AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0608270

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608270 MtrunA17_Chr4g0040471 97.178 886 3 1 1 864 1 886 0.0 1757
Msa0608270 MtrunA17_Chr8g0392281 22.622 473 300 14 343 793 379 807 9.06e-15 79.0
Msa0608270 MtrunA17_Chr2g0311201 22.410 473 301 14 343 793 377 805 5.30e-14 76.6
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0608270 AT2G20580.1 81.271 897 129 5 1 864 1 891 0.0 1457
Msa0608270 AT4G28470.1 79.171 893 149 4 3 864 5 891 0.0 1432
Msa0608270 AT4G08140.1 80.000 70 14 0 51 120 2 71 2.47e-30 115
Msa0608270 AT1G04810.1 22.766 470 304 14 343 793 377 806 2.67e-14 77.8
Msa0608270 AT2G32730.1 22.766 470 304 14 343 793 377 806 3.07e-14 77.8

Find 228 sgRNAs with CRISPR-Local

Find 639 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TACTTATGGTGTCAGAAATT+TGG 0.163690 4_2:-55274014 Msa0608270:intron
GACTAGAATTGGTGCAATTA+TGG 0.180764 4_2:-55268578 Msa0608270:CDS
TTGACAAAACAAACTTTAAA+AGG 0.192273 4_2:-55273484 Msa0608270:CDS
GGCCTTGGTCTTCTTTATCT+TGG 0.200767 4_2:-55268234 Msa0608270:CDS
CATGCAGGTGCAAAATCTTT+TGG 0.202835 4_2:-55267791 Msa0608270:intron
AAAACCTCACCTGCTCATTC+TGG 0.227874 4_2:+55268530 None:intergenic
TAAAGGACAATCCAGATTAT+AGG 0.228060 4_2:-55266341 Msa0608270:CDS
ACCCCTGTTCTCCTGGCTGC+TGG 0.245592 4_2:-55266515 Msa0608270:CDS
GCTGGTGCTGGCGCCGTTGC+CGG 0.280560 4_2:+55275040 None:intergenic
TCTTCAAGTAGTGGTTCTTC+TGG 0.284064 4_2:-55269018 Msa0608270:CDS
AGCAATCATATTTACATTGA+TGG 0.285349 4_2:-55268307 Msa0608270:CDS
AAATACTATCAAAATGTAAA+AGG 0.288699 4_2:-55266241 Msa0608270:three_prime_UTR
GCCTTCACTGCAATTGCATT+GGG 0.289158 4_2:-55268369 Msa0608270:CDS
TGCCCAAGGTCTTGTACATT+TGG 0.290221 4_2:-55267057 Msa0608270:CDS
GCATTTGTTAATGCCGGATT+TGG 0.293129 4_2:-55269170 Msa0608270:CDS
GCGCCGTTGCCGGCGCGGTT+AGG 0.294433 4_2:+55275050 None:intergenic
TGTCATTGCTGGTGCATTAC+TGG 0.297812 4_2:-55268774 Msa0608270:CDS
CTAGGTTCAGAGGGAGATAT+TGG 0.298113 4_2:-55274220 Msa0608270:CDS
TCTTAGGCACATTTGCTTGA+TGG 0.300355 4_2:-55269257 Msa0608270:intron
TTCTCCTGGCTGCTGGGGAT+AGG 0.305991 4_2:-55266508 Msa0608270:CDS
TTCGTCATTGCAGAAGTATT+TGG 0.307151 4_2:-55274437 Msa0608270:intron
TATGGCGGAATCAGAGTTAA+AGG 0.315185 4_2:-55274537 Msa0608270:intron
CGTGCAGTCAGATGAAGATT+TGG 0.320246 4_2:-55274861 Msa0608270:intron
ATTTGATCAGGTCAATGTTA+TGG 0.321936 4_2:-55267411 Msa0608270:intron
AATGCAATTTGCAGTGCATT+TGG 0.325383 4_2:+55271984 None:intergenic
AAAGGACAATCCAGATTATA+GGG 0.325952 4_2:-55266340 Msa0608270:CDS
TTTGGCGGTGCCGCTGGTGC+TGG 0.327421 4_2:+55275028 None:intergenic
TCCCCAGCAGCCAGGAGAAC+AGG 0.334078 4_2:+55266512 None:intergenic
TGTTCTCTACTTCCTCGTTT+TGG 0.335578 4_2:-55266755 Msa0608270:CDS
TGTGAGTGTGTTAAATTAAA+AGG 0.336064 4_2:+55275185 None:intergenic
ATTGGTGCAATTATGGGATT+AGG 0.338723 4_2:-55268571 Msa0608270:CDS
CCCCTGTTCTCCTGGCTGCT+GGG 0.345055 4_2:-55266514 Msa0608270:CDS
CCCCTATCACCAATTCTTGA+AGG 0.345401 4_2:-55266375 Msa0608270:CDS
ACTAGAATTGGTGCAATTAT+GGG 0.345863 4_2:-55268577 Msa0608270:CDS
CTCCCTCAGCAGACATTGTA+AGG 0.346118 4_2:+55274392 None:intergenic
CAAATATCCTTCACTTAACT+TGG 0.350252 4_2:+55271413 None:intergenic
TGAAAGCCGGTGATTGTCTT+AGG 0.351647 4_2:+55266548 None:intergenic
ATTACAAAACCTTCAAGAAT+TGG 0.353080 4_2:+55266366 None:intergenic
TGCACCTTGTATATATCTTC+AGG 0.356157 4_2:+55271351 None:intergenic
GGCTGACATATTATCAGTAT+TGG 0.356961 4_2:-55274416 Msa0608270:CDS
GTTATCTCCTTGGGTCTAAT+AGG 0.358044 4_2:-55267252 Msa0608270:CDS
GCCTTGGTCTTCTTTATCTT+GGG 0.359647 4_2:-55268233 Msa0608270:CDS
GTTGCCGGCGCGGTTAGGTT+CGG 0.361415 4_2:+55275055 None:intergenic
GTAGCAATGGCTGAAGAATT+AGG 0.361899 4_2:-55267700 Msa0608270:CDS
GCCCAAGGTCTTGTACATTT+GGG 0.363986 4_2:-55267056 Msa0608270:CDS
TGACATGGTTATCATTACTA+TGG 0.373993 4_2:+55268792 None:intergenic
TGCCTTCACTGCAATTGCAT+TGG 0.375145 4_2:-55268370 Msa0608270:CDS
GAAGATAGTTCGACTAGAAT+TGG 0.377228 4_2:-55268589 Msa0608270:CDS
GACTAGTGCTGCTGCAAGTC+TGG 0.377954 4_2:-55268962 Msa0608270:intron
GCCTCTATCAGTGCCTGTTC+GGG 0.382032 4_2:-55266609 Msa0608270:CDS
TAAGGCATATTATGAAACTA+TGG 0.383151 4_2:-55274555 Msa0608270:CDS
ACAAACAATGCTCGAATTGC+CGG 0.384804 4_2:-55267222 Msa0608270:CDS
TCATGTGCCTATGCTGGAAC+TGG 0.385983 4_2:-55267914 Msa0608270:CDS
AGCCTCTATCAGTGCCTGTT+CGG 0.386811 4_2:-55266610 Msa0608270:CDS
TTGCCGGCGCGGTTAGGTTC+GGG 0.387598 4_2:+55275056 None:intergenic
CGAAGAACGAGAAGTGTTGC+AGG 0.387775 4_2:-55271451 Msa0608270:CDS
TTCGTCTTTGGCGGTGCCGC+TGG 0.390264 4_2:+55275022 None:intergenic
CGACTTCTCCCTCTTGGCCT+TGG 0.391180 4_2:-55268249 Msa0608270:CDS
CATGGGGACATGAGTATGTT+AGG 0.392382 4_2:-55274195 Msa0608270:intron
TCATTCTACCCCTGTTCTCC+TGG 0.393262 4_2:-55266522 Msa0608270:CDS
GTAGTGGTTCTTCTGGAAAC+TGG 0.395865 4_2:-55269011 Msa0608270:CDS
TTAGAACATCTTCTACAGTA+TGG 0.397139 4_2:-55267655 Msa0608270:CDS
TCTCCTGGCTGCTGGGGATA+GGG 0.401494 4_2:-55266507 Msa0608270:CDS
CATCACTCTTCCCTATAATC+TGG 0.405215 4_2:+55266330 None:intergenic
AACCTTCAAGAATTGGTGAT+AGG 0.407353 4_2:+55266373 None:intergenic
TTTCACGCTAAATCGAACTT+AGG 0.407501 4_2:-55275107 Msa0608270:five_prime_UTR
CTTGATGGCCGTGCAAGTGC+TGG 0.408444 4_2:-55269242 Msa0608270:CDS
TCTTCTTTATCTTGGGAAGC+AGG 0.420669 4_2:-55268226 Msa0608270:intron
ACTGCTTGGCCAACCCGAAC+AGG 0.423439 4_2:+55266596 None:intergenic
GTTGTATGTTGAGAGGGTTC+AGG 0.424586 4_2:-55274819 Msa0608270:CDS
CGAGCAGTTCCTCTGGCACT+TGG 0.426143 4_2:-55267616 Msa0608270:CDS
ACAGGCAGCAGTTATCTCCT+TGG 0.429907 4_2:-55267262 Msa0608270:intron
CACCAAGGTCCTGCAGTCCT+TGG 0.430705 4_2:-55267733 Msa0608270:CDS
ACTGCAAATTGCATTGTTCA+TGG 0.433433 4_2:-55271976 Msa0608270:CDS
TTGGAGAATTTAACAGATTG+AGG 0.433469 4_2:+55275221 None:intergenic
TGTTAATGCCGGATTTGGTC+AGG 0.436038 4_2:-55269165 Msa0608270:intron
TGCGGCAGCTTCGTCTTTGG+CGG 0.436686 4_2:+55275013 None:intergenic
GTTAATGCATTTGTTAATGC+CGG 0.439292 4_2:-55269176 Msa0608270:CDS
CGTAGAAACTTCAGTGGCTT+GGG 0.439539 4_2:+55274596 None:intergenic
CTCCCTCTGAACCTAGTAAT+CGG 0.440688 4_2:+55274227 None:intergenic
CTTACGCGACTTCTCCCTCT+TGG 0.441492 4_2:-55268255 Msa0608270:CDS
ATCATGGCTAAGTCTGCTTA+AGG 0.441554 4_2:+55267385 None:intergenic
GTGTCGATTAATTTGAAAGA+TGG 0.442501 4_2:-55266132 Msa0608270:three_prime_UTR
GAAGATCGAGAGCGAAGATC+TGG 0.445605 4_2:-55274985 Msa0608270:intron
AAACCTCACCTGCTCATTCT+GGG 0.446754 4_2:+55268531 None:intergenic
TGAAACATACACAAAATAGA+AGG 0.448647 4_2:+55267157 None:intergenic
