Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770170 | XP_003614560.1 | 98.205 | 390 | 7 | 0 | 1 | 390 | 1 | 390 | 0.0 | 796 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770170 | sp|Q65XS5|BC10_ORYSJ | 34.967 | 306 | 148 | 9 | 123 | 381 | 85 | 386 | 1.81e-44 | 161 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770170 | G7JZH3 | 98.205 | 390 | 7 | 0 | 1 | 390 | 1 | 390 | 0.0 | 796 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0729970 | Msa0770170 | 0.848493 | 5.919452e-60 | -8.615850e-47 |
| Msa0770170 | Msa0812950 | 0.820442 | 6.845455e-53 | -8.615850e-47 |
| Msa0770170 | Msa0849160 | 0.897276 | 1.644781e-76 | -8.615850e-47 |
| Msa0770170 | Msa0947480 | 0.819135 | 1.361651e-52 | -8.615850e-47 |
| Msa0770170 | Msa1023300 | 0.806460 | 8.137333e-50 | -8.615850e-47 |
| Msa0770170 | Msa1150810 | 0.800169 | 1.634917e-48 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770170 | MtrunA17_Chr5g0423131 | 98.205 | 390 | 7 | 0 | 1 | 390 | 1 | 390 | 0.0 | 796 |
| Msa0770170 | MtrunA17_Chr1g0209531 | 68.542 | 391 | 120 | 2 | 1 | 390 | 5 | 393 | 0.0 | 559 |
| Msa0770170 | MtrunA17_Chr6g0484141 | 54.436 | 417 | 163 | 5 | 1 | 390 | 3 | 419 | 7.69e-163 | 463 |
| Msa0770170 | MtrunA17_Chr5g0394961 | 50.591 | 423 | 174 | 5 | 1 | 390 | 1 | 421 | 8.10e-151 | 432 |
| Msa0770170 | MtrunA17_Chr3g0136091 | 48.655 | 409 | 173 | 7 | 1 | 390 | 3 | 393 | 1.44e-135 | 393 |
| Msa0770170 | MtrunA17_Chr1g0151841 | 50.000 | 346 | 164 | 4 | 39 | 381 | 28 | 367 | 2.01e-126 | 369 |
| Msa0770170 | MtrunA17_Chr2g0276861 | 52.922 | 308 | 143 | 1 | 85 | 390 | 131 | 438 | 8.61e-123 | 362 |
| Msa0770170 | MtrunA17_Chr8g0341461 | 52.787 | 305 | 142 | 2 | 88 | 390 | 109 | 413 | 5.44e-118 | 348 |
| Msa0770170 | MtrunA17_Chr5g0394981 | 64.789 | 213 | 74 | 1 | 179 | 390 | 2 | 214 | 1.36e-102 | 302 |
| Msa0770170 | MtrunA17_Chr4g0073871 | 64.319 | 213 | 75 | 1 | 179 | 390 | 9 | 221 | 1.77e-100 | 297 |
| Msa0770170 | MtrunA17_Chr3g0138871 | 41.390 | 331 | 156 | 8 | 81 | 381 | 49 | 371 | 7.85e-73 | 232 |
| Msa0770170 | MtrunA17_Chr1g0148241 | 39.748 | 317 | 164 | 5 | 91 | 383 | 79 | 392 | 7.17e-70 | 225 |
| Msa0770170 | MtrunA17_Chr4g0071911 | 39.039 | 333 | 165 | 7 | 81 | 383 | 63 | 387 | 4.49e-69 | 223 |
| Msa0770170 | MtrunA17_Chr2g0298501 | 41.754 | 285 | 140 | 5 | 122 | 383 | 105 | 386 | 2.51e-64 | 210 |
| Msa0770170 | MtrunA17_Chr2g0298511 | 39.100 | 289 | 141 | 5 | 122 | 383 | 97 | 377 | 2.53e-64 | 210 |
| Msa0770170 | MtrunA17_Chr2g0289021 | 37.224 | 317 | 154 | 9 | 107 | 381 | 46 | 359 | 6.74e-54 | 182 |
| Msa0770170 | MtrunA17_Chr8g0384601 | 36.842 | 304 | 144 | 9 | 122 | 381 | 55 | 354 | 1.40e-53 | 181 |
| Msa0770170 | MtrunA17_Chr1g0170231 | 37.586 | 290 | 148 | 9 | 122 | 388 | 63 | 342 | 1.52e-45 | 160 |
| Msa0770170 | MtrunA17_Chr3g0137661 | 35.276 | 326 | 191 | 9 | 77 | 388 | 55 | 374 | 8.59e-45 | 159 |
| Msa0770170 | MtrunA17_Chr4g0073881 | 38.278 | 209 | 98 | 6 | 1 | 179 | 1 | 208 | 1.36e-39 | 140 |
| Msa0770170 | MtrunA17_Chr1g0170151 | 39.236 | 288 | 144 | 10 | 122 | 388 | 64 | 341 | 3.31e-39 | 143 |
| Msa0770170 | MtrunA17_Chr2g0322161 | 35.117 | 299 | 150 | 11 | 123 | 388 | 78 | 365 | 5.52e-38 | 140 |
| Msa0770170 | MtrunA17_Chr5g0394971 | 61.628 | 86 | 32 | 1 | 95 | 179 | 1 | 86 | 4.83e-32 | 116 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0770170 | AT1G68390.1 | 64.630 | 311 | 106 | 3 | 84 | 390 | 98 | 408 | 3.97e-154 | 441 |
| Msa0770170 | AT5G11730.1 | 54.167 | 312 | 141 | 2 | 79 | 388 | 73 | 384 | 2.23e-127 | 372 |
| Msa0770170 | AT1G10280.1 | 47.222 | 396 | 180 | 7 | 21 | 388 | 16 | 410 | 3.80e-127 | 372 |
| Msa0770170 | AT1G51770.1 | 52.647 | 340 | 158 | 3 | 53 | 390 | 54 | 392 | 2.24e-126 | 370 |
| Msa0770170 | AT1G73810.1 | 49.265 | 408 | 181 | 7 | 2 | 388 | 14 | 416 | 2.83e-125 | 368 |
| Msa0770170 | AT1G68380.1 | 50.949 | 369 | 167 | 7 | 29 | 390 | 31 | 392 | 1.20e-124 | 365 |
| Msa0770170 | AT5G25970.1 | 51.572 | 318 | 149 | 3 | 76 | 388 | 68 | 385 | 1.76e-120 | 354 |
| Msa0770170 | AT5G25970.2 | 51.572 | 318 | 149 | 3 | 76 | 388 | 68 | 385 | 1.76e-120 | 354 |
