Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731480 | XP_003615002.1 | 96.386 | 332 | 11 | 1 | 1 | 331 | 1 | 332 | 0.0 | 662 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731480 | sp|Q55CU8|PITC_DICDI | 31.507 | 219 | 141 | 5 | 42 | 252 | 69 | 286 | 2.45e-33 | 129 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731480 | G7KA58 | 96.386 | 332 | 11 | 1 | 1 | 331 | 1 | 332 | 0.0 | 662 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0731480 | Msa1089450 | 0.802607 | 5.176503e-49 | -8.615850e-47 |
| Msa0731480 | Msa1122310 | -0.807718 | 4.407336e-50 | -8.615850e-47 |
| Msa0731480 | Msa1160740 | -0.803226 | 3.855974e-49 | -8.615850e-47 |
| Msa0731480 | Msa1213980 | 0.802694 | 4.968646e-49 | -8.615850e-47 |
| Msa0731480 | Msa1231840 | 0.816774 | 4.650224e-52 | -8.615850e-47 |
| Msa0731480 | Msa1312520 | 0.801237 | 9.898190e-49 | -8.615850e-47 |
| Msa0295460 | Msa0731480 | -0.818179 | 2.243809e-52 | -8.615850e-47 |
| Msa0317970 | Msa0731480 | 0.814719 | 1.335048e-51 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731480 | MtrunA17_Chr5g0425421 | 96.386 | 332 | 11 | 1 | 1 | 331 | 1 | 332 | 0.0 | 662 |
| Msa0731480 | MtrunA17_Chr3g0115591 | 66.340 | 306 | 99 | 2 | 1 | 303 | 1 | 305 | 1.27e-150 | 426 |
| Msa0731480 | MtrunA17_Chr7g0254621 | 53.147 | 286 | 130 | 1 | 15 | 300 | 13 | 294 | 5.03e-112 | 328 |
| Msa0731480 | MtrunA17_Chr8g0373391 | 53.036 | 247 | 115 | 1 | 22 | 267 | 19 | 265 | 4.66e-97 | 289 |
| Msa0731480 | MtrunA17_Chr1g0155071 | 47.101 | 276 | 133 | 2 | 20 | 282 | 17 | 292 | 6.38e-93 | 278 |
| Msa0731480 | MtrunA17_Chr3g0131581 | 28.636 | 220 | 150 | 5 | 25 | 241 | 47 | 262 | 7.62e-24 | 98.6 |
| Msa0731480 | MtrunA17_Chr8g0385691 | 28.141 | 199 | 137 | 5 | 46 | 241 | 47 | 242 | 3.49e-20 | 88.2 |
| Msa0731480 | MtrunA17_Chr4g0058811 | 29.341 | 167 | 113 | 3 | 52 | 215 | 77 | 241 | 1.02e-19 | 87.0 |
| Msa0731480 | MtrunA17_Chr8g0385681 | 27.136 | 199 | 139 | 5 | 46 | 241 | 50 | 245 | 4.80e-19 | 85.1 |
| Msa0731480 | MtrunA17_Chr1g0205531 | 27.586 | 203 | 138 | 4 | 17 | 212 | 7 | 207 | 6.08e-19 | 87.0 |
| Msa0731480 | MtrunA17_Chr4g0058791 | 25.000 | 160 | 118 | 1 | 49 | 206 | 72 | 231 | 6.29e-16 | 76.3 |
| Msa0731480 | MtrunA17_Chr1g0161441 | 26.339 | 224 | 152 | 7 | 26 | 241 | 10 | 228 | 2.07e-13 | 68.9 |
| Msa0731480 | MtrunA17_Chr4g0014901 | 25.116 | 215 | 138 | 7 | 45 | 241 | 268 | 477 | 1.94e-11 | 65.1 |
| Msa0731480 | MtrunA17_Chr3g0131071 | 23.832 | 214 | 143 | 5 | 45 | 241 | 246 | 456 | 8.45e-11 | 63.2 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0731480 | AT1G22180.2 | 64.931 | 288 | 89 | 3 | 12 | 298 | 12 | 288 | 1.58e-133 | 382 |
| Msa0731480 | AT1G22180.4 | 64.931 | 288 | 89 | 3 | 12 | 298 | 12 | 288 | 1.58e-133 | 382 |
| Msa0731480 | AT4G08690.2 | 64.173 | 254 | 91 | 0 | 9 | 262 | 6 | 259 | 1.31e-125 | 362 |
| Msa0731480 | AT4G08690.1 | 64.173 | 254 | 91 | 0 | 9 | 262 | 6 | 259 | 1.31e-125 | 362 |
| Msa0731480 | AT4G08690.3 | 64.173 | 254 | 91 | 0 | 9 | 262 | 6 | 259 | 1.31e-125 | 362 |
| Msa0731480 | AT1G22180.3 | 66.239 | 234 | 67 | 3 | 66 | 298 | 1 | 223 | 2.32e-109 | 319 |
| Msa0731480 | AT1G22180.1 | 66.239 | 234 | 67 | 3 | 66 | 298 | 1 | 223 | 2.32e-109 | 319 |
| Msa0731480 | AT1G75170.2 | 50.602 | 249 | 122 | 1 | 20 | 267 | 18 | 266 | 3.35e-95 | 285 |
| Msa0731480 | AT1G75170.1 | 50.602 | 249 | 122 | 1 | 20 | 267 | 18 | 266 | 3.35e-95 | 285 |
| Msa0731480 | AT4G36640.1 | 46.816 | 267 | 132 | 2 | 20 | 276 | 15 | 281 | 4.58e-89 | 269 |
| Msa0731480 | AT4G36640.3 | 46.816 | 267 | 132 | 2 | 20 | 276 | 15 | 281 | 4.58e-89 | 269 |
| Msa0731480 | AT4G36640.2 | 47.573 | 206 | 107 | 1 | 66 | 270 | 1 | 206 | 9.95e-70 | 217 |
| Msa0731480 | AT1G75170.3 | 47.802 | 182 | 94 | 1 | 87 | 267 | 2 | 183 | 6.59e-62 | 196 |
| Msa0731480 | AT1G05370.1 | 29.442 | 197 | 133 | 3 | 21 | 212 | 14 | 209 | 2.69e-19 | 88.6 |
| Msa0731480 | AT5G63060.1 | 29.240 | 171 | 108 | 4 | 52 | 215 | 78 | 242 | 1.14e-18 | 84.7 |
| Msa0731480 | AT5G63060.2 | 28.736 | 174 | 111 | 4 | 49 | 215 | 40 | 207 | 1.48e-18 | 83.6 |
| Msa0731480 | AT1G01630.1 | 29.648 | 199 | 134 | 6 | 46 | 241 | 50 | 245 | 5.66e-18 | 82.4 |
| Msa0731480 | AT3G22410.1 | 29.474 | 190 | 127 | 4 | 25 | 208 | 7 | 195 | 9.00e-18 | 84.0 |
Find 91 sgRNAs with CRISPR-Local
Find 263 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ACAAGAAGATTCCATCTTTC+TGG | 0.140967 | 5_1:-42327585 | Msa0731480:CDS |
| CTTATGCTGATTCCGATATT+TGG | 0.142716 | 5_1:+42331620 | None:intergenic |
| TATATTCTGCTCTCCATTTA+AGG | 0.143870 | 5_1:+42329184 | None:intergenic |
| CATCCATCTCAAGGTATTTA+AGG | 0.179259 | 5_1:-42329254 | Msa0731480:CDS |
