AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1160740

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1160740 MtrunA17_Chr7g0256041 97.222 360 9 1 1 359 1 360 0.0 721
Msa1160740 MtrunA17_Chr7g0235331 61.682 107 41 0 249 355 19 125 3.31e-47 156
Msa1160740 MtrunA17_Chr4g0065631 45.161 93 50 1 95 186 82 174 6.91e-18 80.5
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1160740 AT4G18593.1 60.748 107 37 2 249 355 27 128 7.45e-45 151
Msa1160740 AT4G18593.2 60.748 107 37 2 249 355 27 128 7.45e-45 151
Msa1160740 AT3G23610.4 31.731 208 88 7 1 207 50 204 6.39e-22 92.8
Msa1160740 AT3G23610.2 31.551 187 78 6 1 186 50 187 6.06e-20 87.0
Msa1160740 AT3G23610.1 31.551 187 78 6 1 186 50 187 8.48e-20 86.7
Msa1160740 AT3G23610.5 31.551 187 78 6 1 186 50 187 8.84e-20 86.7
Msa1160740 AT3G23610.3 31.551 187 78 6 1 186 50 187 1.69e-19 86.7
Msa1160740 AT3G06110.2 35.052 97 60 2 91 186 67 161 4.04e-13 67.4
Msa1160740 AT3G06110.3 35.052 97 60 2 91 186 67 161 4.04e-13 67.4
Msa1160740 AT3G06110.1 35.484 93 58 2 96 186 59 151 1.55e-12 65.5

Find 145 sgRNAs with CRISPR-Local

Find 347 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CATATTTAGCTTATAGTTAA+TGG 0.127766 7_4:-50802962 Msa1160740:three_prime_UTR
GATTCATTAGACTTGTTAAA+AGG 0.260913 7_4:+50803933 None:intergenic
GATTATTATACAACTCTATT+AGG 0.268265 7_4:+50802811 None:intergenic
TGATGAGATATTATCCTATC+TGG 0.321745 7_4:-50802775 Msa1160740:three_prime_UTR
CCCGTTTGGGATACTTCAAT+TGG 0.323463 7_4:-50803501 Msa1160740:CDS
ATTCTAGTTACTTGTGTGTA+AGG 0.339464 7_4:-50802860 Msa1160740:three_prime_UTR
CCGTAGAGGCTCAATAAATA+TGG 0.345431 7_4:+50803899 None:intergenic
TGCTCATTGTGATGCCCGTT+TGG 0.347710 7_4:-50803515 Msa1160740:CDS
ACGAAGGATTCGAATTCAAT+TGG 0.357520 7_4:+50807521 None:intergenic
CTGCTCTAGAAAGCCATCAT+TGG 0.357821 7_4:+50806026 None:intergenic
GGACGGTGGTGCTGGTGGTT+TGG 0.359617 7_4:+50807426 None:intergenic
TGCTCTAGAAAGCCATCATT+GGG 0.368300 7_4:+50806027 None:intergenic
GTTGAAAATGTTTGAGGAGA+TGG 0.370927 7_4:-50805911 Msa1160740:CDS
GTTTCGCTGGTGTTTCTAGA+AGG 0.372534 7_4:-50807088 Msa1160740:intron
CTGCAGTGCAGCGGTTATTA+CGG 0.379568 7_4:-50806416 Msa1160740:intron
GGGGAGGGTGAGACATCCTT+TGG 0.382903 7_4:-50803981 Msa1160740:CDS
AGAACCTGAATGTTCTTGTT+AGG 0.383393 7_4:-50803049 Msa1160740:three_prime_UTR
AACGAGTACAGAAGCTTATC+CGG 0.385106 7_4:+50807254 None:intergenic
GAGGATGTGGGTGATGTTGT+GGG 0.385369 7_4:+50807403 None:intergenic
CCTATAGTTGAAAATGTTTG+AGG 0.385792 7_4:-50805917 Msa1160740:intron
CTCAACTGCAAATGAAGTTA+TGG 0.385930 7_4:-50803292 Msa1160740:three_prime_UTR
AGAGGATGTGGGTGATGTTG+TGG 0.387277 7_4:+50807402 None:intergenic
TCAGGTGAGAATCATTTCTC+AGG 0.388064 7_4:-50804173 Msa1160740:intron
AGACGAAAGCGCTTGTATAC+AGG 0.393097 7_4:+50805865 None:intergenic
CGAAGGATTCGAATTCAATT+GGG 0.399051 7_4:+50807522 None:intergenic
ACTTGTGTGTAAGGTTTGTT+TGG 0.399375 7_4:-50802851 Msa1160740:three_prime_UTR
TAGGAAAGAAGGTTCTGTTT+TGG 0.414854 7_4:-50807117 Msa1160740:CDS
CATATACTCATGTCTCGATA+AGG 0.420537 7_4:-50803373 Msa1160740:three_prime_UTR
ATCCGGGGAGAGAGCGGACT+TGG 0.421265 7_4:+50807271 None:intergenic
GTTTGAGGAGATGGGTTTCA+AGG 0.423864 7_4:-50805902 Msa1160740:CDS
TCTAAGCTTGGTGCAGATCC+TGG 0.425042 7_4:-50804134 Msa1160740:CDS
TTGAAAATGTTTGAGGAGAT+GGG 0.427324 7_4:-50805910 Msa1160740:CDS
TACTGAGAGTGAGAATTTGT+TGG 0.428765 7_4:-50807177 Msa1160740:CDS
ATGACCTAACAAGAACATTC+AGG 0.429426 7_4:+50803045 None:intergenic
AGCTGAGAACGGAGAGGATG+TGG 0.435012 7_4:+50807390 None:intergenic
AGCGAAAATTTGTCACTAGA+AGG 0.437993 7_4:-50806379 Msa1160740:intron
CTACTGCCAGTCTGCCAGAT+AGG 0.438130 7_4:+50802761 None:intergenic
CATGTCGTAGATCATATTCC+TGG 0.438405 7_4:-50804002 Msa1160740:CDS
AGGCTAAACAAATGCAGTTA+TGG 0.439147 7_4:-50803232 Msa1160740:three_prime_UTR
ATTGAGAGGAGTAGGAAAGA+AGG 0.439467 7_4:-50807128 Msa1160740:CDS
GCTGGTGGTTTGGAGAATTT+CGG 0.439769 7_4:+50807436 None:intergenic
TACAATGCAGCTGTGGAAGC+TGG 0.443294 7_4:-50803471 Msa1160740:CDS
GTAAGGTTTGTTTGGTGGCT+AGG 0.447993 7_4:-50802843 Msa1160740:three_prime_UTR
GCTCATTGTGATGCCCGTTT+GGG 0.448209 7_4:-50803514 Msa1160740:CDS
ACCTCTGAAGAAGTTTCAAC+AGG 0.461123 7_4:+50804107 None:intergenic
TCAAAATCAATGTATATTCA+AGG 0.464588 7_4:+50803090 None:intergenic
CCCAATTGAAGTATCCCAAA+CGG 0.465316 7_4:+50803500 None:intergenic
GAAGTTTCAACAGGCATGCC+AGG 0.467127 7_4:+50804116 None:intergenic
ATGAGGGAAGGCATCGGAAT+CGG 0.467534 7_4:+50807497 None:intergenic
CATACCTGCTCAAGATTTCG+AGG 0.473613 7_4:-50803252 Msa1160740:three_prime_UTR
TTCCTTCTCCGTCCCTGTCA+AGG 0.474413 7_4:-50807333 Msa1160740:CDS
ATATACTCATGTCTCGATAA+GGG 0.476211 7_4:-50803372 Msa1160740:three_prime_UTR
CCATATTTATTGAGCCTCTA+CGG 0.478853 7_4:-50803899 Msa1160740:CDS
GTCCAAGAACAATGGAGAAA+AGG 0.479438 7_4:+50803343 None:intergenic
AGGATGTGGGTGATGTTGTG+GGG 0.481858 7_4:+50807404 None:intergenic
CGCCAAGTCCGCTCTCTCCC+CGG 0.481905 7_4:-50807273 Msa1160740:CDS
TTGGGATACTTCAATTGGGC+AGG 0.489311 7_4:-50803496 Msa1160740:CDS
CCATCTCCTTCTTCTCCGAA+TGG 0.497479 7_4:-50807361 Msa1160740:CDS
AGAACGCCATTCGGAGAAGA+AGG 0.497667 7_4:+50807355 None:intergenic