| Msa0770170 | AT5G25970.3 | 51.572 | 318 | 149 | 3 | 76 | 388 | 68 | 385 | 1.76e-120 | 354 |
| Msa0770170 | AT3G21310.1 | 48.225 | 338 | 168 | 3 | 53 | 388 | 49 | 381 | 3.33e-118 | 348 |
| Msa0770170 | AT3G21310.3 | 48.225 | 338 | 168 | 3 | 53 | 388 | 49 | 381 | 3.33e-118 | 348 |
| Msa0770170 | AT1G10880.1 | 53.103 | 290 | 134 | 2 | 97 | 385 | 93 | 381 | 8.74e-115 | 340 |
| Msa0770170 | AT1G51770.2 | 47.941 | 340 | 147 | 4 | 53 | 390 | 54 | 365 | 2.78e-109 | 326 |
| Msa0770170 | AT5G16170.1 | 43.236 | 377 | 189 | 4 | 31 | 388 | 37 | 407 | 7.23e-109 | 326 |
| Msa0770170 | AT4G31350.4 | 41.379 | 290 | 147 | 4 | 122 | 390 | 88 | 375 | 4.94e-68 | 219 |
| Msa0770170 | AT4G31350.1 | 41.379 | 290 | 147 | 4 | 122 | 390 | 88 | 375 | 4.94e-68 | 219 |
| Msa0770170 | AT4G31350.2 | 41.379 | 290 | 147 | 4 | 122 | 390 | 88 | 375 | 4.94e-68 | 219 |
| Msa0770170 | AT4G30060.2 | 39.024 | 328 | 161 | 7 | 83 | 381 | 70 | 387 | 1.77e-67 | 219 |
| Msa0770170 | AT4G30060.1 | 39.024 | 328 | 161 | 7 | 83 | 381 | 70 | 387 | 1.77e-67 | 219 |
| Msa0770170 | AT4G25870.1 | 39.222 | 334 | 173 | 7 | 77 | 385 | 54 | 382 | 5.31e-67 | 218 |
| Msa0770170 | AT2G19160.2 | 37.764 | 331 | 169 | 7 | 83 | 385 | 67 | 388 | 5.82e-67 | 218 |
| Msa0770170 | AT2G19160.1 | 37.764 | 331 | 169 | 7 | 83 | 385 | 67 | 388 | 5.82e-67 | 218 |
| Msa0770170 | AT3G21310.2 | 48.558 | 208 | 101 | 2 | 52 | 258 | 48 | 250 | 4.72e-63 | 203 |
| Msa0770170 | AT4G31350.3 | 40.345 | 290 | 145 | 5 | 122 | 390 | 88 | 370 | 5.33e-63 | 206 |
| Msa0770170 | AT5G57270.3 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 8.18e-63 | 206 |
| Msa0770170 | AT5G57270.1 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 8.18e-63 | 206 |
| Msa0770170 | AT5G57270.4 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 8.18e-63 | 206 |
| Msa0770170 | AT5G57270.5 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 8.18e-63 | 206 |
| Msa0770170 | AT5G57270.2 | 38.924 | 316 | 165 | 5 | 95 | 385 | 69 | 381 | 8.18e-63 | 206 |
| Msa0770170 | AT5G14550.1 | 36.688 | 308 | 147 | 8 | 119 | 382 | 61 | 364 | 9.14e-55 | 185 |
| Msa0770170 | AT5G14550.3 | 36.688 | 308 | 147 | 8 | 119 | 382 | 61 | 364 | 1.20e-54 | 185 |
| Msa0770170 | AT5G14550.2 | 38.225 | 293 | 141 | 9 | 119 | 380 | 61 | 344 | 3.81e-54 | 182 |
| Msa0770170 | AT1G62305.1 | 36.570 | 309 | 148 | 10 | 115 | 381 | 62 | 364 | 5.37e-52 | 178 |
| Msa0770170 | AT1G11940.1 | 36.392 | 316 | 153 | 11 | 108 | 381 | 61 | 370 | 6.73e-52 | 178 |
| Msa0770170 | AT5G25330.1 | 34.840 | 376 | 208 | 14 | 29 | 388 | 5 | 359 | 2.55e-49 | 171 |
| Msa0770170 | AT5G14550.4 | 38.408 | 289 | 141 | 10 | 119 | 382 | 61 | 337 | 3.04e-48 | 167 |
| Msa0770170 | AT3G52060.1 | 36.101 | 277 | 160 | 8 | 122 | 388 | 74 | 343 | 3.48e-48 | 167 |
| Msa0770170 | AT1G62305.3 | 42.922 | 219 | 98 | 6 | 115 | 311 | 62 | 275 | 5.06e-47 | 163 |
| Msa0770170 | AT1G11940.2 | 45.833 | 192 | 95 | 6 | 108 | 295 | 61 | 247 | 3.85e-45 | 157 |
| Msa0770170 | AT1G62305.2 | 33.333 | 309 | 134 | 10 | 115 | 381 | 62 | 340 | 9.19e-39 | 142 |
| Msa0770170 | AT5G22070.1 | 35.000 | 300 | 150 | 12 | 123 | 388 | 71 | 359 | 1.03e-37 | 140 |
| Msa0770170 | AT4G32290.1 | 35.764 | 288 | 159 | 7 | 123 | 388 | 93 | 376 | 6.24e-35 | 132 |
Find 86 sgRNAs with CRISPR-Local
Find 196 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTGTGCCTTTGGCTCCTCTA+TGG | 0.245942 | 5_2:-40310068 | Msa0770170:CDS |
| AGAGGGACCTAATGGTAATT+TGG | 0.251097 | 5_2:+40307529 | None:intergenic |
| ATTTAATTAATAAATAATAA+AGG | 0.331278 | 5_2:-40307575 | Msa0770170:three_prime_UTR |
| GGTTAGAGGTCCTGTGCCTT+TGG | 0.333074 | 5_2:-40310079 | Msa0770170:CDS |
| AAAGGATATTCATCTATCTT+AGG | 0.344852 | 5_2:+40310135 | None:intergenic |
| AATCAAACATGTAAGTATAA+TGG | 0.347050 | 5_2:-40307940 | Msa0770170:CDS |
| CTTTAGTTAGCATTAAGTTT+TGG | 0.349642 | 5_2:-40308074 | Msa0770170:CDS |
| CATAAAGTCCACTTACTTGA+TGG | 0.365680 | 5_2:-40307696 | Msa0770170:three_prime_UTR |
| AAATTCTTCAAAGGGCATAA+AGG | 0.387212 | 5_2:-40310042 | Msa0770170:CDS |
| GTTTATAAGTGCATGACCTT+TGG | 0.392410 | 5_2:+40307841 | None:intergenic |