| TCCAACTGATGTTCCTTCTT+TGG | 0.208025 | 5_1:-42327536 | Msa0731480:CDS |
| TATGGAGAATTTATTTGATT+TGG | 0.226968 | 5_1:-42327689 | Msa0731480:CDS |
| ATTTGATCTGTAGATCTTTC+CGG | 0.236602 | 5_1:+42328892 | None:intergenic |
| TAAATTCTCCATAATCTTCT+TGG | 0.241842 | 5_1:+42327699 | None:intergenic |
| GCGCCTTCAAAATTTAAAAT+AGG | 0.244508 | 5_1:-42327346 | Msa0731480:three_prime_UTR |
| GCATTCCATGCCAGTTTAAA+AGG | 0.265622 | 5_1:+42327205 | None:intergenic |
| GGTCTGGCTGGTTGATTTCC+AGG | 0.274368 | 5_1:-42328486 | Msa0731480:CDS |
| TTAAAATGACATGATGTTAC+TGG | 0.279001 | 5_1:-42327241 | Msa0731480:three_prime_UTR |
| CTCACCCAGCGGATCTCTTC+TGG | 0.279820 | 5_1:+42329159 | None:intergenic |
| GTTGAGCACGATTGATAGTT+TGG | 0.281541 | 5_1:+42331435 | None:intergenic |
| CAGACCATCTGTTCCTGTTC+TGG | 0.316430 | 5_1:+42328503 | None:intergenic |
| TGTTGAAGCAGACCCTTAAA+TGG | 0.322828 | 5_1:-42329197 | Msa0731480:CDS |
| AATGAGGTGAGAAAGCTAAT+AGG | 0.341107 | 5_1:-42329315 | Msa0731480:CDS |
| TCAGAACACCAAGAAGATTA+TGG | 0.346204 | 5_1:-42327707 | Msa0731480:CDS |
| ATATTCTGCTCTCCATTTAA+GGG | 0.352370 | 5_1:+42329185 | None:intergenic |
| ATTGCCAGACCCAGCCGTTC+AGG | 0.360616 | 5_1:+42328395 | None:intergenic |
| AACTATCAATCGTGCTCAAC+AGG | 0.384307 | 5_1:-42331432 | Msa0731480:intron |
| TCTAAATCTTTCACCAGAAC+AGG | 0.385083 | 5_1:-42328516 | Msa0731480:CDS |
| ACCTTTCCCTGCTGTTCTGC+AGG | 0.385336 | 5_1:+42329473 | None:intergenic |
| TAAGTCTTGGTATCTAATAT+AGG | 0.393551 | 5_1:+42327760 | None:intergenic |
| CTTGACTTTGTTATAAGTCT+TGG | 0.401350 | 5_1:+42327747 | None:intergenic |
| GCATATTTATTTATGTCAAA+TGG | 0.405118 | 5_1:+42327628 | None:intergenic |
| GACCATCTTGAATCTGCATT+CGG | 0.411014 | 5_1:-42327667 | Msa0731480:CDS |
| AAACAATATTTCCATCTATG+AGG | 0.418554 | 5_1:+42327151 | None:intergenic |
| TTATCCTGAACGGCTGGGTC+TGG | 0.419035 | 5_1:-42328399 | Msa0731480:CDS |
| ATTTCCCTTGTCCAGAAAGA+TGG | 0.420325 | 5_1:+42327574 | None:intergenic |
| TAAGTATTTAGTGTACTGTA+TGG | 0.423515 | 5_1:-42328549 | Msa0731480:CDS |
| TTGAGCACGATTGATAGTTT+GGG | 0.424470 | 5_1:+42331436 | None:intergenic |
| ATGAGGTGAGAAAGCTAATA+GGG | 0.434441 | 5_1:-42329314 | Msa0731480:CDS |
| CTGAAGAAAACTGCCTCTAA+TGG | 0.437559 | 5_1:-42329515 | Msa0731480:CDS |
| TTCATTTCATTGTGTTCAGC+AGG | 0.440411 | 5_1:-42331532 | Msa0731480:five_prime_UTR |
| GGTATTTAAGGGCACGGAGT+TGG | 0.446423 | 5_1:-42329242 | Msa0731480:CDS |
| GGTGACGAACACCGGCTTAG+TGG | 0.449502 | 5_1:-42327449 | Msa0731480:CDS |
| TGTAATGAGACCTGCTCGTC+AGG | 0.451211 | 5_1:-42328840 | Msa0731480:intron |
| GTTAGTGTGTGTCCAAATAT+CGG | 0.452592 | 5_1:-42331632 | Msa0731480:five_prime_UTR |
| ATCCATCTCAAGGTATTTAA+GGG | 0.453958 | 5_1:-42329253 | Msa0731480:CDS |
| GTTAATACCTGCAGAACAGC+AGG | 0.463934 | 5_1:-42329480 | Msa0731480:CDS |
| CAGAACTCGAAGACAACAAA+AGG | 0.472077 | 5_1:-42328578 | Msa0731480:CDS |
| AATCTTCGAACCATTCTTCA+CGG | 0.472475 | 5_1:-42328354 | Msa0731480:intron |
| ATTGATAGTTTGGGAGTTGG+TGG | 0.474028 | 5_1:+42331445 | None:intergenic |
| GTCTGGCTGGTTGATTTCCA+GGG | 0.475055 | 5_1:-42328485 | Msa0731480:CDS |
| AGAGCATTATCCTGAACGGC+TGG | 0.477449 | 5_1:-42328405 | Msa0731480:CDS |
| AATAGGGCCACTGTCTAGTA+AGG | 0.490184 | 5_1:-42329298 | Msa0731480:CDS |
| TTGATCATGGTCCACTAAGC+CGG | 0.490671 | 5_1:+42327438 | None:intergenic |
| CAGAACAGGAACAGATGGTC+TGG | 0.497286 | 5_1:-42328502 | Msa0731480:CDS |
| TCCAAAGAAGGAACATCAGT+TGG | 0.503504 | 5_1:+42327535 | None:intergenic |
| ACGATTGATAGTTTGGGAGT+TGG | 0.518948 | 5_1:+42331442 | None:intergenic |
| ACATCAGTTGGAACTGAGGA+TGG | 0.526219 | 5_1:+42327547 | None:intergenic |
| TCAAATTATACTGACAAGCA+TGG | 0.528276 | 5_1:-42328875 | Msa0731480:CDS |
| AACTTAGGTACCGTGAAGAA+TGG | 0.533637 | 5_1:+42328344 | None:intergenic |
| ATATGCTGAGAGAATGAAAG+AGG | 0.538004 | 5_1:-42327611 | Msa0731480:CDS |
| AGTGGACCATGATCAAAACT+TGG | 0.538007 | 5_1:-42327431 | Msa0731480:CDS |
| TGTTCGTCACCGAGTCAGAA+TGG | 0.541017 | 5_1:+42327461 | None:intergenic |
| AACAATATTTCCATCTATGA+GGG | 0.541702 | 5_1:+42327152 | None:intergenic |
| GATTCAGCTGATTAAAACTC+AGG | 0.551226 | 5_1:-42331323 | Msa0731480:intron |
| ACAGGAACAGATGGTCTGGC+TGG | 0.552035 | 5_1:-42328498 | Msa0731480:CDS |
| TTAGAAGATACCTGACGAGC+AGG | 0.554698 | 5_1:+42328830 | None:intergenic |
| ATAAACCAGAAGAGATCCGC+TGG | 0.555638 | 5_1:-42329164 | Msa0731480:CDS |
| GATTCCATCTTTCTGGACAA+GGG | 0.562395 | 5_1:-42327578 | Msa0731480:CDS |
| TGCCCTTAAATACCTTGAGA+TGG | 0.564051 | 5_1:+42329251 | None:intergenic |
| AGATTCCATCTTTCTGGACA+AGG | 0.565687 | 5_1:-42327579 | Msa0731480:CDS |
| CACCGAATGCAGATTCAAGA+TGG | 0.567730 | 5_1:+42327665 | None:intergenic |
| AATTTAATCGAATCCAAAGA+AGG | 0.569857 | 5_1:+42327523 | None:intergenic |