AATGATAACCATGTCATTGC+TGG 0.449019 4_2:-55268785 Msa0608270:CDS
CAGGCAGCAGTTATCTCCTT+GGG 0.449890 4_2:-55267261 Msa0608270:CDS
GGCAACGGCGCCAGCACCAG+CGG 0.456358 4_2:-55275038 Msa0608270:CDS
TTCACGCTAAATCGAACTTA+GGG 0.456411 4_2:-55275106 Msa0608270:five_prime_UTR
GAAAGATGGTTTATTAATTG+TGG 0.457827 4_2:-55266118 Msa0608270:three_prime_UTR
AGCAGTAGACGTTGTTGGAC+AGG 0.459860 4_2:-55266579 Msa0608270:CDS
TCATTGTACCTGACCAAATC+CGG 0.459928 4_2:+55269157 None:intergenic
AGAGGGAGAAGTCGCGTAAG+AGG 0.462942 4_2:+55268258 None:intergenic
CTACTATCATGTGCCTATGC+TGG 0.463677 4_2:-55267920 Msa0608270:CDS
AATGTCTGCTGAGGGAGAAC+GGG 0.467324 4_2:-55274386 Msa0608270:intron
TTACTATGGGATGTTGACTC+TGG 0.470974 4_2:-55268839 Msa0608270:CDS
GCCACATTACGGTACTCTTA+AGG 0.471860 4_2:-55274573 Msa0608270:CDS
ATCAAAAGATCAACAGCCTC+TGG 0.472093 4_2:+55273631 None:intergenic
TCACACTTCCTCTTCTCCGA+TGG 0.473659 4_2:-55275081 Msa0608270:exon
TCCCAAATGTACAAGACCTT+GGG 0.474672 4_2:+55267055 None:intergenic
ATCACGTCAAGCGAAGCTTT+AGG 0.474727 4_2:+55268393 None:intergenic
ACCTTCAAGAATTGGTGATA+GGG 0.476467 4_2:+55266374 None:intergenic
CAGAGGGAGATATTGGTTCA+TGG 0.477824 4_2:-55274213 Msa0608270:CDS
AGTCTCAAATACCGATTACT+AGG 0.479190 4_2:-55274238 Msa0608270:CDS
TTTGGCTTTGAAGCAACAGC+TGG 0.479199 4_2:-55274843 Msa0608270:CDS
TGCTGGCGCCGTTGCCGGCG+CGG 0.483349 4_2:+55275045 None:intergenic
AGAGCAACCTTCTGCAACCC+GGG 0.485765 4_2:+55274788 None:intergenic
CCGTAGAAACTTCAGTGGCT+TGG 0.486666 4_2:+55274595 None:intergenic
AAGTTTCTACGGCCACATTA+CGG 0.488041 4_2:-55274584 Msa0608270:CDS
TTCCCAAATGTACAAGACCT+TGG 0.489170 4_2:+55267054 None:intergenic
CTGCCCTATCCCCAGCAGCC+AGG 0.494849 4_2:+55266504 None:intergenic
ATTAAAAGTCTTTGAAACTT+CGG 0.496334 4_2:+55267973 None:intergenic
AGAGGGAGATATTGGTTCAT+GGG 0.496959 4_2:-55274212 Msa0608270:CDS
GCCCAATGCAATTGCAGTGA+AGG 0.498300 4_2:+55268368 None:intergenic
TCCAATACTAGCATATCATC+TGG 0.498885 4_2:+55272044 None:intergenic
TATGGTGTCAGAAATTTGGC+TGG 0.499427 4_2:-55274010 Msa0608270:intron
TATTCGCCGAGCAGTTCCTC+TGG 0.500504 4_2:-55267623 Msa0608270:CDS
TGCAGTCCTTGGAATTGCTA+TGG 0.502997 4_2:-55267722 Msa0608270:CDS
CAATGTCTGCTGAGGGAGAA+CGG 0.504450 4_2:-55274387 Msa0608270:CDS
GTCATTGCTGGTGCATTACT+GGG 0.505397 4_2:-55268773 Msa0608270:CDS
ACACAATAGCTTTCATATCA+AGG 0.505784 4_2:+55266794 None:intergenic
GGTCTTGTACATTTGGGAAA+GGG 0.507186 4_2:-55267050 Msa0608270:CDS
GATCGGAGTGAGTCAGAGTT+GGG 0.508316 4_2:-55268285 Msa0608270:CDS
CCCTGTTCTCCTGGCTGCTG+GGG 0.508335 4_2:-55266513 Msa0608270:CDS
GGATTAGGAATTGCATATGC+TGG 0.510069 4_2:-55268556 Msa0608270:CDS
AAGAGCAACCTTCTGCAACC+CGG 0.510865 4_2:+55274787 None:intergenic
GATATGAAAGCTATTGTGTT+GGG 0.511246 4_2:-55266790 Msa0608270:CDS
TATATATCTTCAGGGGACTT+AGG 0.511864 4_2:+55271360 None:intergenic
GCACCTTGTATATATCTTCA+GGG 0.512615 4_2:+55271352 None:intergenic
ACCCGAACAGGCACTGATAG+AGG 0.514416 4_2:+55266608 None:intergenic
TGGCTTGGGCACTGAAGTCA+TGG 0.515550 4_2:+55274610 None:intergenic
GGATCGGAGTGAGTCAGAGT+TGG 0.515747 4_2:-55268286 Msa0608270:CDS
ACCAGATGATATGCTAGTAT+TGG 0.515944 4_2:-55272045 Msa0608270:CDS
TCATATTTACATTGATGGAT+CGG 0.517102 4_2:-55268302 Msa0608270:CDS
GCTTTAGGATCACTCAGAAT+AGG 0.517639 4_2:+55268408 None:intergenic
TGCATTGGGCTTGATTTACG+TGG 0.518309 4_2:-55268355 Msa0608270:CDS
CAACTTCTGAATCAGTATCA+TGG 0.519781 4_2:+55267369 None:intergenic
GAACCTAACCGCGCCGGCAA+CGG 0.523030 4_2:-55275053 Msa0608270:CDS
CTCCATGACTTCAATATCAC+GGG 0.523436 4_2:+55271383 None:intergenic
CTTTCAGTTACGATACAAGT+TGG 0.527671 4_2:-55268433 Msa0608270:intron
TCCTTGGGTCTAATAGGCGC+TGG 0.528692 4_2:-55267246 Msa0608270:CDS
CCCCAGCAGCCAGGAGAACA+GGG 0.529499 4_2:+55266513 None:intergenic
GCATCAGATTCTTCAAGTAG+TGG 0.529733 4_2:-55269027 Msa0608270:CDS
GTCCAACAACGTCTACTGCT+TGG 0.531076 4_2:+55266582 None:intergenic
AAAGAAGACCAAGGCCAAGA+GGG 0.534797 4_2:+55268241 None:intergenic
ATTGTTCATGGATAACCTGC+TGG 0.537779 4_2:-55271964 Msa0608270:intron
TGAAAGATTGCGAAGCATGC+CGG 0.538412 4_2:+55267203 None:intergenic
CACTTGCACCAGCACTTGCA+CGG 0.542212 4_2:+55269234 None:intergenic
AGGGTTCAGGATACTGACCC+CGG 0.543270 4_2:-55274806 Msa0608270:CDS
TCATGGAGCTTGTAGAAGTA+CGG 0.544317 4_2:+55274627 None:intergenic
TGCCCGTGATATTGAAGTCA+TGG 0.546113 4_2:-55271385 Msa0608270:CDS
GGCCAAGCAGTAGACGTTGT+TGG 0.547192 4_2:-55266584 Msa0608270:CDS
TTCGGGAGCCATCGGAGAAG+AGG 0.550433 4_2:+55275073 None:intergenic
AAGACACGGTCAGAATGATA+AGG 0.550929 4_2:+55267011 None:intergenic
CTATCAGTGCCTGTTCGGGT+TGG 0.551095 4_2:-55266605 Msa0608270:CDS
GCTGGTGCATTACTGGGAGT+TGG 0.551767 4_2:-55268767 Msa0608270:CDS
TTCCAAGGACTGCAGGACCT+TGG 0.552548 4_2:+55267731 None:intergenic
GATGTTGTTGACTGTGGATG+AGG 0.554247 4_2:-55266639 Msa0608270:CDS
AGGTCTTGTACATTTGGGAA+AGG 0.555099 4_2:-55267051 Msa0608270:CDS
AACAATTCCAAGTTAAGTGA+AGG 0.556109 4_2:-55271420 Msa0608270:CDS
CCTTCAAGAATTGGTGATAG+GGG 0.557370 4_2:+55266375 None:intergenic
TACTGACCCCGGGTTGCAGA+AGG 0.557812 4_2:-55274795 Msa0608270:CDS
TTGTAGGCAATGGCACTCCT+TGG 0.558145 4_2:-55268628 Msa0608270:intron
ATTGAGGTTTCTTGTTGCAG+AGG 0.558950 4_2:+55275237 None:intergenic
TGCTGGTTCCCAGAATGAGC+AGG 0.560900 4_2:-55268539 Msa0608270:intron
CCAAGCCACTGAAGTTTCTA+CGG 0.562286 4_2:-55274595 Msa0608270:CDS
CGGTTAGGTTCGGGAGCCAT+CGG 0.562440 4_2:+55275065 None:intergenic
GTAGAAGATGTTCTAACGAT+CGG 0.567757 4_2:+55267662 None:intergenic
TCCACAGTCAACAACATCCT+CGG 0.571268 4_2:+55266644 None:intergenic
TCTTTCAAGCTATTACTACA+AGG 0.573652 4_2:-55267187 Msa0608270:CDS
ACTAGCATATCATCTGGTCC+AGG 0.575933 4_2:+55272050 None:intergenic
GGTCGTCCTAAGACAATCAC+CGG 0.576068 4_2:-55266554 Msa0608270:CDS
AGCTGGAGTTGTATGTTGAG+AGG 0.576584 4_2:-55274826 Msa0608270:CDS
GCTGGAGTTGTATGTTGAGA+GGG 0.577745 4_2:-55274825 Msa0608270:CDS
ACATACACAAAATAGAAGGC+TGG 0.579470 4_2:+55267161 None:intergenic
TGGAATTGCTATGGTAGCAA+TGG 0.582283 4_2:-55267713 Msa0608270:CDS
GGCCCTTACAATGTCTGCTG+AGG 0.582711 4_2:-55274395 Msa0608270:CDS
GTAGACGTTGTTGGACAGGC+AGG 0.584047 4_2:-55266575 Msa0608270:CDS
GCTCCATGACTTCAATATCA+CGG 0.591509 4_2:+55271382 None:intergenic
TGATATGAAAGCTATTGTGT+TGG 0.593763 4_2:-55266791 Msa0608270:CDS
GCATTGGGCTTGATTTACGT+GGG 0.594648 4_2:-55268354 Msa0608270:CDS
TGTATCTGACAAGTTCAGCT+AGG 0.595489 4_2:-55273454 Msa0608270:intron
GCCCTTACAATGTCTGCTGA+GGG 0.595569 4_2:-55274394 Msa0608270:CDS
CTACAGGTGCGGATTGCCCA+AGG 0.595817 4_2:-55267071 Msa0608270:intron