| TCTGGTCTCACATATTTAAC+TGG | 0.392835 | 5_2:+40307994 | None:intergenic |
| ATTGTCTGAGTTTGATTGTA+GGG | 0.396055 | 5_2:+40308229 | None:intergenic |
| AGGCTGGAATCAAATACTAT+TGG | 0.404126 | 5_2:+40310255 | None:intergenic |
| ATGTTTGTTATTTGTTTGCT+AGG | 0.408942 | 5_2:-40307906 | Msa0770170:CDS |
| ATAATTTATATAGTTGCAAC+TGG | 0.409857 | 5_2:+40307794 | None:intergenic |
| AATAAATAATAAAGGAAAGT+TGG | 0.417002 | 5_2:-40307567 | Msa0770170:three_prime_UTR |
| CATTGTCTGAGTTTGATTGT+AGG | 0.421342 | 5_2:+40308228 | None:intergenic |
| AAACTCAGACAATGGAGAAA+AGG | 0.424464 | 5_2:-40308219 | Msa0770170:CDS |
| AACTTAATGCTAACTAAAGT+TGG | 0.429113 | 5_2:+40308078 | None:intergenic |
| CAAGAAGCGCGTTTGCTAGC+AGG | 0.432228 | 5_2:+40308412 | None:intergenic |
| AATTCTTCAAAGGGCATAAA+GGG | 0.434327 | 5_2:-40310041 | Msa0770170:CDS |
| GAAGTTTGACTTGGGTTGAC+TGG | 0.435516 | 5_2:-40308035 | Msa0770170:CDS |
| TGTGCCTTTGGCTCCTCTAT+GGG | 0.436405 | 5_2:-40310067 | Msa0770170:CDS |
| TATAATGCAGAAAGTAGAAT+GGG | 0.436466 | 5_2:-40308466 | Msa0770170:intron |
| GTTTGCTAGCAGGCGACGCT+CGG | 0.437681 | 5_2:+40308422 | None:intergenic |
| AGGGTCTCAGTGGTTTGAAA+TGG | 0.444264 | 5_2:-40308199 | Msa0770170:CDS |
| TGAAAACCGGGTAATATGTT+CGG | 0.445181 | 5_2:+40308145 | None:intergenic |
| AAGTAAACCAAATTACCATT+AGG | 0.450618 | 5_2:-40307536 | Msa0770170:three_prime_UTR |
| AACTCAGACAATGGAGAAAA+GGG | 0.452092 | 5_2:-40308218 | Msa0770170:CDS |
| CGCGTCCAACTGAACTTGCC+TGG | 0.457072 | 5_2:+40308274 | None:intergenic |
| GTGTGATACCACATGCTAGA+AGG | 0.467681 | 5_2:+40310373 | None:intergenic |
| GCTCATGAGGTTTGCTCCAA+AGG | 0.468695 | 5_2:-40307857 | Msa0770170:CDS |
| ACTTGGGTTGACTGGTCAAA+GGG | 0.471540 | 5_2:-40308027 | Msa0770170:CDS |
| GTATTTGATTCCAGCCTCAA+TGG | 0.471892 | 5_2:-40310249 | Msa0770170:CDS |
| TGAGTGATGAAGAATTGTTA+TGG | 0.473976 | 5_2:-40310173 | Msa0770170:CDS |
| CTGATATGAGAACAAATCGT+TGG | 0.474721 | 5_2:+40308379 | None:intergenic |
| CATCAAGTCCATCAAGTAAG+TGG | 0.484902 | 5_2:+40307688 | None:intergenic |
| GTGGAGAGTCCTGTGTTTCA+TGG | 0.489177 | 5_2:-40309970 | Msa0770170:CDS |
| TTGAAGAATTTCTCCCATAG+AGG | 0.489698 | 5_2:+40310054 | None:intergenic |
| GACTTGGGTTGACTGGTCAA+AGG | 0.498955 | 5_2:-40308028 | Msa0770170:CDS |
| ACTTCAGAACCATTGTAAGA+TGG | 0.502479 | 5_2:+40309991 | None:intergenic |
| TCATATACTTGTAATTTCAA+AGG | 0.504221 | 5_2:-40307613 | Msa0770170:three_prime_UTR |
| AGTGTGGAAGAGGGACCTAA+TGG | 0.504473 | 5_2:+40307521 | None:intergenic |
| CTAGCATGTGGTATCACACT+TGG | 0.505414 | 5_2:-40310369 | Msa0770170:CDS |
| CTATGTCATGGCTTACGACC+AGG | 0.510022 | 5_2:-40308292 | Msa0770170:CDS |
| AGCCTCAATGGTAGTCATGA+AGG | 0.515851 | 5_2:-40310237 | Msa0770170:CDS |
| ACCATATAAAAGTGTGGAAG+AGG | 0.516049 | 5_2:+40307511 | None:intergenic |
| TACAAATAGAAGTTTGACTT+GGG | 0.522087 | 5_2:-40308043 | Msa0770170:CDS |
| AATACTATTGGTTGGCGTAA+CGG | 0.522626 | 5_2:+40310267 | None:intergenic |
| ATATAATGCAGAAAGTAGAA+TGG | 0.524034 | 5_2:-40308467 | Msa0770170:intron |
| TATGGGAGAAATTCTTCAAA+GGG | 0.525258 | 5_2:-40310050 | Msa0770170:CDS |
| TACGACCAGGCAAGTTCAGT+TGG | 0.529529 | 5_2:-40308279 | Msa0770170:CDS |
| CTCACATATTTAACTGGATG+TGG | 0.530102 | 5_2:+40308000 | None:intergenic |
| TACCTTCTCCTTCTAGCATG+TGG | 0.532227 | 5_2:-40310381 | Msa0770170:CDS |
| TTCATGACTACCATTGAGGC+TGG | 0.539090 | 5_2:+40310239 | None:intergenic |
| ATGAGCCTTGACAATGAAGT+AGG | 0.542080 | 5_2:+40307874 | None:intergenic |
| TGGTAGGAGAATTCCCAGTA+AGG | 0.545755 | 5_2:-40309950 | Msa0770170:intron |
| CATAGAGGAGCCAAAGGCAC+AGG | 0.549020 | 5_2:+40310069 | None:intergenic |
| TCTTGCCTACTTCATTGTCA+AGG | 0.554046 | 5_2:-40307879 | Msa0770170:CDS |
| ATACAAATAGAAGTTTGACT+TGG | 0.556289 | 5_2:-40308044 | Msa0770170:CDS |
| CTATGGGAGAAATTCTTCAA+AGG | 0.556837 | 5_2:-40310051 | Msa0770170:CDS |
| TCCTTTCGATCGAGTTCCGA+AGG | 0.557813 | 5_2:-40310118 | Msa0770170:CDS |
| CTACAATCAAACTCAGACAA+TGG | 0.558283 | 5_2:-40308227 | Msa0770170:CDS |
| ATCCTTCATGACTACCATTG+AGG | 0.559449 | 5_2:+40310235 | None:intergenic |