| GTTGCTGAAGAAGCAGAGAC+CGG | 0.569959 | 5_1:-42328911 | Msa0731480:CDS |
| CAAATTATACTGACAAGCAT+GGG | 0.572312 | 5_1:-42328874 | Msa0731480:CDS |
| ACGGAGTTGGAATGTTAAGA+AGG | 0.576078 | 5_1:-42329229 | Msa0731480:CDS |
| TTCACTCATGTTAGTCAGTG+TGG | 0.576475 | 5_1:+42329541 | None:intergenic |
| GCCACTGTCTAGTAAGGCAT+CGG | 0.576724 | 5_1:-42329292 | Msa0731480:CDS |
| ACCTGCAGAACAGCAGGGAA+AGG | 0.579026 | 5_1:-42329474 | Msa0731480:intron |
| TAAATTTCACGCAGAAAACA+AGG | 0.588957 | 5_1:+42327299 | None:intergenic |
| TCAAAACTTGGTTAATCATG+AGG | 0.589481 | 5_1:-42327419 | Msa0731480:CDS |
| GAATCAGCATAAGTATCTAT+CGG | 0.590698 | 5_1:-42331610 | Msa0731480:five_prime_UTR |
| TATGTGACATATTGAAACCC+TGG | 0.596470 | 5_1:+42328468 | None:intergenic |
| TTCACCAGAACAGGAACAGA+TGG | 0.596555 | 5_1:-42328507 | Msa0731480:CDS |
| GTTCTGATGCATCCATCTCA+AGG | 0.596911 | 5_1:-42329263 | Msa0731480:CDS |
| TCTGACTCGGTGACGAACAC+CGG | 0.605763 | 5_1:-42327457 | Msa0731480:CDS |
| TCTCAAGGTATTTAAGGGCA+CGG | 0.606770 | 5_1:-42329248 | Msa0731480:CDS |
| TACAAGAGCATTATCCTGAA+CGG | 0.611294 | 5_1:-42328409 | Msa0731480:CDS |
| GAGCATTATCCTGAACGGCT+GGG | 0.617295 | 5_1:-42328404 | Msa0731480:CDS |
| AGGAACATCAGTTGGAACTG+AGG | 0.624809 | 5_1:+42327543 | None:intergenic |
| TGTTTCCTTCTAGATCAATG+AGG | 0.630212 | 5_1:-42329331 | Msa0731480:intron |
| CATCTTGAATCTGCATTCGG+TGG | 0.633134 | 5_1:-42327664 | Msa0731480:CDS |
| GAAAATAGTCCATTCTGACT+CGG | 0.649903 | 5_1:-42327470 | Msa0731480:CDS |
| AAAATTTAAAATAGGCACTG+AGG | 0.668241 | 5_1:-42327338 | Msa0731480:three_prime_UTR |
| TTAATACCTGCAGAACAGCA+GGG | 0.676621 | 5_1:-42329479 | Msa0731480:CDS |
| TAAACCAGAAGAGATCCGCT+GGG | 0.689386 | 5_1:-42329163 | Msa0731480:intron |
| ACCGATGCCTTACTAGACAG+TGG | 0.698458 | 5_1:+42329291 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | TATTAATAAATTTTGAAAGT+AGG | + | chr5_1:42328179-42328198 | None:intergenic | 10.0% |
| !! | TTAAAAATTTAAAGAAAAAC+AGG | + | chr5_1:42329656-42329675 | None:intergenic | 10.0% |
| !! | TAAGAAAAGAAAAAAAATGA+AGG | + | chr5_1:42327306-42327325 | None:intergenic | 15.0% |
| !!! | ACATAAATTTTCCAAAAATT+AGG | + | chr5_1:42327860-42327879 | None:intergenic | 15.0% |
| !!! | AAAATTTATGTTTTTTCACT+TGG | - | chr5_1:42327869-42327888 | Msa0731480:intron | 15.0% |
| !!! | AAATTTATGTTTTTTCACTT+GGG | - | chr5_1:42327870-42327889 | Msa0731480:intron | 15.0% |
| !!! | TCTTATTTGATAAATATACA+AGG | - | chr5_1:42328565-42328584 | Msa0731480:CDS | 15.0% |
| !! | CATTTAGAAAATAAAAGAAA+GGG | + | chr5_1:42329147-42329166 | None:intergenic | 15.0% |
| !! | ACATTTAGAAAATAAAAGAA+AGG | + | chr5_1:42329148-42329167 | None:intergenic | 15.0% |
| !! | AAATAATCTAAGAAAATAGA+TGG | + | chr5_1:42329820-42329839 | None:intergenic | 15.0% |
| !! | ATAAAATATTAGAAATTCCT+CGG | + | chr5_1:42330652-42330671 | None:intergenic | 15.0% |
| !!! | TTAATCTAATTTTTTGTTTC+TGG | - | chr5_1:42330864-42330883 | Msa0731480:intron | 15.0% |
| !! | TGTAATCACATATATCATAT+CGG | + | chr5_1:42327544-42327563 | None:intergenic | 20.0% |
| !! | TTATATTAAAGTGAATTGCA+AGG | + | chr5_1:42327668-42327687 | None:intergenic | 20.0% |
| !!! | ATTTTCCAAAAATTAGGAAA+AGG | + | chr5_1:42327854-42327873 | None:intergenic | 20.0% |
| !! | TTAAATTAGAGAACATAAGT+TGG | - | chr5_1:42328282-42328301 | Msa0731480:intron | 20.0% |
| !!! | AGCGATTTTTCTTTTTTTAA+GGG | - | chr5_1:42328367-42328386 | Msa0731480:CDS | 20.0% |
| !! | GCTATATATATTACAACTAT+AGG | - | chr5_1:42328519-42328538 | Msa0731480:CDS | 20.0% |
| !!! | TTTTTTTGAACTATTACTAC+CGG | - | chr5_1:42328860-42328879 | Msa0731480:CDS | 20.0% |
| !! | TACTGCATAAATTCTTTATA+CGG | - | chr5_1:42328933-42328952 | Msa0731480:intron | 20.0% |
| !!! | CTAATTCATTTAAGATTCAT+GGG | - | chr5_1:42329044-42329063 | Msa0731480:intron | 20.0% |
| !!! | TGTGTTTTTTTGAAAAATAC+AGG | - | chr5_1:42329072-42329091 | Msa0731480:intron | 20.0% |
| !!! | GTGTTTTTTTGAAAAATACA+GGG | - | chr5_1:42329073-42329092 | Msa0731480:intron | 20.0% |
| !! | AATTAAATTGACATCCATTA+TGG | + | chr5_1:42329122-42329141 | None:intergenic | 20.0% |
| !! | AGTGATACATCTTAAATTTA+TGG | - | chr5_1:42330544-42330563 | Msa0731480:intron | 20.0% |
| !! | TAAAATATTAGAAATTCCTC+GGG | + | chr5_1:42330651-42330670 | None:intergenic | 20.0% |
| !! | TATGGAGAATTTATTTGATT+TGG | - | chr5_1:42331094-42331113 | Msa0731480:intron | 20.0% |
| !! | GCATATTTATTTATGTCAAA+TGG | + | chr5_1:42331158-42331177 | None:intergenic | 20.0% |
| ! | AAACAGTAACAAACGAAATT+AGG | + | chr5_1:42327412-42327431 | None:intergenic | 25.0% |
| !! | TTGTGTTTTCAAAACTTAGT+TGG | - | chr5_1:42327436-42327455 | Msa0731480:CDS | 25.0% |
