Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545290 | XP_013455783.2 | 91.882 | 271 | 22 | 0 | 1 | 271 | 1 | 271 | 1.18e-180 | 507 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545290 | sp|Q94KL7|SILD_FORIN | 58.303 | 271 | 109 | 1 | 2 | 268 | 3 | 273 | 4.24e-105 | 309 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545290 | A0A396I496 | 91.882 | 271 | 22 | 0 | 1 | 271 | 1 | 271 | 0.0 | 507 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0005270 | Msa0545290 | 0.800520 | 1.386886e-48 | -8.615850e-47 |
| Msa0007470 | Msa0545290 | 0.806005 | 1.014586e-49 | -8.615850e-47 |
| Msa0008220 | Msa0545290 | 0.801984 | 6.956816e-49 | -8.615850e-47 |
| Msa0015460 | Msa0545290 | 0.806596 | 7.619293e-50 | -8.615850e-47 |
| Msa0017320 | Msa0545290 | 0.833212 | 6.072786e-56 | -8.615850e-47 |
| Msa0043730 | Msa0545290 | 0.824800 | 6.633378e-54 | -8.615850e-47 |
| Msa0056060 | Msa0545290 | 0.802600 | 5.194332e-49 | -8.615850e-47 |
| Msa0065650 | Msa0545290 | 0.819051 | 1.422693e-52 | -8.615850e-47 |
| Msa0072170 | Msa0545290 | 0.802541 | 5.343076e-49 | -8.615850e-47 |
| Msa0085720 | Msa0545290 | 0.800563 | 1.359011e-48 | -8.615850e-47 |
| Msa0090390 | Msa0545290 | 0.818393 | 2.006353e-52 | -8.615850e-47 |
| Msa0109590 | Msa0545290 | 0.806951 | 6.408947e-50 | -8.615850e-47 |
| Msa0111080 | Msa0545290 | 0.807484 | 4.941362e-50 | -8.615850e-47 |
| Msa0126880 | Msa0545290 | 0.801198 | 1.008336e-48 | -8.615850e-47 |
| Msa0130520 | Msa0545290 | 0.833764 | 4.420460e-56 | -8.615850e-47 |
| Msa0137870 | Msa0545290 | 0.807290 | 5.433294e-50 | -8.615850e-47 |
| Msa0138020 | Msa0545290 | 0.805617 | 1.224239e-49 | -8.615850e-47 |
| Msa0142280 | Msa0545290 | 0.829535 | 4.874586e-55 | -8.615850e-47 |
| Msa0142500 | Msa0545290 | 0.821552 | 3.800490e-53 | -8.615850e-47 |
| Msa0152560 | Msa0545290 | 0.808373 | 3.197294e-50 | -8.615850e-47 |
| Msa0155340 | Msa0545290 | 0.813352 | 2.673625e-51 | -8.615850e-47 |
| Msa0171980 | Msa0545290 | 0.806158 | 9.424637e-50 | -8.615850e-47 |
| Msa0187490 | Msa0545290 | 0.818495 | 1.903072e-52 | -8.615850e-47 |
| Msa0187830 | Msa0545290 | 0.816095 | 6.599053e-52 | -8.615850e-47 |
| Msa0189610 | Msa0545290 | 0.801689 | 7.997301e-49 | -8.615850e-47 |
| Msa0202930 | Msa0545290 | 0.812910 | 3.342260e-51 | -8.615850e-47 |
| Msa0220080 | Msa0545290 | 0.814553 | 1.453317e-51 | -8.615850e-47 |
| Msa0223920 | Msa0545290 | 0.815026 | 1.141135e-51 | -8.615850e-47 |
| Msa0225470 | Msa0545290 | 0.814610 | 1.411128e-51 | -8.615850e-47 |
| Msa0236070 | Msa0545290 | 0.800750 | 1.245071e-48 | -8.615850e-47 |
| Msa0436190 | Msa0545290 | 0.811464 | 6.911236e-51 | -8.615850e-47 |
| Msa0482180 | Msa0545290 | 0.820808 | 5.641240e-53 | -8.615850e-47 |
| Msa0244140 | Msa0545290 | 0.822181 | 2.717959e-53 | -8.615850e-47 |
| Msa0244190 | Msa0545290 | 0.818786 | 1.634718e-52 | -8.615850e-47 |
| Msa0265160 | Msa0545290 | 0.834641 | 2.664758e-56 | -8.615850e-47 |
| Msa0284450 | Msa0545290 | 0.817302 | 3.539177e-52 | -8.615850e-47 |
| Msa0299660 | Msa0545290 | 0.827634 | 1.403614e-54 | -8.615850e-47 |
| Msa0300150 | Msa0545290 | 0.802495 | 5.459345e-49 | -8.615850e-47 |
| Msa0311470 | Msa0545290 | 0.801822 | 7.511239e-49 | -8.615850e-47 |
| Msa0319290 | Msa0545290 | 0.800353 | 1.500157e-48 | -8.615850e-47 |
| Msa0340690 | Msa0545290 | 0.822601 | 2.170979e-53 | -8.615850e-47 |
| Msa0340710 | Msa0545290 | 0.817516 | 3.166094e-52 | -8.615850e-47 |
| Msa0485490 | Msa0545290 | 0.807963 | 3.910108e-50 | -8.615850e-47 |
| Msa0530650 | Msa0545290 | 0.801118 | 1.046963e-48 | -8.615850e-47 |
| Msa0534410 | Msa0545290 | 0.821095 | 4.843454e-53 | -8.615850e-47 |
| Msa0537770 | Msa0545290 | 0.810128 | 1.344290e-50 | -8.615850e-47 |
| Msa0545290 | Msa0573580 | 0.806743 | 7.091288e-50 | -8.615850e-47 |
| Msa0545290 | Msa0582280 | 0.813084 | 3.061456e-51 | -8.615850e-47 |
| Msa0545290 | Msa0587190 | 0.816840 | 4.494685e-52 | -8.615850e-47 |
| Msa0545290 | Msa0594200 | 0.809566 | 1.776397e-50 | -8.615850e-47 |
| Msa0545290 | Msa0597000 | 0.806089 | 9.745307e-50 | -8.615850e-47 |
| Msa0545290 | Msa0600890 | 0.997082 | 1.328516e-236 | -8.615850e-47 |
| Msa0545290 | Msa0626850 | 0.802459 | 5.554821e-49 | -8.615850e-47 |
| Msa0545290 | Msa0626990 | 0.808720 | 2.696440e-50 | -8.615850e-47 |
| Msa0545290 | Msa0627350 | 0.810213 | 1.288739e-50 | -8.615850e-47 |
| Msa0545290 | Msa0630950 | 0.812715 | 3.687658e-51 | -8.615850e-47 |
| Msa0545290 | Msa0641320 | 0.823008 | 1.744852e-53 | -8.615850e-47 |
| Msa0545290 | Msa0641340 | 0.829038 | 6.436949e-55 | -8.615850e-47 |
| Msa0545290 | Msa0643320 | 0.810161 | 1.322567e-50 | -8.615850e-47 |
| Msa0545290 | Msa0654620 | 0.822735 | 2.020496e-53 | -8.615850e-47 |
| Msa0545290 | Msa0679550 | 0.829529 | 4.893316e-55 | -8.615850e-47 |
| Msa0545290 | Msa0679810 | 0.998616 | 1.328723e-270 | -8.615850e-47 |
| Msa0545290 | Msa0683140 | 0.813578 | 2.384785e-51 | -8.615850e-47 |
| Msa0545290 | Msa0683600 | 0.800077 | 1.707135e-48 | -8.615850e-47 |
| Msa0545290 | Msa0689780 | 0.827478 | 1.529945e-54 | -8.615850e-47 |
| Msa0545290 | Msa0705990 | 0.811790 | 5.868340e-51 | -8.615850e-47 |
| Msa0545290 | Msa0715410 | 0.825617 | 4.250821e-54 | -8.615850e-47 |
| Msa0545290 | Msa0720370 | 0.803755 | 2.996781e-49 | -8.615850e-47 |
| Msa0545290 | Msa0721340 | 0.823555 | 1.300414e-53 | -8.615850e-47 |
| Msa0545290 | Msa0729970 | 0.806449 | 8.183192e-50 | -8.615850e-47 |
| Msa0545290 | Msa0731180 | 0.815175 | 1.057645e-51 | -8.615850e-47 |
| Msa0545290 | Msa0742150 | 0.853374 | 2.493486e-61 | -8.615850e-47 |
| Msa0545290 | Msa0750850 | 0.803618 | 3.199120e-49 | -8.615850e-47 |
| Msa0545290 | Msa0764920 | 0.806596 | 7.618141e-50 | -8.615850e-47 |
| Msa0545290 | Msa0771580 | 0.800889 | 1.165822e-48 | -8.615850e-47 |
| Msa0545290 | Msa0775560 | 0.833137 | 6.338227e-56 | -8.615850e-47 |
| Msa0545290 | Msa0786070 | 0.845136 | 4.900951e-59 | -8.615850e-47 |
| Msa0545290 | Msa0805920 | 0.845037 | 5.214155e-59 | -8.615850e-47 |
| Msa0545290 | Msa0809140 | 0.836345 | 9.879592e-57 | -8.615850e-47 |
| Msa0545290 | Msa0812950 | 0.825671 | 4.128374e-54 | -8.615850e-47 |
| Msa0545290 | Msa0823440 | 0.817610 | 3.016674e-52 | -8.615850e-47 |
| Msa0545290 | Msa0844110 | 0.804791 | 1.823436e-49 | -8.615850e-47 |
| Msa0545290 | Msa0849160 | 0.804686 | 1.917699e-49 | -8.615850e-47 |
| Msa0545290 | Msa0853440 | 0.807045 | 6.123639e-50 | -8.615850e-47 |
| Msa0545290 | Msa0861470 | 0.822876 | 1.873283e-53 | -8.615850e-47 |
| Msa0545290 | Msa0861570 | 0.811156 | 8.058714e-51 | -8.615850e-47 |
| Msa0545290 | Msa0862280 | 0.807777 | 4.282123e-50 | -8.615850e-47 |
| Msa0545290 | Msa0882400 | 0.803699 | 3.077387e-49 | -8.615850e-47 |
| Msa0545290 | Msa0901320 | 0.800735 | 1.253353e-48 | -8.615850e-47 |
| Msa0545290 | Msa0925840 | 0.822072 | 2.879836e-53 | -8.615850e-47 |