| ATCTTACAATGGTTCTGAAG+TGG | 0.559601 | 5_2:-40309989 | Msa0770170:CDS |
| TGGAATCAAATACTATTGGT+TGG | 0.565853 | 5_2:+40310259 | None:intergenic |
| CTTCATTGTCAAGGCTCATG+AGG | 0.577302 | 5_2:-40307870 | Msa0770170:CDS |
| TTCTCCCATAGAGGAGCCAA+AGG | 0.581065 | 5_2:+40310063 | None:intergenic |
| TTGTCTGAGTTTGATTGTAG+GGG | 0.583557 | 5_2:+40308230 | None:intergenic |
| AAATCATGTACAACTTGAGA+TGG | 0.588695 | 5_2:+40310195 | None:intergenic |
| ACCTTCGGAACTCGATCGAA+AGG | 0.595763 | 5_2:+40310117 | None:intergenic |
| AGAGTCCTGTGTTTCATGGT+AGG | 0.601294 | 5_2:-40309966 | Msa0770170:CDS |
| CAAGTTCAGTTGGACGCGGA+CGG | 0.618278 | 5_2:-40308269 | Msa0770170:CDS |
| CTAGAAGGAGAAGGTAAGTG+AGG | 0.623171 | 5_2:+40310388 | None:intergenic |
| ATCAGACCGAACATATTACC+CGG | 0.623786 | 5_2:-40308151 | Msa0770170:CDS |
| TTTCGATCGAGTTCCGAAGG+TGG | 0.623922 | 5_2:-40310115 | Msa0770170:CDS |
| CCATATAAAAGTGTGGAAGA+GGG | 0.631279 | 5_2:+40307512 | None:intergenic |
| CACTCGAATCCATCTTACAA+TGG | 0.632327 | 5_2:-40310000 | Msa0770170:CDS |
| ACTGTTGAGAAGTTGAATAG+TGG | 0.634685 | 5_2:+40308345 | None:intergenic |
| CAGGCAAGTTCAGTTGGACG+CGG | 0.637111 | 5_2:-40308273 | Msa0770170:CDS |
| TGGGTTGACTGGTCAAAGGG+TGG | 0.638199 | 5_2:-40308024 | Msa0770170:CDS |
| TACCACATGCTAGAAGGAGA+AGG | 0.656558 | 5_2:+40310379 | None:intergenic |
| ATTCTCCTACCATGAAACAC+AGG | 0.661769 | 5_2:+40309961 | None:intergenic |
| ATAATGCAGAAAGTAGAATG+GGG | 0.668247 | 5_2:-40308465 | Msa0770170:intron |
| AATGGAGAAAAGGGTCTCAG+TGG | 0.678248 | 5_2:-40308209 | Msa0770170:CDS |
| AGTTAAATATGTGAGACCAG+AGG | 0.713851 | 5_2:-40307992 | Msa0770170:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !! | ATTTAATTAATAAATAATAA+AGG | - | chr5_2:40310409-40310428 | Msa0770170:CDS | 0.0% |
| !! | TTAAATAATTGAAAGAATAA+AGG | - | chr5_2:40308904-40308923 | Msa0770170:intron | 10.0% |
| !!! | GAATTTTTTTTATCTTGATA+TGG | - | chr5_2:40308062-40308081 | Msa0770170:CDS | 15.0% |
| !!! | AAGTTTTTTATCTTTTCTTT+TGG | + | chr5_2:40308565-40308584 | None:intergenic | 15.0% |
| !!! | AAAGATAAAAAACTTTTTTG+AGG | - | chr5_2:40308570-40308589 | Msa0770170:intron | 15.0% |
| !!! | AAGATAAAAAACTTTTTTGA+GGG | - | chr5_2:40308571-40308590 | Msa0770170:intron | 15.0% |
| !!! | TTTAATTTTTTTACACATTG+TGG | + | chr5_2:40309258-40309277 | None:intergenic | 15.0% |
| !!! | TGTTTCAAATCTTAATTTTT+AGG | - | chr5_2:40309426-40309445 | Msa0770170:intron | 15.0% |
| !!! | TAATTCATTCTTTTTTATGT+AGG | - | chr5_2:40310214-40310233 | Msa0770170:CDS | 15.0% |
| !!! | TTTTTTTTGTTGAAAGAAAT+AGG | - | chr5_2:40310346-40310365 | Msa0770170:CDS | 15.0% |
| !! | AATAAATAATAAAGGAAAGT+TGG | - | chr5_2:40310417-40310436 | Msa0770170:CDS | 15.0% |
| !! | TTATGAATGAAAATTGTCAT+TGG | - | chr5_2:40308090-40308109 | Msa0770170:CDS | 20.0% |
| !! | ATCAAAGAACAAATAAAGTA+AGG | - | chr5_2:40308144-40308163 | Msa0770170:CDS | 20.0% |
| !! | TCAAAGAACAAATAAAGTAA+GGG | - | chr5_2:40308145-40308164 | Msa0770170:CDS | 20.0% |
| !!! | AATTGTTTGATTTGAAAACA+TGG | + | chr5_2:40308205-40308224 | None:intergenic | 20.0% |
| !! | TAAATTGAATTAAGAGGAAA+AGG | - | chr5_2:40308333-40308352 | Msa0770170:CDS | 20.0% |
| !! | AAATTGAATTAAGAGGAAAA+GGG | - | chr5_2:40308334-40308353 | Msa0770170:CDS | 20.0% |
| !! | AAAAAATATTGAATGTAACC+AGG | - | chr5_2:40308417-40308436 | Msa0770170:CDS | 20.0% |
| !!! | AGATAAAAAACTTTTTTGAG+GGG | - | chr5_2:40308572-40308591 | Msa0770170:intron | 20.0% |
| !!! | AAACCATGTATAAATCTTTT+AGG | + | chr5_2:40308954-40308973 | None:intergenic | 20.0% |
| !! | AACACTAAAGTTTCATTAAA+AGG | + | chr5_2:40309190-40309209 | None:intergenic | 20.0% |
| !! | GAGAAAATTAATTTCCTTTA+TGG | - | chr5_2:40309390-40309409 | Msa0770170:intron | 20.0% |
| !! | AAGTATACAATAAACCATAA+AGG | + | chr5_2:40309407-40309426 | None:intergenic | 20.0% |
| !! | AATCAAACATGTAAGTATAA+TGG | - | chr5_2:40310044-40310063 | Msa0770170:CDS | 20.0% |
| !! | ATAATTTATATAGTTGCAAC+TGG | + | chr5_2:40310193-40310212 | None:intergenic | 20.0% |
| !!! | ACTTGATGAGTTTTTTTAAT+AGG | - | chr5_2:40310311-40310330 | Msa0770170:CDS | 20.0% |