GGAGAAGGAAGAACGCCATT+CGG 0.499383 7_4:+50807346 None:intergenic
AGCTCTGCTTTAACGATGCA+AGG 0.503140 7_4:+50806064 None:intergenic
AGGGTGAGACATCCTTTGGC+TGG 0.503541 7_4:-50803977 Msa1160740:CDS
ACGAGTACAGAAGCTTATCC+GGG 0.504528 7_4:+50807255 None:intergenic
TGAAGAGGTTCTCACGGATG+AGG 0.504622 7_4:+50807480 None:intergenic
GGAGATCTCCTTGACAGGGA+CGG 0.507079 7_4:+50807325 None:intergenic
TGTACTCGTTGGAATACGCC+GGG 0.513421 7_4:-50807241 Msa1160740:CDS
GGCTGGCACAAGCGGAAAAG+TGG 0.513620 7_4:-50803960 Msa1160740:CDS
CAATGATGGCTTTCTAGAGC+AGG 0.514418 7_4:-50806025 Msa1160740:intron
TGTGTGTAAGGTTTGTTTGG+TGG 0.515460 7_4:-50802848 Msa1160740:three_prime_UTR
GAGCGGACTTGGCGGCCGTA+GGG 0.515523 7_4:+50807282 None:intergenic
GAGGTCGGAGACATGAACTT+TGG 0.517899 7_4:+50807304 None:intergenic
CCAATTGAAGTATCCCAAAC+GGG 0.519074 7_4:+50803501 None:intergenic
GAATTTGTTTGCCCCAATGA+TGG 0.519376 7_4:-50806039 Msa1160740:CDS
TGTTGAAACTTCTTCAGAGG+TGG 0.520731 7_4:-50804105 Msa1160740:CDS
CTCCTTGACAGGGACGGAGA+AGG 0.523200 7_4:+50807331 None:intergenic
CCGTTTGGGATACTTCAATT+GGG 0.524019 7_4:-50803500 Msa1160740:CDS
TAAAATCAACACAAACTTCG+AGG 0.525001 7_4:+50807150 None:intergenic
GTTGTATAATAATCAGATAG+AGG 0.525159 7_4:-50802802 Msa1160740:three_prime_UTR
ACTTTGGAGATCTCCTTGAC+AGG 0.526020 7_4:+50807320 None:intergenic
TTTCCGCTTGTGCCAGCCAA+AGG 0.528514 7_4:+50803965 None:intergenic
AGTTGAGGAAGGCGCGTTGG+AGG 0.531978 7_4:-50803551 Msa1160740:CDS
CATCCTTTGGCTGGCACAAG+CGG 0.533168 7_4:-50803968 Msa1160740:CDS
CTCAGTTGAGGAAGGCGCGT+TGG 0.536953 7_4:-50803554 Msa1160740:intron
CAGGTGAGAATCATTTCTCA+GGG 0.537229 7_4:-50804172 Msa1160740:CDS
CGGGGAGAGAGCGGACTTGG+CGG 0.539141 7_4:+50807274 None:intergenic
TATTATCCTATCTGGCAGAC+TGG 0.540241 7_4:-50802767 Msa1160740:three_prime_UTR
ATTCGAATTCAATTGGGGTG+AGG 0.545404 7_4:+50807528 None:intergenic
AAGGATGTCTCACCCTCCCC+AGG 0.546506 7_4:+50803984 None:intergenic
AGGATAGACAGTTCTAAGCT+TGG 0.546865 7_4:-50804146 Msa1160740:CDS
ATGTCGTAGATCATATTCCT+GGG 0.548003 7_4:-50804001 Msa1160740:CDS
TAGTCAAGTGTGCTTTGTCA+TGG 0.548729 7_4:-50802741 None:intergenic
TCATTTGCAGTTGAGCAGCT+AGG 0.551230 7_4:+50803300 None:intergenic
GACGAAAGCGCTTGTATACA+GGG 0.552682 7_4:+50805866 None:intergenic
CAAATGCAGTTATGGTTGAG+AGG 0.555563 7_4:-50803224 Msa1160740:three_prime_UTR
TTAGCCTCGAAATCTTGAGC+AGG 0.555819 7_4:+50803248 None:intergenic
GAAGAGGTTCTCACGGATGA+GGG 0.560221 7_4:+50807481 None:intergenic
CCTCTACGGTGGATGAAAGA+TGG 0.560281 7_4:-50803885 Msa1160740:intron
GGATGTGGGTGATGTTGTGG+GGG 0.561150 7_4:+50807405 None:intergenic
GCCTGTTGAAACTTCTTCAG+AGG 0.563895 7_4:-50804108 Msa1160740:CDS
GTTGAAACTTCTTCAGAGGT+GGG 0.564173 7_4:-50804104 Msa1160740:CDS
GGATATCAAGTTGTCTCTGT+AGG 0.565292 7_4:-50803004 Msa1160740:three_prime_UTR
TCTTGTCACTCAGTTGAGGA+AGG 0.570447 7_4:-50803562 Msa1160740:intron
CTTTGGAGATCTCCTTGACA+GGG 0.570568 7_4:+50807321 None:intergenic
AACAAGCTTAAAATCTTCCC+CGG 0.571507 7_4:+50807223 None:intergenic
GGATAAGCTTCTGTACTCGT+TGG 0.571948 7_4:-50807252 Msa1160740:CDS
TTAACTATAAGCTAAATATG+TGG 0.572608 7_4:+50802965 None:intergenic
GTTGAGGAAGGCGCGTTGGA+GGG 0.574211 7_4:-50803550 Msa1160740:CDS
CACTTCTTACAGCGATATGT+AGG 0.575104 7_4:+50804050 None:intergenic
TTAGGATGGCTGTGCCGCTG+AGG 0.575177 7_4:-50807202 Msa1160740:CDS
GATGGAAGCGGAGCTGAGAA+CGG 0.575842 7_4:+50807379 None:intergenic
GGAGAAGAAGGAGATGGAAG+CGG 0.581126 7_4:+50807367 None:intergenic
GATAAGTGTCGATTTCAACT+TGG 0.581969 7_4:+50803149 None:intergenic
ACATGAGTATATGTATAAAG+TGG 0.584720 7_4:+50803383 None:intergenic
TGGTGCAACAAGACTTACAC+GGG 0.587642 7_4:+50803403 None:intergenic
AAGCTTATCCGGGGAGAGAG+CGG 0.588410 7_4:+50807265 None:intergenic
AGAATCATTTCTCAGGGTCA+AGG 0.592213 7_4:-50804166 Msa1160740:CDS
CCATTCGGAGAAGAAGGAGA+TGG 0.592616 7_4:+50807361 None:intergenic
CGATGATGTTGCTGATGAAG+AGG 0.593102 7_4:+50807465 None:intergenic
CGGACTTGGCGGCCGTAGGG+AGG 0.598044 7_4:+50807285 None:intergenic
TCACGGATGAGGGAAGGCAT+CGG 0.600239 7_4:+50807491 None:intergenic
CATTATTAGTCGTTAAATCG+TGG 0.600511 7_4:-50803025 Msa1160740:three_prime_UTR
CGTAGATCATATTCCTGGGG+AGG 0.603657 7_4:-50803997 Msa1160740:CDS
CAAGAACAATGGAGAAAAGG+TGG 0.604929 7_4:+50803346 None:intergenic
AGGTTCTCACGGATGAGGGA+AGG 0.605051 7_4:+50807485 None:intergenic
AGAGCGGACTTGGCGGCCGT+AGG 0.605058 7_4:+50807281 None:intergenic
GCTGAGAACGGAGAGGATGT+GGG 0.607618 7_4:+50807391 None:intergenic
TCATGTCTCCGACCTCCCTA+CGG 0.610980 7_4:-50807297 Msa1160740:CDS
ACGGGCATCACAATGAGCAC+AGG 0.619374 7_4:+50803519 None:intergenic
CCATCTTTCATCCACCGTAG+AGG 0.619573 7_4:+50803885 None:intergenic
GAATGCAAGTCCAAGAACAA+TGG 0.620741 7_4:+50803335 None:intergenic
GTAGATCATATTCCTGGGGA+GGG 0.623117 7_4:-50803996 Msa1160740:CDS
TAGGATGGCTGTGCCGCTGA+GGG 0.623217 7_4:-50807201 Msa1160740:CDS
AGGCATCGGAATCGGAACGA+AGG 0.638671 7_4:+50807505 None:intergenic
TGCTGATGAAGAGGTTCTCA+CGG 0.640204 7_4:+50807474 None:intergenic
GAAGGATTCGAATTCAATTG+GGG 0.642867 7_4:+50807523 None:intergenic
GCTCTGCTTTAACGATGCAA+GGG 0.645098 7_4:+50806065 None:intergenic
GTGGTGCAACAAGACTTACA+CGG 0.648625 7_4:+50803402 None:intergenic