TACTGATTCAGAAGTTGCAA+TGG 0.600180 4_2:-55267363 Msa0608270:intron
TCAAGAATATGCAAAACGAC+AGG 0.600683 4_2:-55273978 Msa0608270:intron
AACATTCCCAGTTCCAGCAT+AGG 0.601552 4_2:+55267907 None:intergenic
GAGGGAGATATTGGTTCATG+GGG 0.601739 4_2:-55274211 Msa0608270:CDS
ATACCGATTACTAGGTTCAG+AGG 0.603273 4_2:-55274230 Msa0608270:CDS
TCCAGCGCCTATTAGACCCA+AGG 0.605628 4_2:+55267245 None:intergenic
GTCCCCTGAAGATATATACA+AGG 0.607347 4_2:-55271355 Msa0608270:intron
TACCGATTACTAGGTTCAGA+GGG 0.611712 4_2:-55274229 Msa0608270:CDS
ATAGCAATTCCAAGGACTGC+AGG 0.612981 4_2:+55267724 None:intergenic
TGGAACTGGGAATGTTCTCA+AGG 0.617089 4_2:-55267900 Msa0608270:intron
TTGCTACCATAGCAATTCCA+AGG 0.618346 4_2:+55267716 None:intergenic
TAAAGAAGACCAAGGCCAAG+AGG 0.621416 4_2:+55268240 None:intergenic
CACAGCAGACCAAGTGCCAG+AGG 0.629366 4_2:+55267607 None:intergenic
GCCTTAAGAGTACCGTAATG+TGG 0.634211 4_2:+55274572 None:intergenic
CATGTGCCTATGCTGGAACT+GGG 0.635630 4_2:-55267913 Msa0608270:CDS
GTAATGCACCAGCAATGACA+TGG 0.635873 4_2:+55268777 None:intergenic
TGTTCACAACATCTTGACAA+AGG 0.637361 4_2:-55267763 Msa0608270:CDS
GGGTTCAGGATACTGACCCC+GGG 0.638406 4_2:-55274805 Msa0608270:CDS
CCCAGCAGCCAGGAGAACAG+GGG 0.638606 4_2:+55266514 None:intergenic
GCAGCATAATGCTGAACCAG+AGG 0.639545 4_2:-55273647 Msa0608270:intron
TATTTGATGATGTATTATTG+CGG 0.640289 4_2:-55266154 Msa0608270:three_prime_UTR
GGTAGAATGAGTCTGAAAGC+CGG 0.642327 4_2:+55266535 None:intergenic
GCTGTGTATATCAAACCCAA+AGG 0.645766 4_2:-55267590 Msa0608270:intron
CATTAACAAAAGTAGCAGCA+AGG 0.648095 4_2:+55269192 None:intergenic
TGAAGAATTAGGTGTTGAGA+TGG 0.648729 4_2:-55267689 Msa0608270:CDS
GCTCCCGAACCTAACCGCGC+CGG 0.652018 4_2:-55275059 Msa0608270:CDS
AGGTTGCTCTTGAAAGCATG+AGG 0.652603 4_2:-55274775 Msa0608270:intron
GTAACAACAGGAAAGTGTTG+AGG 0.652898 4_2:-55268002 Msa0608270:intron
AACTAAATACTGTTCAGACA+CGG 0.656708 4_2:+55266279 None:intergenic
TTACGTGGGTTCTTGCAATG+AGG 0.658349 4_2:-55268340 Msa0608270:CDS
CACCTTGTATATATCTTCAG+GGG 0.666070 4_2:+55271353 None:intergenic
TCCCTCAGCAGACATTGTAA+GGG 0.666227 4_2:+55274393 None:intergenic
GAGACTCAAACAAACCTGCA+TGG 0.668674 4_2:+55266732 None:intergenic
GCCGAGGATGTTGTTGACTG+TGG 0.669421 4_2:-55266645 Msa0608270:CDS
GGCATATTATGAAACTATGG+CGG 0.673217 4_2:-55274552 Msa0608270:CDS
GACAAAGGTGAGATGCACCA+AGG 0.682675 4_2:-55267748 Msa0608270:CDS
AAACCTGCATGGCCAAAACG+AGG 0.682882 4_2:+55266743 None:intergenic
GGTCTTGCTGACAGCATGTG+AGG 0.684340 4_2:-55271814 Msa0608270:intron
GAGCAACCTTCTGCAACCCG+GGG 0.688966 4_2:+55274789 None:intergenic
CAAGTGCCAGAGGAACTGCT+CGG 0.690748 4_2:+55267617 None:intergenic
TCCCAAGATAAAGAAGACCA+AGG 0.693423 4_2:+55268232 None:intergenic
TGTGGCCGTAGAAACTTCAG+TGG 0.696714 4_2:+55274590 None:intergenic
CTTACGGTGATAGTAAGACA+CGG 0.711897 4_2:+55266997 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GTATATTTAATATTTTTGTA+AGG - chr4_2:55267278-55267297 Msa0608270:intron 10.0%
!! ATAATTAAATTATGAGAATT+CGG + chr4_2:55268604-55268623 None:intergenic 10.0%
!! CATAATTTAATTATTAAGTA+AGG - chr4_2:55268610-55268629 Msa0608270:CDS 10.0%
!!! AACAATTATTAAAATTTTAC+AGG - chr4_2:55269289-55269308 Msa0608270:intron 10.0%
!!! TTTTCTTTATATATCATAAA+TGG - chr4_2:55270732-55270751 Msa0608270:intron 10.0%
!!! TTTTTTTTTTGTTTTTTTTG+GGG - chr4_2:55270765-55270784 Msa0608270:intron 10.0%
!! GTAAAAAAATTATAAAAAGT+AGG - chr4_2:55270996-55271015 Msa0608270:intron 10.0%
!!! ATTTTAGTTAACAATTAATT+AGG - chr4_2:55271759-55271778 Msa0608270:CDS 10.0%
!! TAAATTAAAAGGAAAAAAGT+GGG + chr4_2:55266175-55266194 None:intergenic 15.0%
!! TTAAATTAAAAGGAAAAAAG+TGG + chr4_2:55266176-55266195 None:intergenic 15.0%
!!! TATTGTATTTGTGTTTTATA+TGG - chr4_2:55267216-55267235 Msa0608270:CDS 15.0%
!!! ATTTAATATTTTTGTAAGGA+AGG - chr4_2:55267282-55267301 Msa0608270:intron 15.0%
!!! TTTAATATTTTTGTAAGGAA+GGG - chr4_2:55267283-55267302 Msa0608270:intron 15.0%
!!! AATCTTATGTTTTTTACTTA+TGG - chr4_2:55267340-55267359 Msa0608270:intron 15.0%
!! TAAAGAATGATTTATCATTA+TGG - chr4_2:55267999-55268018 Msa0608270:intron 15.0%
!! AAAAAACTTCAATAATAGAT+AGG - chr4_2:55268375-55268394 Msa0608270:CDS 15.0%
!!! TGATTTTTAATACATAATGA+AGG - chr4_2:55269098-55269117 Msa0608270:intron 15.0%
!!! TTCTATTTTTTTGTTTTGTT+TGG - chr4_2:55269240-55269259 Msa0608270:CDS 15.0%
!!! TCTATTTTTTTGTTTTGTTT+GGG - chr4_2:55269241-55269260 Msa0608270:CDS 15.0%
!!! AGTTGTTTAATTTTTGAAAA+CGG - chr4_2:55273273-55273292 Msa0608270:intron 15.0%
!! AAATACTATCAAAATGTAAA+AGG - chr4_2:55275127-55275146 Msa0608270:five_prime_UTR 15.0%
!! AATCCTCAACTATAAAATTA+GGG + chr4_2:55266623-55266642 None:intergenic 20.0%
!!! TTGTTTTTGTGTATTGAAAT+TGG - chr4_2:55266689-55266708 Msa0608270:intron 20.0%
!! TTCTATATTTAGAAATTGAG+TGG - chr4_2:55267011-55267030 Msa0608270:CDS 20.0%
!! TTGACAAAACAAACTTTAAA+AGG - chr4_2:55267884-55267903 Msa0608270:intron 20.0%
!! TAAATAACCAAATATTACGA+AGG - chr4_2:55268291-55268310 Msa0608270:CDS 20.0%
!!! TGGATTTTTTTAGTTATAAG+TGG - chr4_2:55269197-55269216 Msa0608270:CDS 20.0%
!! TTATGATTCAAATTGATGAA+AGG - chr4_2:55270138-55270157 Msa0608270:intron 20.0%
!!! GTGAATCATGTTTTATTATT+TGG - chr4_2:55270341-55270360 Msa0608270:intron 20.0%
!!! TCATGTTTTATTATTTGGTA+TGG - chr4_2:55270346-55270365 Msa0608270:intron 20.0%
!! ATGTGAAAAATTATAAGTGA+TGG + chr4_2:55270706-55270725 None:intergenic 20.0%
!!! AGAGAATTTTACATCAATTA+TGG + chr4_2:55271090-55271109 None:intergenic 20.0%
!! ATCATCATTGATCTAATTTA+TGG - chr4_2:55272446-55272465 Msa0608270:intron 20.0%
!! ACAGAAAAGGAAAAAATAAA+AGG + chr4_2:55272671-55272690 None:intergenic 20.0%
!!! TTTAATTTTTGAAAACGGTT+AGG - chr4_2:55273278-55273297 Msa0608270:intron 20.0%
!!! ATTAAAAGTCTTTGAAACTT+CGG + chr4_2:55273398-55273417 None:intergenic 20.0%
!! TACAAAAATGATAAAATGCA+GGG + chr4_2:55273811-55273830 None:intergenic 20.0%
!! ATACAAAAATGATAAAATGC+AGG + chr4_2:55273812-55273831 None:intergenic 20.0%
!! TTGTTGTAATAATTTCCAAT+CGG - chr4_2:55274486-55274505 Msa0608270:intron 20.0%
!!! AATAGTATATTACTTTTCTG+TGG + chr4_2:55274896-55274915 None:intergenic 20.0%
!!! TGAAGGTTTTGTAATTTTAA+AGG - chr4_2:55275010-55275029 Msa0608270:CDS 20.0%
!! AAATGAGAAAAACATGATTA+AGG + chr4_2:55275065-55275084 None:intergenic 20.0%
!!! TATTTGATGATGTATTATTG+CGG - chr4_2:55275214-55275233 Msa0608270:five_prime_UTR 20.0%
! TGTGAGTGTGTTAAATTAAA+AGG + chr4_2:55266186-55266205 None:intergenic 25.0%
!! TTCGAATTTTCACTCAATTT+AGG - chr4_2:55266425-55266444 Msa0608270:intron 25.0%