| !! | TCATATACTTGTAATTTCAA+AGG | - | chr5_2:40310371-40310390 | Msa0770170:CDS | 20.0% |
| ! | AAAGGATATTCATCTATCTT+AGG | + | chr5_2:40307852-40307871 | None:intergenic | 25.0% |
| ! | AAAAATTCACTAACCTTACT+GGG | + | chr5_2:40308050-40308069 | None:intergenic | 25.0% |
| ! | AAAAAATTCACTAACCTTAC+TGG | + | chr5_2:40308051-40308070 | None:intergenic | 25.0% |
| ! | TCAAATCAAACAATTCTATG+TGG | - | chr5_2:40308210-40308229 | Msa0770170:CDS | 25.0% |
| !!! | GTATACACACGTTTTAAATA+TGG | - | chr5_2:40308257-40308276 | Msa0770170:CDS | 25.0% |
| ! | CCTCTTAATTCAATTTACTT+AGG | + | chr5_2:40308330-40308349 | None:intergenic | 25.0% |
| ! | CCTAAGTAAATTGAATTAAG+AGG | - | chr5_2:40308327-40308346 | Msa0770170:CDS | 25.0% |
| ! | AATTGAATTAAGAGGAAAAG+GGG | - | chr5_2:40308335-40308354 | Msa0770170:CDS | 25.0% |
| !! | TTTTATCTTTTCTTTTGGCA+AGG | + | chr5_2:40308560-40308579 | None:intergenic | 25.0% |
| !!! | GATAAAAAACTTTTTTGAGG+GGG | - | chr5_2:40308573-40308592 | Msa0770170:intron | 25.0% |
| ! | TGTTTGTATATAGCATTTCA+TGG | - | chr5_2:40308748-40308767 | Msa0770170:intron | 25.0% |
| !!! | TGCTAATAGTATTTTGACTA+TGG | + | chr5_2:40308839-40308858 | None:intergenic | 25.0% |
| ! | ATAGATTATAGTCTTCAACT+AGG | - | chr5_2:40309021-40309040 | Msa0770170:intron | 25.0% |
| !! | CATTGCATTGATAACTAATT+AGG | + | chr5_2:40309147-40309166 | None:intergenic | 25.0% |
| ! | ACTAAAGTTTCATTAAAAGG+TGG | + | chr5_2:40309187-40309206 | None:intergenic | 25.0% |
| ! | ATTGGAAGCTTAATTCAAAA+TGG | + | chr5_2:40309305-40309324 | None:intergenic | 25.0% |
| !! | TTTTCTCATGATCACTAATT+GGG | + | chr5_2:40309377-40309396 | None:intergenic | 25.0% |
| !! | ATTTTCTCATGATCACTAAT+TGG | + | chr5_2:40309378-40309397 | None:intergenic | 25.0% |
| !!! | TACATTTTGAAACAAACTGA+TGG | + | chr5_2:40309479-40309498 | None:intergenic | 25.0% |
| ! | ATATAATGCAGAAAGTAGAA+TGG | - | chr5_2:40309517-40309536 | Msa0770170:intron | 25.0% |
| ! | TATAATGCAGAAAGTAGAAT+GGG | - | chr5_2:40309518-40309537 | Msa0770170:intron | 25.0% |
| !!! | TTGCAATATTTTCTGAAAAC+CGG | + | chr5_2:40309855-40309874 | None:intergenic | 25.0% |
| !! | GTTTTCAGAAAATATTGCAA+TGG | - | chr5_2:40309855-40309874 | Msa0770170:intron | 25.0% |
| ! | AACTTAATGCTAACTAAAGT+TGG | + | chr5_2:40309909-40309928 | None:intergenic | 25.0% |
| !! | CTTTAGTTAGCATTAAGTTT+TGG | - | chr5_2:40309910-40309929 | Msa0770170:intron | 25.0% |
| ! | ATACAAATAGAAGTTTGACT+TGG | - | chr5_2:40309940-40309959 | Msa0770170:intron | 25.0% |
| !! | TACAAATAGAAGTTTGACTT+GGG | - | chr5_2:40309941-40309960 | Msa0770170:intron | 25.0% |
| !!! | ATGTTTGTTATTTGTTTGCT+AGG | - | chr5_2:40310078-40310097 | Msa0770170:CDS | 25.0% |
| ! | AAGTAAACCAAATTACCATT+AGG | - | chr5_2:40310448-40310467 | Msa0770170:CDS | 25.0% |
| TGGAATCAAATACTATTGGT+TGG | + | chr5_2:40307728-40307747 | None:intergenic | 30.0% | |
| AAATCATGTACAACTTGAGA+TGG | + | chr5_2:40307792-40307811 | None:intergenic | 30.0% | |
| TGAGTGATGAAGAATTGTTA+TGG | - | chr5_2:40307811-40307830 | Msa0770170:three_prime_UTR | 30.0% | |
| TATGGGAGAAATTCTTCAAA+GGG | - | chr5_2:40307934-40307953 | Msa0770170:CDS | 30.0% | |
| ! | AAATTCTTCAAAGGGCATAA+AGG | - | chr5_2:40307942-40307961 | Msa0770170:CDS | 30.0% |
| ! | AATTCTTCAAAGGGCATAAA+GGG | - | chr5_2:40307943-40307962 | Msa0770170:CDS | 30.0% |
| ATTGAATTAAGAGGAAAAGG+GGG | - | chr5_2:40308336-40308355 | Msa0770170:CDS | 30.0% | |
| !! | CTTCATATTGAAAGTGTTTC+CGG | + | chr5_2:40308453-40308472 | None:intergenic | 30.0% |
| ACACTTTCAATATGAAGTGT+CGG | - | chr5_2:40308456-40308475 | Msa0770170:CDS | 30.0% | |
| !!! | GTATTTTGACTATGGAATAC+TGG | + | chr5_2:40308831-40308850 | None:intergenic | 30.0% |
| GTGCCTAAAAGATTTATACA+TGG | - | chr5_2:40308948-40308967 | Msa0770170:intron | 30.0% | |
| GTTGAAGACTATAATCTATG+AGG | + | chr5_2:40309020-40309039 | None:intergenic | 30.0% | |
| ATTATAGTCTTCAACTAGGT+AGG | - | chr5_2:40309025-40309044 | Msa0770170:intron | 30.0% | |
| TTAATACTGTGCCTTAACTT+TGG | + | chr5_2:40309060-40309079 | None:intergenic | 30.0% | |
| AAGTTTCATTAAAAGGTGGT+AGG | + | chr5_2:40309183-40309202 | None:intergenic | 30.0% | |
