1 | 390 | 1 | 421 | 3.46e-151 | 434 |
| Msa0849160 | MtrunA17_Chr3g0136091 | 48.655 | 409 | 173 | 7 | 1 | 390 | 3 | 393 | 2.80e-135 | 392 |
| Msa0849160 | MtrunA17_Chr1g0151841 | 50.000 | 346 | 164 | 4 | 39 | 381 | 28 | 367 | 2.26e-126 | 369 |
| Msa0849160 | MtrunA17_Chr2g0276861 | 52.922 | 308 | 143 | 1 | 85 | 390 | 131 | 438 | 9.09e-123 | 362 |
| Msa0849160 | MtrunA17_Chr8g0341461 | 52.787 | 305 | 142 | 2 | 88 | 390 | 109 | 413 | 5.15e-118 | 349 |
| Msa0849160 | MtrunA17_Chr5g0394981 | 64.789 | 213 | 74 | 1 | 179 | 390 | 2 | 214 | 1.12e-102 | 302 |
| Msa0849160 | MtrunA17_Chr4g0073871 | 64.319 | 213 | 75 | 1 | 179 | 390 | 9 | 221 | 1.57e-100 | 297 |
| Msa0849160 | MtrunA17_Chr3g0138871 | 41.390 | 331 | 156 | 8 | 81 | 381 | 49 | 371 | 7.85e-73 | 232 |
| Msa0849160 | MtrunA17_Chr1g0148241 | 39.748 | 317 | 164 | 5 | 91 | 383 | 79 | 392 | 6.87e-70 | 225 |
| Msa0849160 | MtrunA17_Chr4g0071911 | 39.039 | 333 | 165 | 7 | 81 | 383 | 63 | 387 | 4.39e-69 | 223 |
| Msa0849160 | MtrunA17_Chr2g0298501 | 41.754 | 285 | 140 | 5 | 122 | 383 | 105 | 386 | 2.40e-64 | 210 |
| Msa0849160 | MtrunA17_Chr2g0298511 | 39.100 | 289 | 141 | 5 | 122 | 383 | 97 | 377 | 2.72e-64 | 210 |
| Msa0849160 | MtrunA17_Chr2g0289021 | 37.224 | 317 | 154 | 9 | 107 | 381 | 46 | 359 | 6.40e-54 | 182 |
| Msa0849160 | MtrunA17_Chr8g0384601 | 36.842 | 304 | 144 | 9 | 122 | 381 | 55 | 354 | 1.24e-53 | 181 |
| Msa0849160 | MtrunA17_Chr1g0170231 | 37.586 | 290 | 148 | 9 | 122 | 388 | 63 | 342 | 1.60e-45 | 160 |
| Msa0849160 | MtrunA17_Chr3g0137661 | 35.276 | 326 | 191 | 9 | 77 | 388 | 55 | 374 | 9.64e-45 | 158 |
| Msa0849160 | MtrunA17_Chr4g0073881 | 38.278 | 209 | 98 | 6 | 1 | 179 | 1 | 208 | 1.53e-39 | 140 |
| Msa0849160 | MtrunA17_Chr1g0170151 | 39.236 | 288 | 144 | 10 | 122 | 388 | 64 | 341 | 3.86e-39 | 142 |
| Msa0849160 | MtrunA17_Chr2g0322161 | 35.117 | 299 | 150 | 11 | 123 | 388 | 78 | 365 | 5.19e-38 | 140 |
| Msa0849160 | MtrunA17_Chr5g0394971 | 61.628 | 86 | 32 | 1 | 95 | 179 | 1 | 86 | 4.83e-32 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0849160 | AT1G68390.1 | 64.630 | 311 | 106 | 3 | 84 | 390 | 98 | 408 | 2.83e-154 | 441 |
| Msa0849160 | AT5G11730.1 | 54.167 | 312 | 141 | 2 | 79 | 388 | 73 | 384 | 1.91e-127 | 372 |
| Msa0849160 | AT1G10280.1 | 47.222 | 396 | 180 | 7 | 21 | 388 | 16 | 410 | 3.16e-127 | 372 |
| Msa0849160 | AT1G51770.1 | 52.647 | 340 | 158 | 3 | 53 | 390 | 54 | 392 | 1.76e-126 | 370 |
| Msa0849160 | AT1G73810.1 | 49.265 | 408 | 181 | 7 | 2 | 388 | 14 | 416 | 2.04e-125 | 368 |
| Msa0849160 | AT1G68380.1 | 50.949 | 369 | 167 | 7 | 29 | 390 | 31 | 392 | 1.20e-124 | 365 |
| Msa0849160 | AT5G25970.1 | 51.572 | 318 | 149 | 3 | 76 | 388 | 68 | 385 | 1.42e-120 | 355 |
| Msa0849160 | AT5G25970.2 | 51.572 | 318 | 149 | 3 | 76 | 388 | 68 | 385 | 1.42e-120 | 355 |
| Msa0849160 | AT5G25970.3 | 51.572 | 318 | 149 | 3 | 76 | 388 | 68 | 385 | 1.42e-120 | 355 |
| Msa0849160 | AT3G21310.1 | 48.225 | 338 | 168 | 3 | 53 | 388 | 49 | 381 | 2.74e-118 | 349 |
| Msa0849160 | AT3G21310.3 | 48.225 | 338 | 168 | 3 | 53 | 388 | 49 | 381 | 2.74e-118 | 349 |
| Msa0849160 | AT1G10880.1 | 53.103 | 290 | 134 | 2 | 97 | 385 | 93 | 381 | 8.83e-115 | 340 |
| Msa0849160 | AT1G51770.2 | 47.941 | 340 | 147 | 4 | 53 | 390 | 54 | 365 | 2.66e-109 | 326 |
| Msa0849160 | AT5G16170.1 | 43.236 | 377 | 189 | 4 | 31 | 388 | 37 | 407 | 7.72e-109 | 326 |
| Msa0849160 | AT4G31350.4 | 41.379 | 290 | 147 | 4 | 122 | 390 | 88 | 375 | 3.50e-68 | 220 |
| Msa0849160 | AT4G31350.1 | 41.379 | 290 | 147 | 4 | 122 | 390 | 88 | 375 | 3.50e-68 | 220 |
| Msa0849160 | AT4G31350.2 | 41.379 | 290 | 147 | 4 | 122 | 390 | 88 | 375 | 3.50e-68 | 220 |
| Msa0849160 | AT4G30060.2 | 39.024 | 328 | 161 | 7 | 83 | 381 | 70 | 387 | 2.31e-67 | 219 |
| Msa0849160 | AT4G30060.1 | 39.024 | 328 | 161 | 7 | 83 | 381 | 70 | 387 | 2.31e-67 | 219 |