| Msa0545290 | Msa0932100 | 0.809591 | 1.754261e-50 | -8.615850e-47 |
| Msa0545290 | Msa0945100 | 0.806723 | 7.162462e-50 | -8.615850e-47 |
| Msa0545290 | Msa0945120 | 0.818141 | 2.288176e-52 | -8.615850e-47 |
| Msa0545290 | Msa0970230 | 0.808574 | 2.897371e-50 | -8.615850e-47 |
| Msa0545290 | Msa0970480 | 0.805132 | 1.547172e-49 | -8.615850e-47 |
| Msa0545290 | Msa0980020 | 0.835470 | 1.646877e-56 | -8.615850e-47 |
| Msa0545290 | Msa0993240 | 0.817865 | 2.641421e-52 | -8.615850e-47 |
| Msa0545290 | Msa0994370 | 0.825193 | 5.357712e-54 | -8.615850e-47 |
| Msa0545290 | Msa1023300 | 0.805379 | 1.373538e-49 | -8.615850e-47 |
| Msa0545290 | Msa1036910 | 0.829689 | 4.472670e-55 | -8.615850e-47 |
| Msa0545290 | Msa1042660 | 0.814462 | 1.521861e-51 | -8.615850e-47 |
| Msa0545290 | Msa1062030 | 0.811931 | 5.469353e-51 | -8.615850e-47 |
| Msa0545290 | Msa1071320 | 0.810552 | 1.089288e-50 | -8.615850e-47 |
| Msa0545290 | Msa1077340 | 0.814323 | 1.633094e-51 | -8.615850e-47 |
| Msa0545290 | Msa1088290 | 0.801296 | 9.627101e-49 | -8.615850e-47 |
| Msa0545290 | Msa1107190 | 0.838383 | 2.971778e-57 | -8.615850e-47 |
| Msa0545290 | Msa1115280 | 0.821208 | 4.561172e-53 | -8.615850e-47 |
| Msa0545290 | Msa1150790 | 0.836093 | 1.145370e-56 | -8.615850e-47 |
| Msa0545290 | Msa1150800 | 0.804194 | 2.428289e-49 | -8.615850e-47 |
| Msa0545290 | Msa1150810 | 0.821900 | 3.157414e-53 | -8.615850e-47 |
| Msa0545290 | Msa1164020 | 0.848981 | 4.332756e-60 | -8.615850e-47 |
| Msa0545290 | Msa1172130 | -0.810915 | 9.092285e-51 | -8.615850e-47 |
| Msa0545290 | Msa1174310 | 0.806447 | 8.188641e-50 | -8.615850e-47 |
| Msa0545290 | Msa1177780 | 0.803001 | 4.294013e-49 | -8.615850e-47 |
| Msa0545290 | Msa1200250 | 0.803611 | 3.209690e-49 | -8.615850e-47 |
| Msa0545290 | Msa1224200 | 0.822783 | 1.968728e-53 | -8.615850e-47 |
| Msa0545290 | Msa1225100 | 0.808869 | 2.505476e-50 | -8.615850e-47 |
| Msa0545290 | Msa1229610 | 0.851479 | 8.638473e-61 | -8.615850e-47 |
| Msa0545290 | Msa1246700 | 0.805588 | 1.241399e-49 | -8.615850e-47 |
| Msa0545290 | Msa1250110 | 0.810636 | 1.044360e-50 | -8.615850e-47 |
| Msa0545290 | Msa1250730 | 0.807238 | 5.572317e-50 | -8.615850e-47 |
| Msa0545290 | Msa1258370 | 0.809428 | 1.901565e-50 | -8.615850e-47 |
| Msa0545290 | Msa1259530 | 0.817617 | 3.005815e-52 | -8.615850e-47 |
| Msa0545290 | Msa1270660 | 0.810677 | 1.023653e-50 | -8.615850e-47 |
| Msa0545290 | Msa1270730 | 0.809525 | 1.812766e-50 | -8.615850e-47 |
| Msa0545290 | Msa1272320 | 0.846603 | 1.958229e-59 | -8.615850e-47 |
| Msa0545290 | Msa1276340 | 0.822860 | 1.889502e-53 | -8.615850e-47 |
| Msa0545290 | Msa1279480 | 0.803224 | 3.861101e-49 | -8.615850e-47 |
| Msa0545290 | Msa1310220 | 0.824038 | 1.002366e-53 | -8.615850e-47 |
| Msa0545290 | Msa1314770 | 0.816413 | 5.600381e-52 | -8.615850e-47 |
| Msa0545290 | Msa1329870 | 0.812597 | 3.913749e-51 | -8.615850e-47 |
| Msa0545290 | Msa1332050 | 0.801489 | 8.789515e-49 | -8.615850e-47 |
| Msa0545290 | Msa1355890 | 0.840680 | 7.513309e-58 | -8.615850e-47 |
| Msa0545290 | Msa1363700 | 0.802041 | 6.772638e-49 | -8.615850e-47 |
| Msa0545290 | Msa1364160 | 0.800195 | 1.615050e-48 | -8.615850e-47 |
| Msa0545290 | Msa1405220 | 0.815048 | 1.128621e-51 | -8.615850e-47 |
| Msa0545290 | Msa1420270 | 0.828500 | 8.684941e-55 | -8.615850e-47 |
| Msa0545290 | Msa1421210 | 0.805705 | 1.173110e-49 | -8.615850e-47 |
| Msa0545290 | Msa1428780 | 0.805786 | 1.128151e-49 | -8.615850e-47 |
| Msa0545290 | Msa1443610 | 0.816441 | 5.520435e-52 | -8.615850e-47 |
| Msa0545290 | Msa1457160 | 0.844870 | 5.783890e-59 | -8.615850e-47 |
| Msa0545290 | Msa1463600 | 0.827532 | 1.485487e-54 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545290 | MtrunA17_Chr4g0025971 | 91.882 | 271 | 22 | 0 | 1 | 271 | 1 | 271 | 0.0 | 507 |
| Msa0545290 | MtrunA17_Chr4g0026001 | 84.133 | 271 | 43 | 0 | 1 | 271 | 1 | 271 | 1.60e-172 | 477 |
| Msa0545290 | MtrunA17_Chr4g0025981 | 82.143 | 252 | 45 | 0 | 15 | 266 | 42 | 293 | 1.27e-152 | 429 |
| Msa0545290 | MtrunA17_Chr4g0044111 | 60.305 | 262 | 101 | 1 | 12 | 270 | 11 | 272 | 5.60e-107 | 311 |
| Msa0545290 | MtrunA17_Chr7g0266981 | 60.305 | 262 | 101 | 1 | 12 | 270 | 11 | 272 | 1.06e-106 | 310 |
| Msa0545290 | MtrunA17_Chr7g0266891 | 58.462 | 260 | 105 | 1 | 14 | 270 | 7 | 266 | 3.53e-101 | 296 |
| Msa0545290 | MtrunA17_Chr4g0044131 | 55.731 | 253 | 109 | 1 | 12 | 261 | 6 | 258 | 3.16e-89 | 266 |
| Msa0545290 | MtrunA17_Chr7g0244061 | 50.909 | 275 | 108 | 5 | 12 | 262 | 27 | 298 | 9.65e-88 | 263 |
| Msa0545290 | MtrunA17_Chr7g0268591 | 50.746 | 268 | 122 | 4 | 12 | 270 | 31 | 297 | 2.58e-82 | 249 |
| Msa0545290 | MtrunA17_Chr7g0252031 | 50.000 | 270 | 120 | 5 | 12 | 269 | 33 | 299 | 7.19e-79 | 240 |
| Msa0545290 | MtrunA17_Chr2g0324021 | 50.000 | 254 | 122 | 3 | 12 | 261 | 4 | 256 | 1.04e-78 | 239 |
| Msa0545290 | MtrunA17_Chr7g0270441 | 49.035 | 259 | 126 | 3 | 12 | 266 | 4 | 260 | 1.55e-78 | 238 |
| Msa0545290 | MtrunA17_Chr7g0270451 | 48.627 | 255 | 126 | 3 | 12 | 262 | 4 | 257 | 1.67e-76 | 233 |
| Msa0545290 | MtrunA17_Chr6g0459261 | 45.489 | 266 | 139 | 4 | 1 | 261 | 13 | 277 | 4.69e-75 | 230 |
| Msa0545290 | MtrunA17_Chr7g0267011 | 60.326 | 184 | 73 | 0 | 12 | 195 | 6 | 189 | 1.36e-74 | 226 |
| Msa0545290 | MtrunA17_Chr7g0267001 | 50.588 | 255 | 101 | 4 | 12 | 261 | 6 | 240 | 1.47e-74 | 228 |
| Msa0545290 | MtrunA17_Chr7g0266991 | 52.814 | 231 | 89 | 2 | 11 | 238 | 22 | 235 | 7.20e-74 | 226 |
| Msa0545290 | MtrunA17_Chr3g0084871 | 48.496 | 266 | 127 | 2 | 12 | 267 | 14 | 279 | 3.16e-73 | 225 |
| Msa0545290 | MtrunA17_Chr4g0040371 | 46.241 | 266 | 125 | 4 | 10 | 262 | 15 | 275 | 2.33e-71 | 221 |
| Msa0545290 | MtrunA17_Chr6g0459281 | 45.349 | 258 | 136 | 3 | 8 | 260 | 7 | 264 | 2.85e-70 | 217 |
| Msa0545290 | MtrunA17_Chr6g0459331 | 46.008 | 263 | 136 | 4 | 1 | 258 | 1 | 262 | 6.01e-69 | 214 |
| Msa0545290 | MtrunA17_Chr6g0459301 | 43.478 | 253 | 138 | 3 | 13 | 260 | 13 | 265 | 2.57e-68 | 212 |
| Msa0545290 | MtrunA17_Chr6g0459271 | 44.361 | 266 | 142 | 4 | 1 | 261 | 1 | 265 | 8.64e-67 | 208 |
| Msa0545290 | MtrunA17_Chr6g0459351 | 46.032 | 252 | 127 | 5 | 13 | 257 | 12 | 261 | 1.05e-66 | 208 |
| Msa0545290 | MtrunA17_Chr4g0044121 | 56.983 | 179 | 74 | 1 | 95 | 270 | 1 | 179 | 2.79e-63 | 196 |
| Msa0545290 | MtrunA17_Chr6g0463951 | 49.419 | 172 | 82 | 3 | 95 | 262 | 1 | 171 | 7.45e-44 | 147 |
| Msa0545290 | MtrunA17_Chr7g0270471 | 47.973 | 148 | 73 | 2 | 121 | 264 | 1 | 148 | 1.77e-39 | 134 |
| Msa0545290 | MtrunA17_Chr3g0122901 | 30.709 | 254 | 168 | 5 | 8 | 257 | 69 | 318 | 6.35e-34 | 125 |
| Msa0545290 | MtrunA17_Chr4g0028921 | 31.136 | 273 | 176 | 7 | 4 | 267 | 1 | 270 | 1.37e-29 | 112 |
| Msa0545290 | MtrunA17_Chr3g0142651 | 43.182 | 132 | 70 | 1 | 95 | 221 | 1 | 132 | 1.63e-28 | 105 |