| !!! | GTGATTACATTTAATTTTGC+TGG | - | chr5_1:42327555-42327574 | Msa0731480:CDS | 25.0% |
| ! | CACTATTAGAGTAATCTATA+TGG | + | chr5_1:42327706-42327725 | None:intergenic | 25.0% |
| ! | TACTCTAATAGTGTTTGAAT+AGG | - | chr5_1:42327713-42327732 | Msa0731480:CDS | 25.0% |
| ! | AGTGTTTGAATAGGAAAAAT+AGG | - | chr5_1:42327722-42327741 | Msa0731480:CDS | 25.0% |
| ! | CTTGAAAATTCATATGCAAA+CGG | + | chr5_1:42327819-42327838 | None:intergenic | 25.0% |
| !! | TCTAACCTTTTCCTAATTTT+TGG | - | chr5_1:42327846-42327865 | Msa0731480:intron | 25.0% |
| ! | GTTACCTGAAATTAAGTTAA+GGG | - | chr5_1:42327991-42328010 | Msa0731480:intron | 25.0% |
| !! | ATGAATTTAGCCCTTTAAAA+TGG | + | chr5_1:42328260-42328279 | None:intergenic | 25.0% |
| !!! | GAGCGATTTTTCTTTTTTTA+AGG | - | chr5_1:42328366-42328385 | Msa0731480:CDS | 25.0% |
| !!! | GCGATTTTTCTTTTTTTAAG+GGG | - | chr5_1:42328368-42328387 | Msa0731480:CDS | 25.0% |
| ! | ATATAGCCCACAATATAAAT+TGG | + | chr5_1:42328506-42328525 | None:intergenic | 25.0% |
| !! | TGAAATTTTTGTTCCATGAA+GGG | - | chr5_1:42328607-42328626 | Msa0731480:intron | 25.0% |
| ! | TTGAATGTAATCACATGTAT+CGG | + | chr5_1:42328832-42328851 | None:intergenic | 25.0% |
| ! | GGTAGTAATAGTTCAAAAAA+AGG | + | chr5_1:42328861-42328880 | None:intergenic | 25.0% |
| !! | TGACAGAAAACTTAAACTTT+TGG | - | chr5_1:42329012-42329031 | Msa0731480:intron | 25.0% |
| !!! | GAAAACTTAAACTTTTGGAA+TGG | - | chr5_1:42329017-42329036 | Msa0731480:intron | 25.0% |
| ! | CCATGAATCTTAAATGAATT+AGG | + | chr5_1:42329046-42329065 | None:intergenic | 25.0% |
| !! | CCTAATTCATTTAAGATTCA+TGG | - | chr5_1:42329043-42329062 | Msa0731480:intron | 25.0% |
| !!! | GACATTTTAAAGAACCATAA+TGG | - | chr5_1:42329105-42329124 | Msa0731480:intron | 25.0% |
| ! | AAGAGATTACATAGATAACT+TGG | - | chr5_1:42329177-42329196 | Msa0731480:CDS | 25.0% |
| ! | TATGTCATATTAACACATAG+GGG | + | chr5_1:42329342-42329361 | None:intergenic | 25.0% |
| ! | GTATGTCATATTAACACATA+GGG | + | chr5_1:42329343-42329362 | None:intergenic | 25.0% |
| ! | AGTATGTCATATTAACACAT+AGG | + | chr5_1:42329344-42329363 | None:intergenic | 25.0% |
| !!! | AAACAACCATATTGATTTGT+GGG | + | chr5_1:42329437-42329456 | None:intergenic | 25.0% |
| ! | AAGACTTAACTATCTGATTT+CGG | - | chr5_1:42329734-42329753 | Msa0731480:intron | 25.0% |
| ! | TGTAGAAATGTAAACTGATA+AGG | + | chr5_1:42330036-42330055 | None:intergenic | 25.0% |
| ! | TTCTGAATTCAAAACAATGA+AGG | + | chr5_1:42330190-42330209 | None:intergenic | 25.0% |
| ! | TAAGTATTTAGTGTACTGTA+TGG | - | chr5_1:42330234-42330253 | Msa0731480:intron | 25.0% |
| !!! | GTATCATGTTGATTTTGTTT+TGG | - | chr5_1:42330508-42330527 | Msa0731480:intron | 25.0% |
| ! | GATACATCTTAAATTTATGG+AGG | - | chr5_1:42330547-42330566 | Msa0731480:intron | 25.0% |
| ! | AAAATATTAGAAATTCCTCG+GGG | + | chr5_1:42330650-42330669 | None:intergenic | 25.0% |
| ! | AATTATCAACTTATCTCAAG+CGG | + | chr5_1:42330689-42330708 | None:intergenic | 25.0% |
| ! | CACATAAAAGAAGAAGAAAA+CGG | + | chr5_1:42330768-42330787 | None:intergenic | 25.0% |
| ! | TAAGTCTTGGTATCTAATAT+AGG | + | chr5_1:42331026-42331045 | None:intergenic | 25.0% |
| ! | TAAATTCTCCATAATCTTCT+TGG | + | chr5_1:42331087-42331106 | None:intergenic | 25.0% |
| ! | AATTTAATCGAATCCAAAGA+AGG | + | chr5_1:42331263-42331282 | None:intergenic | 25.0% |
| !!! | GTGCCTATTTTAAATTTTGA+AGG | + | chr5_1:42331443-42331462 | None:intergenic | 25.0% |
| !! | AAAATTTAAAATAGGCACTG+AGG | - | chr5_1:42331445-42331464 | Msa0731480:five_prime_UTR | 25.0% |
| ! | TTAAAATGACATGATGTTAC+TGG | - | chr5_1:42331542-42331561 | Msa0731480:five_prime_UTR | 25.0% |
| !!! | AAAGTTCTAACCTTTTAAAC+TGG | - | chr5_1:42331568-42331587 | Msa0731480:five_prime_UTR | 25.0% |
| ! | AACAATATTTCCATCTATGA+GGG | + | chr5_1:42331634-42331653 | None:intergenic | 25.0% |
| ! | AAACAATATTTCCATCTATG+AGG | + | chr5_1:42331635-42331654 | None:intergenic | 25.0% |
| GAATCAGCATAAGTATCTAT+CGG | - | chr5_1:42327173-42327192 | Msa0731480:three_prime_UTR | 30.0% | |
| CAAAAACAAGAACAGAACTA+TGG | + | chr5_1:42327222-42327241 | None:intergenic | 30.0% | |
| AAGAGATGTAAGAATGTTGT+TGG | + | chr5_1:42327381-42327400 | None:intergenic | 30.0% | |
| CTTTGTCAGTGTTTCATAAT+TGG | - | chr5_1:42327602-42327621 | Msa0731480:CDS | 30.0% | |
| TTAGAGTAATCTATATGGAC+AGG | + | chr5_1:42327701-42327720 | None:intergenic | 30.0% | |
| CGTTACCTGAAATTAAGTTA+AGG | - | chr5_1:42327990-42328009 | Msa0731480:intron | 30.0% | |
| TCATCCCTTAACTTAATTTC+AGG | + | chr5_1:42327998-42328017 | None:intergenic | 30.0% | |
| !!! | AGACCAATGTTTTAAGAACA+GGG | + | chr5_1:42328072-42328091 | None:intergenic | 30.0% |
| TATGTATTGCTGTAAGGATT+TGG | - | chr5_1:42328215-42328234 | Msa0731480:intron | 30.0% | |