| Msa0849160 | AT4G25870.1 | 39.222 | 334 | 173 | 7 | 77 | 385 | 54 | 382 | 5.66e-67 | 217 |
| Msa0849160 | AT2G19160.2 | 37.764 | 331 | 169 | 7 | 83 | 385 | 67 | 388 | 5.70e-67 | 218 |
| Msa0849160 | AT2G19160.1 | 37.764 | 331 | 169 | 7 | 83 | 385 | 67 | 388 | 5.70e-67 | 218 |
| Msa0849160 | AT4G31350.3 | 40.345 | 290 | 145 | 5 | 122 | 390 | 88 | 370 | 4.12e-63 | 207 |
| Msa0849160 | AT3G21310.2 | 48.558 | 208 | 101 | 2 | 52 | 258 | 48 | 250 | 4.82e-63 | 203 |
| Msa0849160 | AT5G57270.3 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 6.61e-63 | 207 |
| Msa0849160 | AT5G57270.1 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 6.61e-63 | 207 |
| Msa0849160 | AT5G57270.4 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 6.61e-63 | 207 |
| Msa0849160 | AT5G57270.5 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 6.61e-63 | 207 |
| Msa0849160 | AT5G57270.2 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 6.61e-63 | 207 |
| Msa0849160 | AT5G14550.1 | 36.688 | 308 | 147 | 8 | 119 | 382 | 61 | 364 | 8.58e-55 | 185 |
| Msa0849160 | AT5G14550.3 | 36.688 | 308 | 147 | 8 | 119 | 382 | 61 | 364 | 9.94e-55 | 185 |
| Msa0849160 | AT5G14550.2 | 38.225 | 293 | 141 | 9 | 119 | 380 | 61 | 344 | 3.58e-54 | 183 |
| Msa0849160 | AT1G11940.1 | 36.392 | 316 | 153 | 11 | 108 | 381 | 61 | 370 | 5.57e-52 | 178 |
| Msa0849160 | AT1G62305.1 | 36.570 | 309 | 148 | 10 | 115 | 381 | 62 | 364 | 5.91e-52 | 178 |
| Msa0849160 | AT5G25330.1 | 34.840 | 376 | 208 | 14 | 29 | 388 | 5 | 359 | 2.50e-49 | 171 |
| Msa0849160 | AT5G14550.4 | 38.408 | 289 | 141 | 10 | 119 | 382 | 61 | 337 | 2.44e-48 | 167 |
| Msa0849160 | AT3G52060.1 | 36.101 | 277 | 160 | 8 | 122 | 388 | 74 | 343 | 3.59e-48 | 167 |
| Msa0849160 | AT1G62305.3 | 42.922 | 219 | 98 | 6 | 115 | 311 | 62 | 275 | 5.01e-47 | 163 |
| Msa0849160 | AT1G11940.2 | 45.833 | 192 | 95 | 6 | 108 | 295 | 61 | 247 | 3.25e-45 | 157 |
| Msa0849160 | AT1G62305.2 | 33.333 | 309 | 134 | 10 | 115 | 381 | 62 | 340 | 9.58e-39 | 142 |
| Msa0849160 | AT5G22070.1 | 35.000 | 300 | 150 | 12 | 123 | 388 | 71 | 359 | 9.20e-38 | 140 |
| Msa0849160 | AT4G32290.1 | 35.764 | 288 | 159 | 7 | 123 | 388 | 93 | 376 | 5.30e-35 | 133 |
Find 87 sgRNAs with CRISPR-Local
Find 192 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGAGGGACCTAATGGTAATT+TGG | 0.251097 | 5_4:+35551113 | None:intergenic |
| ATTTAATTAATAAATAATAA+AGG | 0.331278 | 5_4:-35551159 | Msa0849160:three_prime_UTR |
| GGTTAGAGGTCCTGTGCCTT+TGG | 0.333074 | 5_4:-35553665 | Msa0849160:CDS |
| AAAGGATATTCATCTATCTT+AGG | 0.344852 | 5_4:+35553721 | None:intergenic |
| AATCAAACATGTAAGTATAA+TGG | 0.347050 | 5_4:-35551524 | Msa0849160:CDS |
| CTTTAGTTAGCATTAAGTTT+TGG | 0.349642 | 5_4:-35551658 | Msa0849160:CDS |
| CATAAAGTCCACTTACTTGA+TGG | 0.365680 | 5_4:-35551280 | Msa0849160:three_prime_UTR |
| AAGTTCTTCAAAGGGCATAA+AGG | 0.385070 | 5_4:-35553628 | Msa0849160:CDS |
| GTTTATAAGTGCATGACCTT+TGG | 0.392410 | 5_4:+35551425 | None:intergenic |
| TCTGGTCTCACATATTTAAC+TGG | 0.392835 | 5_4:+35551578 | None:intergenic |
| ATTGTCTGAGTTTGATTGTA+GGG | 0.396055 | 5_4:+35551813 | None:intergenic |
| AGGCTGGAATCAAATACTAT+TGG | 0.404126 | 5_4:+35553841 | None:intergenic |
| ATGTTTGTTATTTGTTTGCT+AGG | 0.408942 | 5_4:-35551490 | Msa0849160:CDS |
| ATAATTTATATAGTTGCAAC+TGG | 0.409857 | 5_4:+35551378 | None:intergenic |
| AATAAATAATAAAGGAAAGT+TGG | 0.417002 | 5_4:-35551151 | Msa0849160:three_prime_UTR |
| CATTGTCTGAGTTTGATTGT+AGG | 0.421342 | 5_4:+35551812 | None:intergenic |
| AAACTCAGACAATGGAGAAA+AGG | 0.424464 | 5_4:-35551803 | Msa0849160:CDS |
| TATAATGCAGAAAGTAGAAT+GGG | 0.426596 | 5_4:-35552050 | Msa0849160:intron |
| AACTTAATGCTAACTAAAGT+TGG | 0.429113 | 5_4:+35551662 | None:intergenic |
| CAAGAAGCGCGTTTGCTAGC+AGG | 0.432228 | 5_4:+35551996 | None:intergenic |
| AGTTCTTCAAAGGGCATAAA+GGG | 0.434327 | 5_4:-35553627 | Msa0849160:CDS |