| Msa0545290 | MtrunA17_Chr1g0191751 | 33.858 | 254 | 154 | 6 | 13 | 256 | 100 | 349 | 1.85e-28 | 111 |
| Msa0545290 | MtrunA17_Chr4g0028911 | 30.798 | 263 | 170 | 7 | 14 | 267 | 11 | 270 | 2.95e-27 | 106 |
| Msa0545290 | MtrunA17_Chr7g0270461 | 51.020 | 98 | 48 | 0 | 12 | 109 | 44 | 141 | 9.19e-27 | 101 |
| Msa0545290 | MtrunA17_Chr7g0272961 | 30.196 | 255 | 162 | 7 | 13 | 256 | 39 | 288 | 8.61e-26 | 103 |
| Msa0545290 | MtrunA17_Chr4g0074511 | 32.453 | 265 | 158 | 10 | 9 | 259 | 35 | 292 | 3.63e-24 | 98.6 |
| Msa0545290 | MtrunA17_Chr1g0171831 | 30.040 | 253 | 158 | 7 | 11 | 247 | 11 | 260 | 6.08e-23 | 94.7 |
| Msa0545290 | MtrunA17_Chr7g0259521 | 28.986 | 276 | 165 | 10 | 1 | 262 | 1 | 259 | 7.86e-23 | 94.4 |
| Msa0545290 | MtrunA17_Chr0c30g0494101 | 32.331 | 266 | 155 | 11 | 9 | 259 | 35 | 290 | 1.48e-22 | 94.4 |
| Msa0545290 | MtrunA17_Chr3g0112261 | 29.200 | 250 | 170 | 6 | 14 | 259 | 19 | 265 | 2.47e-21 | 90.5 |
| Msa0545290 | MtrunA17_Chr8g0357481 | 31.298 | 262 | 152 | 8 | 14 | 257 | 14 | 265 | 4.51e-21 | 90.5 |
| Msa0545290 | MtrunA17_Chr4g0045041 | 33.202 | 253 | 141 | 8 | 16 | 253 | 6 | 245 | 1.29e-20 | 91.3 |
| Msa0545290 | MtrunA17_Chr3g0112151 | 30.196 | 255 | 169 | 8 | 14 | 264 | 86 | 335 | 4.22e-20 | 88.2 |
| Msa0545290 | MtrunA17_Chr7g0239511 | 29.259 | 270 | 176 | 8 | 1 | 259 | 1 | 266 | 1.51e-19 | 85.5 |
| Msa0545290 | MtrunA17_Chr3g0112271 | 28.137 | 263 | 178 | 6 | 8 | 264 | 9 | 266 | 1.86e-19 | 85.5 |
| Msa0545290 | MtrunA17_Chr4g0075531 | 26.506 | 249 | 175 | 6 | 12 | 257 | 5 | 248 | 6.56e-19 | 83.6 |
| Msa0545290 | MtrunA17_Chr4g0045061 | 30.859 | 256 | 143 | 8 | 16 | 253 | 6 | 245 | 6.62e-19 | 86.3 |
| Msa0545290 | MtrunA17_Chr4g0054341 | 29.670 | 182 | 124 | 3 | 15 | 195 | 3 | 181 | 3.18e-18 | 82.0 |
| Msa0545290 | MtrunA17_Chr3g0112141 | 27.451 | 255 | 176 | 7 | 14 | 264 | 17 | 266 | 8.76e-18 | 80.9 |
| Msa0545290 | MtrunA17_Chr7g0239491 | 27.668 | 253 | 171 | 7 | 14 | 258 | 15 | 263 | 8.89e-18 | 80.9 |
| Msa0545290 | MtrunA17_Chr3g0112171 | 30.000 | 260 | 163 | 12 | 14 | 264 | 15 | 264 | 2.28e-17 | 79.7 |
| Msa0545290 | MtrunA17_Chr7g0239481 | 30.040 | 253 | 164 | 7 | 14 | 257 | 15 | 263 | 5.21e-17 | 78.6 |
| Msa0545290 | MtrunA17_Chr4g0032141 | 29.008 | 262 | 175 | 9 | 8 | 264 | 50 | 305 | 7.19e-17 | 79.0 |
| Msa0545290 | MtrunA17_Chr7g0259531 | 27.165 | 254 | 170 | 6 | 14 | 257 | 11 | 259 | 1.98e-16 | 77.0 |
| Msa0545290 | MtrunA17_Chr8g0386171 | 27.027 | 259 | 144 | 6 | 14 | 235 | 52 | 302 | 3.02e-16 | 77.8 |
| Msa0545290 | MtrunA17_Chr7g0239501 | 28.148 | 270 | 179 | 8 | 1 | 259 | 1 | 266 | 1.11e-15 | 75.1 |
| Msa0545290 | MtrunA17_Chr3g0124471 | 30.556 | 180 | 117 | 4 | 18 | 195 | 30 | 203 | 9.97e-15 | 72.8 |
| Msa0545290 | MtrunA17_Chr4g0032181 | 28.426 | 197 | 126 | 6 | 70 | 259 | 59 | 247 | 1.47e-14 | 71.6 |
| Msa0545290 | MtrunA17_Chr8g0386201 | 28.962 | 183 | 124 | 4 | 16 | 195 | 47 | 226 | 4.05e-14 | 71.2 |
| Msa0545290 | MtrunA17_Chr7g0239451 | 26.482 | 253 | 175 | 5 | 14 | 258 | 16 | 265 | 5.86e-14 | 70.1 |
| Msa0545290 | MtrunA17_Chr3g0124481 | 30.120 | 166 | 109 | 3 | 31 | 195 | 29 | 188 | 6.67e-14 | 70.1 |
| Msa0545290 | MtrunA17_Chr8g0355281 | 27.928 | 222 | 145 | 4 | 20 | 235 | 75 | 287 | 7.24e-13 | 67.8 |
| Msa0545290 | MtrunA17_Chr1g0182511 | 27.306 | 271 | 175 | 8 | 1 | 257 | 1 | 263 | 8.26e-11 | 60.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0545290 | AT3G51680.1 | 52.190 | 274 | 110 | 6 | 12 | 266 | 30 | 301 | 1.17e-88 | 266 |
| Msa0545290 | AT3G26760.1 | 46.591 | 264 | 129 | 3 | 6 | 258 | 28 | 290 | 1.38e-78 | 240 |
| Msa0545290 | AT2G47140.1 | 48.810 | 252 | 124 | 3 | 12 | 259 | 4 | 254 | 2.87e-77 | 235 |
| Msa0545290 | AT3G26770.1 | 49.219 | 256 | 120 | 3 | 12 | 258 | 39 | 293 | 9.22e-77 | 236 |
| Msa0545290 | AT1G52340.1 | 48.889 | 270 | 123 | 3 | 12 | 267 | 16 | 284 | 1.04e-76 | 234 |
| Msa0545290 | AT4G03140.1 | 52.941 | 255 | 111 | 3 | 12 | 258 | 76 | 329 | 2.68e-75 | 233 |
| Msa0545290 | AT3G29250.2 | 47.222 | 252 | 126 | 4 | 13 | 259 | 5 | 254 | 1.22e-72 | 223 |
| Msa0545290 | AT2G47130.1 | 48.016 | 252 | 123 | 4 | 13 | 259 | 5 | 253 | 2.09e-72 | 223 |
| Msa0545290 | AT3G29250.3 | 47.222 | 252 | 126 | 4 | 13 | 259 | 41 | 290 | 4.66e-72 | 223 |
| Msa0545290 | AT3G29250.1 | 47.059 | 255 | 127 | 5 | 11 | 259 | 40 | 292 | 3.23e-71 | 221 |
| Msa0545290 | AT2G47120.2 | 45.882 | 255 | 131 | 5 | 9 | 259 | 2 | 253 | 1.44e-69 | 216 |
| Msa0545290 | AT2G47120.1 | 46.215 | 251 | 128 | 5 | 13 | 259 | 5 | 252 | 6.39e-69 | 214 |
| Msa0545290 | AT3G29260.1 | 45.455 | 253 | 130 | 4 | 12 | 259 | 4 | 253 | 2.13e-68 | 213 |
| Msa0545290 | AT3G42960.1 | 44.151 | 265 | 131 | 6 | 7 | 258 | 1 | 261 | 4.24e-59 | 189 |
| Msa0545290 | AT3G55290.2 | 33.203 | 256 | 159 | 7 | 14 | 259 | 17 | 270 | 1.46e-31 | 118 |
| Msa0545290 | AT3G55290.1 | 33.203 | 256 | 159 | 7 | 14 | 259 | 18 | 271 | 1.63e-31 | 118 |
| Msa0545290 | AT1G63380.3 | 32.422 | 256 | 162 | 6 | 14 | 259 | 15 | 269 | 1.79e-30 | 115 |
| Msa0545290 | AT1G63380.1 | 32.422 | 256 | 162 | 6 | 14 | 259 | 17 | 271 | 1.94e-30 | 115 |
| Msa0545290 | AT1G63380.2 | 32.422 | 256 | 162 | 6 | 14 | 259 | 22 | 276 | 2.27e-30 | 115 |
| Msa0545290 | AT1G63380.4 | 32.422 | 256 | 162 | 6 | 14 | 259 | 19 | 273 | 2.30e-30 | 115 |
| Msa0545290 | AT2G17845.1 | 31.783 | 258 | 163 | 6 | 14 | 259 | 47 | 303 | 5.00e-30 | 115 |
| Msa0545290 | AT1G62610.2 | 31.250 | 256 | 165 | 6 | 14 | 259 | 13 | 267 | 1.29e-29 | 113 |
| Msa0545290 | AT1G62610.1 | 31.250 | 256 | 165 | 6 | 14 | 259 | 14 | 268 | 1.35e-29 | 113 |
| Msa0545290 | AT1G62610.3 | 31.250 | 256 | 165 | 6 | 14 | 259 | 15 | 269 | 1.41e-29 | 113 |
| Msa0545290 | AT1G62610.4 | 31.250 | 256 | 165 | 6 | 14 | 259 | 19 | 273 | 1.86e-29 | 112 |
| Msa0545290 | AT1G24360.1 | 29.457 | 258 | 164 | 6 | 11 | 259 | 71 | 319 | 2.82e-29 | 113 |
| Msa0545290 | AT3G55310.1 | 32.422 | 256 | 161 | 7 | 14 | 259 | 17 | 270 | 5.77e-29 | 111 |
| Msa0545290 | AT3G46170.1 | 31.890 | 254 | 161 | 7 | 13 | 256 | 25 | 276 | 9.26e-29 | 111 |
| Msa0545290 | AT3G05260.1 | 29.961 | 257 | 165 | 6 | 13 | 259 | 36 | 287 | 3.51e-25 | 101 |
| Msa0545290 | AT1G54870.2 | 31.890 | 254 | 159 | 7 | 13 | 256 | 83 | 332 | 4.25e-25 | 102 |
| Msa0545290 | AT1G54870.1 | 31.890 | 254 | 159 | 7 | 13 | 256 | 81 | 330 | 4.26e-25 | 102 |
| Msa0545290 | AT2G30670.1 | 30.000 | 260 | 175 | 4 | 14 | 270 | 7 | 262 | 2.54e-24 | 99.0 |
| Msa0545290 | AT2G29310.1 | 31.200 | 250 | 165 | 5 | 14 | 259 | 7 | 253 | 4.44e-24 | 98.2 |
| Msa0545290 | AT2G29340.2 | 29.528 | 254 | 172 | 4 | 14 | 264 | 7 | 256 | 8.78e-24 | 97.4 |
| Msa0545290 | AT2G47150.1 | 31.579 | 247 | 117 | 7 | 14 | 259 | 1 | 196 | 1.04e-23 | 95.5 |
| Msa0545290 | AT2G29340.1 | 29.528 | 254 | 172 | 4 | 14 | 264 | 7 | 256 | 1.83e-23 | 97.4 |
| Msa0545290 | AT1G07450.1 | 29.921 | 254 | 170 | 5 | 14 | 264 | 8 | 256 | 2.95e-23 | 95.9 |