| ATGTATTGCTGTAAGGATTT+GGG | - | chr5_1:42328216-42328235 | Msa0731480:intron | 30.0% | |
| !! | TTGGTTTGGTTTCTTATCAT+CGG | + | chr5_1:42328476-42328495 | None:intergenic | 30.0% |
| !! | AATATAAATTGGCTTGCGTT+TGG | + | chr5_1:42328495-42328514 | None:intergenic | 30.0% |
| ! | CTGAAATTTTTGTTCCATGA+AGG | - | chr5_1:42328606-42328625 | Msa0731480:intron | 30.0% |
| ATACATTGAAATTCCCTTCA+TGG | + | chr5_1:42328623-42328642 | None:intergenic | 30.0% | |
| TACTGCACATATTATTGCTA+TGG | - | chr5_1:42328673-42328692 | Msa0731480:intron | 30.0% | |
| ! | CAGGTATTAACATTTTCACA+TGG | + | chr5_1:42329294-42329313 | None:intergenic | 30.0% |
| GTGTTAATATGACATACTCT+CGG | - | chr5_1:42329346-42329365 | Msa0731480:intron | 30.0% | |
| !! | GAAACAACCATATTGATTTG+TGG | + | chr5_1:42329438-42329457 | None:intergenic | 30.0% |
| ! | ATCCATCTCAAGGTATTTAA+GGG | - | chr5_1:42329530-42329549 | Msa0731480:CDS | 30.0% |
| ATATTCTGCTCTCCATTTAA+GGG | + | chr5_1:42329601-42329620 | None:intergenic | 30.0% | |
| TATATTCTGCTCTCCATTTA+AGG | + | chr5_1:42329602-42329621 | None:intergenic | 30.0% | |
| CAATAATGATATTCAGTTGC+TGG | + | chr5_1:42329709-42329728 | None:intergenic | 30.0% | |
| AGATGAGTCTGTAATTAACT+CGG | + | chr5_1:42329764-42329783 | None:intergenic | 30.0% | |
| !!! | TTGTATTTTTTTGTCGATGC+AGG | - | chr5_1:42329844-42329863 | Msa0731480:intron | 30.0% |
| ATTTGATCTGTAGATCTTTC+CGG | + | chr5_1:42329894-42329913 | None:intergenic | 30.0% | |
| TCAAATTATACTGACAAGCA+TGG | - | chr5_1:42329908-42329927 | Msa0731480:intron | 30.0% | |
| CAAATTATACTGACAAGCAT+GGG | - | chr5_1:42329909-42329928 | Msa0731480:intron | 30.0% | |
| ! | ATGTCTAAGTCAGATGTTTT+AGG | - | chr5_1:42330000-42330019 | Msa0731480:intron | 30.0% |
| ! | TGTCTAAGTCAGATGTTTTA+GGG | - | chr5_1:42330001-42330020 | Msa0731480:intron | 30.0% |
| ! | AAGAATGGTTCGAAGATTTT+AGG | + | chr5_1:42330427-42330446 | None:intergenic | 30.0% |
| ATGTCAGAATGGAAAAACTT+AGG | + | chr5_1:42330457-42330476 | None:intergenic | 30.0% | |
| ATTATCAACTTATCTCAAGC+GGG | + | chr5_1:42330688-42330707 | None:intergenic | 30.0% | |
| TAAAAGAAGAAGAAAACGGA+AGG | + | chr5_1:42330764-42330783 | None:intergenic | 30.0% | |
| AATGCTGAAAGATGAAAACT+TGG | + | chr5_1:42330810-42330829 | None:intergenic | 30.0% | |
| AAAATATATGTTGCTGCAGA+TGG | - | chr5_1:42330995-42331014 | Msa0731480:intron | 30.0% | |
| ! | CTTGACTTTGTTATAAGTCT+TGG | + | chr5_1:42331039-42331058 | None:intergenic | 30.0% |
| !! | GATTAACCAAGTTTTGATCA+TGG | + | chr5_1:42331361-42331380 | None:intergenic | 30.0% |
| TCAAAACTTGGTTAATCATG+AGG | - | chr5_1:42331364-42331383 | Msa0731480:five_prime_UTR | 30.0% | |
| ! | GCGCCTTCAAAATTTAAAAT+AGG | - | chr5_1:42331437-42331456 | Msa0731480:five_prime_UTR | 30.0% |
| TAAATTTCACGCAGAAAACA+AGG | + | chr5_1:42331487-42331506 | None:intergenic | 30.0% | |
| GTTAGTGTGTGTCCAAATAT+CGG | - | chr5_1:42327151-42327170 | Msa0731480:three_prime_UTR | 35.0% | |
| !! | CTTATGCTGATTCCGATATT+TGG | + | chr5_1:42327166-42327185 | None:intergenic | 35.0% |
| TTCATTTCATTGTGTTCAGC+AGG | - | chr5_1:42327251-42327270 | Msa0731480:three_prime_UTR | 35.0% | |
| ! | TTGAGCACGATTGATAGTTT+GGG | + | chr5_1:42327350-42327369 | None:intergenic | 35.0% |
| GATTCAGCTGATTAAAACTC+AGG | - | chr5_1:42327460-42327479 | Msa0731480:CDS | 35.0% | |
| TGTAACAATTAACGTGTGTC+CGG | - | chr5_1:42327491-42327510 | Msa0731480:CDS | 35.0% | |
| TTGCCCTGTTCTTAAAACAT+TGG | - | chr5_1:42328066-42328085 | Msa0731480:intron | 35.0% | |
| !!! | CAGACCAATGTTTTAAGAAC+AGG | + | chr5_1:42328073-42328092 | None:intergenic | 35.0% |
| TCAGAAACTTATCAGACCAA+AGG | - | chr5_1:42328130-42328149 | Msa0731480:intron | 35.0% | |
| CAGAAACTTATCAGACCAAA+GGG | - | chr5_1:42328131-42328150 | Msa0731480:intron | 35.0% | |
| CTTACAGCAATACATATCTG+AGG | + | chr5_1:42328211-42328230 | None:intergenic | 35.0% | |
| CTCAGATATGTATTGCTGTA+AGG | - | chr5_1:42328209-42328228 | Msa0731480:intron | 35.0% | |
| ACGCAAGCCAATTTATATTG+TGG | - | chr5_1:42328496-42328515 | Msa0731480:CDS | 35.0% | |
| CGCAAGCCAATTTATATTGT+GGG | - | chr5_1:42328497-42328516 | Msa0731480:CDS | 35.0% | |
| TGTGCAGTAAATGATCTAGT+GGG | + | chr5_1:42328662-42328681 | None:intergenic | 35.0% | |
| ATGTGCAGTAAATGATCTAG+TGG | + | chr5_1:42328663-42328682 | None:intergenic | 35.0% | |
| ACAGCAATGAGATATCTAAG+TGG | + | chr5_1:42328733-42328752 | None:intergenic | 35.0% | |
| ! | ATGGTTTCAAGCAGAAGTAT+CGG | + | chr5_1:42328766-42328785 | None:intergenic | 35.0% |
| CTTCTGCTTGAAACCATTTA+CGG | - | chr5_1:42328769-42328788 | Msa0731480:intron | 35.0% | |
| !!! | TCTCGGTCTGTTTTAATACT+TGG | - | chr5_1:42329363-42329382 | Msa0731480:intron | 35.0% |