| GAAGTTTGACTTGGGTTGAC+TGG | 0.435516 | 5_4:-35551619 | Msa0849160:CDS |
| GTTTGCTAGCAGGCGACGCT+CGG | 0.437681 | 5_4:+35552006 | None:intergenic |
| AGGGTCTCAGTGGTTTGAAA+TGG | 0.444264 | 5_4:-35551783 | Msa0849160:CDS |
| TGAAAACCGGGTAATATGTT+CGG | 0.445181 | 5_4:+35551729 | None:intergenic |
| AAGTAAACCAAATTACCATT+AGG | 0.450618 | 5_4:-35551120 | Msa0849160:three_prime_UTR |
| AACTCAGACAATGGAGAAAA+GGG | 0.452092 | 5_4:-35551802 | Msa0849160:CDS |
| CGCGTCCAACTGAACTTGCC+TGG | 0.457072 | 5_4:+35551858 | None:intergenic |
| GTGTGATACCACATGCTAGA+AGG | 0.467681 | 5_4:+35553959 | None:intergenic |
| GCTCATGAGGTTTGCTCCAA+AGG | 0.468695 | 5_4:-35551441 | Msa0849160:CDS |
| ACTTGGGTTGACTGGTCAAA+GGG | 0.471540 | 5_4:-35551611 | Msa0849160:CDS |
| GTATTTGATTCCAGCCTCAA+TGG | 0.471892 | 5_4:-35553835 | Msa0849160:CDS |
| TGAGTGATGAAGAATTGTTA+TGG | 0.473976 | 5_4:-35553759 | Msa0849160:CDS |
| CTGATATGAGAACAAATCGT+TGG | 0.474721 | 5_4:+35551963 | None:intergenic |
| TGTGCCTTTGGCTCCTCTGT+GGG | 0.475956 | 5_4:-35553653 | Msa0849160:CDS |
| CATCAAGTCCATCAAGTAAG+TGG | 0.484902 | 5_4:+35551272 | None:intergenic |
| GTGGAGAGTCCTGTGTTTCA+TGG | 0.489177 | 5_4:-35553556 | Msa0849160:CDS |
| GACTTGGGTTGACTGGTCAA+AGG | 0.498955 | 5_4:-35551612 | Msa0849160:CDS |
| ACTTCAGAACCATTGTAAGA+TGG | 0.502479 | 5_4:+35553577 | None:intergenic |
| TCATATACTTGTAATTTCAA+AGG | 0.504221 | 5_4:-35551197 | Msa0849160:three_prime_UTR |
| AGTGTGGAAGAGGGACCTAA+TGG | 0.504473 | 5_4:+35551105 | None:intergenic |
| CTAGCATGTGGTATCACACT+TGG | 0.505414 | 5_4:-35553955 | Msa0849160:CDS |
| CTATGTCATGGCTTACGACC+AGG | 0.510022 | 5_4:-35551876 | Msa0849160:CDS |
| ATATAATGCAGAAAGTAGAA+TGG | 0.514163 | 5_4:-35552051 | Msa0849160:intron |
| AGCCTCAATGGTAGTCATGA+AGG | 0.515851 | 5_4:-35553823 | Msa0849160:CDS |
| ACCATATAAAAGTGTGGAAG+AGG | 0.516049 | 5_4:+35551095 | None:intergenic |
| CTGTGGGAGAAGTTCTTCAA+AGG | 0.518666 | 5_4:-35553637 | Msa0849160:CDS |
| TACAAATAGAAGTTTGACTT+GGG | 0.522087 | 5_4:-35551627 | Msa0849160:CDS |
| AATACTATTGGTTGGCGTAA+CGG | 0.522626 | 5_4:+35553853 | None:intergenic |
| TACGACCAGGCAAGTTCAGT+TGG | 0.529529 | 5_4:-35551863 | Msa0849160:CDS |
| CTCACATATTTAACTGGATG+TGG | 0.530102 | 5_4:+35551584 | None:intergenic |
| TTCATGACTACCATTGAGGC+TGG | 0.539090 | 5_4:+35553825 | None:intergenic |
| CTGTGCCTTTGGCTCCTCTG+TGG | 0.539356 | 5_4:-35553654 | Msa0849160:CDS |
| ATGAGCCTTGACAATGAAGT+AGG | 0.542080 | 5_4:+35551458 | None:intergenic |
| CACAGAGGAGCCAAAGGCAC+AGG | 0.545018 | 5_4:+35553655 | None:intergenic |
| TGGTAGGAGAATTCCCAGTA+AGG | 0.545755 | 5_4:-35553536 | Msa0849160:intron |
| TCTTGCCTACTTCATTGTCA+AGG | 0.554046 | 5_4:-35551463 | Msa0849160:CDS |
| ATACAAATAGAAGTTTGACT+TGG | 0.556289 | 5_4:-35551628 | Msa0849160:CDS |
| TCCTTTCGATCGAGTTCCGA+AGG | 0.557813 | 5_4:-35553704 | Msa0849160:CDS |
| CTACAATCAAACTCAGACAA+TGG | 0.558283 | 5_4:-35551811 | Msa0849160:CDS |
| ATCCTTCATGACTACCATTG+AGG | 0.559449 | 5_4:+35553821 | None:intergenic |
| ATCTTACAATGGTTCTGAAG+TGG | 0.559601 | 5_4:-35553575 | Msa0849160:CDS |
| TGGAATCAAATACTATTGGT+TGG | 0.565853 | 5_4:+35553845 | None:intergenic |
| TGTGGGAGAAGTTCTTCAAA+GGG | 0.570757 | 5_4:-35553636 | Msa0849160:CDS |
| TTCTCCCACAGAGGAGCCAA+AGG | 0.571960 | 5_4:+35553649 | None:intergenic |
| CTTCATTGTCAAGGCTCATG+AGG | 0.577302 | 5_4:-35551454 | Msa0849160:CDS |
| TACCTCCTCCTTCTAGCATG+TGG | 0.579792 | 5_4:-35553967 | Msa0849160:CDS |
| TTGTCTGAGTTTGATTGTAG+GGG | 0.583557 | 5_4:+35551814 | None:intergenic |
| AAATCATGTACAACTTGAGA+TGG | 0.588695 | 5_4:+35553781 | None:intergenic |
| ACCTTCGGAACTCGATCGAA+AGG | 0.595763 | 5_4:+35553703 | None:intergenic |
| AGAGTCCTGTGTTTCATGGT+AGG | 0.601294 | 5_4:-35553552 | Msa0849160:CDS |
| CTAGAAGGAGGAGGTAAGTG+AGG | 0.616087 | 5_4:+35553974 | None:intergenic |
| CAAGTTCAGTTGGACGCGGA+CGG | 0.618278 | 5_4:-35551853 | Msa0849160:CDS |