| Msa0545290 | AT5G06060.1 | 29.804 | 255 | 170 | 6 | 14 | 264 | 9 | 258 | 4.28e-23 | 95.5 |
| Msa0545290 | AT2G29330.1 | 28.906 | 256 | 171 | 6 | 14 | 264 | 7 | 256 | 3.70e-22 | 92.8 |
| Msa0545290 | AT2G29300.1 | 31.746 | 252 | 162 | 7 | 14 | 259 | 7 | 254 | 5.43e-22 | 92.4 |
| Msa0545290 | AT5G18210.1 | 28.788 | 264 | 170 | 6 | 7 | 257 | 1 | 259 | 6.43e-22 | 92.4 |
| Msa0545290 | AT1G07440.1 | 28.346 | 254 | 174 | 5 | 14 | 264 | 12 | 260 | 1.26e-21 | 91.7 |
| Msa0545290 | AT2G29300.2 | 31.474 | 251 | 162 | 7 | 14 | 258 | 7 | 253 | 2.33e-21 | 91.3 |
| Msa0545290 | AT2G29370.1 | 27.799 | 259 | 170 | 6 | 14 | 264 | 16 | 265 | 3.37e-21 | 90.5 |
| Msa0545290 | AT2G29290.2 | 27.559 | 254 | 177 | 4 | 14 | 264 | 7 | 256 | 6.61e-21 | 89.7 |
| Msa0545290 | AT5G50590.2 | 33.520 | 179 | 108 | 5 | 13 | 185 | 44 | 217 | 1.34e-20 | 88.6 |
| Msa0545290 | AT5G50690.2 | 33.520 | 179 | 108 | 5 | 13 | 185 | 44 | 217 | 1.34e-20 | 88.6 |
| Msa0545290 | AT2G29260.1 | 28.090 | 267 | 183 | 6 | 2 | 264 | 56 | 317 | 1.49e-20 | 89.7 |
| Msa0545290 | AT4G13180.1 | 30.147 | 272 | 168 | 9 | 1 | 259 | 1 | 263 | 2.11e-20 | 88.2 |
| Msa0545290 | AT5G10050.1 | 31.148 | 183 | 118 | 4 | 15 | 195 | 6 | 182 | 3.01e-20 | 88.2 |
| Msa0545290 | AT5G50590.1 | 33.520 | 179 | 108 | 5 | 13 | 185 | 44 | 217 | 5.67e-20 | 87.8 |
| Msa0545290 | AT5G50690.1 | 33.520 | 179 | 108 | 5 | 13 | 185 | 44 | 217 | 5.67e-20 | 87.8 |
| Msa0545290 | AT2G29150.1 | 29.921 | 254 | 170 | 6 | 14 | 264 | 16 | 264 | 7.28e-20 | 87.0 |
| Msa0545290 | AT1G10310.1 | 32.536 | 209 | 135 | 5 | 1 | 207 | 3 | 207 | 1.01e-19 | 85.9 |
| Msa0545290 | AT2G29350.1 | 28.626 | 262 | 179 | 5 | 6 | 264 | 7 | 263 | 1.22e-19 | 86.3 |
| Msa0545290 | AT4G05530.1 | 30.196 | 255 | 158 | 9 | 12 | 257 | 7 | 250 | 1.77e-19 | 85.5 |
| Msa0545290 | AT2G29340.3 | 31.771 | 192 | 126 | 3 | 14 | 202 | 7 | 196 | 4.27e-19 | 83.6 |
| Msa0545290 | AT2G29340.4 | 31.771 | 192 | 126 | 3 | 14 | 202 | 7 | 196 | 4.27e-19 | 83.6 |
| Msa0545290 | AT2G29360.1 | 27.863 | 262 | 166 | 7 | 14 | 264 | 16 | 265 | 5.32e-19 | 84.7 |
| Msa0545290 | AT2G29320.1 | 29.434 | 265 | 165 | 6 | 11 | 264 | 10 | 263 | 9.56e-19 | 84.0 |
| Msa0545290 | AT5G50770.1 | 33.171 | 205 | 130 | 6 | 16 | 216 | 47 | 248 | 2.89e-18 | 83.6 |
| Msa0545290 | AT5G18210.2 | 28.205 | 273 | 173 | 7 | 7 | 266 | 1 | 263 | 2.94e-18 | 82.8 |
| Msa0545290 | AT5G65205.1 | 32.973 | 185 | 112 | 6 | 15 | 195 | 7 | 183 | 3.48e-18 | 82.4 |
| Msa0545290 | AT3G47350.1 | 29.851 | 201 | 125 | 6 | 16 | 208 | 46 | 238 | 6.81e-18 | 82.0 |
| Msa0545290 | AT3G47350.2 | 29.851 | 201 | 125 | 6 | 16 | 208 | 46 | 238 | 6.83e-18 | 82.4 |
| Msa0545290 | AT1G49670.1 | 31.687 | 243 | 142 | 7 | 16 | 244 | 6 | 238 | 8.01e-18 | 83.6 |
| Msa0545290 | AT1G49670.2 | 31.687 | 243 | 142 | 7 | 16 | 244 | 6 | 238 | 8.13e-18 | 83.6 |
| Msa0545290 | AT2G29310.3 | 32.292 | 192 | 125 | 3 | 14 | 202 | 7 | 196 | 3.02e-17 | 78.2 |
| Msa0545290 | AT3G12800.1 | 30.075 | 266 | 155 | 9 | 14 | 259 | 10 | 264 | 4.28e-17 | 79.7 |
| Msa0545290 | AT2G29310.2 | 29.464 | 224 | 151 | 5 | 40 | 259 | 31 | 251 | 1.22e-16 | 77.8 |
| Msa0545290 | AT5G50700.1 | 27.391 | 230 | 150 | 7 | 14 | 235 | 45 | 265 | 1.92e-16 | 78.6 |
| Msa0545290 | AT5G50600.1 | 27.391 | 230 | 150 | 7 | 14 | 235 | 45 | 265 | 1.92e-16 | 78.6 |
| Msa0545290 | AT3G47360.1 | 30.102 | 196 | 121 | 6 | 17 | 204 | 48 | 235 | 6.22e-16 | 76.6 |
| Msa0545290 | AT3G04000.1 | 27.675 | 271 | 179 | 6 | 1 | 256 | 1 | 269 | 8.93e-16 | 75.5 |
| Msa0545290 | AT2G29290.1 | 27.041 | 196 | 138 | 3 | 70 | 264 | 48 | 239 | 4.54e-15 | 73.2 |
| Msa0545290 | AT2G29350.2 | 29.949 | 197 | 133 | 3 | 9 | 202 | 10 | 204 | 5.12e-15 | 72.8 |
| Msa0545290 | AT3G03980.1 | 26.354 | 277 | 176 | 7 | 1 | 257 | 1 | 269 | 2.30e-14 | 71.6 |
| Msa0545290 | AT5G04900.1 | 31.361 | 169 | 111 | 2 | 20 | 183 | 83 | 251 | 2.54e-14 | 72.4 |
| Msa0545290 | AT2G29350.3 | 29.082 | 196 | 133 | 4 | 70 | 264 | 35 | 225 | 4.04e-14 | 70.5 |
| Msa0545290 | AT2G29320.3 | 32.308 | 195 | 124 | 5 | 11 | 200 | 10 | 201 | 5.97e-14 | 69.3 |
Find 90 sgRNAs with CRISPR-Local
Find 241 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AAGCTTGGGGCTTTATTTAA+TGG | 0.186274 | 4_1:-35293161 | Msa0545290:five_prime_UTR |
| ATTCATTCATTATTGGTAAA+TGG | 0.225496 | 4_1:-35293319 | None:intergenic |
| AGCTTGGGCCATTTGGTATT+CGG | 0.232114 | 4_1:-35291932 | Msa0545290:CDS |
| GCAGCTTCAGCCACATCTTT+TGG | 0.275458 | 4_1:+35291795 | None:intergenic |
| AACTTGACTGGCGTCTTTCT+TGG | 0.291159 | 4_1:-35292107 | Msa0545290:CDS |
| ACAAATTTCTTTAAGCTTGA+TGG | 0.305258 | 4_1:-35291867 | Msa0545290:CDS |
| TTTAATCACATCTTCAAATT+CGG | 0.341039 | 4_1:+35292133 | None:intergenic |
| GATGTTTATTCTAACCTAAA+AGG | 0.341199 | 4_1:-35291831 | Msa0545290:CDS |
| GCTTGGGCCATTTGGTATTC+GGG | 0.360522 | 4_1:-35291931 | Msa0545290:CDS |
| GCCATCGAGCTTGGGCCATT+TGG | 0.371069 | 4_1:-35291939 | Msa0545290:CDS |
| GATATCTAGTTTACCGTACT+TGG | 0.373680 | 4_1:+35292217 | None:intergenic |
| TTCTTTAAGCTTGATGGTGG+TGG | 0.385481 | 4_1:-35291861 | Msa0545290:CDS |
| CTTGGAAACGGTTGTGTTCA+CGG | 0.391770 | 4_1:+35292235 | None:intergenic |
| TCTTTAAGCTTGATGGTGGT+GGG | 0.398255 | 4_1:-35291860 | Msa0545290:CDS |
| GGCTGAAGCTGCTCTGTACT+TGG | 0.402325 | 4_1:-35291784 | Msa0545290:CDS |
| GGTCATAATCTTGTCATAGA+TGG | 0.407106 | 4_1:-35291735 | Msa0545290:CDS |
| AACTTGTTTATACCTTCTTA+AGG | 0.422188 | 4_1:+35293026 | None:intergenic |
| ATTGATGATAAAGTAATTGT+TGG | 0.424504 | 4_1:-35291604 | Msa0545290:three_prime_UTR |
| TAGAGTGTCCTTTGTCGTCT+TGG | 0.425344 | 4_1:+35292333 | None:intergenic |
| GTGGTAACACACGGAACTTA+TGG | 0.428207 | 4_1:+35293247 | None:intergenic |
| ACCGGTGGTGCGAGCGGCAT+CGG | 0.434462 | 4_1:-35292413 | Msa0545290:CDS |
| TTAAAGAAATTTGTAACCAT+TGG | 0.434965 | 4_1:+35291876 | None:intergenic |
| ATTAACACGGCTAGTGTTTG+TGG | 0.440870 | 4_1:-35292035 | Msa0545290:CDS |
| TTAATATGTAGTTGCCTTCG+TGG | 0.442808 | 4_1:+35293221 | None:intergenic |
| GATGAGTCTAAGTATGTTAG+TGG | 0.446032 | 4_1:-35291756 | Msa0545290:CDS |
| GGGAAGGTGGCTCTGATCAC+CGG | 0.449053 | 4_1:-35292431 | Msa0545290:CDS |
| AGTTCAAAGCACGCCGTTGT+TGG | 0.452888 | 4_1:-35291978 | Msa0545290:CDS |
| AGAAACACGGCCATCGAGCT+TGG | 0.453101 | 4_1:-35291948 | Msa0545290:CDS |
| GTTCAAAGCACGCCGTTGTT+GGG | 0.459124 | 4_1:-35291977 | Msa0545290:CDS |
| GAAACACGGCCATCGAGCTT+GGG | 0.462576 | 4_1:-35291947 | Msa0545290:CDS |
| AACACAACCGTTTCCAAGTA+CGG | 0.463216 | 4_1:-35292230 | Msa0545290:CDS |
| GGTTATGATCCCCGCTCGAC+GGG | 0.465924 | 4_1:-35292066 | Msa0545290:CDS |
| AACGACTTGAGCTCCTTGCT+TGG | 0.474776 | 4_1:+35292367 | None:intergenic |
| TCTCATAATGTGACAAATCA+AGG | 0.479921 | 4_1:+35291435 | None:intergenic |
| ATTTACAAGGCTTGAGGGGA+AGG | 0.480148 | 4_1:-35292447 | Msa0545290:intron |