| CTTTGACCCACAAATCAATA+TGG | - | chr5_1:42329428-42329447 | Msa0731480:intron | 35.0% | |
| TGTTTCCTTCTAGATCAATG+AGG | - | chr5_1:42329452-42329471 | Msa0731480:intron | 35.0% | |
| AATGAGGTGAGAAAGCTAAT+AGG | - | chr5_1:42329468-42329487 | Msa0731480:intron | 35.0% | |
| ATGAGGTGAGAAAGCTAATA+GGG | - | chr5_1:42329469-42329488 | Msa0731480:intron | 35.0% | |
| ! | CATCCATCTCAAGGTATTTA+AGG | - | chr5_1:42329529-42329548 | Msa0731480:CDS | 35.0% |
| ATGATATTCAGTTGCTGGTA+GGG | + | chr5_1:42329704-42329723 | None:intergenic | 35.0% | |
| AATGATATTCAGTTGCTGGT+AGG | + | chr5_1:42329705-42329724 | None:intergenic | 35.0% | |
| GAGTTAATTACAGACTCATC+TGG | - | chr5_1:42329763-42329782 | Msa0731480:intron | 35.0% | |
| AATTACAGACTCATCTGGAA+TGG | - | chr5_1:42329768-42329787 | Msa0731480:intron | 35.0% | |
| !! | AGAGTTAAAGAGTGCTTTCT+AGG | + | chr5_1:42330068-42330087 | None:intergenic | 35.0% |
| TCTAAATCTTTCACCAGAAC+AGG | - | chr5_1:42330267-42330286 | Msa0731480:intron | 35.0% | |
| TATGTGACATATTGAAACCC+TGG | + | chr5_1:42330318-42330337 | None:intergenic | 35.0% | |
| !! | TACAAGAGCATTATCCTGAA+CGG | - | chr5_1:42330374-42330393 | Msa0731480:intron | 35.0% |
| ! | AATGGTTCGAAGATTTTAGG+TGG | + | chr5_1:42330424-42330443 | None:intergenic | 35.0% |
| AATCTTCGAACCATTCTTCA+CGG | - | chr5_1:42330429-42330448 | Msa0731480:intron | 35.0% | |
| TGAAGAGTGAAATGTCAGAA+TGG | + | chr5_1:42330468-42330487 | None:intergenic | 35.0% | |
| ACTCTTCAATTTATTCCTGC+TGG | - | chr5_1:42330480-42330499 | Msa0731480:intron | 35.0% | |
| AACATGATACAAAAACCAGC+AGG | + | chr5_1:42330498-42330517 | None:intergenic | 35.0% | |
| !! | AATTCGTTTTGGACTCATTG+TGG | + | chr5_1:42330623-42330642 | None:intergenic | 35.0% |
| CTTTGTATAGAACTGTAGCA+TGG | - | chr5_1:42330729-42330748 | Msa0731480:intron | 35.0% | |
| !!! | TTTTTGTTTCTGGACTTGCA+TGG | - | chr5_1:42330874-42330893 | Msa0731480:intron | 35.0% |
| TCAGAACACCAAGAAGATTA+TGG | - | chr5_1:42331076-42331095 | Msa0731480:intron | 35.0% | |
| ATATGCTGAGAGAATGAAAG+AGG | - | chr5_1:42331172-42331191 | Msa0731480:intron | 35.0% | |
| ACAAGAAGATTCCATCTTTC+TGG | - | chr5_1:42331198-42331217 | Msa0731480:intron | 35.0% | |
| ! | GACTATTTTCTCATTGTCAG+AGG | + | chr5_1:42331303-42331322 | None:intergenic | 35.0% |
| GAAAATAGTCCATTCTGACT+CGG | - | chr5_1:42331313-42331332 | Msa0731480:intron | 35.0% | |
| ! | TCTAACCTTTTAAACTGGCA+TGG | - | chr5_1:42331573-42331592 | Msa0731480:five_prime_UTR | 35.0% |
| ! | ATTGATAGTTTGGGAGTTGG+TGG | + | chr5_1:42327341-42327360 | None:intergenic | 40.0% |
| ! | ACGATTGATAGTTTGGGAGT+TGG | + | chr5_1:42327344-42327363 | None:intergenic | 40.0% |
| ! | GTTGAGCACGATTGATAGTT+TGG | + | chr5_1:42327351-42327370 | None:intergenic | 40.0% |
| AACTATCAATCGTGCTCAAC+AGG | - | chr5_1:42327351-42327370 | Msa0731480:three_prime_UTR | 40.0% | |
| AAAGAAGAGTAGACTCCCTT+TGG | + | chr5_1:42328149-42328168 | None:intergenic | 40.0% | |
| ! | ACATCAGGGGTCCATTTTAA+AGG | - | chr5_1:42328246-42328265 | Msa0731480:intron | 40.0% |
| ! | CATCAGGGGTCCATTTTAAA+GGG | - | chr5_1:42328247-42328266 | Msa0731480:intron | 40.0% |
| AGAAAAATCGCTCGTACTAC+TGG | + | chr5_1:42328359-42328378 | None:intergenic | 40.0% | |
| !!! | TCTTGTTTTCAACTGAGCGT+CGG | - | chr5_1:42328416-42328435 | Msa0731480:CDS | 40.0% |
| !! | AAATTGGCTTGCGTTTGGTT+TGG | + | chr5_1:42328490-42328509 | None:intergenic | 40.0% |
| ATTTCAGAGAAGTTGTGAGC+AGG | + | chr5_1:42328593-42328612 | None:intergenic | 40.0% | |
| ATGATCTAGTGGGACATTTG+CGG | + | chr5_1:42328652-42328671 | None:intergenic | 40.0% | |
| TTCACTCATGTTAGTCAGTG+TGG | + | chr5_1:42329245-42329264 | None:intergenic | 40.0% | |
| ! | CATTAGAGGCAGTTTTCTTC+AGG | + | chr5_1:42329270-42329289 | None:intergenic | 40.0% |
| CTGAAGAAAACTGCCTCTAA+TGG | - | chr5_1:42329268-42329287 | Msa0731480:CDS | 40.0% | |
| ! | CATTTTCACATGGCCATTAG+AGG | + | chr5_1:42329284-42329303 | None:intergenic | 40.0% |
| TTAATACCTGCAGAACAGCA+GGG | - | chr5_1:42329304-42329323 | Msa0731480:CDS | 40.0% | |
| TCTCACCTCATTGATCTAGA+AGG | + | chr5_1:42329460-42329479 | None:intergenic | 40.0% | |
| TGCCCTTAAATACCTTGAGA+TGG | + | chr5_1:42329535-42329554 | None:intergenic | 40.0% | |
| ! | TCTCAAGGTATTTAAGGGCA+CGG | - | chr5_1:42329535-42329554 | Msa0731480:exon | 40.0% |
| ACGGAGTTGGAATGTTAAGA+AGG | - | chr5_1:42329554-42329573 | Msa0731480:intron | 40.0% | |
| TGTTGAAGCAGACCCTTAAA+TGG | - | chr5_1:42329586-42329605 | Msa0731480:intron | 40.0% | |
| ATCTGACTTAGACATGCTAG+AGG | + | chr5_1:42329995-42330014 | None:intergenic | 40.0% | |
| CAGAACTCGAAGACAACAAA+AGG | - | chr5_1:42330205-42330224 | Msa0731480:intron | 40.0% | |