| ATCAGACCGAACATATTACC+CGG | 0.623786 | 5_4:-35551735 | Msa0849160:CDS |
| TTTCGATCGAGTTCCGAAGG+TGG | 0.623922 | 5_4:-35553701 | Msa0849160:CDS |
| CCATATAAAAGTGTGGAAGA+GGG | 0.631279 | 5_4:+35551096 | None:intergenic |
| CACTCGAATCCATCTTACAA+TGG | 0.632327 | 5_4:-35553586 | Msa0849160:CDS |
| ACTGTTGAGAAGTTGAATAG+TGG | 0.634685 | 5_4:+35551929 | None:intergenic |
| CAGGCAAGTTCAGTTGGACG+CGG | 0.637111 | 5_4:-35551857 | Msa0849160:CDS |
| TGGGTTGACTGGTCAAAGGG+TGG | 0.638199 | 5_4:-35551608 | Msa0849160:CDS |
| TACCACATGCTAGAAGGAGG+AGG | 0.650404 | 5_4:+35553965 | None:intergenic |
| ATTCTCCTACCATGAAACAC+AGG | 0.661769 | 5_4:+35553547 | None:intergenic |
| ATAATGCAGAAAGTAGAATG+GGG | 0.668247 | 5_4:-35552049 | Msa0849160:intron |
| TGATACCACATGCTAGAAGG+AGG | 0.668777 | 5_4:+35553962 | None:intergenic |
| TTGAAGAACTTCTCCCACAG+AGG | 0.672369 | 5_4:+35553640 | None:intergenic |
| AATGGAGAAAAGGGTCTCAG+TGG | 0.678248 | 5_4:-35551793 | Msa0849160:CDS |
| AGTTAAATATGTGAGACCAG+AGG | 0.713851 | 5_4:-35551576 | Msa0849160:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATTAATAAATAATAA+AGG | - | chr5_4:35553995-35554014 | Msa0849160:CDS | 0.0% |
| !!! | AATTTTTTTTTATCTTGATA+TGG | - | chr5_4:35551647-35551666 | Msa0849160:CDS | 10.0% |
| !! | TTAAATAATTGAAAGAATAA+AGG | - | chr5_4:35552490-35552509 | Msa0849160:intron | 10.0% |
| !!! | GTTTTTTATATCTTTTCTTT+TGG | + | chr5_4:35552149-35552168 | None:intergenic | 15.0% |
| !!! | AGATATAAAAAACTTTTTTG+AGG | - | chr5_4:35552156-35552175 | Msa0849160:intron | 15.0% |
| !!! | GATATAAAAAACTTTTTTGA+GGG | - | chr5_4:35552157-35552176 | Msa0849160:intron | 15.0% |
| !!! | ATATAAAAAACTTTTTTGAG+GGG | - | chr5_4:35552158-35552177 | Msa0849160:intron | 15.0% |
| !!! | TTTAATTTTTTTACACATTG+TGG | + | chr5_4:35552844-35552863 | None:intergenic | 15.0% |
| !!! | TAATTCATTCTTTTTTATGT+AGG | - | chr5_4:35553800-35553819 | Msa0849160:CDS | 15.0% |
| !!! | TTTTTTTTGTTGAAAGAAAT+AGG | - | chr5_4:35553932-35553951 | Msa0849160:CDS | 15.0% |
| !! | AATAAATAATAAAGGAAAGT+TGG | - | chr5_4:35554003-35554022 | Msa0849160:CDS | 15.0% |
| !! | TTATGAATGAAAATTGTCAT+TGG | - | chr5_4:35551675-35551694 | Msa0849160:CDS | 20.0% |
| !! | ATCAAAGAACAAATAAAGTA+AGG | - | chr5_4:35551729-35551748 | Msa0849160:CDS | 20.0% |
| !! | TCAAAGAACAAATAAAGTAA+GGG | - | chr5_4:35551730-35551749 | Msa0849160:CDS | 20.0% |
| !!! | AATTGTTTGATTTGAAAACA+TGG | + | chr5_4:35551790-35551809 | None:intergenic | 20.0% |
| !!! | GTATACACATGTTTTAAATA+TGG | - | chr5_4:35551842-35551861 | Msa0849160:CDS | 20.0% |
| !! | TAAATTGAATTAAGAGGAAA+AGG | - | chr5_4:35551918-35551937 | Msa0849160:CDS | 20.0% |
| !! | AAATTGAATTAAGAGGAAAA+GGG | - | chr5_4:35551919-35551938 | Msa0849160:CDS | 20.0% |
| !! | AAAAAATATTGAATGTAACC+AGG | - | chr5_4:35552002-35552021 | Msa0849160:CDS | 20.0% |
| !!! | TATAAAAAACTTTTTTGAGG+GGG | - | chr5_4:35552159-35552178 | Msa0849160:intron | 20.0% |
| !!! | AAACCATGTATAAATCTTTT+AGG | + | chr5_4:35552540-35552559 | None:intergenic | 20.0% |
| !! | AACACTAAAGTTTCATTAAA+AGG | + | chr5_4:35552776-35552795 | None:intergenic | 20.0% |
| !! | GAGAAAATTAATTTCCTTTA+TGG | - | chr5_4:35552976-35552995 | Msa0849160:intron | 20.0% |
| !! | AAGTATACAATAAACCATAA+AGG | + | chr5_4:35552993-35553012 | None:intergenic | 20.0% |
| !! | AATCAAACATGTAAGTATAA+TGG | - | chr5_4:35553630-35553649 | Msa0849160:CDS | 20.0% |
| !! | ATAATTTATATAGTTGCAAC+TGG | + | chr5_4:35553779-35553798 | None:intergenic | 20.0% |
| !!! | ACTTGATGAGTTTTTTTAAT+AGG | - | chr5_4:35553897-35553916 | Msa0849160:CDS | 20.0% |
| !! | TCATATACTTGTAATTTCAA+AGG | - | chr5_4:35553957-35553976 | Msa0849160:CDS | 20.0% |
| ! | AAAGGATATTCATCTATCTT+AGG | + | chr5_4:35551436-35551455 | None:intergenic | 25.0% |
| ! | AAAAATTCACTAACCTTACT+GGG | + | chr5_4:35551634-35551653 | None:intergenic | 25.0% |
| ! | AAAAAATTCACTAACCTTAC+TGG | + | chr5_4:35551635-35551654 | None:intergenic | 25.0% |