!! TCGAATTTTCACTCAATTTA+GGG - chr4_2:55266426-55266445 Msa0608270:intron 25.0%
!! AAACCCTAATTTTATAGTTG+AGG - chr4_2:55266617-55266636 Msa0608270:CDS 25.0%
! GAATCCTCAACTATAAAATT+AGG + chr4_2:55266624-55266643 None:intergenic 25.0%
! TGTATTGAAATTGGAAAGTA+TGG - chr4_2:55266698-55266717 Msa0608270:intron 25.0%
! TAAGGCATATTATGAAACTA+TGG - chr4_2:55266813-55266832 Msa0608270:CDS 25.0%
! TAAGTAATAGCATGGTATTA+TGG - chr4_2:55266890-55266909 Msa0608270:intron 25.0%
!! TTGCTATTGCAAATTTAGTT+TGG - chr4_2:55267487-55267506 Msa0608270:intron 25.0%
!! AATATCTCATATCCTTCTTT+TGG - chr4_2:55267766-55267785 Msa0608270:CDS 25.0%
! TATTCAGAAAGTGAACTTAA+CGG - chr4_2:55267801-55267820 Msa0608270:intron 25.0%
!!! ATGCAATCTTTTTTGTTGTT+AGG - chr4_2:55267831-55267850 Msa0608270:intron 25.0%
! TGGCCTACTTAAAAAATTAT+AGG - chr4_2:55268096-55268115 Msa0608270:intron 25.0%
!!! AGGCCTATAATTTTTTAAGT+AGG + chr4_2:55268102-55268121 None:intergenic 25.0%
! CAATTTAGTAGTAAGCATAT+TGG + chr4_2:55268232-55268251 None:intergenic 25.0%
! CAATATGCTTACTACTAAAT+TGG - chr4_2:55268230-55268249 Msa0608270:CDS 25.0%
! TAAATTGGTCAAATCTTATG+AGG - chr4_2:55268245-55268264 Msa0608270:CDS 25.0%
! AAATTGGTCAAATCTTATGA+GGG - chr4_2:55268246-55268265 Msa0608270:CDS 25.0%
! TAAATAGCTAAATCATACGA+AGG - chr4_2:55268340-55268359 Msa0608270:CDS 25.0%
!! CATGGACTATTTAGTTAAAT+AGG - chr4_2:55268426-55268445 Msa0608270:CDS 25.0%
! TAAAGAGATGAAAGTAAGAA+TGG - chr4_2:55268785-55268804 Msa0608270:CDS 25.0%
! CAATATCTGAAAATATCCTT+AGG + chr4_2:55268958-55268977 None:intergenic 25.0%
! CATAATGAAGGTTTATTAGA+TGG - chr4_2:55269110-55269129 Msa0608270:intron 25.0%
! TGAATAGTTTAAAGGTTCAT+TGG - chr4_2:55269153-55269172 Msa0608270:intron 25.0%
!!! TTTTAAGGAACACTTCTTTA+AGG + chr4_2:55269507-55269526 None:intergenic 25.0%
! CAAGTATAATTAACGAGTTT+CGG - chr4_2:55270179-55270198 Msa0608270:intron 25.0%
! AGGTCAATAAAAATTGAACT+CGG + chr4_2:55270230-55270249 None:intergenic 25.0%
!!! TATGGATGTATTAGTTTTGT+GGG - chr4_2:55270364-55270383 Msa0608270:intron 25.0%
! ATAACAAACATGAATCAACT+GGG + chr4_2:55270450-55270469 None:intergenic 25.0%
!!! GTTATGCATTTTTTGAATTC+AGG - chr4_2:55270465-55270484 Msa0608270:intron 25.0%
!!! ATTTTTTGAATTCAGGAATC+TGG - chr4_2:55270472-55270491 Msa0608270:intron 25.0%
! AATTCCATTTAGCAACAAAT+GGG + chr4_2:55270499-55270518 None:intergenic 25.0%
! AAATTCCATTTAGCAACAAA+TGG + chr4_2:55270500-55270519 None:intergenic 25.0%
!!! TCTGTTTCTGCTTATTTTAA+AGG + chr4_2:55270594-55270613 None:intergenic 25.0%
!!! TTTTTTTGGGGAAATATGAA+TGG - chr4_2:55270777-55270796 Msa0608270:intron 25.0%
!! ATTTTTCCACTAATTGATCT+AGG + chr4_2:55270864-55270883 None:intergenic 25.0%
! CAAAACATTAAATCCAATCA+AGG + chr4_2:55271163-55271182 None:intergenic 25.0%
!!! TGTTTTGTTATTAAGTTTCC+AGG - chr4_2:55271176-55271195 Msa0608270:intron 25.0%
! TCAAAAATCAAGATACGATA+CGG - chr4_2:55271442-55271461 Msa0608270:CDS 25.0%
! AAAAAAAATAAACCAGTCCT+AGG - chr4_2:55271547-55271566 Msa0608270:intron 25.0%
!!! TGAGTATATTGCTTCTTTTT+TGG + chr4_2:55271728-55271747 None:intergenic 25.0%
! CAATTAATTAGGATGTATTG+AGG - chr4_2:55271770-55271789 Msa0608270:CDS 25.0%
!!! AAACTGGCTTTTTAAAAACA+AGG - chr4_2:55272373-55272392 Msa0608270:intron 25.0%
! TTATCCCTTGTATTATAACA+GGG - chr4_2:55272499-55272518 Msa0608270:intron 25.0%
! AAAAAATAAAAGGAACTCAC+AGG + chr4_2:55272661-55272680 None:intergenic 25.0%
!! ATCTTATTTGATTCCATTGT+AGG - chr4_2:55272724-55272743 Msa0608270:intron 25.0%
!!! CTTTTTCAATAAAATCACCA+AGG + chr4_2:55272760-55272779 None:intergenic 25.0%
! AGCAATCATATTTACATTGA+TGG - chr4_2:55273061-55273080 Msa0608270:intron 25.0%
!! TCATATTTACATTGATGGAT+CGG - chr4_2:55273066-55273085 Msa0608270:intron 25.0%
! ATACTTTGCAAACGTAAATA+AGG + chr4_2:55273243-55273262 None:intergenic 25.0%
!! ATTTTAAACATAAAAGGCTG+CGG + chr4_2:55273542-55273561 None:intergenic 25.0%
!! CCAGCAATTTTAAACATAAA+AGG + chr4_2:55273548-55273567 None:intergenic 25.0%
!!! CCTTTTATGTTTAAAATTGC+TGG - chr4_2:55273545-55273564 Msa0608270:intron 25.0%
! ATAGACAACAATGATTTAAG+AGG + chr4_2:55274044-55274063 None:intergenic 25.0%
! TCTTAAATCATTGTTGTCTA+TGG - chr4_2:55274043-55274062 Msa0608270:intron 25.0%
! TGAAACATACACAAAATAGA+AGG + chr4_2:55274214-55274233 None:intergenic 25.0%
!! GCAAAATAAGGTTTAACTTA+CGG + chr4_2:55274390-55274409 None:intergenic 25.0%
!!! ATTAAGACTAGCTTCAAATA+GGG + chr4_2:55274686-55274705 None:intergenic 25.0%
!!! AATTAAGACTAGCTTCAAAT+AGG + chr4_2:55274687-55274706 None:intergenic 25.0%
! ATTACAAAACCTTCAAGAAT+TGG + chr4_2:55275005-55275024 None:intergenic 25.0%
! GAAAGATGGTTTATTAATTG+TGG - chr4_2:55275250-55275269 Msa0608270:five_prime_UTR 25.0%
TTGGAGAATTTAACAGATTG+AGG + chr4_2:55266150-55266169 None:intergenic 30.0%
CTTTGTGTTAAGTAATAGCA+TGG - chr4_2:55266882-55266901 Msa0608270:intron 30.0%
TCGATTGTGTTATAGTTTGA+TGG - chr4_2:55267057-55267076 Msa0608270:CDS 30.0%
TTGTAAACAATCGAATCACT+AGG - chr4_2:55267256-55267275 Msa0608270:CDS 30.0%
! TACTTATGGTGTCAGAAATT+TGG - chr4_2:55267354-55267373 Msa0608270:intron 30.0%
AGATAATACCTTCATGTGAA+AGG + chr4_2:55267601-55267620 None:intergenic 30.0%
AGTTCACTTTCTGAATAGTT+CGG + chr4_2:55267798-55267817 None:intergenic 30.0%
!!! TCTTTTTTGTTGTTAGGTTG+AGG - chr4_2:55267837-55267856 Msa0608270:intron 30.0%
ATATTCTCTTAAAACTCCAG+AGG + chr4_2:55267949-55267968 None:intergenic 30.0%
! GACCTATTTCTTGAATTTCT+TGG - chr4_2:55268076-55268095 Msa0608270:intron 30.0%
TTGGTTATTTAGTAGCATGT+TGG + chr4_2:55268282-55268301 None:intergenic 30.0%
GATTAAGCCTTCGTAATATT+TGG + chr4_2:55268301-55268320 None:intergenic 30.0%
TGATTTAGCTATTTAGTAGC+AGG + chr4_2:55268335-55268354 None:intergenic 30.0%
AACTTCAATAATAGATAGGC+CGG - chr4_2:55268379-55268398 Msa0608270:CDS 30.0%
TAACTAAATAGTCCATGCTA+AGG + chr4_2:55268423-55268442 None:intergenic 30.0%
! AGCCTAGCCTTTATATTAAA+CGG - chr4_2:55268465-55268484 Msa0608270:intron 30.0%
!!! TAAGGCTTTTTTAAAGCCTA+TGG + chr4_2:55268523-55268542 None:intergenic 30.0%
TAAAAAGAGATGCAGTGATT+CGG - chr4_2:55268656-55268675 Msa0608270:intron 30.0%
GGAGACTTCAAATATGATTA+AGG - chr4_2:55268806-55268825 Msa0608270:CDS 30.0%
! AGTCTTGTATCTCAACAATA+GGG + chr4_2:55268882-55268901 None:intergenic 30.0%
GATATTGTAACACTAACAAC+TGG - chr4_2:55268971-55268990 Msa0608270:CDS 30.0%
CAATATGTTTCTTTAGTTGC+TGG - chr4_2:55269028-55269047 Msa0608270:CDS 30.0%
AATTGGGGTGAATAGTTTAA+AGG - chr4_2:55269145-55269164 Msa0608270:intron 30.0%