| ATGAAACTTTAGTGTTGTGT+AGG | - | chr5_2:40309194-40309213 | Msa0770170:intron | 30.0% | |
| TGAAACTTTAGTGTTGTGTA+GGG | - | chr5_2:40309195-40309214 | Msa0770170:intron | 30.0% | |
| ACTCTTTAGACTCTACATAT+TGG | + | chr5_2:40309226-40309245 | None:intergenic | 30.0% | |
| TCTGCATTATATCAGATGAA+GGG | + | chr5_2:40309509-40309528 | None:intergenic | 30.0% | |
| TTCTGCATTATATCAGATGA+AGG | + | chr5_2:40309510-40309529 | None:intergenic | 30.0% | |
| ATAATGCAGAAAGTAGAATG+GGG | - | chr5_2:40309519-40309538 | Msa0770170:intron | 30.0% | |
| ATTGTCTGAGTTTGATTGTA+GGG | + | chr5_2:40309758-40309777 | None:intergenic | 30.0% | |
| !! | TGCAATATTTTCTGAAAACC+GGG | + | chr5_2:40309854-40309873 | None:intergenic | 30.0% |
| AAAAATTCACAAGTAACCTC+TGG | + | chr5_2:40310011-40310030 | None:intergenic | 30.0% | |
| ! | AGAGGTTACTTGTGAATTTT+TGG | - | chr5_2:40310010-40310029 | Msa0770170:CDS | 30.0% |
| !! | GTGAATTTTTGGAGAATTTG+AGG | - | chr5_2:40310021-40310040 | Msa0770170:CDS | 30.0% |
| ! | AATACTATTGGTTGGCGTAA+CGG | + | chr5_2:40307720-40307739 | None:intergenic | 35.0% |
| AGGCTGGAATCAAATACTAT+TGG | + | chr5_2:40307732-40307751 | None:intergenic | 35.0% | |
| TTGAAGAATTTCTCCCATAG+AGG | + | chr5_2:40307933-40307952 | None:intergenic | 35.0% | |
| CTATGGGAGAAATTCTTCAA+AGG | - | chr5_2:40307933-40307952 | Msa0770170:CDS | 35.0% | |
| ACTTCAGAACCATTGTAAGA+TGG | + | chr5_2:40307996-40308015 | None:intergenic | 35.0% | |
| !! | ATCTTACAATGGTTCTGAAG+TGG | - | chr5_2:40307995-40308014 | Msa0770170:CDS | 35.0% |
| AATTAAATGAAGCAGAGCAG+AGG | - | chr5_2:40308361-40308380 | Msa0770170:CDS | 35.0% | |
| ATTAAATGAAGCAGAGCAGA+GGG | - | chr5_2:40308362-40308381 | Msa0770170:CDS | 35.0% | |
| !! | GTGACATGTACGTTTTAAGT+TGG | - | chr5_2:40308480-40308499 | Msa0770170:intron | 35.0% |
| TAAGGTAGTTATGGTCTCAA+TGG | + | chr5_2:40308513-40308532 | None:intergenic | 35.0% | |
| GGCAAGGATTAAAAAAACCT+TGG | + | chr5_2:40308544-40308563 | None:intergenic | 35.0% | |
| TCGCTCATGTGTTATAGTAT+TGG | - | chr5_2:40308636-40308655 | Msa0770170:intron | 35.0% | |
| AACTATCCTCTTCCATACTA+CGG | + | chr5_2:40308695-40308714 | None:intergenic | 35.0% | |
| ! | ACTAACATGTGTCCTCTTTT+TGG | + | chr5_2:40308779-40308798 | None:intergenic | 35.0% |
| TGGCAAATGGCAATTTATCT+GGG | + | chr5_2:40308997-40309016 | None:intergenic | 35.0% | |
| ATAATCTATGAGGTGGCAAA+TGG | + | chr5_2:40309010-40309029 | None:intergenic | 35.0% | |
| GAAGACTATAATCTATGAGG+TGG | + | chr5_2:40309017-40309036 | None:intergenic | 35.0% | |
| TTAAGGCACAGTATTAACTG+AGG | - | chr5_2:40309063-40309082 | Msa0770170:intron | 35.0% | |
| ATATGTAGCTGTTGGAAGTT+TGG | - | chr5_2:40309086-40309105 | Msa0770170:intron | 35.0% | |
| AAAGGTGGTAGGAATTTAGA+TGG | + | chr5_2:40309172-40309191 | None:intergenic | 35.0% | |
| CTGATATGAGAACAAATCGT+TGG | + | chr5_2:40309608-40309627 | None:intergenic | 35.0% | |
| ACTGTTGAGAAGTTGAATAG+TGG | + | chr5_2:40309642-40309661 | None:intergenic | 35.0% | |
| CTCAACAAAAAGCTATGTCA+TGG | - | chr5_2:40309680-40309699 | Msa0770170:intron | 35.0% | |
| TTGTCTGAGTTTGATTGTAG+GGG | + | chr5_2:40309757-40309776 | None:intergenic | 35.0% | |
| CATTGTCTGAGTTTGATTGT+AGG | + | chr5_2:40309759-40309778 | None:intergenic | 35.0% | |
| CTACAATCAAACTCAGACAA+TGG | - | chr5_2:40309757-40309776 | Msa0770170:intron | 35.0% | |
| AAACTCAGACAATGGAGAAA+AGG | - | chr5_2:40309765-40309784 | Msa0770170:intron | 35.0% | |
| AACTCAGACAATGGAGAAAA+GGG | - | chr5_2:40309766-40309785 | Msa0770170:intron | 35.0% | |
| TGAAAACCGGGTAATATGTT+CGG | + | chr5_2:40309842-40309861 | None:intergenic | 35.0% | |
| CTCACATATTTAACTGGATG+TGG | + | chr5_2:40309987-40310006 | None:intergenic | 35.0% | |
| TCTGGTCTCACATATTTAAC+TGG | + | chr5_2:40309993-40310012 | None:intergenic | 35.0% | |
| AGTTAAATATGTGAGACCAG+AGG | - | chr5_2:40309992-40310011 | Msa0770170:CDS | 35.0% | |
| GTTTATAAGTGCATGACCTT+TGG | + | chr5_2:40310146-40310165 | None:intergenic | 35.0% | |
| CATAAAGTCCACTTACTTGA+TGG | - | chr5_2:40310288-40310307 | Msa0770170:CDS | 35.0% | |