| ! | TCAAATCAAACAATTCTATG+TGG | - | chr5_4:35551795-35551814 | Msa0849160:CDS | 25.0% |
| ! | CCTCTTAATTCAATTTACTT+AGG | + | chr5_4:35551915-35551934 | None:intergenic | 25.0% |
| ! | CCTAAGTAAATTGAATTAAG+AGG | - | chr5_4:35551912-35551931 | Msa0849160:CDS | 25.0% |
| ! | AATTGAATTAAGAGGAAAAG+GGG | - | chr5_4:35551920-35551939 | Msa0849160:CDS | 25.0% |
| !!! | CTTCATATTAAAAGTGTTTC+CGG | + | chr5_4:35552038-35552057 | None:intergenic | 25.0% |
| !! | ACACTTTTAATATGAAGTGT+CGG | - | chr5_4:35552041-35552060 | Msa0849160:CDS | 25.0% |
| ! | TGGCAAGATTAAAAAAACAT+TGG | + | chr5_4:35552129-35552148 | None:intergenic | 25.0% |
| !!! | TGCTAATAGTATTTTGACTA+TGG | + | chr5_4:35552425-35552444 | None:intergenic | 25.0% |
| ! | ATAGATTATAGTCTTCAACT+AGG | - | chr5_4:35552607-35552626 | Msa0849160:intron | 25.0% |
| !! | CATTGCATTGATAACTAATT+AGG | + | chr5_4:35552733-35552752 | None:intergenic | 25.0% |
| ! | ACTAAAGTTTCATTAAAAGG+TGG | + | chr5_4:35552773-35552792 | None:intergenic | 25.0% |
| ! | ATTGGAAGCTTAATTCAAAA+TGG | + | chr5_4:35552891-35552910 | None:intergenic | 25.0% |
| !! | TTTTCTCATGATCACTAATT+GGG | + | chr5_4:35552963-35552982 | None:intergenic | 25.0% |
| !! | ATTTTCTCATGATCACTAAT+TGG | + | chr5_4:35552964-35552983 | None:intergenic | 25.0% |
| !!! | TACATTTTGAAACAAACTGA+TGG | + | chr5_4:35553065-35553084 | None:intergenic | 25.0% |
| ! | TCTGCATTATATCAAATGAA+GGG | + | chr5_4:35553095-35553114 | None:intergenic | 25.0% |
| ! | TTCTGCATTATATCAAATGA+AGG | + | chr5_4:35553096-35553115 | None:intergenic | 25.0% |
| ! | ATATAATGCAGAAAGTAGAA+TGG | - | chr5_4:35553103-35553122 | Msa0849160:intron | 25.0% |
| ! | TATAATGCAGAAAGTAGAAT+GGG | - | chr5_4:35553104-35553123 | Msa0849160:intron | 25.0% |
| !!! | TTGCAATATTTTCTGAAAAC+CGG | + | chr5_4:35553441-35553460 | None:intergenic | 25.0% |
| !! | GTTTTCAGAAAATATTGCAA+TGG | - | chr5_4:35553441-35553460 | Msa0849160:intron | 25.0% |
| ! | AACTTAATGCTAACTAAAGT+TGG | + | chr5_4:35553495-35553514 | None:intergenic | 25.0% |
| !! | CTTTAGTTAGCATTAAGTTT+TGG | - | chr5_4:35553496-35553515 | Msa0849160:intron | 25.0% |
| ! | ATACAAATAGAAGTTTGACT+TGG | - | chr5_4:35553526-35553545 | Msa0849160:intron | 25.0% |
| !! | TACAAATAGAAGTTTGACTT+GGG | - | chr5_4:35553527-35553546 | Msa0849160:intron | 25.0% |
| !!! | ATGTTTGTTATTTGTTTGCT+AGG | - | chr5_4:35553664-35553683 | Msa0849160:CDS | 25.0% |
| ! | AAGTAAACCAAATTACCATT+AGG | - | chr5_4:35554034-35554053 | Msa0849160:CDS | 25.0% |
| TGGAATCAAATACTATTGGT+TGG | + | chr5_4:35551312-35551331 | None:intergenic | 30.0% | |
| AAATCATGTACAACTTGAGA+TGG | + | chr5_4:35551376-35551395 | None:intergenic | 30.0% | |
| TGAGTGATGAAGAATTGTTA+TGG | - | chr5_4:35551395-35551414 | Msa0849160:three_prime_UTR | 30.0% | |
| ATTGAATTAAGAGGAAAAGG+GGG | - | chr5_4:35551921-35551940 | Msa0849160:CDS | 30.0% | |
| AAAACATTGGCACTTAGTTA+AGG | + | chr5_4:35552116-35552135 | None:intergenic | 30.0% | |
| TCTCTCATGTGTTATACTAT+TGG | - | chr5_4:35552222-35552241 | Msa0849160:intron | 30.0% | |
| TGTCTGTATATAGCATTTCA+TGG | - | chr5_4:35552334-35552353 | Msa0849160:intron | 30.0% | |
| !!! | GTATTTTGACTATGGAATAC+TGG | + | chr5_4:35552417-35552436 | None:intergenic | 30.0% |
| GTGCCTAAAAGATTTATACA+TGG | - | chr5_4:35552534-35552553 | Msa0849160:intron | 30.0% | |
| GTTGAAGACTATAATCTATG+AGG | + | chr5_4:35552606-35552625 | None:intergenic | 30.0% | |
| ATTATAGTCTTCAACTAGGT+AGG | - | chr5_4:35552611-35552630 | Msa0849160:intron | 30.0% | |
| TTAATACTGTGCCTTAACTT+TGG | + | chr5_4:35552646-35552665 | None:intergenic | 30.0% | |
| AAGTTTCATTAAAAGGTGGT+AGG | + | chr5_4:35552769-35552788 | None:intergenic | 30.0% | |
| ATGAAACTTTAGTGTTGTGT+AGG | - | chr5_4:35552780-35552799 | Msa0849160:intron | 30.0% | |
| TGAAACTTTAGTGTTGTGTA+GGG | - | chr5_4:35552781-35552800 | Msa0849160:intron | 30.0% | |