GCAGGCATACAATGCAGCTG+TGG 0.649537 7_4:-50803478 Msa1160740:CDS
TATTTATTGAGCCTCTACGG+TGG 0.683041 7_4:-50803896 Msa1160740:CDS
CGAGTACAGAAGCTTATCCG+GGG 0.705162 7_4:+50807256 None:intergenic
TGTCGTAGATCATATTCCTG+GGG 0.712970 7_4:-50804000 Msa1160740:CDS
GCTCTAGAAAGCCATCATTG+GGG 0.722213 7_4:+50806028 None:intergenic
AAGCGGAGCTGAGAACGGAG+AGG 0.730719 7_4:+50807384 None:intergenic
GTACTCGTTGGAATACGCCG+GGG 0.747350 7_4:-50807240 Msa1160740:CDS
GGTGCAACAAGACTTACACG+GGG 0.818206 7_4:+50803404 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TTATAAACAAAAAAGTTCTT+CGG + chr7_4:50804095-50804114 None:intergenic 15.0%
!!! TTGTTTTTTTCTTCTTTTTT+CGG - chr7_4:50804162-50804181 Msa1160740:CDS 15.0%
!! AAGAAAAAAAAACTTATGAA+AGG + chr7_4:50805188-50805207 None:intergenic 15.0%
!!! GTACAATTAATCATTTTTTA+AGG + chr7_4:50805482-50805501 None:intergenic 15.0%
!!! ATTTTAAAACGAATTAATGT+AGG - chr7_4:50805564-50805583 Msa1160740:intron 15.0%
!!! ACTTTTATTCATAAATACAA+AGG + chr7_4:50805911-50805930 None:intergenic 15.0%
!! ATTCAAAATATTATAGAAGA+CGG + chr7_4:50806533-50806552 None:intergenic 15.0%
!! AAATAAGTTGTTTATCTGAA+AGG - chr7_4:50803798-50803817 Msa1160740:intron 20.0%
!! TGTGAAAAAAATAAGAAGAA+AGG + chr7_4:50803989-50804008 None:intergenic 20.0%
!! ACAAATGACATAAAAGTAAA+AGG + chr7_4:50804560-50804579 None:intergenic 20.0%
!! AAGTTGACATAAAATAACAT+AGG + chr7_4:50804619-50804638 None:intergenic 20.0%
!!! ACTTTCAGAAAACTTTTAAA+AGG + chr7_4:50804711-50804730 None:intergenic 20.0%
!!! TTTAAAAGTTTTCTGAAAGT+AGG - chr7_4:50804711-50804730 Msa1160740:intron 20.0%
!!! TTTTAGTGTTAGTGAAAAAT+AGG - chr7_4:50804984-50805003 Msa1160740:intron 20.0%
!! AAAAAAAAACTTATGAAAGG+TGG + chr7_4:50805185-50805204 None:intergenic 20.0%
!!! GTTTTTTTTTCTTCTTTCAT+TGG - chr7_4:50805195-50805214 Msa1160740:intron 20.0%
!!! CATTTTTTAAGGTTTTCTTT+GGG + chr7_4:50805471-50805490 None:intergenic 20.0%
!!! TCATTTTTTAAGGTTTTCTT+TGG + chr7_4:50805472-50805491 None:intergenic 20.0%
!!! CTATTAATACATTTTAGTCA+AGG + chr7_4:50805529-50805548 None:intergenic 20.0%
!!! CGTTTTAAAATTAACTACAT+TGG + chr7_4:50805555-50805574 None:intergenic 20.0%
!! TGATAATTATTTGAATCCTT+TGG - chr7_4:50805851-50805870 Msa1160740:intron 20.0%
!! TCAAAATCAATGTATATTCA+AGG + chr7_4:50807186-50807205 None:intergenic 20.0%
!!! ATTTTGATTCAAAAGCAATT+GGG - chr7_4:50807199-50807218 Msa1160740:CDS 20.0%
!! TTAACTATAAGCTAAATATG+TGG + chr7_4:50807311-50807330 None:intergenic 20.0%
!!! CATATTTAGCTTATAGTTAA+TGG - chr7_4:50807311-50807330 Msa1160740:CDS 20.0%
!! GATTATTATACAACTCTATT+AGG + chr7_4:50807465-50807484 None:intergenic 20.0%
!!! TTTGTGTTGATTTTATTGAG+AGG - chr7_4:50803131-50803150 Msa1160740:three_prime_UTR 25.0%
! TAGGTTTAGTAAAACTGTTT+GGG + chr7_4:50803576-50803595 None:intergenic 25.0%
! ATAGGTTTAGTAAAACTGTT+TGG + chr7_4:50803577-50803596 None:intergenic 25.0%
!!! TAATCAATAAGCTGTTTTCA+AGG + chr7_4:50803687-50803706 None:intergenic 25.0%
! AGAAATAGCTAATTCATAAG+TGG - chr7_4:50803744-50803763 Msa1160740:intron 25.0%
! GAAATAGCTAATTCATAAGT+GGG - chr7_4:50803745-50803764 Msa1160740:intron 25.0%
!! ATTTTGCAGCTTATATCATA+AGG + chr7_4:50803782-50803801 None:intergenic 25.0%
!!! ATTTTCGCTTTTCATCAAAT+AGG + chr7_4:50803883-50803902 None:intergenic 25.0%
!! ATACTTTGTTTAAAGTCTTC+AGG - chr7_4:50803937-50803956 Msa1160740:CDS 25.0%
!! TACTTTGTTTAAAGTCTTCA+GGG - chr7_4:50803938-50803957 Msa1160740:CDS 25.0%
!! TTAAAGTTATGATAGTGCTT+AGG - chr7_4:50804035-50804054 Msa1160740:CDS 25.0%
!! ATACGAGTATCTTTTCAAAA+TGG - chr7_4:50804068-50804087 Msa1160740:CDS 25.0%
!! TACGAGTATCTTTTCAAAAT+GGG - chr7_4:50804069-50804088 Msa1160740:CDS 25.0%
! AATGTTTATGTTTGACAATG+AGG - chr7_4:50804303-50804322 Msa1160740:intron 25.0%
! TATATGATAATATGAGCATG+AGG + chr7_4:50804484-50804503 None:intergenic 25.0%
! TCATGCTCATATTATCATAT+AGG - chr7_4:50804483-50804502 Msa1160740:intron 25.0%
! AAATAACATAGGAAGAGAAA+AGG + chr7_4:50804608-50804627 None:intergenic 25.0%
! AAAAAACACATTGTCTGAAA+AGG + chr7_4:50804658-50804677 None:intergenic 25.0%
!!! CAGAAAACTTTTAAAAGGAA+TGG + chr7_4:50804706-50804725 None:intergenic 25.0%
! CAAAAGATAAATTTGTGCTT+TGG - chr7_4:50805028-50805047 Msa1160740:intron 25.0%
!! TTTTCTTAGTTTCCCAATAT+CGG + chr7_4:50805232-50805251 None:intergenic 25.0%
! GAAACTAAGAAAATGCATTA+GGG - chr7_4:50805239-50805258 Msa1160740:intron 25.0%
!!! TTTTTGGGGAGTATTTTTTA+AGG + chr7_4:50805376-50805395 None:intergenic 25.0%
!!! TCAAGGAAGATTATTTTATC+TGG + chr7_4:50805512-50805531 None:intergenic 25.0%
! AAAACGAATTAATGTAGGTT+TGG - chr7_4:50805569-50805588 Msa1160740:intron 25.0%
!!! AATGTCCACTTTAGAATATT+CGG + chr7_4:50805674-50805693 None:intergenic 25.0%
! TGGTAGTATCAAATTAAATC+AGG - chr7_4:50805707-50805726 Msa1160740:intron 25.0%
!! TAATTTGTAGCAATAGATTC+CGG - chr7_4:50805881-50805900 Msa1160740:CDS 25.0%
!!! GATTCATTAGACTTGTTAAA+AGG + chr7_4:50806343-50806362 None:intergenic 25.0%
! AAGTCAAATTCAATTCTTGT+TGG + chr7_4:50806456-50806475 None:intergenic 25.0%
!! GCATATTACCAAAATTTTCT+TGG - chr7_4:50806560-50806579 Msa1160740:intron 25.0%
!! TTAATGCTCCAAGAAAATTT+TGG + chr7_4:50806571-50806590 None:intergenic 25.0%