| AATTCATTTACAAGGCTTGA+GGG | 0.492849 | 4_1:-35292452 | Msa0545290:intron |
| ACCGATGCCGCTCGCACCAC+CGG | 0.493419 | 4_1:+35292412 | None:intergenic |
| ATTATGCTACCCCGTCGAGC+GGG | 0.496710 | 4_1:+35292056 | None:intergenic |
| ATTCATTATTGGTAAATGGT+TGG | 0.497500 | 4_1:-35293315 | None:intergenic |
| ATTGGAGTCGCAAGAACATA+AGG | 0.499291 | 4_1:+35291894 | None:intergenic |
| AACAATGGCAACCGTTCCAT+TGG | 0.500328 | 4_1:-35293058 | Msa0545290:exon |
| AGTGTTTGTGGAAGCATTGG+TGG | 0.502765 | 4_1:-35292023 | Msa0545290:CDS |
| TAGTTTACCGTACTTGGAAA+CGG | 0.505519 | 4_1:+35292223 | None:intergenic |
| CGAGGAGAAATATAGCTGTA+TGG | 0.513476 | 4_1:+35293104 | None:intergenic |
| GGGTTATGATCCCCGCTCGA+CGG | 0.522021 | 4_1:-35292067 | Msa0545290:CDS |
| CAATTCACCCGAATACCAAA+TGG | 0.524070 | 4_1:+35291924 | None:intergenic |
| GTGATTAAAGTAAACTTGAC+TGG | 0.532400 | 4_1:-35292119 | Msa0545290:CDS |
| TTGGAACAAAGCATGCATCA+AGG | 0.537428 | 4_1:-35292088 | Msa0545290:CDS |
| GAATTCATTTACAAGGCTTG+AGG | 0.537823 | 4_1:-35292453 | Msa0545290:intron |
| TTATGTTCTTGCGACTCCAA+TGG | 0.545527 | 4_1:-35291892 | Msa0545290:CDS |
| CTTTAAGCTTGATGGTGGTG+GGG | 0.546290 | 4_1:-35291859 | Msa0545290:CDS |
| GCTGAAGCTGCTCTGTACTT+GGG | 0.550906 | 4_1:-35291783 | Msa0545290:CDS |
| CTTAAGGCATTAGAGACCAA+TGG | 0.551569 | 4_1:+35293042 | None:intergenic |
| GGATTCAGCGTTGGAAACAA+TGG | 0.558181 | 4_1:-35291711 | Msa0545290:CDS |
| TGGAACAAAGCATGCATCAA+GGG | 0.564084 | 4_1:-35292087 | Msa0545290:CDS |
| CTGATCACCGGTGGTGCGAG+CGG | 0.567749 | 4_1:-35292419 | Msa0545290:CDS |
| TGTCACGTCACAGCGAACAT+AGG | 0.574891 | 4_1:+35292280 | None:intergenic |
| AATTTCTTTAAGCTTGATGG+TGG | 0.575513 | 4_1:-35291864 | Msa0545290:CDS |
| TGGTCTCTAATGCCTTAAGA+AGG | 0.576031 | 4_1:-35293038 | Msa0545290:intron |
| GCAAGACTCTTCTCCAAGCA+AGG | 0.577004 | 4_1:-35292380 | Msa0545290:CDS |
| ACCAAATGGCCCAAGCTCGA+TGG | 0.578224 | 4_1:+35291938 | None:intergenic |
| CTTGGAGAAGAGTCTTGCAG+TGG | 0.582876 | 4_1:+35292385 | None:intergenic |
| TACAAGGCTTGAGGGGAAGG+TGG | 0.585321 | 4_1:-35292444 | Msa0545290:intron |
| GATATCATGTTTAACAACGC+TGG | 0.588151 | 4_1:-35292200 | Msa0545290:CDS |
| CATAATCTTGTCATAGATGG+AGG | 0.590591 | 4_1:-35291732 | Msa0545290:CDS |
| GCTAGTGTTTGTGGAAGCAT+TGG | 0.592012 | 4_1:-35292026 | Msa0545290:CDS |
| TTCAAGTTTCTGGATAGTCG+AGG | 0.593049 | 4_1:+35293086 | None:intergenic |
| TTATGCTACCCCGTCGAGCG+GGG | 0.597671 | 4_1:+35292057 | None:intergenic |
| ATAGATGGAGGATTCAGCGT+TGG | 0.602250 | 4_1:-35291720 | Msa0545290:CDS |
| TTTAACAACGCTGGCATAAG+CGG | 0.605608 | 4_1:-35292191 | Msa0545290:CDS |
| GGCATTAGAGACCAATGGAA+CGG | 0.606755 | 4_1:+35293047 | None:intergenic |
| TATCATCAATCATATAATGT+CGG | 0.609756 | 4_1:+35291617 | None:intergenic |
| TGTTCGCTGTGACGTGACAA+AGG | 0.613627 | 4_1:-35292276 | Msa0545290:CDS |
| TTTGAACTTGTGTAGGCATG+TGG | 0.618438 | 4_1:+35291993 | None:intergenic |
| ATAAGTTCCGTGTGTTACCA+CGG | 0.619742 | 4_1:-35293245 | Msa0545290:five_prime_UTR |
| GGCGTGCTTTGAACTTGTGT+AGG | 0.622128 | 4_1:+35291986 | None:intergenic |
| ACAGCGAACATAGGAAGAAG+AGG | 0.628803 | 4_1:+35292289 | None:intergenic |
| GAAACTTGAAAAGCTAACAA+TGG | 0.631961 | 4_1:-35293073 | Msa0545290:exon |
| TCGTGGACCGTGGTAACACA+CGG | 0.636500 | 4_1:+35293238 | None:intergenic |
| TGGTGCGAGCGGCATCGGTG+AGG | 0.642225 | 4_1:-35292408 | Msa0545290:CDS |
| ATTCATTTACAAGGCTTGAG+GGG | 0.651199 | 4_1:-35292451 | Msa0545290:intron |
| AAGGTGGCTCTGATCACCGG+TGG | 0.652302 | 4_1:-35292428 | Msa0545290:CDS |
| GTTTCTCATCAGCCCAACAA+CGG | 0.652719 | 4_1:+35291965 | None:intergenic |
| GCTGACATCCAAGACGACAA+AGG | 0.668183 | 4_1:-35292341 | Msa0545290:CDS |
| GTAGTTGCCTTCGTGGACCG+TGG | 0.672954 | 4_1:+35293228 | None:intergenic |
| GTTATGATCCCCGCTCGACG+GGG | 0.674081 | 4_1:-35292065 | Msa0545290:CDS |
| AATTATGCTACCCCGTCGAG+CGG | 0.674229 | 4_1:+35292055 | None:intergenic |
| TGTTGGGCTGATGAGAAACA+CGG | 0.693612 | 4_1:-35291961 | Msa0545290:CDS |
| TGTGTTACCACGGTCCACGA+AGG | 0.703120 | 4_1:-35293235 | Msa0545290:five_prime_UTR |
| ACGGGGTAGCATAATTAACA+CGG | 0.731747 | 4_1:-35292048 | Msa0545290:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TTTTTAAAAATTAAAACATG+TGG | - | chr4_1:35291419-35291438 | Msa0545290:three_prime_UTR | 10.0% |
| !!! | ATTTATTTTCTGTATATTAA+TGG | - | chr4_1:35291705-35291724 | Msa0545290:CDS | 10.0% |
| !!! | TATTTTTTTTATAACCTATA+AGG | + | chr4_1:35291907-35291926 | None:intergenic | 10.0% |
| !!! | TTTTTAAAAATTAAAACATG+TGG | - | chr4_1:35291419-35291438 | Msa0545290:three_prime_UTR | 10.0% |
| !!! | ATTTATTTTCTGTATATTAA+TGG | - | chr4_1:35291705-35291724 | Msa0545290:CDS | 10.0% |
| !!! | TATTTTTTTTATAACCTATA+AGG | + | chr4_1:35291907-35291926 | None:intergenic | 10.0% |
| !! | TACAGAAAATAAATGAAATA+AGG | + | chr4_1:35291699-35291718 | None:intergenic | 15.0% |
| !! | GATTTATGAAAAAATATAAG+TGG | - | chr4_1:35291801-35291820 | Msa0545290:CDS | 15.0% |
| !!! | TTATTTTACTTAAATTTGTG+TGG | + | chr4_1:35291850-35291869 | None:intergenic | 15.0% |
| !!! | ATTTTATATAATAAGCACAA+TGG | - | chr4_1:35292158-35292177 | Msa0545290:CDS | 15.0% |
| !!! | TTTTATATAATAAGCACAAT+GGG | - | chr4_1:35292159-35292178 | Msa0545290:CDS | 15.0% |
| !! | TACAGAAAATAAATGAAATA+AGG | + | chr4_1:35291699-35291718 | None:intergenic | 15.0% |
| !! | GATTTATGAAAAAATATAAG+TGG | - | chr4_1:35291801-35291820 | Msa0545290:CDS | 15.0% |
| !!! | TTATTTTACTTAAATTTGTG+TGG | + | chr4_1:35291850-35291869 | None:intergenic | 15.0% |
| !!! | ATTTTATATAATAAGCACAA+TGG | - | chr4_1:35292158-35292177 | Msa0545290:CDS | 15.0% |
| !!! | TTTTATATAATAAGCACAAT+GGG | - | chr4_1:35292159-35292178 | Msa0545290:CDS | 15.0% |
| !!! | TCATTTTTTCAATAGTACTA+AGG | + | chr4_1:35291506-35291525 | None:intergenic | 20.0% |
| !! | TTGAAAAAATGATTAAAGCT+TGG | - | chr4_1:35291514-35291533 | Msa0545290:three_prime_UTR | 20.0% |
| !! | TGAAAAAATGATTAAAGCTT+GGG | - | chr4_1:35291515-35291534 | Msa0545290:three_prime_UTR | 20.0% |
| !! | CATAAATCGTATATTTATGT+AGG | + | chr4_1:35291789-35291808 | None:intergenic | 20.0% |
| !!! | GATAGATGACTTTTTAAAAA+GGG | + | chr4_1:35292008-35292027 | None:intergenic | 20.0% |
| !!! | TGATAGATGACTTTTTAAAA+AGG | + | chr4_1:35292009-35292028 | None:intergenic | 20.0% |
| !! | AACTTCATTACAATTCTATA+AGG | + | chr4_1:35292191-35292210 | None:intergenic | 20.0% |
| !! | TTTAATCACATCTTCAAATT+CGG | + | chr4_1:35292560-35292579 | None:intergenic | 20.0% |
| !! | TTAAAGAAATTTGTAACCAT+TGG | + | chr4_1:35292817-35292836 | None:intergenic | 20.0% |
| !! | TATCATCAATCATATAATGT+CGG | + | chr4_1:35293076-35293095 | None:intergenic | 20.0% |
| !!! | ATTGATGATAAAGTAATTGT+TGG | - | chr4_1:35293086-35293105 | Msa0545290:five_prime_UTR | 20.0% |
| !!! | TCATTTTTTCAATAGTACTA+AGG | + | chr4_1:35291506-35291525 | None:intergenic | 20.0% |