| ACTCTTTAGACTCTACATAT+TGG | + | chr5_4:35552812-35552831 | None:intergenic | 30.0% | |
| ATAATGCAGAAAGTAGAATG+GGG | - | chr5_4:35553105-35553124 | Msa0849160:intron | 30.0% | |
| ATTGTCTGAGTTTGATTGTA+GGG | + | chr5_4:35553344-35553363 | None:intergenic | 30.0% | |
| !! | TGCAATATTTTCTGAAAACC+GGG | + | chr5_4:35553440-35553459 | None:intergenic | 30.0% |
| AAAAATTCACAAGTAACCTC+TGG | + | chr5_4:35553597-35553616 | None:intergenic | 30.0% | |
| ! | AGAGGTTACTTGTGAATTTT+TGG | - | chr5_4:35553596-35553615 | Msa0849160:CDS | 30.0% |
| !! | GTGAATTTTTGGAGAATTTG+AGG | - | chr5_4:35553607-35553626 | Msa0849160:CDS | 30.0% |
| ! | AATACTATTGGTTGGCGTAA+CGG | + | chr5_4:35551304-35551323 | None:intergenic | 35.0% |
| AGGCTGGAATCAAATACTAT+TGG | + | chr5_4:35551316-35551335 | None:intergenic | 35.0% | |
| ! | AAGTTCTTCAAAGGGCATAA+AGG | - | chr5_4:35551526-35551545 | Msa0849160:CDS | 35.0% |
| ! | AGTTCTTCAAAGGGCATAAA+GGG | - | chr5_4:35551527-35551546 | Msa0849160:CDS | 35.0% |
| ACTTCAGAACCATTGTAAGA+TGG | + | chr5_4:35551580-35551599 | None:intergenic | 35.0% | |
| !! | ATCTTACAATGGTTCTGAAG+TGG | - | chr5_4:35551579-35551598 | Msa0849160:CDS | 35.0% |
| AATTAAATGAAGCAGAGCAG+AGG | - | chr5_4:35551946-35551965 | Msa0849160:CDS | 35.0% | |
| ATTAAATGAAGCAGAGCAGA+GGG | - | chr5_4:35551947-35551966 | Msa0849160:CDS | 35.0% | |
| !! | GTGACATGTACGTTTTAAGT+TGG | - | chr5_4:35552065-35552084 | Msa0849160:intron | 35.0% |
| GCACTTAGTTAAGGTAGTTA+TGG | + | chr5_4:35552107-35552126 | None:intergenic | 35.0% | |
| AACTATCCTCTTCCATACTA+CGG | + | chr5_4:35552281-35552300 | None:intergenic | 35.0% | |
| ! | ACTAACATGTGTCCTCTTTT+TGG | + | chr5_4:35552365-35552384 | None:intergenic | 35.0% |
| TGGCAAATGGCAATTTATCT+GGG | + | chr5_4:35552583-35552602 | None:intergenic | 35.0% | |
| ATAATCTATGAGGTGGCAAA+TGG | + | chr5_4:35552596-35552615 | None:intergenic | 35.0% | |
| GAAGACTATAATCTATGAGG+TGG | + | chr5_4:35552603-35552622 | None:intergenic | 35.0% | |
| TTAAGGCACAGTATTAACTG+AGG | - | chr5_4:35552649-35552668 | Msa0849160:intron | 35.0% | |
| ATATGTAGCTGTTGGAAGTT+TGG | - | chr5_4:35552672-35552691 | Msa0849160:intron | 35.0% | |
| AAAGGTGGTAGGAATTTAGA+TGG | + | chr5_4:35552758-35552777 | None:intergenic | 35.0% | |
| CTGATATGAGAACAAATCGT+TGG | + | chr5_4:35553194-35553213 | None:intergenic | 35.0% | |
| ACTGTTGAGAAGTTGAATAG+TGG | + | chr5_4:35553228-35553247 | None:intergenic | 35.0% | |
| CTCAACAAAAAGCTATGTCA+TGG | - | chr5_4:35553266-35553285 | Msa0849160:intron | 35.0% | |
| TTGTCTGAGTTTGATTGTAG+GGG | + | chr5_4:35553343-35553362 | None:intergenic | 35.0% | |
| CATTGTCTGAGTTTGATTGT+AGG | + | chr5_4:35553345-35553364 | None:intergenic | 35.0% | |
| CTACAATCAAACTCAGACAA+TGG | - | chr5_4:35553343-35553362 | Msa0849160:intron | 35.0% | |
| AAACTCAGACAATGGAGAAA+AGG | - | chr5_4:35553351-35553370 | Msa0849160:intron | 35.0% | |
| AACTCAGACAATGGAGAAAA+GGG | - | chr5_4:35553352-35553371 | Msa0849160:intron | 35.0% | |
| TGAAAACCGGGTAATATGTT+CGG | + | chr5_4:35553428-35553447 | None:intergenic | 35.0% | |
| CTCACATATTTAACTGGATG+TGG | + | chr5_4:35553573-35553592 | None:intergenic | 35.0% | |
| TCTGGTCTCACATATTTAAC+TGG | + | chr5_4:35553579-35553598 | None:intergenic | 35.0% | |
| AGTTAAATATGTGAGACCAG+AGG | - | chr5_4:35553578-35553597 | Msa0849160:CDS | 35.0% | |
| GTTTATAAGTGCATGACCTT+TGG | + | chr5_4:35553732-35553751 | None:intergenic | 35.0% | |
| CATAAAGTCCACTTACTTGA+TGG | - | chr5_4:35553874-35553893 | Msa0849160:CDS | 35.0% | |
| ! | CCATATAAAAGTGTGGAAGA+GGG | + | chr5_4:35554061-35554080 | None:intergenic | 35.0% |
| GTATTTGATTCCAGCCTCAA+TGG | - | chr5_4:35551319-35551338 | Msa0849160:three_prime_UTR | 40.0% | |
| ATCCTTCATGACTACCATTG+AGG | + | chr5_4:35551336-35551355 | None:intergenic | 40.0% | |
| AAGAACAAAAACGCCACCTT+CGG | + | chr5_4:35551469-35551488 | None:intergenic | 40.0% | |
| ! | GCGTTTTTGTTCTTGGTTAG+AGG | - | chr5_4:35551475-35551494 | Msa0849160:CDS | 40.0% |