! CGCATAAATATGCATAAAAA+TGG - chr7_4:50806665-50806684 Msa1160740:intron 25.0%
! ACATGAGTATATGTATAAAG+TGG + chr7_4:50806893-50806912 None:intergenic 25.0%
!! CTTCTTCCAAAATGATTTTT+AGG - chr7_4:50807097-50807116 Msa1160740:CDS 25.0%
!!! GATTTTGATTCAAAAGCAAT+TGG - chr7_4:50807198-50807217 Msa1160740:CDS 25.0%
!!! TTACTAGTTTTCTTCATGTT+GGG + chr7_4:50807355-50807374 None:intergenic 25.0%
!!! ATTACTAGTTTTCTTCATGT+TGG + chr7_4:50807356-50807375 None:intergenic 25.0%
! GTTGTATAATAATCAGATAG+AGG - chr7_4:50807471-50807490 Msa1160740:CDS 25.0%
!!! AGATTTTAAGCTTGTTAGGA+TGG - chr7_4:50803057-50803076 Msa1160740:three_prime_UTR 30.0%
TAAAATCAACACAAACTTCG+AGG + chr7_4:50803126-50803145 None:intergenic 30.0%
! TTGATTTTATTGAGAGGAGT+AGG - chr7_4:50803137-50803156 Msa1160740:three_prime_UTR 30.0%
ATAAGCATGCTTATGACATA+TGG - chr7_4:50803326-50803345 Msa1160740:three_prime_UTR 30.0%
ATAAGCTGTATATCCAAACA+AGG + chr7_4:50803352-50803371 None:intergenic 30.0%
AAAAGCCCTTATCACTATAA+GGG - chr7_4:50803384-50803403 Msa1160740:three_prime_UTR 30.0%
ATAAGCCCTTATAGTGATAA+GGG + chr7_4:50803392-50803411 None:intergenic 30.0%
! CTTATGAATATGGACTTGTT+TGG + chr7_4:50803628-50803647 None:intergenic 30.0%
CTGAAAACAGCTTATGAATA+TGG + chr7_4:50803638-50803657 None:intergenic 30.0%
! CCTCAAACATTTTCAACTAT+AGG + chr7_4:50804359-50804378 None:intergenic 30.0%
CCTATAGTTGAAAATGTTTG+AGG - chr7_4:50804356-50804375 Msa1160740:intron 30.0%
TTGAAAATGTTTGAGGAGAT+GGG - chr7_4:50804363-50804382 Msa1160740:intron 30.0%
TCGTCTAAAAATACTAGGTA+TGG - chr7_4:50804425-50804444 Msa1160740:intron 30.0%
TGCTCATATTATCATATAGG+TGG - chr7_4:50804486-50804505 Msa1160740:intron 30.0%
! AGTGACAACTTGTATTGTTT+TGG - chr7_4:50804514-50804533 Msa1160740:intron 30.0%
GACAACATTAGTACAGATTT+GGG + chr7_4:50804768-50804787 None:intergenic 30.0%
TGACAACATTAGTACAGATT+TGG + chr7_4:50804769-50804788 None:intergenic 30.0%
GTACTAATGTTGTCAAATAG+TGG - chr7_4:50804774-50804793 Msa1160740:intron 30.0%
!! TGTTTAAGAGCTAGCTTTAA+CGG - chr7_4:50804859-50804878 Msa1160740:intron 30.0%
TAGTGTTAGTGAAAAATAGG+TGG - chr7_4:50804987-50805006 Msa1160740:intron 30.0%
AGTGTTAGTGAAAAATAGGT+GGG - chr7_4:50804988-50805007 Msa1160740:intron 30.0%
!!! AGTTTTGAGGATTGAAGAAT+GGG - chr7_4:50805130-50805149 Msa1160740:intron 30.0%
GGAAACTAAGAAAATGCATT+AGG - chr7_4:50805238-50805257 Msa1160740:intron 30.0%
GGAAACTAAGAAAATAGCTT+TGG - chr7_4:50805260-50805279 Msa1160740:intron 30.0%
!! AACTAAGAAAATAGCTTTGG+AGG - chr7_4:50805263-50805282 Msa1160740:intron 30.0%
TTGGTTGAGATACAAAATAG+TGG - chr7_4:50805588-50805607 Msa1160740:intron 30.0%
TACAAATTAGACACTACCAA+AGG + chr7_4:50805870-50805889 None:intergenic 30.0%
ATGAATAAAAGTCCTTACCA+TGG - chr7_4:50805919-50805938 Msa1160740:intron 30.0%
AGTTTGATATACAACAACCA+TGG + chr7_4:50805939-50805958 None:intergenic 30.0%
ATAGTACACAATCATCACAT+TGG + chr7_4:50806015-50806034 None:intergenic 30.0%
AATGTGATGATTGTGTACTA+TGG - chr7_4:50806014-50806033 Msa1160740:intron 30.0%
ATGTGATGATTGTGTACTAT+GGG - chr7_4:50806015-50806034 Msa1160740:intron 30.0%
CTAGTAATTTATGTCATCTG+AGG - chr7_4:50806056-50806075 Msa1160740:CDS 30.0%
!!! GAAATATCTCTCCTTTTTTC+AGG - chr7_4:50806082-50806101 Msa1160740:intron 30.0%
AATGATTCTCACCTGAAAAA+AGG + chr7_4:50806096-50806115 None:intergenic 30.0%
! AGTGGATTCCTCTATATATA+AGG - chr7_4:50806620-50806639 Msa1160740:intron 30.0%
CCAAAGAACCTTATATATAG+AGG + chr7_4:50806631-50806650 None:intergenic 30.0%
CCTCTATATATAAGGTTCTT+TGG - chr7_4:50806628-50806647 Msa1160740:intron 30.0%
TTTATGCATATTTATGCGCA+CGG + chr7_4:50806663-50806682 None:intergenic 30.0%
! CTTTTCAACTACACAAAAGT+CGG - chr7_4:50806835-50806854 Msa1160740:intron 30.0%
! TTTTCAACTACACAAAAGTC+GGG - chr7_4:50806836-50806855 Msa1160740:intron 30.0%
ATATACTCATGTCTCGATAA+GGG - chr7_4:50806901-50806920 Msa1160740:intron 30.0%
! GGAGATCCTAAAAATCATTT+TGG + chr7_4:50807106-50807125 None:intergenic 30.0%
CATTATTAGTCGTTAAATCG+TGG - chr7_4:50807248-50807267 Msa1160740:CDS 30.0%
! ATTCTAGTTACTTGTGTGTA+AGG - chr7_4:50807413-50807432 Msa1160740:CDS 30.0%
TGATGAGATATTATCCTATC+TGG - chr7_4:50807498-50807517 Msa1160740:exon 30.0%
GAAGGATTCGAATTCAATTG+GGG + chr7_4:50802753-50802772 None:intergenic 35.0%
CGAAGGATTCGAATTCAATT+GGG + chr7_4:50802754-50802773 None:intergenic 35.0%
ACGAAGGATTCGAATTCAAT+TGG + chr7_4:50802755-50802774 None:intergenic 35.0%
AACAAGCTTAAAATCTTCCC+CGG + chr7_4:50803053-50803072 None:intergenic 35.0%
!! GGGAAGATTTTAAGCTTGTT+AGG - chr7_4:50803053-50803072 Msa1160740:three_prime_UTR 35.0%
TACTGAGAGTGAGAATTTGT+TGG - chr7_4:50803096-50803115 Msa1160740:three_prime_UTR 35.0%
! TAGGAAAGAAGGTTCTGTTT+TGG - chr7_4:50803156-50803175 Msa1160740:three_prime_UTR 35.0%
!! TTATGACATATGGCCTTGTT+TGG - chr7_4:50803336-50803355 Msa1160740:three_prime_UTR 35.0%
GAAAAGCCCTTATCACTATA+AGG - chr7_4:50803383-50803402 Msa1160740:three_prime_UTR 35.0%
CATAAGCCCTTATAGTGATA+AGG + chr7_4:50803393-50803412 None:intergenic 35.0%
!! GCTGTTTTCGTAAGCTATAT+TGG - chr7_4:50803485-50803504 Msa1160740:CDS 35.0%
CTGAGCTTATCTACTAACAT+AGG + chr7_4:50803595-50803614 None:intergenic 35.0%