| ! | CCATATAAAAGTGTGGAAGA+GGG | + | chr5_2:40310475-40310494 | None:intergenic | 35.0% |
| GTATTTGATTCCAGCCTCAA+TGG | - | chr5_2:40307735-40307754 | Msa0770170:three_prime_UTR | 40.0% | |
| ATCCTTCATGACTACCATTG+AGG | + | chr5_2:40307752-40307771 | None:intergenic | 40.0% | |
| AAGAACAAAAACGCCACCTT+CGG | + | chr5_2:40307885-40307904 | None:intergenic | 40.0% | |
| ! | GCGTTTTTGTTCTTGGTTAG+AGG | - | chr5_2:40307891-40307910 | Msa0770170:CDS | 40.0% |
| CACTCGAATCCATCTTACAA+TGG | - | chr5_2:40307984-40308003 | Msa0770170:CDS | 40.0% | |
| ATTCTCCTACCATGAAACAC+AGG | + | chr5_2:40308026-40308045 | None:intergenic | 40.0% | |
| GTAACCAGGTGAATTAGTAC+CGG | - | chr5_2:40308431-40308450 | Msa0770170:CDS | 40.0% | |
| GTTATGGTCTCAATGGATCA+TGG | + | chr5_2:40308506-40308525 | None:intergenic | 40.0% | |
| GCACTCAGTTAAGGTAGTTA+TGG | + | chr5_2:40308522-40308541 | None:intergenic | 40.0% | |
| AAAACCTTGGCACTCAGTTA+AGG | + | chr5_2:40308531-40308550 | None:intergenic | 40.0% | |
| !!! | AAAACTTTTTTGAGGGGGAG+AGG | - | chr5_2:40308578-40308597 | Msa0770170:intron | 40.0% |
| TTCATGGTTCCTCCAAAAAG+AGG | - | chr5_2:40308764-40308783 | Msa0770170:intron | 40.0% | |
| ! | AACATGTGTCCTCTTTTTGG+AGG | + | chr5_2:40308776-40308795 | None:intergenic | 40.0% |
| GTGGCAAATGGCAATTTATC+TGG | + | chr5_2:40308998-40309017 | None:intergenic | 40.0% | |
| AACTGAGGATATGTAGCTGT+TGG | - | chr5_2:40309078-40309097 | Msa0770170:intron | 40.0% | |
| AACTTTAGTGTTGTGTAGGG+AGG | - | chr5_2:40309198-40309217 | Msa0770170:intron | 40.0% | |
| ACTTTAGTGTTGTGTAGGGA+GGG | - | chr5_2:40309199-40309218 | Msa0770170:intron | 40.0% | |
| CTATCTCTGGTCTGTTTCAT+TGG | + | chr5_2:40309323-40309342 | None:intergenic | 40.0% | |
| AGACCAGAGATAGAAAATGC+AGG | - | chr5_2:40309330-40309349 | Msa0770170:intron | 40.0% | |
| GACCAGAGATAGAAAATGCA+GGG | - | chr5_2:40309331-40309350 | Msa0770170:intron | 40.0% | |
| ACCAGAGATAGAAAATGCAG+GGG | - | chr5_2:40309332-40309351 | Msa0770170:intron | 40.0% | |
| ATCAGACCGAACATATTACC+CGG | - | chr5_2:40309833-40309852 | Msa0770170:intron | 40.0% | |
| TCTTGCCTACTTCATTGTCA+AGG | - | chr5_2:40310105-40310124 | Msa0770170:CDS | 40.0% | |
| ATGAGCCTTGACAATGAAGT+AGG | + | chr5_2:40310113-40310132 | None:intergenic | 40.0% | |
| CATCAAGTCCATCAAGTAAG+TGG | + | chr5_2:40310299-40310318 | None:intergenic | 40.0% | |
| AGAGGGACCTAATGGTAATT+TGG | + | chr5_2:40310458-40310477 | None:intergenic | 40.0% | |
| CTAGAAGGAGAAGGTAAGTG+AGG | + | chr5_2:40307599-40307618 | None:intergenic | 45.0% | |
| TACCTTCTCCTTCTAGCATG+TGG | - | chr5_2:40307603-40307622 | Msa0770170:three_prime_UTR | 45.0% | |
| TACCACATGCTAGAAGGAGA+AGG | + | chr5_2:40307608-40307627 | None:intergenic | 45.0% | |
| GTGTGATACCACATGCTAGA+AGG | + | chr5_2:40307614-40307633 | None:intergenic | 45.0% | |
| CTAGCATGTGGTATCACACT+TGG | - | chr5_2:40307615-40307634 | Msa0770170:three_prime_UTR | 45.0% | |
| TTCATGACTACCATTGAGGC+TGG | + | chr5_2:40307748-40307767 | None:intergenic | 45.0% | |
| AGCCTCAATGGTAGTCATGA+AGG | - | chr5_2:40307747-40307766 | Msa0770170:three_prime_UTR | 45.0% | |
| ! | GAAGGTGGCGTTTTTGTTCT+TGG | - | chr5_2:40307884-40307903 | Msa0770170:CDS | 45.0% |
| AGAGTCCTGTGTTTCATGGT+AGG | - | chr5_2:40308018-40308037 | Msa0770170:CDS | 45.0% | |
| TGGTAGGAGAATTCCCAGTA+AGG | - | chr5_2:40308034-40308053 | Msa0770170:CDS | 45.0% | |
| GTTTCCGGTACTAATTCACC+TGG | + | chr5_2:40308438-40308457 | None:intergenic | 45.0% | |
| ACTACCTTAACTGAGTGCCA+AGG | - | chr5_2:40308524-40308543 | Msa0770170:intron | 45.0% | |
| CCAGTTGTAAGCTACTTCAG+TGG | + | chr5_2:40308604-40308623 | None:intergenic | 45.0% | |
| CCACTGAAGTAGCTTACAAC+TGG | - | chr5_2:40308601-40308620 | Msa0770170:intron | 45.0% | |
| ! | TACTACGGTCATGGTTGGTT+GGG | + | chr5_2:40308680-40308699 | None:intergenic | 45.0% |
| ATACTACGGTCATGGTTGGT+TGG | + | chr5_2:40308681-40308700 | None:intergenic | 45.0% | |
| AACCAACCATGACCGTAGTA+TGG | - | chr5_2:40308680-40308699 | Msa0770170:intron | 45.0% | |
| TTCCATACTACGGTCATGGT+TGG | + | chr5_2:40308685-40308704 | None:intergenic | 45.0% | |
| CTTCAACTAGGTAGGTCATG+AGG | - | chr5_2:40309033-40309052 | Msa0770170:intron | 45.0% | |