| TGTGGGAGAAGTTCTTCAAA+GGG | - | chr5_4:35551518-35551537 | Msa0849160:CDS | 40.0% | |
| CACTCGAATCCATCTTACAA+TGG | - | chr5_4:35551568-35551587 | Msa0849160:CDS | 40.0% | |
| ATTCTCCTACCATGAAACAC+AGG | + | chr5_4:35551610-35551629 | None:intergenic | 40.0% | |
| GTTATGGTCTCAATCGATCA+TGG | + | chr5_4:35552091-35552110 | None:intergenic | 40.0% | |
| !!! | AAAACTTTTTTGAGGGGGAG+AGG | - | chr5_4:35552164-35552183 | Msa0849160:intron | 40.0% |
| TTCATGGTTCCTCCAAAAAG+AGG | - | chr5_4:35552350-35552369 | Msa0849160:intron | 40.0% | |
| ! | AACATGTGTCCTCTTTTTGG+AGG | + | chr5_4:35552362-35552381 | None:intergenic | 40.0% |
| GTGGCAAATGGCAATTTATC+TGG | + | chr5_4:35552584-35552603 | None:intergenic | 40.0% | |
| AACTGAGGATATGTAGCTGT+TGG | - | chr5_4:35552664-35552683 | Msa0849160:intron | 40.0% | |
| AACTTTAGTGTTGTGTAGGG+AGG | - | chr5_4:35552784-35552803 | Msa0849160:intron | 40.0% | |
| ACTTTAGTGTTGTGTAGGGA+GGG | - | chr5_4:35552785-35552804 | Msa0849160:intron | 40.0% | |
| CTATCTCTGGTCTGTTTCAT+TGG | + | chr5_4:35552909-35552928 | None:intergenic | 40.0% | |
| AGACCAGAGATAGAAAATGC+AGG | - | chr5_4:35552916-35552935 | Msa0849160:intron | 40.0% | |
| GACCAGAGATAGAAAATGCA+GGG | - | chr5_4:35552917-35552936 | Msa0849160:intron | 40.0% | |
| ! | TACCCTGCATTTTCTATCTC+TGG | + | chr5_4:35552922-35552941 | None:intergenic | 40.0% |
| ATCAGACCGAACATATTACC+CGG | - | chr5_4:35553419-35553438 | Msa0849160:intron | 40.0% | |
| TCTTGCCTACTTCATTGTCA+AGG | - | chr5_4:35553691-35553710 | Msa0849160:CDS | 40.0% | |
| ATGAGCCTTGACAATGAAGT+AGG | + | chr5_4:35553699-35553718 | None:intergenic | 40.0% | |
| CATCAAGTCCATCAAGTAAG+TGG | + | chr5_4:35553885-35553904 | None:intergenic | 40.0% | |
| AGAGGGACCTAATGGTAATT+TGG | + | chr5_4:35554044-35554063 | None:intergenic | 40.0% | |
| TGATACCACATGCTAGAAGG+AGG | + | chr5_4:35551195-35551214 | None:intergenic | 45.0% | |
| GTGTGATACCACATGCTAGA+AGG | + | chr5_4:35551198-35551217 | None:intergenic | 45.0% | |
| CTAGCATGTGGTATCACACT+TGG | - | chr5_4:35551199-35551218 | Msa0849160:three_prime_UTR | 45.0% | |
| TTCATGACTACCATTGAGGC+TGG | + | chr5_4:35551332-35551351 | None:intergenic | 45.0% | |
| AGCCTCAATGGTAGTCATGA+AGG | - | chr5_4:35551331-35551350 | Msa0849160:three_prime_UTR | 45.0% | |
| ! | GAAGGTGGCGTTTTTGTTCT+TGG | - | chr5_4:35551468-35551487 | Msa0849160:CDS | 45.0% |
| TTGAAGAACTTCTCCCACAG+AGG | + | chr5_4:35551517-35551536 | None:intergenic | 45.0% | |
| CTGTGGGAGAAGTTCTTCAA+AGG | - | chr5_4:35551517-35551536 | Msa0849160:CDS | 45.0% | |
| AGAGTCCTGTGTTTCATGGT+AGG | - | chr5_4:35551602-35551621 | Msa0849160:CDS | 45.0% | |
| TGGTAGGAGAATTCCCAGTA+AGG | - | chr5_4:35551618-35551637 | Msa0849160:CDS | 45.0% | |
| GTAACCAGGTGAGTTAGTAC+CGG | - | chr5_4:35552016-35552035 | Msa0849160:CDS | 45.0% | |
| CCAGTTGTAAGCTACTTCAG+TGG | + | chr5_4:35552190-35552209 | None:intergenic | 45.0% | |
| CCACTGAAGTAGCTTACAAC+TGG | - | chr5_4:35552187-35552206 | Msa0849160:intron | 45.0% | |
| ! | TACTACGGTCATGGTTGGTT+GGG | + | chr5_4:35552266-35552285 | None:intergenic | 45.0% |
| ATACTACGGTCATGGTTGGT+TGG | + | chr5_4:35552267-35552286 | None:intergenic | 45.0% | |
| AACCAACCATGACCGTAGTA+TGG | - | chr5_4:35552266-35552285 | Msa0849160:intron | 45.0% | |
| TTCCATACTACGGTCATGGT+TGG | + | chr5_4:35552271-35552290 | None:intergenic | 45.0% | |
| CTTCAACTAGGTAGGTCATG+AGG | - | chr5_4:35552619-35552638 | Msa0849160:intron | 45.0% | |
| GGTCATGAGGACCAAAGTTA+AGG | - | chr5_4:35552632-35552651 | Msa0849160:intron | 45.0% | |
| AATGGAGAAAAGGGTCTCAG+TGG | - | chr5_4:35553361-35553380 | Msa0849160:intron | 45.0% | |
| AGGGTCTCAGTGGTTTGAAA+TGG | - | chr5_4:35553371-35553390 | Msa0849160:intron | 45.0% | |
| !! | GAAGTTTGACTTGGGTTGAC+TGG | - | chr5_4:35553535-35553554 | Msa0849160:intron | 45.0% |
| !! | ACTTGGGTTGACTGGTCAAA+GGG | - | chr5_4:35553543-35553562 | Msa0849160:CDS | 45.0% |