| ! | AACTTAGGTACCGTGAAGAA+TGG | + | chr5_1:42330442-42330461 | None:intergenic | 40.0% |
| AGCATCACATCATCAACTTG+TGG | + | chr5_1:42330582-42330601 | None:intergenic | 40.0% | |
| AGAAGAAAACGGAAGGAGTT+TGG | + | chr5_1:42330757-42330776 | None:intergenic | 40.0% | |
| GACCATCTTGAATCTGCATT+CGG | - | chr5_1:42331116-42331135 | Msa0731480:intron | 40.0% | |
| AGATTCCATCTTTCTGGACA+AGG | - | chr5_1:42331204-42331223 | Msa0731480:intron | 40.0% | |
| GATTCCATCTTTCTGGACAA+GGG | - | chr5_1:42331205-42331224 | Msa0731480:intron | 40.0% | |
| ATTTCCCTTGTCCAGAAAGA+TGG | + | chr5_1:42331212-42331231 | None:intergenic | 40.0% | |
| TCCAACTGATGTTCCTTCTT+TGG | - | chr5_1:42331247-42331266 | Msa0731480:intron | 40.0% | |
| TCCAAAGAAGGAACATCAGT+TGG | + | chr5_1:42331251-42331270 | None:intergenic | 40.0% | |
| AGTGGACCATGATCAAAACT+TGG | - | chr5_1:42331352-42331371 | Msa0731480:five_prime_UTR | 40.0% | |
| GCATTCCATGCCAGTTTAAA+AGG | + | chr5_1:42331581-42331600 | None:intergenic | 40.0% | |
| ! | CTATTTTCTGCCCTCATAGA+TGG | - | chr5_1:42331621-42331640 | Msa0731480:five_prime_UTR | 40.0% |
| !! | ATCATATCGGTGTCAGACAC+CGG | + | chr5_1:42327531-42327550 | None:intergenic | 45.0% |
| CACTGCATCACTCAACACAT+CGG | - | chr5_1:42327637-42327656 | Msa0731480:CDS | 45.0% | |
| ! | GGTCTGAGTCTGAAACTCAT+AGG | - | chr5_1:42328087-42328106 | Msa0731480:intron | 45.0% |
| ATTTGGGTCCCACAACATCA+GGG | - | chr5_1:42328232-42328251 | Msa0731480:intron | 45.0% | |
| AAATGGACCCCTGATGTTGT+GGG | + | chr5_1:42328243-42328262 | None:intergenic | 45.0% | |
| AAAATGGACCCCTGATGTTG+TGG | + | chr5_1:42328244-42328263 | None:intergenic | 45.0% | |
| ! | GACAAGACGAACAGAAGTAC+CGG | - | chr5_1:42328304-42328323 | Msa0731480:intron | 45.0% |
| !! | AACAGAAGTACCGGTAACGA+GGG | - | chr5_1:42328313-42328332 | Msa0731480:intron | 45.0% |
| CTTGAAACCATTTACGGTGC+TGG | - | chr5_1:42328775-42328794 | Msa0731480:intron | 45.0% | |
| ! | ACATGTATCGGTCTCGTATC+GGG | + | chr5_1:42328820-42328839 | None:intergenic | 45.0% |
| ! | CACATGTATCGGTCTCGTAT+CGG | + | chr5_1:42328821-42328840 | None:intergenic | 45.0% |
| ACTGACACAGACATCAGACA+TGG | + | chr5_1:42328902-42328921 | None:intergenic | 45.0% | |
| GTTAATACCTGCAGAACAGC+AGG | - | chr5_1:42329303-42329322 | Msa0731480:CDS | 45.0% | |
| AATAGGGCCACTGTCTAGTA+AGG | - | chr5_1:42329485-42329504 | Msa0731480:CDS | 45.0% | |
| GTTCTGATGCATCCATCTCA+AGG | - | chr5_1:42329520-42329539 | Msa0731480:CDS | 45.0% | |
| ATAAACCAGAAGAGATCCGC+TGG | - | chr5_1:42329619-42329638 | Msa0731480:intron | 45.0% | |
| TAAACCAGAAGAGATCCGCT+GGG | - | chr5_1:42329620-42329639 | Msa0731480:intron | 45.0% | |
| TTAGAAGATACCTGACGAGC+AGG | + | chr5_1:42329956-42329975 | None:intergenic | 45.0% | |
| CTTAGACATGCTAGAGGTTG+AGG | + | chr5_1:42329989-42330008 | None:intergenic | 45.0% | |
| TTCACCAGAACAGGAACAGA+TGG | - | chr5_1:42330276-42330295 | Msa0731480:intron | 45.0% | |
| ! | CTCGGGGATGAAATTCGTTT+TGG | + | chr5_1:42330634-42330653 | None:intergenic | 45.0% |
| CAAAACGAATTTCATCCCCG+AGG | - | chr5_1:42330632-42330651 | Msa0731480:intron | 45.0% | |
| CACCGAATGCAGATTCAAGA+TGG | + | chr5_1:42331121-42331140 | None:intergenic | 45.0% | |
| CATCTTGAATCTGCATTCGG+TGG | - | chr5_1:42331119-42331138 | Msa0731480:intron | 45.0% | |
| ACATCAGTTGGAACTGAGGA+TGG | + | chr5_1:42331239-42331258 | None:intergenic | 45.0% | |
| AGGAACATCAGTTGGAACTG+AGG | + | chr5_1:42331243-42331262 | None:intergenic | 45.0% | |
| TTGATCATGGTCCACTAAGC+CGG | + | chr5_1:42331348-42331367 | None:intergenic | 45.0% | |
| !! | TTAGATTAAAATTAAAATTT+AGG | + | chr5_1:42330853-42330872 | None:intergenic | 5.0% |
| TCCGGTGTCTGACATATGTC+CGG | - | chr5_1:42327509-42327528 | Msa0731480:CDS | 50.0% | |
| ACCGGACATATGTCAGACAC+CGG | + | chr5_1:42327513-42327532 | None:intergenic | 50.0% | |
| !! | TTTGCTGGTGTTGACCTGTC+CGG | - | chr5_1:42327570-42327589 | Msa0731480:CDS | 50.0% |
| ACTGACAAAGACACACGCAC+CGG | + | chr5_1:42327592-42327611 | None:intergenic | 50.0% | |
| GAGTGATGCAGTGGTGAAGA+AGG | + | chr5_1:42327630-42327649 | None:intergenic | 50.0% | |
| CGATGTGTTGAGTGATGCAG+TGG | + | chr5_1:42327639-42327658 | None:intergenic | 50.0% | |
| GATTTGGGTCCCACAACATC+AGG | - | chr5_1:42328231-42328250 | Msa0731480:intron | 50.0% | |
| TTTGGGTCCCACAACATCAG+GGG | - | chr5_1:42328233-42328252 | Msa0731480:intron | 50.0% | |
| !! | GAACAGAAGTACCGGTAACG+AGG | - | chr5_1:42328312-42328331 | Msa0731480:intron | 50.0% |
| ATCGTCTCAACCCTCGTTAC+CGG | + | chr5_1:42328326-42328345 | None:intergenic | 50.0% | |
| AACGTGTCCAGCACCGTAAA+TGG | + | chr5_1:42328785-42328804 | None:intergenic | 50.0% | |
| ! | CATGTATCGGTCTCGTATCG+GGG | + | chr5_1:42328819-42328838 | None:intergenic | 50.0% |