TTATTTCCATAAGCTCTCCA+GGG - chr7_4:50803659-50803678 Msa1160740:intron 35.0%
AGCGAAAATTTGTCACTAGA+AGG - chr7_4:50803894-50803913 Msa1160740:CDS 35.0%
GTTGAAAATGTTTGAGGAGA+TGG - chr7_4:50804362-50804381 Msa1160740:intron 35.0%
CGCTTTCGTCTAAAAATACT+AGG - chr7_4:50804420-50804439 Msa1160740:intron 35.0%
!!! GACAACTTGTATTGTTTTGG+TGG - chr7_4:50804517-50804536 Msa1160740:intron 35.0%
CATTAGTACAGATTTGGGAA+GGG + chr7_4:50804763-50804782 None:intergenic 35.0%
ACATTAGTACAGATTTGGGA+AGG + chr7_4:50804764-50804783 None:intergenic 35.0%
TGTGCTAAATTAGCGTATTG+AGG + chr7_4:50804835-50804854 None:intergenic 35.0%
GTGTTAGTGAAAAATAGGTG+GGG - chr7_4:50804989-50805008 Msa1160740:intron 35.0%
!!! GAGTTTTGAGGATTGAAGAA+TGG - chr7_4:50805129-50805148 Msa1160740:intron 35.0%
AGGATTGAAGAATGGGAAAA+GGG - chr7_4:50805137-50805156 Msa1160740:intron 35.0%
!! TAAGGTTTTCTTTGGGAGTT+AGG + chr7_4:50805464-50805483 None:intergenic 35.0%
! TCATAAATACAAAGGCATGC+CGG + chr7_4:50805903-50805922 None:intergenic 35.0%
GATATACAACAACCATGGTA+AGG + chr7_4:50805934-50805953 None:intergenic 35.0%
ATGTCGTAGATCATATTCCT+GGG - chr7_4:50806272-50806291 Msa1160740:intron 35.0%
CCATATTTATTGAGCCTCTA+CGG - chr7_4:50806374-50806393 Msa1160740:intron 35.0%
!! ACTGAATAATGAGAGCATCT+TGG + chr7_4:50806495-50806514 None:intergenic 35.0%
TACTTCCTACATTGTTTGAG+TGG - chr7_4:50806602-50806621 Msa1160740:intron 35.0%
! CTTTTGTGTAGTTGAAAAGC+TGG + chr7_4:50806834-50806853 None:intergenic 35.0%
CATATACTCATGTCTCGATA+AGG - chr7_4:50806900-50806919 Msa1160740:intron 35.0%
CTCAACTGCAAATGAAGTTA+TGG - chr7_4:50806981-50807000 Msa1160740:intron 35.0%
AGGCTAAACAAATGCAGTTA+TGG - chr7_4:50807041-50807060 Msa1160740:intron 35.0%
!! GATAAGTGTCGATTTCAACT+TGG + chr7_4:50807127-50807146 None:intergenic 35.0%
AGAACCTGAATGTTCTTGTT+AGG - chr7_4:50807224-50807243 Msa1160740:CDS 35.0%
ATGACCTAACAAGAACATTC+AGG + chr7_4:50807231-50807250 None:intergenic 35.0%
! ACTTGTGTGTAAGGTTTGTT+TGG - chr7_4:50807422-50807441 Msa1160740:CDS 35.0%
ATTCGAATTCAATTGGGGTG+AGG + chr7_4:50802748-50802767 None:intergenic 40.0%
AACGAGTACAGAAGCTTATC+CGG + chr7_4:50803022-50803041 None:intergenic 40.0%
ATTGAGAGGAGTAGGAAAGA+AGG - chr7_4:50803145-50803164 Msa1160740:three_prime_UTR 40.0%
!!! GTTTTGGTTCATTGTTTCGC+TGG - chr7_4:50803172-50803191 Msa1160740:three_prime_UTR 40.0%
CTTATTTCCATAAGCTCTCC+AGG - chr7_4:50803658-50803677 Msa1160740:intron 40.0%
!! GAAAGGAGTGTTAGTCTTAC+AGG - chr7_4:50803815-50803834 Msa1160740:intron 40.0%
! GAATTTGTTTGCCCCAATGA+TGG - chr7_4:50804234-50804253 Msa1160740:intron 40.0%
!! TGCTCTAGAAAGCCATCATT+GGG + chr7_4:50804249-50804268 None:intergenic 40.0%
AGAGCAGGTGTGTATTATGA+AGG - chr7_4:50804263-50804282 Msa1160740:intron 40.0%
GTAGGAGTCATGTTAGATGT+TGG - chr7_4:50804729-50804748 Msa1160740:intron 40.0%
!! GAAAACACTGATTTGTACGC+AGG - chr7_4:50804959-50804978 Msa1160740:intron 40.0%
GAGGATTGAAGAATGGGAAA+AGG - chr7_4:50805136-50805155 Msa1160740:intron 40.0%
TTGAAGAATGGGAAAAGGGA+AGG - chr7_4:50805141-50805160 Msa1160740:intron 40.0%
GACTAAAACCCTCCGATATT+GGG - chr7_4:50805217-50805236 Msa1160740:intron 40.0%
CTTAGTTTCCCAATATCGGA+GGG + chr7_4:50805228-50805247 None:intergenic 40.0%
TCTTAGTTTCCCAATATCGG+AGG + chr7_4:50805229-50805248 None:intergenic 40.0%
!!! CGGAATCTCTCACTTTTTTG+GGG + chr7_4:50805390-50805409 None:intergenic 40.0%
!!! GCGGAATCTCTCACTTTTTT+GGG + chr7_4:50805391-50805410 None:intergenic 40.0%
!!! AGCGGAATCTCTCACTTTTT+TGG + chr7_4:50805392-50805411 None:intergenic 40.0%
TGGGAGGAATGAAAAGTTAG+CGG + chr7_4:50805410-50805429 None:intergenic 40.0%
!! GTTTTCTTTGGGAGTTAGGA+GGG + chr7_4:50805460-50805479 None:intergenic 40.0%
! GACAGCCGAATATTCTAAAG+TGG - chr7_4:50805666-50805685 Msa1160740:intron 40.0%
GGACATTTAGTATGAGATGC+TGG - chr7_4:50805687-50805706 Msa1160740:intron 40.0%
!! GGAGGGCATTAAACAAAACT+GGG + chr7_4:50805784-50805803 None:intergenic 40.0%
!! AGGAGGGCATTAAACAAAAC+TGG + chr7_4:50805785-50805804 None:intergenic 40.0%
TTTGTTTAATGCCCTCCTTG+TGG - chr7_4:50805787-50805806 Msa1160740:intron 40.0%
ATACCAGAACAGCTACTAGT+AGG + chr7_4:50805977-50805996 None:intergenic 40.0%
!! GTGTACTATGGGCATTGAAA+TGG - chr7_4:50806026-50806045 Msa1160740:CDS 40.0%
TCAGGTGAGAATCATTTCTC+AGG - chr7_4:50806100-50806119 Msa1160740:intron 40.0%
CAGGTGAGAATCATTTCTCA+GGG - chr7_4:50806101-50806120 Msa1160740:intron 40.0%
AGAATCATTTCTCAGGGTCA+AGG - chr7_4:50806107-50806126 Msa1160740:intron 40.0%
!! AGGATAGACAGTTCTAAGCT+TGG - chr7_4:50806127-50806146 Msa1160740:intron 40.0%
! ACCTCTGAAGAAGTTTCAAC+AGG + chr7_4:50806169-50806188 None:intergenic 40.0%
TGTTGAAACTTCTTCAGAGG+TGG - chr7_4:50806168-50806187 Msa1160740:intron 40.0%
GTTGAAACTTCTTCAGAGGT+GGG - chr7_4:50806169-50806188 Msa1160740:intron 40.0%
CACTTCTTACAGCGATATGT+AGG + chr7_4:50806226-50806245 None:intergenic 40.0%
CATGTCGTAGATCATATTCC+TGG - chr7_4:50806271-50806290 Msa1160740:intron 40.0%
TGTCGTAGATCATATTCCTG+GGG - chr7_4:50806273-50806292 Msa1160740:intron 40.0%
CCGTAGAGGCTCAATAAATA+TGG + chr7_4:50806377-50806396 None:intergenic 40.0%
TATTTATTGAGCCTCTACGG+TGG - chr7_4:50806377-50806396 Msa1160740:intron 40.0%
