AlfalfaGEDB | Msa1122310

M. sativa cultivar zhongmu-4 / Msa1122310

KEGG: K11423|K11424|K15588
GO: -
PFAM: PF08387.13

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122310	ABD28647.1	88.419	449	45	3	1	447	20	463	0.0	803

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122310	sp\|Q9FM94\|FBD21_ARATH	29.975	397	205	16	90	432	2	379	1.20e-26	117

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122310	Q2HUI7	88.419	449	45	3	1	447	20	463	0.0	803

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0010490	Msa1122310	-0.824290	8.746688e-54	-8.615850e-47
Msa0010500	Msa1122310	-0.816099	6.583258e-52	-8.615850e-47
Msa0020390	Msa1122310	-0.819373	1.201882e-52	-8.615850e-47
Msa0033110	Msa1122310	-0.820740	5.845966e-53	-8.615850e-47
Msa0033260	Msa1122310	-0.819100	1.386346e-52	-8.615850e-47
Msa0036540	Msa1122310	-0.827679	1.369678e-54	-8.615850e-47
Msa0037540	Msa1122310	0.806204	9.216779e-50	-8.615850e-47
Msa0037590	Msa1122310	0.804430	2.168196e-49	-8.615850e-47
Msa0040690	Msa1122310	-0.805690	1.182033e-49	-8.615850e-47
Msa0045730	Msa1122310	-0.806541	7.823997e-50	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122310	MtrunA17_Chr7g0255101	88.419	449	45	3	1	447	20	463	0.0	803
Msa1122310	MtrunA17_Chr7g0256041	87.143	280	8	2	470	748	1	253	2.45e-162	473
Msa1122310	MtrunA17_Chr3g0138571	60.163	369	127	8	88	447	11	368	4.88e-139	414
Msa1122310	MtrunA17_Chr7g0256021	89.091	220	22	1	153	370	1	220	9.69e-136	400
Msa1122310	MtrunA17_Chr3g0138371	50.681	367	158	8	89	447	19	370	2.58e-106	330
Msa1122310	MtrunA17_Chr1g0166251	40.164	366	202	9	90	447	11	367	1.90e-73	243
Msa1122310	MtrunA17_Chr7g0235431	44.536	366	165	10	89	444	15	352	1.79e-72	240
Msa1122310	MtrunA17_Chr7g0236211	39.946	368	204	7	89	447	11	370	4.08e-70	234
Msa1122310	MtrunA17_Chr7g0227851	42.297	357	179	11	90	433	11	353	4.55e-70	234
Msa1122310	MtrunA17_Chr7g0262121	40.110	364	203	8	90	447	20	374	4.13e-69	232

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1122310	AT5G56370.1	29.975	397	205	16	90	432	2	379	1.22e-27	117
Msa1122310	AT5G56370.2	29.975	397	205	16	90	432	2	379	1.22e-27	117
Msa1122310	AT4G00160.1	30.653	398	215	18	88	432	14	403	2.16e-23	104
Msa1122310	AT5G38590.2	30.193	414	215	19	90	447	2	397	6.92e-23	102
Msa1122310	AT5G62970.1	27.500	440	226	13	90	447	2	430	7.50e-23	102
Msa1122310	AT4G10400.2	28.535	389	223	11	90	434	2	379	1.27e-22	101
Msa1122310	AT4G10400.3	28.535	389	223	11	90	434	2	379	1.27e-22	101
Msa1122310	AT4G10400.1	28.535	389	223	11	90	434	2	379	1.27e-22	101
Msa1122310	AT5G56560.2	28.777	417	218	19	89	447	4	399	1.35e-22	101
Msa1122310	AT3G52680.1	30.123	405	206	18	88	432	19	406	3.38e-22	100

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Find 169 sgRNAs with CRISPR-Local