| !! | TTGAAAAAATGATTAAAGCT+TGG | - | chr4_1:35291514-35291533 | Msa0545290:three_prime_UTR | 20.0% |
| !! | TGAAAAAATGATTAAAGCTT+GGG | - | chr4_1:35291515-35291534 | Msa0545290:three_prime_UTR | 20.0% |
| !! | CATAAATCGTATATTTATGT+AGG | + | chr4_1:35291789-35291808 | None:intergenic | 20.0% |
| !!! | GATAGATGACTTTTTAAAAA+GGG | + | chr4_1:35292008-35292027 | None:intergenic | 20.0% |
| !!! | TGATAGATGACTTTTTAAAA+AGG | + | chr4_1:35292009-35292028 | None:intergenic | 20.0% |
| !! | AACTTCATTACAATTCTATA+AGG | + | chr4_1:35292191-35292210 | None:intergenic | 20.0% |
| !! | TTTAATCACATCTTCAAATT+CGG | + | chr4_1:35292560-35292579 | None:intergenic | 20.0% |
| !! | TTAAAGAAATTTGTAACCAT+TGG | + | chr4_1:35292817-35292836 | None:intergenic | 20.0% |
| !! | TATCATCAATCATATAATGT+CGG | + | chr4_1:35293076-35293095 | None:intergenic | 20.0% |
| !!! | ATTGATGATAAAGTAATTGT+TGG | - | chr4_1:35293086-35293105 | Msa0545290:five_prime_UTR | 20.0% |
| !!! | TTTTTCAATAGTACTAAGGT+TGG | + | chr4_1:35291502-35291521 | None:intergenic | 25.0% |
| ! | GAAAAAATGATTAAAGCTTG+GGG | - | chr4_1:35291516-35291535 | Msa0545290:three_prime_UTR | 25.0% |
| !! | AACTTGTTTATACCTTCTTA+AGG | + | chr4_1:35291667-35291686 | None:intergenic | 25.0% |
| !! | CGTATATTTATGTAGGATTT+TGG | + | chr4_1:35291782-35291801 | None:intergenic | 25.0% |
| ! | AAATATAAGTGGACATTTGA+AGG | - | chr4_1:35291812-35291831 | Msa0545290:CDS | 25.0% |
| !!! | CTAATATGTTATAGCCTTAT+AGG | - | chr4_1:35291890-35291909 | Msa0545290:CDS | 25.0% |
| ! | TTGAAAAATGAGAATCTGAA+GGG | + | chr4_1:35292090-35292109 | None:intergenic | 25.0% |
| ! | TTTGAAAAATGAGAATCTGA+AGG | + | chr4_1:35292091-35292110 | None:intergenic | 25.0% |
| ! | ACAAATTTCTTTAAGCTTGA+TGG | - | chr4_1:35292823-35292842 | Msa0545290:intron | 25.0% |
| ! | GATGTTTATTCTAACCTAAA+AGG | - | chr4_1:35292859-35292878 | Msa0545290:intron | 25.0% |
| !! | TAATTTTATGCCAAAAGATG+TGG | - | chr4_1:35292885-35292904 | Msa0545290:intron | 25.0% |
| !!! | TTTTTCAATAGTACTAAGGT+TGG | + | chr4_1:35291502-35291521 | None:intergenic | 25.0% |
| ! | GAAAAAATGATTAAAGCTTG+GGG | - | chr4_1:35291516-35291535 | Msa0545290:three_prime_UTR | 25.0% |
| !! | AACTTGTTTATACCTTCTTA+AGG | + | chr4_1:35291667-35291686 | None:intergenic | 25.0% |
| !! | CGTATATTTATGTAGGATTT+TGG | + | chr4_1:35291782-35291801 | None:intergenic | 25.0% |
| ! | AAATATAAGTGGACATTTGA+AGG | - | chr4_1:35291812-35291831 | Msa0545290:CDS | 25.0% |
| !!! | CTAATATGTTATAGCCTTAT+AGG | - | chr4_1:35291890-35291909 | Msa0545290:CDS | 25.0% |
| ! | TTGAAAAATGAGAATCTGAA+GGG | + | chr4_1:35292090-35292109 | None:intergenic | 25.0% |
| ! | TTTGAAAAATGAGAATCTGA+AGG | + | chr4_1:35292091-35292110 | None:intergenic | 25.0% |
| ! | ACAAATTTCTTTAAGCTTGA+TGG | - | chr4_1:35292823-35292842 | Msa0545290:intron | 25.0% |
| ! | GATGTTTATTCTAACCTAAA+AGG | - | chr4_1:35292859-35292878 | Msa0545290:intron | 25.0% |
| !! | TAATTTTATGCCAAAAGATG+TGG | - | chr4_1:35292885-35292904 | Msa0545290:intron | 25.0% |
| !!! | TTGTTAGCTTTTCAAGTTTC+TGG | + | chr4_1:35291617-35291636 | None:intergenic | 30.0% |
| GAAACTTGAAAAGCTAACAA+TGG | - | chr4_1:35291617-35291636 | Msa0545290:three_prime_UTR | 30.0% | |
| !! | TAGGATTTTGGAGATAATCA+CGG | + | chr4_1:35291770-35291789 | None:intergenic | 30.0% |
| AATGAATTCAGCATGACAAA+TGG | + | chr4_1:35292226-35292245 | None:intergenic | 30.0% | |
| TCATGCTGAATTCATTTACA+AGG | - | chr4_1:35292230-35292249 | Msa0545290:CDS | 30.0% | |
| AATTCATTTACAAGGCTTGA+GGG | - | chr4_1:35292238-35292257 | Msa0545290:CDS | 30.0% | |
| GTGATTAAAGTAAACTTGAC+TGG | - | chr4_1:35292571-35292590 | Msa0545290:intron | 30.0% | |
| AATTTCTTTAAGCTTGATGG+TGG | - | chr4_1:35292826-35292845 | Msa0545290:intron | 30.0% | |
| ! | GCATAAAATTAGCACCTTTT+AGG | + | chr4_1:35292876-35292895 | None:intergenic | 30.0% |
| !!! | GCAGTCATTTTTATTTCCAT+AGG | - | chr4_1:35293159-35293178 | Msa0545290:five_prime_UTR | 30.0% |
| CCTCGAATAAAAATAACCTA+TGG | + | chr4_1:35293178-35293197 | None:intergenic | 30.0% | |
| !!! | CCATAGGTTATTTTTATTCG+AGG | - | chr4_1:35293175-35293194 | Msa0545290:five_prime_UTR | 30.0% |
| TCTCATAATGTGACAAATCA+AGG | + | chr4_1:35293258-35293277 | None:intergenic | 30.0% | |
| !!! | TTGTTAGCTTTTCAAGTTTC+TGG | + | chr4_1:35291617-35291636 | None:intergenic | 30.0% |
| GAAACTTGAAAAGCTAACAA+TGG | - | chr4_1:35291617-35291636 | Msa0545290:three_prime_UTR | 30.0% | |
| !! | TAGGATTTTGGAGATAATCA+CGG | + | chr4_1:35291770-35291789 | None:intergenic | 30.0% |
| AATGAATTCAGCATGACAAA+TGG | + | chr4_1:35292226-35292245 | None:intergenic | 30.0% | |
| TCATGCTGAATTCATTTACA+AGG | - | chr4_1:35292230-35292249 | Msa0545290:CDS | 30.0% | |
| AATTCATTTACAAGGCTTGA+GGG | - | chr4_1:35292238-35292257 | Msa0545290:CDS | 30.0% | |
| GTGATTAAAGTAAACTTGAC+TGG | - | chr4_1:35292571-35292590 | Msa0545290:intron | 30.0% | |
| AATTTCTTTAAGCTTGATGG+TGG | - | chr4_1:35292826-35292845 | Msa0545290:intron | 30.0% | |
| ! | GCATAAAATTAGCACCTTTT+AGG | + | chr4_1:35292876-35292895 | None:intergenic | 30.0% |
| !!! | GCAGTCATTTTTATTTCCAT+AGG | - | chr4_1:35293159-35293178 | Msa0545290:five_prime_UTR | 30.0% |
| CCTCGAATAAAAATAACCTA+TGG | + | chr4_1:35293178-35293197 | None:intergenic | 30.0% | |
| !!! | CCATAGGTTATTTTTATTCG+AGG | - | chr4_1:35293175-35293194 | Msa0545290:five_prime_UTR | 30.0% |
| TCTCATAATGTGACAAATCA+AGG | + | chr4_1:35293258-35293277 | None:intergenic | 30.0% | |
| TTAATATGTAGTTGCCTTCG+TGG | + | chr4_1:35291472-35291491 | None:intergenic | 35.0% | |
| !! | AAGCTTGGGGCTTTATTTAA+TGG | - | chr4_1:35291529-35291548 | Msa0545290:three_prime_UTR | 35.0% |
| AGATAATCACGGACTTAAGT+TGG | + | chr4_1:35291759-35291778 | None:intergenic | 35.0% | |
| GAATTCATTTACAAGGCTTG+AGG | - | chr4_1:35292237-35292256 | Msa0545290:CDS | 35.0% | |
| ATTCATTTACAAGGCTTGAG+GGG | - | chr4_1:35292239-35292258 | Msa0545290:CDS | 35.0% | |
| TAGTTTACCGTACTTGGAAA+CGG | + | chr4_1:35292470-35292489 | None:intergenic | 35.0% | |
| ! | GATATCTAGTTTACCGTACT+TGG | + | chr4_1:35292476-35292495 | None:intergenic | 35.0% |
| GATATCATGTTTAACAACGC+TGG | - | chr4_1:35292490-35292509 | Msa0545290:intron | 35.0% | |
| GATGAGTCTAAGTATGTTAG+TGG | - | chr4_1:35292934-35292953 | Msa0545290:intron | 35.0% | |
| GGTCATAATCTTGTCATAGA+TGG | - | chr4_1:35292955-35292974 | Msa0545290:intron | 35.0% | |
| CATAATCTTGTCATAGATGG+AGG | - | chr4_1:35292958-35292977 | Msa0545290:intron | 35.0% | |
| CATGTCTTCTATAATTCGTG+CGG | - | chr4_1:35293307-35293326 | Msa0545290:five_prime_UTR | 35.0% | |
| TTAATATGTAGTTGCCTTCG+TGG | + | chr4_1:35291472-35291491 | None:intergenic | 35.0% | |
| !! | AAGCTTGGGGCTTTATTTAA+TGG | - | chr4_1:35291529-35291548 | Msa0545290:three_prime_UTR | 35.0% |
| AGATAATCACGGACTTAAGT+TGG | + | chr4_1:35291759-35291778 | None:intergenic | 35.0% | |
| GAATTCATTTACAAGGCTTG+AGG | - | chr4_1:35292237-35292256 | Msa0545290:CDS | 35.0% | |