GGAATCCACTCAAACAATGT+AGG + chr7_4:50806610-50806629 None:intergenic 40.0%
CATTTCTTGTCACTCAGTTG+AGG - chr7_4:50806707-50806726 Msa1160740:intron 40.0%
! CCAATTGAAGTATCCCAAAC+GGG + chr7_4:50806775-50806794 None:intergenic 40.0%
! CCCAATTGAAGTATCCCAAA+CGG + chr7_4:50806776-50806795 None:intergenic 40.0%
! CCGTTTGGGATACTTCAATT+GGG - chr7_4:50806773-50806792 Msa1160740:intron 40.0%
CAAGAACAATGGAGAAAAGG+TGG + chr7_4:50806930-50806949 None:intergenic 40.0%
! CACCTTTTCTCCATTGTTCT+TGG - chr7_4:50806928-50806947 Msa1160740:intron 40.0%
GTCCAAGAACAATGGAGAAA+AGG + chr7_4:50806933-50806952 None:intergenic 40.0%
GAATGCAAGTCCAAGAACAA+TGG + chr7_4:50806941-50806960 None:intergenic 40.0%
CAAATGCAGTTATGGTTGAG+AGG - chr7_4:50807049-50807068 Msa1160740:intron 40.0%
! GGATATCAAGTTGTCTCTGT+AGG - chr7_4:50807269-50807288 Msa1160740:CDS 40.0%
! TGTGTGTAAGGTTTGTTTGG+TGG - chr7_4:50807425-50807444 Msa1160740:CDS 40.0%
TATTATCCTATCTGGCAGAC+TGG - chr7_4:50807506-50807525 Msa1160740:exon 40.0%
TGCTGATGAAGAGGTTCTCA+CGG + chr7_4:50802802-50802821 None:intergenic 45.0%
CGATGATGTTGCTGATGAAG+AGG + chr7_4:50802811-50802830 None:intergenic 45.0%
! GCTGGTGGTTTGGAGAATTT+CGG + chr7_4:50802840-50802859 None:intergenic 45.0%
! CTTTGGAGATCTCCTTGACA+GGG + chr7_4:50802955-50802974 None:intergenic 45.0%
! ACTTTGGAGATCTCCTTGAC+AGG + chr7_4:50802956-50802975 None:intergenic 45.0%
ACGAGTACAGAAGCTTATCC+GGG + chr7_4:50803021-50803040 None:intergenic 45.0%
GGATAAGCTTCTGTACTCGT+TGG - chr7_4:50803021-50803040 Msa1160740:three_prime_UTR 45.0%
!! GTTTCGCTGGTGTTTCTAGA+AGG - chr7_4:50803185-50803204 Msa1160740:three_prime_UTR 45.0%
!! AAGCTGTTTTCAAGGTACCC+TGG + chr7_4:50803679-50803698 None:intergenic 45.0%
!! TGTTTTTGTCTGCAGTGCAG+CGG - chr7_4:50803848-50803867 Msa1160740:intron 45.0%
GCTCTGCTTTAACGATGCAA+GGG + chr7_4:50804211-50804230 None:intergenic 45.0%
AGCTCTGCTTTAACGATGCA+AGG + chr7_4:50804212-50804231 None:intergenic 45.0%
!! GCTCTAGAAAGCCATCATTG+GGG + chr7_4:50804248-50804267 None:intergenic 45.0%
!! CTGCTCTAGAAAGCCATCAT+TGG + chr7_4:50804250-50804269 None:intergenic 45.0%
!! CAATGATGGCTTTCTAGAGC+AGG - chr7_4:50804248-50804267 Msa1160740:intron 45.0%
! GTTTGAGGAGATGGGTTTCA+AGG - chr7_4:50804371-50804390 Msa1160740:intron 45.0%
!! GACGAAAGCGCTTGTATACA+GGG + chr7_4:50804410-50804429 None:intergenic 45.0%
!! AGACGAAAGCGCTTGTATAC+AGG + chr7_4:50804411-50804430 None:intergenic 45.0%
TCACGACTTCCTTCATGTTG+TGG - chr7_4:50804456-50804475 Msa1160740:intron 45.0%
CACGACTTCCTTCATGTTGT+GGG - chr7_4:50804457-50804476 Msa1160740:intron 45.0%
!! AGCTAGCTTTAACGGCAGTA+CGG - chr7_4:50804867-50804886 Msa1160740:intron 45.0%
TCACGAATCGCGAAGAATAG+TGG + chr7_4:50804937-50804956 None:intergenic 45.0%
TTCCTCTGTCTTGCATAGCT+AGG - chr7_4:50805071-50805090 Msa1160740:intron 45.0%
TCCTCTGTCTTGCATAGCTA+GGG - chr7_4:50805072-50805091 Msa1160740:intron 45.0%
TGCATAGCTAGGGCTATGTT+TGG - chr7_4:50805082-50805101 Msa1160740:intron 45.0%
GCATAGCTAGGGCTATGTTT+GGG - chr7_4:50805083-50805102 Msa1160740:intron 45.0%
TAGGGCTATGTTTGGGAGTT+TGG - chr7_4:50805090-50805109 Msa1160740:intron 45.0%
GCTATGTTTGGGAGTTTGGT+GGG - chr7_4:50805094-50805113 Msa1160740:intron 45.0%
! TTTGGGAGTTTGGTGGGAAA+TGG - chr7_4:50805100-50805119 Msa1160740:intron 45.0%
AATGGGAAAAGGGAAGGAGA+AGG - chr7_4:50805147-50805166 Msa1160740:intron 45.0%
GGACTAAAACCCTCCGATAT+TGG - chr7_4:50805216-50805235 Msa1160740:intron 45.0%
!! GGTTTTCTTTGGGAGTTAGG+AGG + chr7_4:50805461-50805480 None:intergenic 45.0%
TAGGAGAAGGCTGAGGTTAT+TGG - chr7_4:50805821-50805840 Msa1160740:intron 45.0%
GTTCCTACTAGTAGCTGTTC+TGG - chr7_4:50805971-50805990 Msa1160740:intron 45.0%
GCCTGTTGAAACTTCTTCAG+AGG - chr7_4:50806165-50806184 Msa1160740:intron 45.0%
GTAGATCATATTCCTGGGGA+GGG - chr7_4:50806277-50806296 Msa1160740:intron 45.0%
ACGGTGGATGAAAGATGGTA+AGG - chr7_4:50806393-50806412 Msa1160740:CDS 45.0%
CGGTGGATGAAAGATGGTAA+GGG - chr7_4:50806394-50806413 Msa1160740:CDS 45.0%
TCTTGTCACTCAGTTGAGGA+AGG - chr7_4:50806711-50806730 Msa1160740:intron 45.0%
! CCCGTTTGGGATACTTCAAT+TGG - chr7_4:50806772-50806791 Msa1160740:intron 45.0%
TTGGGATACTTCAATTGGGC+AGG - chr7_4:50806777-50806796 Msa1160740:intron 45.0%
TGGTGCAACAAGACTTACAC+GGG + chr7_4:50806873-50806892 None:intergenic 45.0%
GTGGTGCAACAAGACTTACA+CGG + chr7_4:50806874-50806893 None:intergenic 45.0%
TCATTTGCAGTTGAGCAGCT+AGG + chr7_4:50806976-50806995 None:intergenic 45.0%
CATACCTGCTCAAGATTTCG+AGG - chr7_4:50807021-50807040 Msa1160740:intron 45.0%
TTAGCCTCGAAATCTTGAGC+AGG + chr7_4:50807028-50807047 None:intergenic 45.0%
! GTAAGGTTTGTTTGGTGGCT+AGG - chr7_4:50807430-50807449 Msa1160740:CDS 45.0%
!! ATGAGGGAAGGCATCGGAAT+CGG + chr7_4:50802779-50802798 None:intergenic 50.0%
GAAGAGGTTCTCACGGATGA+GGG + chr7_4:50802795-50802814 None:intergenic 50.0%
TGAAGAGGTTCTCACGGATG+AGG + chr7_4:50802796-50802815 None:intergenic 50.0%
AGGATGTGGGTGATGTTGTG+GGG + chr7_4:50802872-50802891 None:intergenic 50.0%
GAGGATGTGGGTGATGTTGT+GGG + chr7_4:50802873-50802892 None:intergenic 50.0%
AGAGGATGTGGGTGATGTTG+TGG + chr7_4:50802874-50802893 None:intergenic 50.0%