Find 1160 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACAAGCTTAAAATCTTCCC+CGG	0.571507	7_3:+72717364	None:intergenic
AACATTCAAGATGGAATGAG+AGG	0.581599	7_3:+72722478	None:intergenic
AACGAGTACAGAAGCTTATC+CGG	0.385106	7_3:+72717395	None:intergenic
AACGCATGGAACTTCATTTA+AGG	0.189952	7_3:+72722275	None:intergenic
AACTTCAGAGGCATGAAATG+TGG	0.608556	7_3:-72721493	Msa1122310:CDS
AAGAGTTGTGAGAGCCAAAG+TGG	0.590522	7_3:+72722594	None:intergenic
AAGCGGAGCTGAGAACGGAG+AGG	0.730719	7_3:+72717525	None:intergenic
AAGCTTATCCGGGGAGAGAG+CGG	0.588410	7_3:+72717406	None:intergenic
AAGGATGCGGCGGAGTGGGA+TGG	0.534751	7_3:-72723493	None:intergenic
AAGGTTAATGAGTCTGGAAA+TGG	0.467741	7_3:+72722552	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
CTTTCTAGGTCAGTAAATTA+GGG	+	chr7_3:72714305-72714324	None:intergenic	30.0%
ACTTTCTAGGTCAGTAAATT+AGG	+	chr7_3:72714306-72714325	None:intergenic	30.0%
ATAAGAACATTGTAGAGAGT+TGG	+	chr7_3:72714512-72714531	None:intergenic	30.0%
TTGCTACTAAAAACGAAAGA+TGG	+	chr7_3:72715136-72715155	None:intergenic	30.0%
GATATTTGCTCTGATCAAAT+TGG	+	chr7_3:72715374-72715393	None:intergenic	30.0%
GTGTTTGTATCTGTGAAATT+GGG	+	chr7_3:72716060-72716079	None:intergenic	30.0%
TGTGTTTGTATCTGTGAAAT+TGG	+	chr7_3:72716061-72716080	None:intergenic	30.0%
AGTTTACATGTTGAACACTT+GGG	+	chr7_3:72716117-72716136	None:intergenic	30.0%
AAGTTTACATGTTGAACACT+TGG	+	chr7_3:72716118-72716137	None:intergenic	30.0%
TAACCTTGTCAAACTTTATG+TGG	+	chr7_3:72716538-72716557	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_3	gene	72713974	72723511	72713974	ID=Msa1122310;Name=Msa1122310
chr7_3	mRNA	72713974	72723511	72713974	ID=Msa1122310-mRNA-1;Parent=Msa1122310;Name=Msa1122310-mRNA-1;_AED=0.12;_eAED=0.12;_QI=0\|0.33\|0.23\|0.76\|1\|1\|13\|0\|750
chr7_3	exon	72723330	72723511	72723330	ID=Msa1122310-mRNA-1:exon:18969;Parent=Msa1122310-mRNA-1
chr7_3	exon	72722998	72723077	72722998	ID=Msa1122310-mRNA-1:exon:18968;Parent=Msa1122310-mRNA-1
chr7_3	exon	72722032	72722723	72722032	ID=Msa1122310-mRNA-1:exon:18967;Parent=Msa1122310-mRNA-1
chr7_3	exon	72721779	72721946	72721779	ID=Msa1122310-mRNA-1:exon:18966;Parent=Msa1122310-mRNA-1
chr7_3	exon	72721393	72721611	72721393	ID=Msa1122310-mRNA-1:exon:18965;Parent=Msa1122310-mRNA-1
chr7_3	exon	72717230	72717717	72717230	ID=Msa1122310-mRNA-1:exon:18964;Parent=Msa1122310-mRNA-1
chr7_3	exon	72716528	72716580	72716528	ID=Msa1122310-mRNA-1:exon:18963;Parent=Msa1122310-mRNA-1
chr7_3	exon	72716173	72716237	72716173	ID=Msa1122310-mRNA-1:exon:18962;Parent=Msa1122310-mRNA-1
chr7_3	exon	72716001	72716079	72716001	ID=Msa1122310-mRNA-1:exon:18961;Parent=Msa1122310-mRNA-1
chr7_3	exon	72714622	72714671	72714622	ID=Msa1122310-mRNA-1:exon:18960;Parent=Msa1122310-mRNA-1
chr7_3	exon	72714465	72714495	72714465	ID=Msa1122310-mRNA-1:exon:18959;Parent=Msa1122310-mRNA-1
chr7_3	exon	72714222	72714353	72714222	ID=Msa1122310-mRNA-1:exon:18958;Parent=Msa1122310-mRNA-1
chr7_3	exon	72713974	72713987	72713974	ID=Msa1122310-mRNA-1:exon:18957;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72723330	72723511	72723330	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72722998	72723077	72722998	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72722032	72722723	72722032	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72721779	72721946	72721779	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72721393	72721611	72721393	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72717230	72717717	72717230	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72716528	72716580	72716528	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72716173	72716237	72716173	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72716001	72716079	72716001	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72714622	72714671	72714622	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72714465	72714495	72714465	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72714222	72714353	72714222	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1
chr7_3	CDS	72713974	72713987	72713974	ID=Msa1122310-mRNA-1:cds;Parent=Msa1122310-mRNA-1