| ATTCATTTACAAGGCTTGAG+GGG | - | chr4_1:35292239-35292258 | Msa0545290:CDS | 35.0% | |
| TAGTTTACCGTACTTGGAAA+CGG | + | chr4_1:35292470-35292489 | None:intergenic | 35.0% | |
| ! | GATATCTAGTTTACCGTACT+TGG | + | chr4_1:35292476-35292495 | None:intergenic | 35.0% |
| GATATCATGTTTAACAACGC+TGG | - | chr4_1:35292490-35292509 | Msa0545290:intron | 35.0% | |
| GATGAGTCTAAGTATGTTAG+TGG | - | chr4_1:35292934-35292953 | Msa0545290:intron | 35.0% | |
| GGTCATAATCTTGTCATAGA+TGG | - | chr4_1:35292955-35292974 | Msa0545290:intron | 35.0% | |
| CATAATCTTGTCATAGATGG+AGG | - | chr4_1:35292958-35292977 | Msa0545290:intron | 35.0% | |
| ATAAGTTCCGTGTGTTACCA+CGG | - | chr4_1:35291445-35291464 | Msa0545290:three_prime_UTR | 40.0% | |
| CGAGGAGAAATATAGCTGTA+TGG | + | chr4_1:35291589-35291608 | None:intergenic | 40.0% | |
| ! | TTCAAGTTTCTGGATAGTCG+AGG | + | chr4_1:35291607-35291626 | None:intergenic | 40.0% |
| ! | CTTAAGGCATTAGAGACCAA+TGG | + | chr4_1:35291651-35291670 | None:intergenic | 40.0% |
| TGGTCTCTAATGCCTTAAGA+AGG | - | chr4_1:35291652-35291671 | Msa0545290:three_prime_UTR | 40.0% | |
| AACACAACCGTTTCCAAGTA+CGG | - | chr4_1:35292460-35292479 | Msa0545290:intron | 40.0% | |
| TTTAACAACGCTGGCATAAG+CGG | - | chr4_1:35292499-35292518 | Msa0545290:intron | 40.0% | |
| TTGGAACAAAGCATGCATCA+AGG | - | chr4_1:35292602-35292621 | Msa0545290:intron | 40.0% | |
| TGGAACAAAGCATGCATCAA+GGG | - | chr4_1:35292603-35292622 | Msa0545290:intron | 40.0% | |
| ACGGGGTAGCATAATTAACA+CGG | - | chr4_1:35292642-35292661 | Msa0545290:intron | 40.0% | |
| ATTAACACGGCTAGTGTTTG+TGG | - | chr4_1:35292655-35292674 | Msa0545290:intron | 40.0% | |
| TTTGAACTTGTGTAGGCATG+TGG | + | chr4_1:35292700-35292719 | None:intergenic | 40.0% | |
| CAATTCACCCGAATACCAAA+TGG | + | chr4_1:35292769-35292788 | None:intergenic | 40.0% | |
| ATTGGAGTCGCAAGAACATA+AGG | + | chr4_1:35292799-35292818 | None:intergenic | 40.0% | |
| TTATGTTCTTGCGACTCCAA+TGG | - | chr4_1:35292798-35292817 | Msa0545290:intron | 40.0% | |
| !! | TTCTTTAAGCTTGATGGTGG+TGG | - | chr4_1:35292829-35292848 | Msa0545290:intron | 40.0% |
| !! | TCTTTAAGCTTGATGGTGGT+GGG | - | chr4_1:35292830-35292849 | Msa0545290:intron | 40.0% |
| ATAAGTTCCGTGTGTTACCA+CGG | - | chr4_1:35291445-35291464 | Msa0545290:three_prime_UTR | 40.0% | |
| CGAGGAGAAATATAGCTGTA+TGG | + | chr4_1:35291589-35291608 | None:intergenic | 40.0% | |
| ! | TTCAAGTTTCTGGATAGTCG+AGG | + | chr4_1:35291607-35291626 | None:intergenic | 40.0% |
| ! | CTTAAGGCATTAGAGACCAA+TGG | + | chr4_1:35291651-35291670 | None:intergenic | 40.0% |
| TGGTCTCTAATGCCTTAAGA+AGG | - | chr4_1:35291652-35291671 | Msa0545290:three_prime_UTR | 40.0% | |
| AACACAACCGTTTCCAAGTA+CGG | - | chr4_1:35292460-35292479 | Msa0545290:intron | 40.0% | |
| TTTAACAACGCTGGCATAAG+CGG | - | chr4_1:35292499-35292518 | Msa0545290:intron | 40.0% | |
| TTGGAACAAAGCATGCATCA+AGG | - | chr4_1:35292602-35292621 | Msa0545290:intron | 40.0% | |
| TGGAACAAAGCATGCATCAA+GGG | - | chr4_1:35292603-35292622 | Msa0545290:intron | 40.0% | |
| ACGGGGTAGCATAATTAACA+CGG | - | chr4_1:35292642-35292661 | Msa0545290:intron | 40.0% | |
| ATTAACACGGCTAGTGTTTG+TGG | - | chr4_1:35292655-35292674 | Msa0545290:intron | 40.0% | |
| TTTGAACTTGTGTAGGCATG+TGG | + | chr4_1:35292700-35292719 | None:intergenic | 40.0% | |
| CAATTCACCCGAATACCAAA+TGG | + | chr4_1:35292769-35292788 | None:intergenic | 40.0% | |
| ATTGGAGTCGCAAGAACATA+AGG | + | chr4_1:35292799-35292818 | None:intergenic | 40.0% | |
| TTATGTTCTTGCGACTCCAA+TGG | - | chr4_1:35292798-35292817 | Msa0545290:intron | 40.0% | |
| !! | TTCTTTAAGCTTGATGGTGG+TGG | - | chr4_1:35292829-35292848 | Msa0545290:intron | 40.0% |
| !! | TCTTTAAGCTTGATGGTGGT+GGG | - | chr4_1:35292830-35292849 | Msa0545290:intron | 40.0% |
| GTGGTAACACACGGAACTTA+TGG | + | chr4_1:35291446-35291465 | None:intergenic | 45.0% | |
| AACAATGGCAACCGTTCCAT+TGG | - | chr4_1:35291632-35291651 | Msa0545290:three_prime_UTR | 45.0% | |
| GGCATTAGAGACCAATGGAA+CGG | + | chr4_1:35291646-35291665 | None:intergenic | 45.0% | |
| ATTTACAAGGCTTGAGGGGA+AGG | - | chr4_1:35292243-35292262 | Msa0545290:CDS | 45.0% | |
| ! | TAGAGTGTCCTTTGTCGTCT+TGG | + | chr4_1:35292360-35292379 | None:intergenic | 45.0% |
| ACAGCGAACATAGGAAGAAG+AGG | + | chr4_1:35292404-35292423 | None:intergenic | 45.0% | |
| CTTGGAAACGGTTGTGTTCA+CGG | + | chr4_1:35292458-35292477 | None:intergenic | 45.0% | |
| AACTTGACTGGCGTCTTTCT+TGG | - | chr4_1:35292583-35292602 | Msa0545290:intron | 45.0% | |
| ! | GCTAGTGTTTGTGGAAGCAT+TGG | - | chr4_1:35292664-35292683 | Msa0545290:intron | 45.0% |
| !! | AGTGTTTGTGGAAGCATTGG+TGG | - | chr4_1:35292667-35292686 | Msa0545290:intron | 45.0% |
| GTTTCTCATCAGCCCAACAA+CGG | + | chr4_1:35292728-35292747 | None:intergenic | 45.0% | |
| TGTTGGGCTGATGAGAAACA+CGG | - | chr4_1:35292729-35292748 | Msa0545290:intron | 45.0% | |
| AGCTTGGGCCATTTGGTATT+CGG | - | chr4_1:35292758-35292777 | Msa0545290:intron | 45.0% | |
| !! | CTTTAAGCTTGATGGTGGTG+GGG | - | chr4_1:35292831-35292850 | Msa0545290:intron | 45.0% |
| ATAGATGGAGGATTCAGCGT+TGG | - | chr4_1:35292970-35292989 | Msa0545290:intron | 45.0% | |
| ! | GGATTCAGCGTTGGAAACAA+TGG | - | chr4_1:35292979-35292998 | Msa0545290:intron | 45.0% |
| GTGGTAACACACGGAACTTA+TGG | + | chr4_1:35291446-35291465 | None:intergenic | 45.0% | |
| AACAATGGCAACCGTTCCAT+TGG | - | chr4_1:35291632-35291651 | Msa0545290:three_prime_UTR | 45.0% | |
| GGCATTAGAGACCAATGGAA+CGG | + | chr4_1:35291646-35291665 | None:intergenic | 45.0% | |
| ATTTACAAGGCTTGAGGGGA+AGG | - | chr4_1:35292243-35292262 | Msa0545290:CDS | 45.0% | |
| ! | TAGAGTGTCCTTTGTCGTCT+TGG | + | chr4_1:35292360-35292379 | None:intergenic | 45.0% |
| ACAGCGAACATAGGAAGAAG+AGG | + | chr4_1:35292404-35292423 | None:intergenic | 45.0% | |
| CTTGGAAACGGTTGTGTTCA+CGG | + | chr4_1:35292458-35292477 | None:intergenic | 45.0% | |
| AACTTGACTGGCGTCTTTCT+TGG | - | chr4_1:35292583-35292602 | Msa0545290:intron | 45.0% | |
| ! | GCTAGTGTTTGTGGAAGCAT+TGG | - | chr4_1:35292664-35292683 | Msa0545290:intron | 45.0% |
| !! | AGTGTTTGTGGAAGCATTGG+TGG | - | chr4_1:35292667-35292686 | Msa0545290:intron | 45.0% |
| GTTTCTCATCAGCCCAACAA+CGG | + | chr4_1:35292728-35292747 | None:intergenic | 45.0% | |
| TGTTGGGCTGATGAGAAACA+CGG | - | chr4_1:35292729-35292748 | Msa0545290:intron | 45.0% | |
| AGCTTGGGCCATTTGGTATT+CGG | - | chr4_1:35292758-35292777 | Msa0545290:intron | 45.0% | |
| !! | CTTTAAGCTTGATGGTGGTG+GGG | - | chr4_1:35292831-35292850 | Msa0545290:intron | 45.0% |
| ATAGATGGAGGATTCAGCGT+TGG | - | chr4_1:35292970-35292989 | Msa0545290:intron | 45.0% | |
| ! | GGATTCAGCGTTGGAAACAA+TGG | - | chr4_1:35292979-35292998 | Msa0545290:intron | 45.0% |
| CTTGGAGAAGAGTCTTGCAG+TGG | + | chr4_1:35292308-35292327 | None:intergenic | 50.0% | |
| GCAAGACTCTTCTCCAAGCA+AGG | - | chr4_1:35292310-35292329 | Msa0545290:CDS | 50.0% | |