GGAGAAGAAGGAGATGGAAG+CGG + chr7_4:50802909-50802928 None:intergenic 50.0%
CCATTCGGAGAAGAAGGAGA+TGG + chr7_4:50802915-50802934 None:intergenic 50.0%
CCATCTCCTTCTTCTCCGAA+TGG - chr7_4:50802912-50802931 Msa1160740:three_prime_UTR 50.0%
AGAACGCCATTCGGAGAAGA+AGG + chr7_4:50802921-50802940 None:intergenic 50.0%
GGAGAAGGAAGAACGCCATT+CGG + chr7_4:50802930-50802949 None:intergenic 50.0%
GAGGTCGGAGACATGAACTT+TGG + chr7_4:50802972-50802991 None:intergenic 50.0%
CGAGTACAGAAGCTTATCCG+GGG + chr7_4:50803020-50803039 None:intergenic 50.0%
CTGTACTCGTTGGAATACGC+CGG - chr7_4:50803031-50803050 Msa1160740:three_prime_UTR 50.0%
TGTACTCGTTGGAATACGCC+GGG - chr7_4:50803032-50803051 Msa1160740:three_prime_UTR 50.0%
TCACTCTCAGTATCCCTCAG+CGG + chr7_4:50803088-50803107 None:intergenic 50.0%
GCATGCTTATGTCACTGCGT+AGG + chr7_4:50803316-50803335 None:intergenic 50.0%
! AAGGTACCCTGGAGAGCTTA+TGG + chr7_4:50803668-50803687 None:intergenic 50.0%
CTGCAGTGCAGCGGTTATTA+CGG - chr7_4:50803857-50803876 Msa1160740:intron 50.0%
!! TAACGATGCAAGGGCATCTG+CGG + chr7_4:50804202-50804221 None:intergenic 50.0%
CATGAGGTCCCACAACATGA+AGG + chr7_4:50804468-50804487 None:intergenic 50.0%
GGCTATGTTTGGGAGTTTGG+TGG - chr7_4:50805093-50805112 Msa1160740:intron 50.0%
! GGAGTTTGGTGGGAAATGGA+GGG - chr7_4:50805104-50805123 Msa1160740:intron 50.0%
! GAGTTTGGTGGGAAATGGAG+GGG - chr7_4:50805105-50805124 Msa1160740:intron 50.0%
! AGTTTGGTGGGAAATGGAGG+GGG - chr7_4:50805106-50805125 Msa1160740:intron 50.0%
! AAATGGAGGGGGGAGTTTTG+AGG - chr7_4:50805117-50805136 Msa1160740:intron 50.0%
GAGTTAGGAGGGAAACGAAG+GGG + chr7_4:50805449-50805468 None:intergenic 50.0%
GGAGTTAGGAGGGAAACGAA+GGG + chr7_4:50805450-50805469 None:intergenic 50.0%
GTTTAATGCCCTCCTTGTGG+TGG - chr7_4:50805790-50805809 Msa1160740:intron 50.0%
!! TCTAAGCTTGGTGCAGATCC+TGG - chr7_4:50806139-50806158 Msa1160740:intron 50.0%
GAAGTTTCAACAGGCATGCC+AGG + chr7_4:50806160-50806179 None:intergenic 50.0%
CGTAGATCATATTCCTGGGG+AGG - chr7_4:50806276-50806295 Msa1160740:intron 50.0%
CCATCTTTCATCCACCGTAG+AGG + chr7_4:50806391-50806410 None:intergenic 50.0%
CCTCTACGGTGGATGAAAGA+TGG - chr7_4:50806388-50806407 Msa1160740:CDS 50.0%
TGCTCATTGTGATGCCCGTT+TGG - chr7_4:50806758-50806777 Msa1160740:intron 50.0%
GCTCATTGTGATGCCCGTTT+GGG - chr7_4:50806759-50806778 Msa1160740:intron 50.0%
TACAATGCAGCTGTGGAAGC+TGG - chr7_4:50806802-50806821 Msa1160740:intron 50.0%
GGTGCAACAAGACTTACACG+GGG + chr7_4:50806872-50806891 None:intergenic 50.0%
!! AGGCATCGGAATCGGAACGA+AGG + chr7_4:50802771-50802790 None:intergenic 55.0%
! TCACGGATGAGGGAAGGCAT+CGG + chr7_4:50802785-50802804 None:intergenic 55.0%
AGGTTCTCACGGATGAGGGA+AGG + chr7_4:50802791-50802810 None:intergenic 55.0%
GGATGTGGGTGATGTTGTGG+GGG + chr7_4:50802871-50802890 None:intergenic 55.0%
GCTGAGAACGGAGAGGATGT+GGG + chr7_4:50802885-50802904 None:intergenic 55.0%
AGCTGAGAACGGAGAGGATG+TGG + chr7_4:50802886-50802905 None:intergenic 55.0%
GATGGAAGCGGAGCTGAGAA+CGG + chr7_4:50802897-50802916 None:intergenic 55.0%
TTCCTTCTCCGTCCCTGTCA+AGG - chr7_4:50802940-50802959 Msa1160740:three_prime_UTR 55.0%
GGAGATCTCCTTGACAGGGA+CGG + chr7_4:50802951-50802970 None:intergenic 55.0%
TCATGTCTCCGACCTCCCTA+CGG - chr7_4:50802976-50802995 Msa1160740:three_prime_UTR 55.0%
AAGCTTATCCGGGGAGAGAG+CGG + chr7_4:50803011-50803030 None:intergenic 55.0%
GTACTCGTTGGAATACGCCG+GGG - chr7_4:50803033-50803052 Msa1160740:three_prime_UTR 55.0%
GTCTTCAGGGACTTCGCGTT+TGG - chr7_4:50803951-50803970 Msa1160740:CDS 55.0%
GCCCTAGCTATGCAAGACAG+AGG + chr7_4:50805076-50805095 None:intergenic 55.0%
! GGGAGTTTGGTGGGAAATGG+AGG - chr7_4:50805103-50805122 Msa1160740:intron 55.0%
! GTTTGGTGGGAAATGGAGGG+GGG - chr7_4:50805107-50805126 Msa1160740:intron 55.0%
!! AAGGCTTTGGAGGGAATGGG+AGG + chr7_4:50805426-50805445 None:intergenic 55.0%
!! GGGAAGGCTTTGGAGGGAAT+GGG + chr7_4:50805429-50805448 None:intergenic 55.0%
!! ACGAAGGGGAAGGCTTTGGA+GGG + chr7_4:50805435-50805454 None:intergenic 55.0%
! AACGAAGGGGAAGGCTTTGG+AGG + chr7_4:50805436-50805455 None:intergenic 55.0%
GGAAACGAAGGGGAAGGCTT+TGG + chr7_4:50805439-50805458 None:intergenic 55.0%
TAGGAGGGAAACGAAGGGGA+AGG + chr7_4:50805445-50805464 None:intergenic 55.0%
GGGAGTTAGGAGGGAAACGA+AGG + chr7_4:50805451-50805470 None:intergenic 55.0%
TCCCTCAACCACCACAAGGA+GGG + chr7_4:50805801-50805820 None:intergenic 55.0%
ATCCCTCAACCACCACAAGG+AGG + chr7_4:50805802-50805821 None:intergenic 55.0%
CCTATCCCTCAACCACCACA+AGG + chr7_4:50805805-50805824 None:intergenic 55.0%
CCTTGTGGTGGTTGAGGGAT+AGG - chr7_4:50805802-50805821 Msa1160740:intron 55.0%
GGTGGTTGAGGGATAGGAGA+AGG - chr7_4:50805808-50805827 Msa1160740:intron 55.0%
TGAGGGATAGGAGAAGGCTG+AGG - chr7_4:50805814-50805833 Msa1160740:intron 55.0%
AGGGTGAGACATCCTTTGGC+TGG - chr7_4:50806296-50806315 Msa1160740:intron 55.0%
CATCCTTTGGCTGGCACAAG+CGG - chr7_4:50806305-50806324 Msa1160740:intron 55.0%
TTTCCGCTTGTGCCAGCCAA+AGG + chr7_4:50806311-50806330 None:intergenic 55.0%
ACGGGCATCACAATGAGCAC+AGG + chr7_4:50806757-50806776 None:intergenic 55.0%
GCAGGCATACAATGCAGCTG+TGG - chr7_4:50806795-50806814 Msa1160740:intron 55.0%