| GGTCATGAGGACCAAAGTTA+AGG | - | chr5_2:40309046-40309065 | Msa0770170:intron | 45.0% | |
| ! | TCCCCTGCATTTTCTATCTC+TGG | + | chr5_2:40309336-40309355 | None:intergenic | 45.0% |
| AATGGAGAAAAGGGTCTCAG+TGG | - | chr5_2:40309775-40309794 | Msa0770170:intron | 45.0% | |
| AGGGTCTCAGTGGTTTGAAA+TGG | - | chr5_2:40309785-40309804 | Msa0770170:intron | 45.0% | |
| !! | GAAGTTTGACTTGGGTTGAC+TGG | - | chr5_2:40309949-40309968 | Msa0770170:intron | 45.0% |
| !! | ACTTGGGTTGACTGGTCAAA+GGG | - | chr5_2:40309957-40309976 | Msa0770170:CDS | 45.0% |
| CTTCATTGTCAAGGCTCATG+AGG | - | chr5_2:40310114-40310133 | Msa0770170:CDS | 45.0% | |
| !!! | CAATATTTTTTAATTATTAT+AGG | + | chr5_2:40308408-40308427 | None:intergenic | 5.0% |
| TCCTTTCGATCGAGTTCCGA+AGG | - | chr5_2:40307866-40307885 | Msa0770170:CDS | 50.0% | |
| ACCTTCGGAACTCGATCGAA+AGG | + | chr5_2:40307870-40307889 | None:intergenic | 50.0% | |
| TTTCGATCGAGTTCCGAAGG+TGG | - | chr5_2:40307869-40307888 | Msa0770170:CDS | 50.0% | |
| ! | TGTGCCTTTGGCTCCTCTAT+GGG | - | chr5_2:40307917-40307936 | Msa0770170:CDS | 50.0% |
| TTCTCCCATAGAGGAGCCAA+AGG | + | chr5_2:40307924-40307943 | None:intergenic | 50.0% | |
| GTGGAGAGTCCTGTGTTTCA+TGG | - | chr5_2:40308014-40308033 | Msa0770170:CDS | 50.0% | |
| ! | TTGGTTGGGTGGTTTGTGAG+GGG | + | chr5_2:40308666-40308685 | None:intergenic | 50.0% |
| ! | GTTGGTTGGGTGGTTTGTGA+GGG | + | chr5_2:40308667-40308686 | None:intergenic | 50.0% |
| CCTCTTCCATACTACGGTCA+TGG | + | chr5_2:40308689-40308708 | None:intergenic | 50.0% | |
| CCATGACCGTAGTATGGAAG+AGG | - | chr5_2:40308686-40308705 | Msa0770170:intron | 50.0% | |
| CTATGTCATGGCTTACGACC+AGG | - | chr5_2:40309692-40309711 | Msa0770170:intron | 50.0% | |
| TACGACCAGGCAAGTTCAGT+TGG | - | chr5_2:40309705-40309724 | Msa0770170:intron | 50.0% | |
| !! | GACTTGGGTTGACTGGTCAA+AGG | - | chr5_2:40309956-40309975 | Msa0770170:CDS | 50.0% |
| ! | GCTCATGAGGTTTGCTCCAA+AGG | - | chr5_2:40310127-40310146 | Msa0770170:CDS | 50.0% |
| AGTGTGGAAGAGGGACCTAA+TGG | + | chr5_2:40310466-40310485 | None:intergenic | 50.0% | |
| GGTTAGAGGTCCTGTGCCTT+TGG | - | chr5_2:40307905-40307924 | Msa0770170:CDS | 55.0% | |
| ! | CATAGAGGAGCCAAAGGCAC+AGG | + | chr5_2:40307918-40307937 | None:intergenic | 55.0% |
| ! | CTGTGCCTTTGGCTCCTCTA+TGG | - | chr5_2:40307916-40307935 | Msa0770170:CDS | 55.0% |
| ! | GGTTGGTTGGGTGGTTTGTG+AGG | + | chr5_2:40308668-40308687 | None:intergenic | 55.0% |
| ! | TACGGTCATGGTTGGTTGGG+TGG | + | chr5_2:40308677-40308696 | None:intergenic | 55.0% |
| ! | CAAGAAGCGCGTTTGCTAGC+AGG | + | chr5_2:40309575-40309594 | None:intergenic | 55.0% |
| CAGGCAAGTTCAGTTGGACG+CGG | - | chr5_2:40309711-40309730 | Msa0770170:intron | 55.0% | |
| CAAGTTCAGTTGGACGCGGA+CGG | - | chr5_2:40309715-40309734 | Msa0770170:intron | 55.0% | |
| ! | TGGGTTGACTGGTCAAAGGG+TGG | - | chr5_2:40309960-40309979 | Msa0770170:CDS | 55.0% |
| ! | GTTTGCTAGCAGGCGACGCT+CGG | + | chr5_2:40309565-40309584 | None:intergenic | 60.0% |
| CGCGTCCAACTGAACTTGCC+TGG | + | chr5_2:40309713-40309732 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 40307512 | 40310494 | 40307512 | ID=Msa0770170;Name=Msa0770170 |
| chr5_2 | mRNA | 40307512 | 40310494 | 40307512 | ID=Msa0770170-mRNA-1;Parent=Msa0770170;Name=Msa0770170-mRNA-1;_AED=0.02;_eAED=0.02;_QI=7|1|1|1|1|1|2|331|390 |
| chr5_2 | exon | 40307512 | 40308478 | 40307512 | ID=Msa0770170-mRNA-1:exon:12887;Parent=Msa0770170-mRNA-1 |
| chr5_2 | exon | 40309951 | 40310494 | 40309951 | ID=Msa0770170-mRNA-1:exon:12886;Parent=Msa0770170-mRNA-1 |
| chr5_2 | five_prime_UTR | 40310488 | 40310494 | 40310488 | ID=Msa0770170-mRNA-1:five_prime_utr;Parent=Msa0770170-mRNA-1 |
| chr5_2 | CDS | 40309951 | 40310487 | 40309951 | ID=Msa0770170-mRNA-1:cds;Parent=Msa0770170-mRNA-1 |
| chr5_2 | CDS | 40307843 | 40308478 | 40307843 | ID=Msa0770170-mRNA-1:cds;Parent=Msa0770170-mRNA-1 |
| chr5_2 | three_prime_UTR | 40307512 | 40307842 | 40307512 | ID=Msa0770170-mRNA-1:three_prime_utr;Parent=Msa0770170-mRNA-1 |
| Gene Sequence |
| Protein sequence |