! AAATTTTACAGGTATCTTCC+TGG - chr4_2:55269300-55269319 Msa0608270:intron 30.0%
!! TGTGATTGATTTTCTCTCTA+TGG - chr4_2:55269469-55269488 Msa0608270:intron 30.0%
!! GAACACTTCTTTAAGGTATA+TGG + chr4_2:55269500-55269519 None:intergenic 30.0%
! TTTCAAACCACAAGCTTTTA+AGG + chr4_2:55269522-55269541 None:intergenic 30.0%
! TTGACAATTGATAACACTAG+AGG - chr4_2:55269778-55269797 Msa0608270:intron 30.0%
! TGACAATTGATAACACTAGA+GGG - chr4_2:55269779-55269798 Msa0608270:intron 30.0%
GACTTAAAATTTCACTCAGA+TGG - chr4_2:55269811-55269830 Msa0608270:intron 30.0%
! ATTTCACTCAGATGGTATTT+TGG - chr4_2:55269819-55269838 Msa0608270:intron 30.0%
! TTTCACTCAGATGGTATTTT+GGG - chr4_2:55269820-55269839 Msa0608270:intron 30.0%
! ATGGTTTTTGTGATGTATTC+AGG - chr4_2:55269854-55269873 Msa0608270:intron 30.0%
! TGGTTTTTGTGATGTATTCA+GGG - chr4_2:55269855-55269874 Msa0608270:intron 30.0%
AACAATTCCAAGTTAAGTGA+AGG - chr4_2:55269948-55269967 Msa0608270:intron 30.0%
CAAATATCCTTCACTTAACT+TGG + chr4_2:55269958-55269977 None:intergenic 30.0%
! TTATATTTCAGAGCATTAGC+TGG + chr4_2:55270103-55270122 None:intergenic 30.0%
CGAAACTCGTTAATTATACT+TGG + chr4_2:55270181-55270200 None:intergenic 30.0%
TAATTAACGAGTTTCGGTTT+AGG - chr4_2:55270185-55270204 Msa0608270:intron 30.0%
GGTCAATAAAAATTGAACTC+GGG + chr4_2:55270229-55270248 None:intergenic 30.0%
! TCTGGTAATCTAAAGTTCAT+CGG + chr4_2:55270269-55270288 None:intergenic 30.0%
AAGACCAAAAAAGGATAGAT+AGG - chr4_2:55270319-55270338 Msa0608270:intron 30.0%
!!! TTCACCTATCTATCCTTTTT+TGG + chr4_2:55270326-55270345 None:intergenic 30.0%
!!! GTATGGATGTATTAGTTTTG+TGG - chr4_2:55270363-55270382 Msa0608270:intron 30.0%
CATAACAAACATGAATCAAC+TGG + chr4_2:55270451-55270470 None:intergenic 30.0%
TAAAATAAGCAGAAACAGAC+AGG - chr4_2:55270595-55270614 Msa0608270:intron 30.0%
AAAATAAGCAGAAACAGACA+GGG - chr4_2:55270596-55270615 Msa0608270:intron 30.0%
TAACGATCAAATGTGTGAAA+TGG + chr4_2:55270957-55270976 None:intergenic 30.0%
!!! TGTTGTTTTCTTTCCTTGAT+TGG - chr4_2:55271147-55271166 Msa0608270:intron 30.0%
GAGTCTGCAAATTTAATCTA+TGG - chr4_2:55271355-55271374 Msa0608270:intron 30.0%
ATATAGTATAGCACTTATGG+TGG + chr4_2:55271669-55271688 None:intergenic 30.0%
TGGATATAGTATAGCACTTA+TGG + chr4_2:55271672-55271691 None:intergenic 30.0%
AGTGCTATACTATATCCAAA+AGG - chr4_2:55271674-55271693 Msa0608270:intron 30.0%
CAATTCAGAGCAAAATATGA+GGG + chr4_2:55272086-55272105 None:intergenic 30.0%
ACAATTCAGAGCAAAATATG+AGG + chr4_2:55272087-55272106 None:intergenic 30.0%
!!! GCTCTGAATTGTTTTTTCTT+AGG - chr4_2:55272095-55272114 Msa0608270:intron 30.0%
! GTTAATGCATTTGTTAATGC+CGG - chr4_2:55272192-55272211 Msa0608270:intron 30.0%
!! CTTTTTAAAAACAAGGAGCA+TGG - chr4_2:55272380-55272399 Msa0608270:intron 30.0%
GTTATCCCTTGTATTATAAC+AGG - chr4_2:55272498-55272517 Msa0608270:intron 30.0%
CATACCCTGTTATAATACAA+GGG + chr4_2:55272506-55272525 None:intergenic 30.0%
TCATACCCTGTTATAATACA+AGG + chr4_2:55272507-55272526 None:intergenic 30.0%
! AACAGGGTATGATTTTACTA+TGG - chr4_2:55272515-55272534 Msa0608270:intron 30.0%
! ACAGGGTATGATTTTACTAT+GGG - chr4_2:55272516-55272535 Msa0608270:intron 30.0%
TGACATGGTTATCATTACTA+TGG + chr4_2:55272579-55272598 None:intergenic 30.0%
GTACATGTCATATACAGAAA+AGG + chr4_2:55272684-55272703 None:intergenic 30.0%
ACTAGAATTGGTGCAATTAT+GGG - chr4_2:55272791-55272810 Msa0608270:intron 30.0%
!! AATTTTTGAAAACGGTTAGG+AGG - chr4_2:55273281-55273300 Msa0608270:intron 30.0%
!! ATTTTTGAAAACGGTTAGGA+GGG - chr4_2:55273282-55273301 Msa0608270:intron 30.0%
ATAGTACTAACTCCATATTG+TGG - chr4_2:55273340-55273359 Msa0608270:intron 30.0%
TGTTGTTACATACCACAATA+TGG + chr4_2:55273355-55273374 None:intergenic 30.0%
ATATTGTGGTATGTAACAAC+AGG - chr4_2:55273354-55273373 Msa0608270:intron 30.0%
TTAGAACATCTTCTACAGTA+TGG - chr4_2:55273713-55273732 Msa0608270:intron 30.0%
! TCTGTCATATTTTCAGAACA+AGG + chr4_2:55273868-55273887 None:intergenic 30.0%
!! TGTTCTGAAAATATGACAGA+TGG - chr4_2:55273868-55273887 Msa0608270:intron 30.0%
! TGTTAACCCTTTATTTGATC+AGG - chr4_2:55273945-55273964 Msa0608270:intron 30.0%
CATTGACCTGATCAAATAAA+GGG + chr4_2:55273954-55273973 None:intergenic 30.0%
ACATTGACCTGATCAAATAA+AGG + chr4_2:55273955-55273974 None:intergenic 30.0%
ATTTGATCAGGTCAATGTTA+TGG - chr4_2:55273957-55273976 Msa0608270:intron 30.0%
AATCATTGTTGTCTATGGTT+TGG - chr4_2:55274048-55274067 Msa0608270:intron 30.0%
! AAACACATTTTGTATGCTAC+AGG - chr4_2:55274088-55274107 Msa0608270:intron 30.0%
TCTTTCAAGCTATTACTACA+AGG - chr4_2:55274181-55274200 Msa0608270:intron 30.0%
TAACTAAGACAAAAGCAGAT+GGG + chr4_2:55274412-55274431 None:intergenic 30.0%
TTAACTAAGACAAAAGCAGA+TGG + chr4_2:55274413-55274432 None:intergenic 30.0%
! ACGTTCCTTTCAATTTTTAC+AGG - chr4_2:55274513-55274532 Msa0608270:intron 30.0%
ACACAATAGCTTTCATATCA+AGG + chr4_2:55274577-55274596 None:intergenic 30.0%
TGATATGAAAGCTATTGTGT+TGG - chr4_2:55274577-55274596 Msa0608270:CDS 30.0%
GATATGAAAGCTATTGTGTT+GGG - chr4_2:55274578-55274597 Msa0608270:CDS 30.0%
!! TTAAGACTAGCTTCAAATAG+GGG + chr4_2:55274685-55274704 None:intergenic 30.0%
!!! GCTTGTTTTAAAGTATCACA+AGG + chr4_2:55274920-55274939 None:intergenic 30.0%
TAAAGGACAATCCAGATTAT+AGG - chr4_2:55275027-55275046 Msa0608270:CDS 30.0%
AAAGGACAATCCAGATTATA+GGG - chr4_2:55275028-55275047 Msa0608270:CDS 30.0%
AACTAAATACTGTTCAGACA+CGG + chr4_2:55275092-55275111 None:intergenic 30.0%
!! GTGTCGATTAATTTGAAAGA+TGG - chr4_2:55275236-55275255 Msa0608270:five_prime_UTR 30.0%
AAAAGGAAAAAAGTGGGACT+TGG + chr4_2:55266169-55266188 None:intergenic 35.0%
TTTCACGCTAAATCGAACTT+AGG - chr4_2:55266261-55266280 Msa0608270:three_prime_UTR 35.0%
TTCACGCTAAATCGAACTTA+GGG - chr4_2:55266262-55266281 Msa0608270:three_prime_UTR 35.0%
TGAGTGAAAATTCGAATCGA+GGG + chr4_2:55266421-55266440 None:intergenic 35.0%
TTGAGTGAAAATTCGAATCG+AGG + chr4_2:55266422-55266441 None:intergenic 35.0%
GGCATATTATGAAACTATGG+CGG - chr4_2:55266816-55266835 Msa0608270:CDS 35.0%
!! TTCGTCATTGCAGAAGTATT+TGG - chr4_2:55266931-55266950 Msa0608270:intron 35.0%
GGCTGACATATTATCAGTAT+TGG - chr4_2:55266952-55266971 Msa0608270:intron 35.0%
! AGTCTCAAATACCGATTACT+AGG - chr4_2:55267130-55267149 Msa0608270:intron 35.0%
GTGATTCGATTGTTTACAAC+AGG + chr4_2:55267255-55267274 None:intergenic 35.0%
! AAGGAAGGGTTGATTGAAAA+AGG - chr4_2:55267297-55267316 Msa0608270:intron 35.0%
TCAAGAATATGCAAAACGAC+AGG - chr4_2:55267390-55267409 Msa0608270:CDS 35.0%
AATATGCAAAACGACAGGTT+AGG - chr4_2:55267395-55267414 Msa0608270:CDS 35.0%