CTACTGCCAGTCTGCCAGAT+AGG + chr7_4:50807515-50807534 None:intergenic 55.0%
GTGGGTGATGTTGTGGGGGA+CGG + chr7_4:50802867-50802886 None:intergenic 60.0%
AAGCGGAGCTGAGAACGGAG+AGG + chr7_4:50802892-50802911 None:intergenic 60.0%
CTCCTTGACAGGGACGGAGA+AGG + chr7_4:50802945-50802964 None:intergenic 60.0%
! TTAGGATGGCTGTGCCGCTG+AGG - chr7_4:50803071-50803090 Msa1160740:three_prime_UTR 60.0%
! TAGGATGGCTGTGCCGCTGA+GGG - chr7_4:50803072-50803091 Msa1160740:three_prime_UTR 60.0%
!! GGGGAAGGCTTTGGAGGGAA+TGG + chr7_4:50805430-50805449 None:intergenic 60.0%
TGCCCTCCTTGTGGTGGTTG+AGG - chr7_4:50805796-50805815 Msa1160740:intron 60.0%
GCCCTCCTTGTGGTGGTTGA+GGG - chr7_4:50805797-50805816 Msa1160740:intron 60.0%
AAGGATGTCTCACCCTCCCC+AGG + chr7_4:50806292-50806311 None:intergenic 60.0%
GGGGAGGGTGAGACATCCTT+TGG - chr7_4:50806292-50806311 Msa1160740:intron 60.0%
GGCTGGCACAAGCGGAAAAG+TGG - chr7_4:50806313-50806332 Msa1160740:intron 60.0%
! CTCAGTTGAGGAAGGCGCGT+TGG - chr7_4:50806719-50806738 Msa1160740:intron 60.0%
! AGTTGAGGAAGGCGCGTTGG+AGG - chr7_4:50806722-50806741 Msa1160740:intron 60.0%
! GTTGAGGAAGGCGCGTTGGA+GGG - chr7_4:50806723-50806742 Msa1160740:intron 60.0%
!! GGACGGTGGTGCTGGTGGTT+TGG + chr7_4:50802850-50802869 None:intergenic 65.0%
GGTGATGTTGTGGGGGACGG+TGG + chr7_4:50802864-50802883 None:intergenic 65.0%
! ATCCGGGGAGAGAGCGGACT+TGG + chr7_4:50803005-50803024 None:intergenic 65.0%
GTTGTGGGGGACGGTGGTGC+TGG + chr7_4:50802858-50802877 None:intergenic 70.0%
CTTGGCGGCCGTAGGGAGGT+CGG + chr7_4:50802987-50803006 None:intergenic 70.0%
! GAGCGGACTTGGCGGCCGTA+GGG + chr7_4:50802994-50803013 None:intergenic 70.0%
! AGAGCGGACTTGGCGGCCGT+AGG + chr7_4:50802995-50803014 None:intergenic 70.0%
! CGGGGAGAGAGCGGACTTGG+CGG + chr7_4:50803002-50803021 None:intergenic 70.0%
CGCCAAGTCCGCTCTCTCCC+CGG - chr7_4:50803000-50803019 Msa1160740:three_prime_UTR 70.0%
! GTGGGGGACGGTGGTGCTGG+TGG + chr7_4:50802855-50802874 None:intergenic 75.0%
CGGACTTGGCGGCCGTAGGG+AGG + chr7_4:50802991-50803010 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr7_4 gene 50802744 50807551 50802744 ID=Msa1160740;Name=Msa1160740
chr7_4 mRNA 50802744 50807551 50802744 ID=Msa1160740-mRNA-1;Parent=Msa1160740;Name=Msa1160740-mRNA-1;_AED=0.11;_eAED=0.11;_QI=41|1|1|1|1|1|6|673|359
chr7_4 exon 50802744 50803571 50802744 ID=Msa1160740-mRNA-1:exon:14251;Parent=Msa1160740-mRNA-1
chr7_4 exon 50803886 50804191 50803886 ID=Msa1160740-mRNA-1:exon:14250;Parent=Msa1160740-mRNA-1
chr7_4 exon 50805854 50805932 50805854 ID=Msa1160740-mRNA-1:exon:14249;Parent=Msa1160740-mRNA-1
chr7_4 exon 50806026 50806090 50806026 ID=Msa1160740-mRNA-1:exon:14248;Parent=Msa1160740-mRNA-1
chr7_4 exon 50806380 50806432 50806380 ID=Msa1160740-mRNA-1:exon:14247;Parent=Msa1160740-mRNA-1
chr7_4 exon 50807089 50807551 50807089 ID=Msa1160740-mRNA-1:exon:14246;Parent=Msa1160740-mRNA-1
chr7_4 five_prime_UTR 50807511 50807551 50807511 ID=Msa1160740-mRNA-1:five_prime_utr;Parent=Msa1160740-mRNA-1
chr7_4 CDS 50807089 50807510 50807089 ID=Msa1160740-mRNA-1:cds;Parent=Msa1160740-mRNA-1
chr7_4 CDS 50806380 50806432 50806380 ID=Msa1160740-mRNA-1:cds;Parent=Msa1160740-mRNA-1
chr7_4 CDS 50806026 50806090 50806026 ID=Msa1160740-mRNA-1:cds;Parent=Msa1160740-mRNA-1
chr7_4 CDS 50805854 50805932 50805854 ID=Msa1160740-mRNA-1:cds;Parent=Msa1160740-mRNA-1
chr7_4 CDS 50803886 50804191 50803886 ID=Msa1160740-mRNA-1:cds;Parent=Msa1160740-mRNA-1
chr7_4 CDS 50803417 50803571 50803417 ID=Msa1160740-mRNA-1:cds;Parent=Msa1160740-mRNA-1
chr7_4 three_prime_UTR 50802744 50803416 50802744 ID=Msa1160740-mRNA-1:three_prime_utr;Parent=Msa1160740-mRNA-1
Gene Sequence

>Msa1160740

ATGCCTTCCCTCATCCGTGAGAACCTCTTCATCAGCAACATCATCGACGCTGCCGAAATTCTCCAAACCACCAGCACCACCGTCCCCCACAACATCACCCACATCCTCTCCGTTCTCAGCTCCGCTTCCATCTCCTTCTTCTCCGAATGGCGTTCTTCCTTCTCCGTCCCTGTCAAGGAGATCTCCAAAGTTCATGTCTCCGACCTCCCTACGGCCGCCAAGTCCGCTCTCTCCCCGGATAAGCTTCTGTACTCGTTGGAATACGCCGGGGAAGATTTTAAGCTTGTTAGGATGGCTGTGCCGCTGAGGGATACTGAGAGTGAGAATTTGTTGGATTACCTCGAAGTTTGTGTTGATTTTATTGAGAGGAGTAGGAAAGAAGGTTCTGTTTTGGTTCATTGTTTCGCTGGTGTTTCTAGAAGTGCAGCGGTTATTACGGCCTATTTGATGAAAAGCGAAAATTTGTCACTAGAAGATGCCCTTGCATCGTTAAAGCAGAGCTGTGAATTTGTTTGCCCCAATGATGGCTTTCTAGAGCAGTTGAAAATGTTTGAGGAGATGGGTTTCAAGGTTGATCAATCTAGCCCTGTATACAAGCGCTTTCGTCTAAAAATACTAGGTGAGAATCATTTCTCAGGGTCAAGGATAGACAGTTCTAAGCTTGGTGCAGATCCTGGCATGCCTGTTGAAACTTCTTCAGAGGTGGGAGAAGCTACTAAAGTAGAAAATAATCGTAGTCCTACATATCGCTGTAAGAAGTGTCGTCGTATTGTTGCATTGCAAGAACATGTCGTAGATCATATTCCTGGGGAGGGTGAGACATCCTTTGGCTGGCACAAGCGGAAAAGTGGCAATCCTTTTAACAAGTCTAATGAATCTGAGTGTTCGTCCATATTTATTGAGCCTCTACGGTGGATGAAAGATGTTGAGGAAGGCGCGTTGGAGGGAAAACTGTCCTGTGCTCATTGTGATGCCCGTTTGGGATACTTCAATTGGGCAGGCATACAATGCAGCTGTGGAAGCTGGATTACACCAGCTTTTCAACTACACAAAAGTCGGGTAGATATAAGCCCCGTGTAA
Protein sequence

>Msa1160740

MPSLIRENLFISNIIDAAEILQTTSTTVPHNITHILSVLSSASISFFSEWRSSFSVPVKEISKVHVSDLPTAAKSALSPDKLLYSLEYAGEDFKLVRMAVPLRDTESENLLDYLEVCVDFIERSRKEGSVLVHCFAGVSRSAAVITAYLMKSENLSLEDALASLKQSCEFVCPNDGFLEQLKMFEEMGFKVDQSSPVYKRFRLKILGENHFSGSRIDSSKLGADPGMPVETSSEVGEATKVENNRSPTYRCKKCRRIVALQEHVVDHIPGEGETSFGWHKRKSGNPFNKSNESECSSIFIEPLRWMKDVEEGALEGKLSCAHCDARLGYFNWAGIQCSCGSWITPAFQLHKSRVDISPV*