| TGGCACTAGCACATCTACAC+CGG | + | chr5_1:42328882-42328901 | None:intergenic | 50.0% | |
| GCCACTGTCTAGTAAGGCAT+CGG | - | chr5_1:42329491-42329510 | Msa0731480:CDS | 50.0% | |
| ACCGATGCCTTACTAGACAG+TGG | + | chr5_1:42329495-42329514 | None:intergenic | 50.0% | |
| ! | GGTATTTAAGGGCACGGAGT+TGG | - | chr5_1:42329541-42329560 | Msa0731480:exon | 50.0% |
| GTTGCTGAAGAAGCAGAGAC+CGG | - | chr5_1:42329872-42329891 | Msa0731480:intron | 50.0% | |
| TGTAATGAGACCTGCTCGTC+AGG | - | chr5_1:42329943-42329962 | Msa0731480:intron | 50.0% | |
| CAGACCATCTGTTCCTGTTC+TGG | + | chr5_1:42330283-42330302 | None:intergenic | 50.0% | |
| CAGAACAGGAACAGATGGTC+TGG | - | chr5_1:42330281-42330300 | Msa0731480:intron | 50.0% | |
| ! | GTCTGGCTGGTTGATTTCCA+GGG | - | chr5_1:42330298-42330317 | Msa0731480:intron | 50.0% |
| ! | AGAGCATTATCCTGAACGGC+TGG | - | chr5_1:42330378-42330397 | Msa0731480:intron | 50.0% |
| GAGCATTATCCTGAACGGCT+GGG | - | chr5_1:42330379-42330398 | Msa0731480:intron | 50.0% | |
| TCTGGACTTGCATGGCAATG+TGG | - | chr5_1:42330882-42330901 | Msa0731480:intron | 50.0% | |
| CTGGACTTGCATGGCAATGT+GGG | - | chr5_1:42330883-42330902 | Msa0731480:intron | 50.0% | |
| TGTTCGTCACCGAGTCAGAA+TGG | + | chr5_1:42331325-42331344 | None:intergenic | 50.0% | |
| GGTAACGAGGGTTGAGACGA+TGG | - | chr5_1:42328325-42328344 | Msa0731480:intron | 55.0% | |
| TATCGGTCTCGTATCGGGGT+TGG | + | chr5_1:42328815-42328834 | None:intergenic | 55.0% | |
| ACCTGCAGAACAGCAGGGAA+AGG | - | chr5_1:42329309-42329328 | Msa0731480:CDS | 55.0% | |
| ACCTTTCCCTGCTGTTCTGC+AGG | + | chr5_1:42329313-42329332 | None:intergenic | 55.0% | |
| ACAGGAACAGATGGTCTGGC+TGG | - | chr5_1:42330285-42330304 | Msa0731480:intron | 55.0% | |
| ! | GGTCTGGCTGGTTGATTTCC+AGG | - | chr5_1:42330297-42330316 | Msa0731480:intron | 55.0% |
| TTATCCTGAACGGCTGGGTC+TGG | - | chr5_1:42330384-42330403 | Msa0731480:intron | 55.0% | |
| !! | TCTGACTCGGTGACGAACAC+CGG | - | chr5_1:42331326-42331345 | Msa0731480:five_prime_UTR | 55.0% |
| CAAAGACACACGCACCGGAC+AGG | + | chr5_1:42327587-42327606 | None:intergenic | 60.0% | |
| CTCACCCAGCGGATCTCTTC+TGG | + | chr5_1:42329627-42329646 | None:intergenic | 60.0% | |
| GAAGAGATCCGCTGGGTGAG+TGG | - | chr5_1:42329627-42329646 | Msa0731480:intron | 60.0% | |
| ATTGCCAGACCCAGCCGTTC+AGG | + | chr5_1:42330391-42330410 | None:intergenic | 60.0% | |
| !! | GGTGACGAACACCGGCTTAG+TGG | - | chr5_1:42331334-42331353 | Msa0731480:five_prime_UTR | 60.0% |
| ACAGGCAGCCACTCACCCAG+CGG | + | chr5_1:42329638-42329657 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_1 | gene | 42327141 | 42331664 | 42327141 | ID=Msa0731480;Name=Msa0731480 |
| chr5_1 | mRNA | 42327141 | 42331664 | 42327141 | ID=Msa0731480-mRNA-1;Parent=Msa0731480;Name=Msa0731480-mRNA-1;_AED=0.12;_eAED=0.12;_QI=317|1|1|1|0.83|0.85|7|249|331 |
| chr5_1 | exon | 42327141 | 42327791 | 42327141 | ID=Msa0731480-mRNA-1:exon:12234;Parent=Msa0731480-mRNA-1 |
| chr5_1 | exon | 42328355 | 42328597 | 42328355 | ID=Msa0731480-mRNA-1:exon:12233;Parent=Msa0731480-mRNA-1 |
| chr5_1 | exon | 42328841 | 42328939 | 42328841 | ID=Msa0731480-mRNA-1:exon:12232;Parent=Msa0731480-mRNA-1 |
| chr5_1 | exon | 42329164 | 42329340 | 42329164 | ID=Msa0731480-mRNA-1:exon:12231;Parent=Msa0731480-mRNA-1 |
| chr5_1 | exon | 42329475 | 42329570 | 42329475 | ID=Msa0731480-mRNA-1:exon:12230;Parent=Msa0731480-mRNA-1 |
| chr5_1 | exon | 42331324 | 42331387 | 42331324 | ID=Msa0731480-mRNA-1:exon:12229;Parent=Msa0731480-mRNA-1 |
| chr5_1 | exon | 42331433 | 42331664 | 42331433 | ID=Msa0731480-mRNA-1:exon:12228;Parent=Msa0731480-mRNA-1 |
| chr5_1 | five_prime_UTR | 42331433 | 42331664 | 42331433 | ID=Msa0731480-mRNA-1:five_prime_utr;Parent=Msa0731480-mRNA-1 |
| chr5_1 | five_prime_UTR | 42331324 | 42331387 | 42331324 | ID=Msa0731480-mRNA-1:five_prime_utr;Parent=Msa0731480-mRNA-1 |
| chr5_1 | five_prime_UTR | 42329550 | 42329570 | 42329550 | ID=Msa0731480-mRNA-1:five_prime_utr;Parent=Msa0731480-mRNA-1 |
| chr5_1 | CDS | 42329475 | 42329549 | 42329475 | ID=Msa0731480-mRNA-1:cds;Parent=Msa0731480-mRNA-1 |
| chr5_1 | CDS | 42329164 | 42329340 | 42329164 | ID=Msa0731480-mRNA-1:cds;Parent=Msa0731480-mRNA-1 |
| chr5_1 | CDS | 42328841 | 42328939 | 42328841 | ID=Msa0731480-mRNA-1:cds;Parent=Msa0731480-mRNA-1 |
| chr5_1 | CDS | 42328355 | 42328597 | 42328355 | ID=Msa0731480-mRNA-1:cds;Parent=Msa0731480-mRNA-1 |
| chr5_1 | CDS | 42327390 | 42327791 | 42327390 | ID=Msa0731480-mRNA-1:cds;Parent=Msa0731480-mRNA-1 |
| chr5_1 | three_prime_UTR | 42327141 | 42327389 | 42327141 | ID=Msa0731480-mRNA-1:three_prime_utr;Parent=Msa0731480-mRNA-1 |
| Gene Sequence |
| Protein sequence |