TACAGAAAATGCTGTAGTGA+GGG + chr4_2:55267440-55267459 None:intergenic 35.0%
ATACAGAAAATGCTGTAGTG+AGG + chr4_2:55267441-55267460 None:intergenic 35.0%
AGTTCCATGAGATCATCAAT+TGG + chr4_2:55267561-55267580 None:intergenic 35.0%
AATAGTTGCCTTTCACATGA+AGG - chr4_2:55267590-55267609 Msa0608270:intron 35.0%
GTTCACTTTCTGAATAGTTC+GGG + chr4_2:55267797-55267816 None:intergenic 35.0%
! TTGAACTTTTGCATCTTGTG+TGG - chr4_2:55268022-55268041 Msa0608270:intron 35.0%
GGCCAAGAAATTCAAGAAAT+AGG + chr4_2:55268081-55268100 None:intergenic 35.0%
TTAATATAAAGGCTAGGCTC+AGG + chr4_2:55268464-55268483 None:intergenic 35.0%
! GCCTAGCCTTTATATTAAAC+GGG - chr4_2:55268466-55268485 Msa0608270:intron 35.0%
!! AAGGTCATTTGTTATCATCC+TGG - chr4_2:55268629-55268648 Msa0608270:intron 35.0%
! TTGTTAGCTTAGCTGATACT+TGG - chr4_2:55268699-55268718 Msa0608270:intron 35.0%
GCAGCAAGAACAGTATTAAT+AGG + chr4_2:55268726-55268745 None:intergenic 35.0%
!! TATACAAGTGTCGAAGTCAT+TGG - chr4_2:55268755-55268774 Msa0608270:CDS 35.0%
!! ATACAAGTGTCGAAGTCATT+GGG - chr4_2:55268756-55268775 Msa0608270:CDS 35.0%
! GAGTCTTGTATCTCAACAAT+AGG + chr4_2:55268883-55268902 None:intergenic 35.0%
! GATTAGTTCCCTACTCAATT+AGG + chr4_2:55268911-55268930 None:intergenic 35.0%
!! ATGGAGTTTGACTTGCAATT+GGG - chr4_2:55269129-55269148 Msa0608270:intron 35.0%
GGTTCATTGGATATAGTCAT+TGG - chr4_2:55269166-55269185 Msa0608270:CDS 35.0%
AACTAAAAAAATCCAGAGCC+AGG + chr4_2:55269192-55269211 None:intergenic 35.0%
ACCAGATGATATGCTAGTAT+TGG - chr4_2:55269323-55269342 Msa0608270:intron 35.0%
TCCAATACTAGCATATCATC+TGG + chr4_2:55269327-55269346 None:intergenic 35.0%
AATGCAATTTGCAGTGCATT+TGG + chr4_2:55269387-55269406 None:intergenic 35.0%
ACTGCAAATTGCATTGTTCA+TGG - chr4_2:55269392-55269411 Msa0608270:intron 35.0%
AAGTGTTCCTTAAAAGCTTG+TGG - chr4_2:55269512-55269531 Msa0608270:intron 35.0%
! GGTTTGAAACTAACTAGTTG+CGG - chr4_2:55269533-55269552 Msa0608270:intron 35.0%
ATTCTGTGTTAGTACTTGTG+TGG - chr4_2:55269654-55269673 Msa0608270:intron 35.0%
ACAGTTACATCCATTATCAC+AGG + chr4_2:55269708-55269727 None:intergenic 35.0%
TATATATCTTCAGGGGACTT+AGG + chr4_2:55270011-55270030 None:intergenic 35.0%
CACCTTGTATATATCTTCAG+GGG + chr4_2:55270018-55270037 None:intergenic 35.0%
GCACCTTGTATATATCTTCA+GGG + chr4_2:55270019-55270038 None:intergenic 35.0%
TGCACCTTGTATATATCTTC+AGG + chr4_2:55270020-55270039 None:intergenic 35.0%
ATTGATGAAAGGAAACCAAG+TGG - chr4_2:55270149-55270168 Msa0608270:intron 35.0%
! TAATCTAAAGTTCATCGGGT+AGG + chr4_2:55270264-55270283 None:intergenic 35.0%
! CTGGTAATCTAAAGTTCATC+GGG + chr4_2:55270268-55270287 None:intergenic 35.0%
! TTGATGATTGCATGTGATTG+AGG - chr4_2:55270423-55270442 Msa0608270:intron 35.0%
AGATAGCCTAGATCAATTAG+TGG - chr4_2:55270855-55270874 Msa0608270:intron 35.0%
!!! GACATGTATTTTGAAACGGA+AGG + chr4_2:55270926-55270945 None:intergenic 35.0%
!! CAGCGACATGTATTTTGAAA+CGG + chr4_2:55270930-55270949 None:intergenic 35.0%
!! ATGCGACATGCATTTTGAAA+CGG - chr4_2:55271056-55271075 Msa0608270:intron 35.0%
CTCTACAAATAATTAGAGCC+TGG + chr4_2:55271197-55271216 None:intergenic 35.0%
! CAGGCTCTAATTATTTGTAG+AGG - chr4_2:55271195-55271214 Msa0608270:intron 35.0%
!! AGTTGTTGCTTTAGCAATGA+GGG + chr4_2:55271223-55271242 None:intergenic 35.0%
CAAGAAACATCCTGTTTAAC+AGG + chr4_2:55271258-55271277 None:intergenic 35.0%
!! TGTAACACACTGGTTTACAT+TGG - chr4_2:55271276-55271295 Msa0608270:intron 35.0%
TAAATTTGCAGACTCTACAC+AGG + chr4_2:55271350-55271369 None:intergenic 35.0%
!! ATTTTCCCGTATCGACATAT+CGG + chr4_2:55271421-55271440 None:intergenic 35.0%
! AGCACTAACAATGTTCCTTT+TGG + chr4_2:55271692-55271711 None:intergenic 35.0%
TAATTAGGATGTATTGAGGC+AGG - chr4_2:55271774-55271793 Msa0608270:CDS 35.0%
TATCGGTGCAGGATAATTAT+CGG - chr4_2:55271797-55271816 Msa0608270:CDS 35.0%
GATACTTTCCTGATACGTAT+CGG - chr4_2:55271819-55271838 Msa0608270:intron 35.0%
ATACTTTCCTGATACGTATC+GGG - chr4_2:55271820-55271839 Msa0608270:intron 35.0%
ATACTCTCCTGATACGTATT+GGG - chr4_2:55271889-55271908 Msa0608270:intron 35.0%
! TGATACGTATTGGGAAGTAT+CGG - chr4_2:55271898-55271917 Msa0608270:intron 35.0%
!!! CGTCATCCATTTTGAAGTAT+CGG - chr4_2:55271957-55271976 Msa0608270:intron 35.0%
CATTAACAAAAGTAGCAGCA+AGG + chr4_2:55272179-55272198 None:intergenic 35.0%
CACAACAGTAATTGAATGGA+AGG + chr4_2:55272300-55272319 None:intergenic 35.0%
AATGATAACCATGTCATTGC+TGG - chr4_2:55272583-55272602 Msa0608270:intron 35.0%
TTTGATTCCATTGTAGGCAA+TGG - chr4_2:55272730-55272749 Msa0608270:intron 35.0%
GAAGATAGTTCGACTAGAAT+TGG - chr4_2:55272779-55272798 Msa0608270:intron 35.0%
GACTAGAATTGGTGCAATTA+TGG - chr4_2:55272790-55272809 Msa0608270:intron 35.0%
ATTGGTGCAATTATGGGATT+AGG - chr4_2:55272797-55272816 Msa0608270:intron 35.0%
! ATCTCAACAAGGTGTTACAA+GGG + chr4_2:55272868-55272887 None:intergenic 35.0%
CTTTCAGTTACGATACAAGT+TGG - chr4_2:55272935-55272954 Msa0608270:intron 35.0%
GAAGCAGGTATTTACTTGTT+TGG - chr4_2:55273157-55273176 Msa0608270:intron 35.0%
!! TTTTTGAAAACGGTTAGGAG+GGG - chr4_2:55273283-55273302 Msa0608270:intron 35.0%
ATATGGAGTTAGTACTATGC+TGG + chr4_2:55273338-55273357 None:intergenic 35.0%
! ATGCAGGTGCAAAATCTTTT+GGG - chr4_2:55273578-55273597 Msa0608270:intron 35.0%
TGTTCACAACATCTTGACAA+AGG - chr4_2:55273605-55273624 Msa0608270:intron 35.0%
!! TGAAGAATTAGGTGTTGAGA+TGG - chr4_2:55273679-55273698 Msa0608270:intron 35.0%
GTAGAAGATGTTCTAACGAT+CGG + chr4_2:55273709-55273728 None:intergenic 35.0%
CAACTTCTGAATCAGTATCA+TGG + chr4_2:55274002-55274021 None:intergenic 35.0%
!! TACTGATTCAGAAGTTGCAA+TGG - chr4_2:55274005-55274024 Msa0608270:intron 35.0%
ACATACACAAAATAGAAGGC+TGG + chr4_2:55274210-55274229 None:intergenic 35.0%
TCAGTGAACATTGTAACAAG+CGG + chr4_2:55274263-55274282 None:intergenic 35.0%
! GATTTTCTTTTCTACGCTAC+AGG - chr4_2:55274281-55274300 Msa0608270:intron 35.0%
AAAAGCAGATGGGCAAAATA+AGG + chr4_2:55274402-55274421 None:intergenic 35.0%
CAGATGCAAACTAATTGAGT+CGG - chr4_2:55274441-55274460 Msa0608270:intron 35.0%
GCTGTCCTGTAAAAATTGAA+AGG + chr4_2:55274521-55274540 None:intergenic 35.0%
! ACCTTCAAGAATTGGTGATA+GGG + chr4_2:55274997-55275016 None:intergenic 35.0%
! AACCTTCAAGAATTGGTGAT+AGG + chr4_2:55274998-55275017 None:intergenic 35.0%
ATTGAGGTTTCTTGTTGCAG+AGG + chr4_2:55266134-55266153 None:intergenic 40.0%
!!! GCTCTCGATCTTCTTTTTTG+CGG + chr4_2:55266376-55266395 None:intergenic 40.0%
GAGTGAAAATTCGAATCGAG+GGG + chr4_2:55266420-55266439 None:intergenic 40.0%