| CTTCATTGTCAAGGCTCATG+AGG | - | chr5_4:35553700-35553719 | Msa0849160:CDS | 45.0% | |
| !!! | CAATATTTTTTAATTATTAT+AGG | + | chr5_4:35551993-35552012 | None:intergenic | 5.0% |
| CTAGAAGGAGGAGGTAAGTG+AGG | + | chr5_4:35551183-35551202 | None:intergenic | 50.0% | |
| TACCTCCTCCTTCTAGCATG+TGG | - | chr5_4:35551187-35551206 | Msa0849160:three_prime_UTR | 50.0% | |
| TACCACATGCTAGAAGGAGG+AGG | + | chr5_4:35551192-35551211 | None:intergenic | 50.0% | |
| TCCTTTCGATCGAGTTCCGA+AGG | - | chr5_4:35551450-35551469 | Msa0849160:CDS | 50.0% | |
| ACCTTCGGAACTCGATCGAA+AGG | + | chr5_4:35551454-35551473 | None:intergenic | 50.0% | |
| TTTCGATCGAGTTCCGAAGG+TGG | - | chr5_4:35551453-35551472 | Msa0849160:CDS | 50.0% | |
| GTGGAGAGTCCTGTGTTTCA+TGG | - | chr5_4:35551598-35551617 | Msa0849160:CDS | 50.0% | |
| GTTTCCGGTACTAACTCACC+TGG | + | chr5_4:35552023-35552042 | None:intergenic | 50.0% | |
| ! | TTGGTTGGGTGGTTTGTGAG+GGG | + | chr5_4:35552252-35552271 | None:intergenic | 50.0% |
| ! | GTTGGTTGGGTGGTTTGTGA+GGG | + | chr5_4:35552253-35552272 | None:intergenic | 50.0% |
| CCTCTTCCATACTACGGTCA+TGG | + | chr5_4:35552275-35552294 | None:intergenic | 50.0% | |
| CCATGACCGTAGTATGGAAG+AGG | - | chr5_4:35552272-35552291 | Msa0849160:intron | 50.0% | |
| CTATGTCATGGCTTACGACC+AGG | - | chr5_4:35553278-35553297 | Msa0849160:intron | 50.0% | |
| TACGACCAGGCAAGTTCAGT+TGG | - | chr5_4:35553291-35553310 | Msa0849160:intron | 50.0% | |
| !! | GACTTGGGTTGACTGGTCAA+AGG | - | chr5_4:35553542-35553561 | Msa0849160:CDS | 50.0% |
| ! | GCTCATGAGGTTTGCTCCAA+AGG | - | chr5_4:35553713-35553732 | Msa0849160:CDS | 50.0% |
| AGTGTGGAAGAGGGACCTAA+TGG | + | chr5_4:35554052-35554071 | None:intergenic | 50.0% | |
| GGTTAGAGGTCCTGTGCCTT+TGG | - | chr5_4:35551489-35551508 | Msa0849160:CDS | 55.0% | |
| ! | TGTGCCTTTGGCTCCTCTGT+GGG | - | chr5_4:35551501-35551520 | Msa0849160:CDS | 55.0% |
| TTCTCCCACAGAGGAGCCAA+AGG | + | chr5_4:35551508-35551527 | None:intergenic | 55.0% | |
| ! | GGTTGGTTGGGTGGTTTGTG+AGG | + | chr5_4:35552254-35552273 | None:intergenic | 55.0% |
| ! | TACGGTCATGGTTGGTTGGG+TGG | + | chr5_4:35552263-35552282 | None:intergenic | 55.0% |
| ! | CAAGAAGCGCGTTTGCTAGC+AGG | + | chr5_4:35553161-35553180 | None:intergenic | 55.0% |
| CAGGCAAGTTCAGTTGGACG+CGG | - | chr5_4:35553297-35553316 | Msa0849160:intron | 55.0% | |
| CAAGTTCAGTTGGACGCGGA+CGG | - | chr5_4:35553301-35553320 | Msa0849160:intron | 55.0% | |
| ! | TGGGTTGACTGGTCAAAGGG+TGG | - | chr5_4:35553546-35553565 | Msa0849160:CDS | 55.0% |
| ! | CACAGAGGAGCCAAAGGCAC+AGG | + | chr5_4:35551502-35551521 | None:intergenic | 60.0% |
| ! | CTGTGCCTTTGGCTCCTCTG+TGG | - | chr5_4:35551500-35551519 | Msa0849160:CDS | 60.0% |
| ! | GTTTGCTAGCAGGCGACGCT+CGG | + | chr5_4:35553151-35553170 | None:intergenic | 60.0% |
| CGCGTCCAACTGAACTTGCC+TGG | + | chr5_4:35553299-35553318 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_4 | gene | 35551096 | 35554080 | 35551096 | ID=Msa0849160;Name=Msa0849160 |
| chr5_4 | mRNA | 35551096 | 35554080 | 35551096 | ID=Msa0849160-mRNA-1;Parent=Msa0849160;Name=Msa0849160-mRNA-1;_AED=0.00;_eAED=0.00;_QI=7|1|1|1|1|1|2|331|390 |
| chr5_4 | exon | 35551096 | 35552062 | 35551096 | ID=Msa0849160-mRNA-1:exon:11870;Parent=Msa0849160-mRNA-1 |
| chr5_4 | exon | 35553537 | 35554080 | 35553537 | ID=Msa0849160-mRNA-1:exon:11869;Parent=Msa0849160-mRNA-1 |
| chr5_4 | five_prime_UTR | 35554074 | 35554080 | 35554074 | ID=Msa0849160-mRNA-1:five_prime_utr;Parent=Msa0849160-mRNA-1 |
| chr5_4 | CDS | 35553537 | 35554073 | 35553537 | ID=Msa0849160-mRNA-1:cds;Parent=Msa0849160-mRNA-1 |
| chr5_4 | CDS | 35551427 | 35552062 | 35551427 | ID=Msa0849160-mRNA-1:cds;Parent=Msa0849160-mRNA-1 |
| chr5_4 | three_prime_UTR | 35551096 | 35551426 | 35551096 | ID=Msa0849160-mRNA-1:three_prime_utr;Parent=Msa0849160-mRNA-1 |
| Gene Sequence |
| Protein sequence |