Gene Sequence

>Msa1122310

ATGCGGCGGAGTGGGATGGAGATGGACTCTTTTTTTGGGATGAATTTTAAGTACAGTGGGAGTGTCTCTTCTTCCACGAAAAGGAAGAGAAAATTTCCTTTTCCTTCGGATCGACAAAGGGAGTGTTATGAAGACTGTATCGTTTGCTTTAATGGAGACGACTTTGAGCTGTGTGATCGCATGGGATGCCCAAATCCTTACCACCCATCATGTGGTAAACGTGAGAAAGTCTTGGTTCAAGCCAAGGAAAACTTGAATTCTGGAGAAGACAAAATAAGTGCGCTGCCTGATTCACTTCTTTATTATATTCTTTCCTTTGTTTCGATTAAAGATGCCGCCACCACAAGTATCCTTTCAAAGAGGTGGAGACCACTTTGGCTCTCACAACTCTTCCTCAACTTGGATGACGAGCCATTTCCAGACTCATTAACCTTTTGCAATTTTGTCAACTCACTCATGGCCATGCGAGATATCACTCTACCCATCCTCTCATTCCATCTTGAATGTTGGAACTACTACGATTGCAGGGATATCTACGACGATATCTACAAATATGTTTATATAGCAATTCAAAGAGGAGTTAAGAACCTCAACATCGACTTCTCTCACTCACTTTTCTCCACAATGTTGTTGCCATCTTTCGTTTTTAGTAGCAAAACATTGTCAGTCCTTAAATTGAAACAAATAACCTTAAATGAAGTTCCATGCGTTAATCTTCCATCACTCAAAGCCCTTTACTTGGACGTTGTCACTTTCACATATTATGAATATATTTTGAAGCTTTTATCAGGATGTCCCATTCTACAAGATTTGGGAGCAAATAATTTACGAGTAGAGTTGCCTTATTCAGAAGGACGAGTTATAAGTTTGTCCAATTTGATCAGAGCAAATATCTGTGACATTCATATTGAGTTTGATTGGCTTCAAAACGTAGAGCGTCTGCGCGCAAGGGTGCTCATGGAGAAGCTTCCCTATACATTTGAACGCATTGCCATGTTTCACAATTTAACATACATGGAGCTTATCATCAATTGTCAACATTTTCCAAGGGCATGGATGTTTAATGGTATGATCAAGTTGCTTGAATATTGTCCCAAACTTCAAAGTCTTATCATTGATGAGGATTTTACATTCCACAAATTATGTGATGAAGATTGGGAGGAACCAAAAATTATTTTGAAATGCCTTTCATCTCATCTAAGAATATGCTCACTCAGAAACTTCAGAGGCATGAAATGTGGCCTTCACTTTGCAAAATATATTATGAAGAATTCAAGAGTACTTAGCGTCATGACCATTCAGATTCCCAATTTCACAGATACAAACACAAAGCATCGAATGCCTCACTCCCAACGAGAAAGAGAAGAAGAAAGAAGAAGAATAACCCGATCCTCCATTCCGATTCCGATGCCTTACCTCATCCGTGAAAACCTCTTCATCAGCAACATCATCGACGCTGCCGAAATTCTCCAAACCACCACCACCACCGTCCCCCACAACATCACCCACATCCTCTCCGTTCTCAGCTCCGCTTCCATCTCCTTCTTCTCCGAATGGCGTTCTTCCTTCTCCGTCCCTGTCAAGGAGATCTCCAAAGTTCATGTCTCCGACCTCCCTACGGCCGCCAAGTCCGCTCTCTCCCCGGATAAGCTTCTGTACTCGTTGGAATACGCCGGGGAAGATTTTAAGCTTGTTAGGATGGCTGTGCCGCTGAGGGATACTGAGAGTGAGAATTTGTTGGATTACCTCGAAGTTTGTGTTGATTTTATTGAGAGGAGTAGGAAAGAAGGTTCTGTTTTGGTTCATTGTTTCGCTGGTGTTTCTAGAAGTGCAGCGGTTATTACAGCCTATTTGATGAAAAGCGAAAATTTGTCACTAGAAGATGCCCTTGCATCGTTAAAGCAGAGCTGTGAATTTGTTTGCCCCAATGATGGCTTTCTAGAGCAGTTGAAAATGTTTGAGGAGATGGGTTTCAAGGTTGATCAATCTAGCCCTGTATACAAGCGCTTTCGTCTAAAAATACTAGTTTTGTTTAATGCCCTCCTTGTGGTGGTTGAGGGATGGGAGAAGGCTGAGAAGTTAATTGTTCCTACTAGTAGCTGTTCTGGTGAGAATCATTTCTCAGGGTCGAGGATAGACAGTTCTAAGCTTGGTGCAGATCCTGGCATGCCTGTTGAAACTTCTTCAGAGGTGGGAGAAGCTACTAAAGTAGAAAATAATCGTAGTCCTACATATCGCTGCAAACACAAATAA