TCATGGAGCTTGTAGAAGTA+CGG + chr4_2:55266744-55266763 None:intergenic 40.0%
AAGTTTCTACGGCCACATTA+CGG - chr4_2:55266784-55266803 Msa0608270:CDS 40.0%
! TATGGCGGAATCAGAGTTAA+AGG - chr4_2:55266831-55266850 Msa0608270:CDS 40.0%
! ATCGGTATTTGAGACTTTCC+TGG + chr4_2:55267126-55267145 None:intergenic 40.0%
! ATACCGATTACTAGGTTCAG+AGG - chr4_2:55267138-55267157 Msa0608270:intron 40.0%
! TACCGATTACTAGGTTCAGA+GGG - chr4_2:55267139-55267158 Msa0608270:intron 40.0%
!! AGAGGGAGATATTGGTTCAT+GGG - chr4_2:55267156-55267175 Msa0608270:intron 40.0%
! TATGGTGTCAGAAATTTGGC+TGG - chr4_2:55267358-55267377 Msa0608270:intron 40.0%
! TGTGCATTGATAGAGTGAAG+AGG - chr4_2:55267533-55267552 Msa0608270:intron 40.0%
ATCAAAAGATCAACAGCCTC+TGG + chr4_2:55267740-55267759 None:intergenic 40.0%
! AGAGGCTGTTGATCTTTTGA+TGG - chr4_2:55267739-55267758 Msa0608270:CDS 40.0%
GTTCGGGAAAAACCAAAAGA+AGG + chr4_2:55267781-55267800 None:intergenic 40.0%
TGTATCTGACAAGTTCAGCT+AGG - chr4_2:55267914-55267933 Msa0608270:CDS 40.0%
!! GCCTAGTCTAGCCTTTTTAA+AGG - chr4_2:55268160-55268179 Msa0608270:intron 40.0%
! GCCTTTAAAAAGGCTAGACT+AGG + chr4_2:55268164-55268183 None:intergenic 40.0%
! GCTTCACTAGGCCTTTAAAA+AGG + chr4_2:55268174-55268193 None:intergenic 40.0%
!! GTAAGCATATTGGTGTTGCA+AGG + chr4_2:55268222-55268241 None:intergenic 40.0%
AGTAGCATGTTGGTGTACTT+GGG + chr4_2:55268272-55268291 None:intergenic 40.0%
TAGTAGCATGTTGGTGTACT+TGG + chr4_2:55268273-55268292 None:intergenic 40.0%
GAAGGCTTAATCACACCAAT+AGG - chr4_2:55268309-55268328 Msa0608270:CDS 40.0%
CTATTTAGTAGCAGGCCTAT+TGG + chr4_2:55268327-55268346 None:intergenic 40.0%
AGCTAAATCATACGAAGGCA+TGG - chr4_2:55268345-55268364 Msa0608270:CDS 40.0%
! GCTAAATCATACGAAGGCAT+GGG - chr4_2:55268346-55268365 Msa0608270:CDS 40.0%
AGTCCATGCTAAGGCTTATA+AGG + chr4_2:55268414-55268433 None:intergenic 40.0%
GCCCGTTTAATATAAAGGCT+AGG + chr4_2:55268470-55268489 None:intergenic 40.0%
AGCCTTTATATTAAACGGGC+CGG - chr4_2:55268470-55268489 Msa0608270:intron 40.0%
! TTTTAAATAGGCCAGGCCAT+AGG - chr4_2:55268504-55268523 Msa0608270:intron 40.0%
!!! CTTTTTTAAAGCCTATGGCC+TGG + chr4_2:55268518-55268537 None:intergenic 40.0%
!! GCTTTAAAAAAGCCTTAGCC+TGG - chr4_2:55268526-55268545 Msa0608270:intron 40.0%
!! TGCATCTCTTTTTAGTCTCC+AGG + chr4_2:55268650-55268669 None:intergenic 40.0%
ACTCCTAGTCCTAATTGAGT+AGG - chr4_2:55268899-55268918 Msa0608270:intron 40.0%
CTCCTAGTCCTAATTGAGTA+GGG - chr4_2:55268900-55268919 Msa0608270:intron 40.0%
TTCCCTACTCAATTAGGACT+AGG + chr4_2:55268905-55268924 None:intergenic 40.0%
AACCAAGTGACAAGAACCTA+AGG - chr4_2:55268939-55268958 Msa0608270:intron 40.0%
ATCCTTAGGTTCTTGTCACT+TGG + chr4_2:55268944-55268963 None:intergenic 40.0%
TATTTGTGCCTGTGACAGAA+TGG - chr4_2:55268998-55269017 Msa0608270:CDS 40.0%
! TGTTTCTTTAGTTGCTGGCT+TGG - chr4_2:55269033-55269052 Msa0608270:CDS 40.0%
!! GATGGAGTTTGACTTGCAAT+TGG - chr4_2:55269128-55269147 Msa0608270:intron 40.0%
!! TGGAGTTTGACTTGCAATTG+GGG - chr4_2:55269130-55269149 Msa0608270:intron 40.0%
ATTGGATATAGTCATTGGCC+TGG - chr4_2:55269171-55269190 Msa0608270:CDS 40.0%
ATTGTTCATGGATAACCTGC+TGG - chr4_2:55269404-55269423 Msa0608270:intron 40.0%
CAAGTACTAACACAGAATCC+AGG + chr4_2:55269652-55269671 None:intergenic 40.0%
! CTTGTGTGGCGAATAGTTTT+TGG - chr4_2:55269668-55269687 Msa0608270:intron 40.0%
AGTTTCCTTGCCTGTGATAA+TGG - chr4_2:55269695-55269714 Msa0608270:intron 40.0%
TACATCCATTATCACAGGCA+AGG + chr4_2:55269703-55269722 None:intergenic 40.0%
!!! ATTTTGGGACTCTCTCTTGA+TGG - chr4_2:55269835-55269854 Msa0608270:intron 40.0%
!! AATCACTTTTGAGCTTGACG+AGG - chr4_2:55269878-55269897 Msa0608270:intron 40.0%
! TTTTGAGCTTGACGAGGAAA+TGG - chr4_2:55269884-55269903 Msa0608270:intron 40.0%
CTCCATGACTTCAATATCAC+GGG + chr4_2:55269988-55270007 None:intergenic 40.0%
GCTCCATGACTTCAATATCA+CGG + chr4_2:55269989-55270008 None:intergenic 40.0%
GTCCCCTGAAGATATATACA+AGG - chr4_2:55270013-55270032 Msa0608270:intron 40.0%
TATGGGAGTCATATGTAGTC+AGG + chr4_2:55270080-55270099 None:intergenic 40.0%
! TTCAGAGCATTAGCTGGTAT+GGG + chr4_2:55270097-55270116 None:intergenic 40.0%
! TTTCAGAGCATTAGCTGGTA+TGG + chr4_2:55270098-55270117 None:intergenic 40.0%
TATACTTGGACTCAACCACT+TGG + chr4_2:55270167-55270186 None:intergenic 40.0%
TCGGTTTAGGTCGAATTGAA+AGG - chr4_2:55270198-55270217 Msa0608270:intron 40.0%
CGGTTTAGGTCGAATTGAAA+GGG - chr4_2:55270199-55270218 Msa0608270:intron 40.0%
TCGGGTAGGTAATTAAAGTC+AGG + chr4_2:55270250-55270269 None:intergenic 40.0%
TGGAGGGTTAAGACCAAAAA+AGG - chr4_2:55270310-55270329 Msa0608270:intron 40.0%
! TGGACCCATTTGTTGCTAAA+TGG - chr4_2:55270492-55270511 Msa0608270:intron 40.0%
!! GTGATGGATGTCAATTTCAG+TGG + chr4_2:55270690-55270709 None:intergenic 40.0%
!!! GACATGCATTTTGAAACGGA+GGG - chr4_2:55271060-55271079 Msa0608270:intron 40.0%
!! CAGTTGTTGCTTTAGCAATG+AGG + chr4_2:55271224-55271243 None:intergenic 40.0%
GGATGTTTCTTGTAACACAC+TGG - chr4_2:55271266-55271285 Msa0608270:intron 40.0%
! GCACTTATGGTGGTCTTTTT+GGG + chr4_2:55271659-55271678 None:intergenic 40.0%
! AGCACTTATGGTGGTCTTTT+TGG + chr4_2:55271660-55271679 None:intergenic 40.0%
! TGATACGTATCGGGAAGTAT+CGG - chr4_2:55271829-55271848 Msa0608270:intron 40.0%
GATACTCTCCTGATACGTAT+TGG - chr4_2:55271888-55271907 Msa0608270:intron 40.0%
GATACTTCCCAATACGTATC+AGG + chr4_2:55271899-55271918 None:intergenic 40.0%
!! GATACGTATTGGGAAGTATC+GGG - chr4_2:55271899-55271918 Msa0608270:intron 40.0%
GAAGCTCCGATACTTCAAAA+TGG + chr4_2:55271966-55271985 None:intergenic 40.0%
!! TTGAAGTATCGGAGCTTCAT+AGG - chr4_2:55271968-55271987 Msa0608270:CDS 40.0%
TCTTAGGCACATTTGCTTGA+TGG - chr4_2:55272111-55272130 Msa0608270:intron 40.0%
! GCATTTGTTAATGCCGGATT+TGG - chr4_2:55272198-55272217 Msa0608270:intron 40.0%
TCATTGTACCTGACCAAATC+CGG + chr4_2:55272214-55272233 None:intergenic 40.0%
CCTGCACAACAGTAATTGAA+TGG + chr4_2:55272304-55272323 None:intergenic 40.0%
CCATTCAATTACTGTTGTGC+AGG - chr4_2:55272301-55272320 Msa0608270:intron 40.0%
GCATCAGATTCTTCAAGTAG+TGG - chr4_2:55272341-55272360 Msa0608270:intron 40.0%
TCTTCAAGTAGTGGTTCTTC+TGG - chr4_2:55272350-55272369 Msa0608270:intron 40.0%
!! TTACTATGGGATGTTGACTC+TGG - chr4_2:55272529-55272548 Msa0608270:intron 40.0%
GGATTAGGAATTGCATATGC+TGG - chr4_2:55272812-55272831 Msa0608270:intron 40.0%
! CATCTCAACAAGGTGTTACA+AGG + chr4_2:55272869-55272888 None:intergenic 40.0%
!! GCTTTAGGATCACTCAGAAT+AGG + chr4_2:55272963-55272982 None:intergenic 40.0%