| AACGACTTGAGCTCCTTGCT+TGG | + | chr4_1:35292326-35292345 | None:intergenic | 50.0% | |
| GCTGACATCCAAGACGACAA+AGG | - | chr4_1:35292349-35292368 | Msa0545290:CDS | 50.0% | |
| TGTCACGTCACAGCGAACAT+AGG | + | chr4_1:35292413-35292432 | None:intergenic | 50.0% | |
| TGTTCGCTGTGACGTGACAA+AGG | - | chr4_1:35292414-35292433 | Msa0545290:CDS | 50.0% | |
| AATTATGCTACCCCGTCGAG+CGG | + | chr4_1:35292638-35292657 | None:intergenic | 50.0% | |
| ! | GGCGTGCTTTGAACTTGTGT+AGG | + | chr4_1:35292707-35292726 | None:intergenic | 50.0% |
| AGTTCAAAGCACGCCGTTGT+TGG | - | chr4_1:35292712-35292731 | Msa0545290:intron | 50.0% | |
| GTTCAAAGCACGCCGTTGTT+GGG | - | chr4_1:35292713-35292732 | Msa0545290:intron | 50.0% | |
| GCTTGGGCCATTTGGTATTC+GGG | - | chr4_1:35292759-35292778 | Msa0545290:intron | 50.0% | |
| ! | GCAGCTTCAGCCACATCTTT+TGG | + | chr4_1:35292898-35292917 | None:intergenic | 50.0% |
| GCTGAAGCTGCTCTGTACTT+GGG | - | chr4_1:35292907-35292926 | Msa0545290:intron | 50.0% | |
| CTTGGAGAAGAGTCTTGCAG+TGG | + | chr4_1:35292308-35292327 | None:intergenic | 50.0% | |
| GCAAGACTCTTCTCCAAGCA+AGG | - | chr4_1:35292310-35292329 | Msa0545290:CDS | 50.0% | |
| AACGACTTGAGCTCCTTGCT+TGG | + | chr4_1:35292326-35292345 | None:intergenic | 50.0% | |
| GCTGACATCCAAGACGACAA+AGG | - | chr4_1:35292349-35292368 | Msa0545290:CDS | 50.0% | |
| TGTCACGTCACAGCGAACAT+AGG | + | chr4_1:35292413-35292432 | None:intergenic | 50.0% | |
| TGTTCGCTGTGACGTGACAA+AGG | - | chr4_1:35292414-35292433 | Msa0545290:CDS | 50.0% | |
| AATTATGCTACCCCGTCGAG+CGG | + | chr4_1:35292638-35292657 | None:intergenic | 50.0% | |
| ! | GGCGTGCTTTGAACTTGTGT+AGG | + | chr4_1:35292707-35292726 | None:intergenic | 50.0% |
| AGTTCAAAGCACGCCGTTGT+TGG | - | chr4_1:35292712-35292731 | Msa0545290:intron | 50.0% | |
| GTTCAAAGCACGCCGTTGTT+GGG | - | chr4_1:35292713-35292732 | Msa0545290:intron | 50.0% | |
| GCTTGGGCCATTTGGTATTC+GGG | - | chr4_1:35292759-35292778 | Msa0545290:intron | 50.0% | |
| ! | GCAGCTTCAGCCACATCTTT+TGG | + | chr4_1:35292898-35292917 | None:intergenic | 50.0% |
| GCTGAAGCTGCTCTGTACTT+GGG | - | chr4_1:35292907-35292926 | Msa0545290:intron | 50.0% | |
| TCGTGGACCGTGGTAACACA+CGG | + | chr4_1:35291455-35291474 | None:intergenic | 55.0% | |
| TGTGTTACCACGGTCCACGA+AGG | - | chr4_1:35291455-35291474 | Msa0545290:three_prime_UTR | 55.0% | |
| TACAAGGCTTGAGGGGAAGG+TGG | - | chr4_1:35292246-35292265 | Msa0545290:CDS | 55.0% | |
| ATTATGCTACCCCGTCGAGC+GGG | + | chr4_1:35292637-35292656 | None:intergenic | 55.0% | |
| AGAAACACGGCCATCGAGCT+TGG | - | chr4_1:35292742-35292761 | Msa0545290:intron | 55.0% | |
| GAAACACGGCCATCGAGCTT+GGG | - | chr4_1:35292743-35292762 | Msa0545290:intron | 55.0% | |
| ACCAAATGGCCCAAGCTCGA+TGG | + | chr4_1:35292755-35292774 | None:intergenic | 55.0% | |
| GGCTGAAGCTGCTCTGTACT+TGG | - | chr4_1:35292906-35292925 | Msa0545290:intron | 55.0% | |
| TCGTGGACCGTGGTAACACA+CGG | + | chr4_1:35291455-35291474 | None:intergenic | 55.0% | |
| TGTGTTACCACGGTCCACGA+AGG | - | chr4_1:35291455-35291474 | Msa0545290:three_prime_UTR | 55.0% | |
| TACAAGGCTTGAGGGGAAGG+TGG | - | chr4_1:35292246-35292265 | Msa0545290:CDS | 55.0% | |
| ATTATGCTACCCCGTCGAGC+GGG | + | chr4_1:35292637-35292656 | None:intergenic | 55.0% | |
| AGAAACACGGCCATCGAGCT+TGG | - | chr4_1:35292742-35292761 | Msa0545290:intron | 55.0% | |
| GAAACACGGCCATCGAGCTT+GGG | - | chr4_1:35292743-35292762 | Msa0545290:intron | 55.0% | |
| ACCAAATGGCCCAAGCTCGA+TGG | + | chr4_1:35292755-35292774 | None:intergenic | 55.0% | |
| GGCTGAAGCTGCTCTGTACT+TGG | - | chr4_1:35292906-35292925 | Msa0545290:intron | 55.0% | |
| GTAGTTGCCTTCGTGGACCG+TGG | + | chr4_1:35291465-35291484 | None:intergenic | 60.0% | |
| !! | GGGAAGGTGGCTCTGATCAC+CGG | - | chr4_1:35292259-35292278 | Msa0545290:CDS | 60.0% |
| !! | AAGGTGGCTCTGATCACCGG+TGG | - | chr4_1:35292262-35292281 | Msa0545290:CDS | 60.0% |
| GGGTTATGATCCCCGCTCGA+CGG | - | chr4_1:35292623-35292642 | Msa0545290:intron | 60.0% | |
| GGTTATGATCCCCGCTCGAC+GGG | - | chr4_1:35292624-35292643 | Msa0545290:intron | 60.0% | |
| GTTATGATCCCCGCTCGACG+GGG | - | chr4_1:35292625-35292644 | Msa0545290:intron | 60.0% | |
| TTATGCTACCCCGTCGAGCG+GGG | + | chr4_1:35292636-35292655 | None:intergenic | 60.0% | |
| GCCATCGAGCTTGGGCCATT+TGG | - | chr4_1:35292751-35292770 | Msa0545290:intron | 60.0% | |
| GTAGTTGCCTTCGTGGACCG+TGG | + | chr4_1:35291465-35291484 | None:intergenic | 60.0% | |
| !! | GGGAAGGTGGCTCTGATCAC+CGG | - | chr4_1:35292259-35292278 | Msa0545290:CDS | 60.0% |
| !! | AAGGTGGCTCTGATCACCGG+TGG | - | chr4_1:35292262-35292281 | Msa0545290:CDS | 60.0% |
| GGGTTATGATCCCCGCTCGA+CGG | - | chr4_1:35292623-35292642 | Msa0545290:intron | 60.0% | |
| GGTTATGATCCCCGCTCGAC+GGG | - | chr4_1:35292624-35292643 | Msa0545290:intron | 60.0% | |
| GTTATGATCCCCGCTCGACG+GGG | - | chr4_1:35292625-35292644 | Msa0545290:intron | 60.0% | |
| TTATGCTACCCCGTCGAGCG+GGG | + | chr4_1:35292636-35292655 | None:intergenic | 60.0% | |
| GCCATCGAGCTTGGGCCATT+TGG | - | chr4_1:35292751-35292770 | Msa0545290:intron | 60.0% | |
| CTGATCACCGGTGGTGCGAG+CGG | - | chr4_1:35292271-35292290 | Msa0545290:CDS | 65.0% | |
| CTGATCACCGGTGGTGCGAG+CGG | - | chr4_1:35292271-35292290 | Msa0545290:CDS | 65.0% | |
| ACCGGTGGTGCGAGCGGCAT+CGG | - | chr4_1:35292277-35292296 | Msa0545290:CDS | 70.0% | |
| ACCGATGCCGCTCGCACCAC+CGG | + | chr4_1:35292281-35292300 | None:intergenic | 70.0% | |
| !! | TGGTGCGAGCGGCATCGGTG+AGG | - | chr4_1:35292282-35292301 | Msa0545290:CDS | 70.0% |
| ACCGGTGGTGCGAGCGGCAT+CGG | - | chr4_1:35292277-35292296 | Msa0545290:CDS | 70.0% | |
| ACCGATGCCGCTCGCACCAC+CGG | + | chr4_1:35292281-35292300 | None:intergenic | 70.0% | |
| !! | TGGTGCGAGCGGCATCGGTG+AGG | - | chr4_1:35292282-35292301 | Msa0545290:CDS | 70.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr4_1 | gene | 35291385 | 35293327 | 35291385 | ID=Msa0545290;Name=Msa0545290 |
| chr4_1 | mRNA | 35291385 | 35293327 | 35291385 | ID=Msa0545290-mRNA-1;Parent=Msa0545290;Name=Msa0545290-mRNA-1;_AED=0.25;_eAED=0.25;_QI=251|1|1|1|1|1|2|298|271 |
| chr4_1 | exon | 35291385 | 35292460 | 35291385 | ID=Msa0545290-mRNA-1:exon:8968;Parent=Msa0545290-mRNA-1 |
| chr4_1 | exon | 35293039 | 35293327 | 35293039 | ID=Msa0545290-mRNA-1:exon:8967;Parent=Msa0545290-mRNA-1 |
| chr4_1 | five_prime_UTR | 35293077 | 35293327 | 35293077 | ID=Msa0545290-mRNA-1:five_prime_utr;Parent=Msa0545290-mRNA-1 |
| chr4_1 | CDS | 35293039 | 35293076 | 35293039 | ID=Msa0545290-mRNA-1:cds;Parent=Msa0545290-mRNA-1 |
| chr4_1 | CDS | 35291683 | 35292460 | 35291683 | ID=Msa0545290-mRNA-1:cds;Parent=Msa0545290-mRNA-1 |
| chr4_1 | three_prime_UTR | 35291385 | 35291682 | 35291385 | ID=Msa0545290-mRNA-1:three_prime_utr;Parent=Msa0545290-mRNA-1 |
| Gene Sequence |
| Protein sequence |