Protein sequence

>Msa1122310

MRRSGMEMDSFFGMNFKYSGSVSSSTKRKRKFPFPSDRQRECYEDCIVCFNGDDFELCDRMGCPNPYHPSCGKREKVLVQAKENLNSGEDKISALPDSLLYYILSFVSIKDAATTSILSKRWRPLWLSQLFLNLDDEPFPDSLTFCNFVNSLMAMRDITLPILSFHLECWNYYDCRDIYDDIYKYVYIAIQRGVKNLNIDFSHSLFSTMLLPSFVFSSKTLSVLKLKQITLNEVPCVNLPSLKALYLDVVTFTYYEYILKLLSGCPILQDLGANNLRVELPYSEGRVISLSNLIRANICDIHIEFDWLQNVERLRARVLMEKLPYTFERIAMFHNLTYMELIINCQHFPRAWMFNGMIKLLEYCPKLQSLIIDEDFTFHKLCDEDWEEPKIILKCLSSHLRICSLRNFRGMKCGLHFAKYIMKNSRVLSVMTIQIPNFTDTNTKHRMPHSQREREEERRRITRSSIPIPMPYLIRENLFISNIIDAAEILQTTTTTVPHNITHILSVLSSASISFFSEWRSSFSVPVKEISKVHVSDLPTAAKSALSPDKLLYSLEYAGEDFKLVRMAVPLRDTESENLLDYLEVCVDFIERSRKEGSVLVHCFAGVSRSAAVITAYLMKSENLSLEDALASLKQSCEFVCPNDGFLEQLKMFEEMGFKVDQSSPVYKRFRLKILVLFNALLVVVEGWEKAEKLIVPTSSCSGENHFSGSRIDSSKLGADPGMPVETSSEVGEATKVENNRSPTYRCKHK*