! GCCTTGGTCTTCTTTATCTT+GGG - chr4_2:55273135-55273154 Msa0608270:intron 40.0%
TCCCAAGATAAAGAAGACCA+AGG + chr4_2:55273139-55273158 None:intergenic 40.0%
TCTTCTTTATCTTGGGAAGC+AGG - chr4_2:55273142-55273161 Msa0608270:intron 40.0%
TGTCAGTAATGCAACCACAA+TGG + chr4_2:55273219-55273238 None:intergenic 40.0%
!!! TTAGGAGGGGTTTTGCTATT+AGG - chr4_2:55273296-55273315 Msa0608270:intron 40.0%
!!! AGGGGTTTTGCTATTAGGTT+GGG - chr4_2:55273301-55273320 Msa0608270:intron 40.0%
!! GTAACAACAGGAAAGTGTTG+AGG - chr4_2:55273366-55273385 Msa0608270:intron 40.0%
! TGCGGCAGAAATCTCTATTT+TGG + chr4_2:55273524-55273543 None:intergenic 40.0%
! CATGCAGGTGCAAAATCTTT+TGG - chr4_2:55273577-55273596 Msa0608270:intron 40.0%
TTGCTACCATAGCAATTCCA+AGG + chr4_2:55273655-55273674 None:intergenic 40.0%
TGGAATTGCTATGGTAGCAA+TGG - chr4_2:55273655-55273674 Msa0608270:intron 40.0%
GTAGCAATGGCTGAAGAATT+AGG - chr4_2:55273668-55273687 Msa0608270:intron 40.0%
GCTGTGTATATCAAACCCAA+AGG - chr4_2:55273778-55273797 Msa0608270:intron 40.0%
ATCATGGCTAAGTCTGCTTA+AGG + chr4_2:55273986-55274005 None:intergenic 40.0%
GTTATCTCCTTGGGTCTAAT+AGG - chr4_2:55274116-55274135 Msa0608270:intron 40.0%
ACAAACAATGCTCGAATTGC+CGG - chr4_2:55274146-55274165 Msa0608270:intron 40.0%
TCCCAAATGTACAAGACCTT+GGG + chr4_2:55274316-55274335 None:intergenic 40.0%
TTCCCAAATGTACAAGACCT+TGG + chr4_2:55274317-55274336 None:intergenic 40.0%
! AGGTCTTGTACATTTGGGAA+AGG - chr4_2:55274317-55274336 Msa0608270:intron 40.0%
! GGTCTTGTACATTTGGGAAA+GGG - chr4_2:55274318-55274337 Msa0608270:intron 40.0%
AAGACACGGTCAGAATGATA+AGG + chr4_2:55274360-55274379 None:intergenic 40.0%
CTTACGGTGATAGTAAGACA+CGG + chr4_2:55274374-55274393 None:intergenic 40.0%
! TGTTCTCTACTTCCTCGTTT+TGG - chr4_2:55274613-55274632 Msa0608270:CDS 40.0%
! ACTAGCTTCAAATAGGGGAA+GGG + chr4_2:55274680-55274699 None:intergenic 40.0%
! CCTTCAAGAATTGGTGATAG+GGG + chr4_2:55274996-55275015 None:intergenic 40.0%
CATCACTCTTCCCTATAATC+TGG + chr4_2:55275041-55275060 None:intergenic 40.0%
AAATTCGAATCGAGGGGCTT+TGG + chr4_2:55266414-55266433 None:intergenic 45.0%
CGTGCAGTCAGATGAAGATT+TGG - chr4_2:55266507-55266526 Msa0608270:CDS 45.0%
!! TTTGGCTTTGAAGCAACAGC+TGG - chr4_2:55266525-55266544 Msa0608270:CDS 45.0%
AGCTGGAGTTGTATGTTGAG+AGG - chr4_2:55266542-55266561 Msa0608270:CDS 45.0%
GCTGGAGTTGTATGTTGAGA+GGG - chr4_2:55266543-55266562 Msa0608270:CDS 45.0%
GTTGTATGTTGAGAGGGTTC+AGG - chr4_2:55266549-55266568 Msa0608270:CDS 45.0%
! AGGTTGCTCTTGAAAGCATG+AGG - chr4_2:55266593-55266612 Msa0608270:CDS 45.0%
CGTAGAAACTTCAGTGGCTT+GGG + chr4_2:55266775-55266794 None:intergenic 45.0%
CCAAGCCACTGAAGTTTCTA+CGG - chr4_2:55266773-55266792 Msa0608270:CDS 45.0%
GCCACATTACGGTACTCTTA+AGG - chr4_2:55266795-55266814 Msa0608270:CDS 45.0%
!! GCCTTAAGAGTACCGTAATG+TGG + chr4_2:55266799-55266818 None:intergenic 45.0%
TCCCTCAGCAGACATTGTAA+GGG + chr4_2:55266978-55266997 None:intergenic 45.0%
CTCCCTCTGAACCTAGTAAT+CGG + chr4_2:55267144-55267163 None:intergenic 45.0%
CTAGGTTCAGAGGGAGATAT+TGG - chr4_2:55267148-55267167 Msa0608270:intron 45.0%
!! CAGAGGGAGATATTGGTTCA+TGG - chr4_2:55267155-55267174 Msa0608270:intron 45.0%
!! GAGGGAGATATTGGTTCATG+GGG - chr4_2:55267157-55267176 Msa0608270:intron 45.0%
CATGGGGACATGAGTATGTT+AGG - chr4_2:55267173-55267192 Msa0608270:CDS 45.0%
! GGCTGTTGATCTTTTGATGG+AGG - chr4_2:55267742-55267761 Msa0608270:CDS 45.0%
TCAGGTAATAGGCAAGGCTT+AGG + chr4_2:55268122-55268141 None:intergenic 45.0%
ATGAGCCTGTGTCAGGTAAT+AGG + chr4_2:55268133-55268152 None:intergenic 45.0%
CTTAGAAATGAGCCTGTGTC+AGG + chr4_2:55268140-55268159 None:intergenic 45.0%
CTGACACAGGCTCATTTCTA+AGG - chr4_2:55268138-55268157 Msa0608270:intron 45.0%
ATAGGCTTTCAGGCTTCACT+AGG + chr4_2:55268186-55268205 None:intergenic 45.0%
TCGGTGTGAAATAGGCTTTC+AGG + chr4_2:55268196-55268215 None:intergenic 45.0%
GAAAGCCTATTTCACACCGA+AGG - chr4_2:55268196-55268215 Msa0608270:intron 45.0%
!! TATTGGTGTTGCAAGGCCTT+CGG + chr4_2:55268215-55268234 None:intergenic 45.0%
TAATAGATAGGCCGGCCTAA+CGG - chr4_2:55268387-55268406 Msa0608270:CDS 45.0%
TAAGGCTTATAAGGCCCGTT+AGG + chr4_2:55268405-55268424 None:intergenic 45.0%
GCCTTTATATTAAACGGGCC+GGG - chr4_2:55268471-55268490 Msa0608270:intron 45.0%
ACCCGGCCCGTTTAATATAA+AGG + chr4_2:55268475-55268494 None:intergenic 45.0%
! ATTTAAAACCGAGCTCGACC+CGG + chr4_2:55268492-55268511 None:intergenic 45.0%
!!! GGTCGAGCTCGGTTTTAAAT+AGG - chr4_2:55268492-55268511 Msa0608270:intron 45.0%
!!! AGCTCGGTTTTAAATAGGCC+AGG - chr4_2:55268497-55268516 Msa0608270:intron 45.0%
ACACACACACACTCTCTTAG+GGG + chr4_2:55268562-55268581 None:intergenic 45.0%
CACACACACACACTCTCTTA+GGG + chr4_2:55268563-55268582 None:intergenic 45.0%
ACACACACACACACTCTCTT+AGG + chr4_2:55268564-55268583 None:intergenic 45.0%
!! ATGCAGTGATTCGGTGCTTT+AGG - chr4_2:55268665-55268684 Msa0608270:intron 45.0%
GTTTCAGTCCATTCTGTCAC+AGG + chr4_2:55269009-55269028 None:intergenic 45.0%
ACTAGCATATCATCTGGTCC+AGG + chr4_2:55269321-55269340 None:intergenic 45.0%
CACAGAATCCAGGACTTACA+TGG + chr4_2:55269642-55269661 None:intergenic 45.0%
!!! TGTGGCGAATAGTTTTTGGC+TGG - chr4_2:55269672-55269691 Msa0608270:intron 45.0%
TGCCCGTGATATTGAAGTCA+TGG - chr4_2:55269983-55270002 Msa0608270:intron 45.0%
TAAGCAGAAACAGACAGGGT+TGG - chr4_2:55270600-55270619 Msa0608270:intron 45.0%
!!! CGACATGCATTTTGAAACGG+AGG - chr4_2:55271059-55271078 Msa0608270:intron 45.0%
CTAAAGCAACAACTGTCTCG+AGG - chr4_2:55271229-55271248 Msa0608270:intron 45.0%
AACTTTGTGCAACCTGCTGA+AGG - chr4_2:55271322-55271341 Msa0608270:intron 45.0%
CAGTATCGTATCTCGTATCC+GGG + chr4_2:55271396-55271415 None:intergenic 45.0%
GCAGTATCGTATCTCGTATC+CGG + chr4_2:55271397-55271416 None:intergenic 45.0%
! ACTGCACCGATATGTCGATA+CGG - chr4_2:55271412-55271431 Msa0608270:CDS 45.0%
TGTTGATGTGCTACAAGCCT+AGG + chr4_2:55271567-55271586 None:intergenic 45.0%
GGATGTATTGAGGCAGGTAT+CGG - chr4_2:55271780-55271799 Msa0608270:CDS 45.0%
GATACTTCCCGATACGTATC+AGG + chr4_2:55271830-55271849 None:intergenic 45.0%
! TGTTAATGCCGGATTTGGTC+AGG - chr4_2:55272203-55272222 Msa0608270:intron 45.0%
! GTAGTGGTTCTTCTGGAAAC+TGG - chr4_2:55272357-55272376 Msa0608270:intron 45.0%
GTAATGCACCAGCAATGACA+TGG + chr4_2:55272594-55272613 None:intergenic 45.0%
TGTCATTGCTGGTGCATTAC+TGG - chr4_2:55272594-55272613 Msa0608270:intron 45.0%
GTCATTGCTGGTGCATTACT+GGG - chr4_2:55272595-55272614 Msa0608270:intron 45.0%
AAACCTCACCTGCTCATTCT+GGG + chr4_2:55272840-55272859 None:intergenic 45.0%
AAAACCTCACCTGCTCATTC+TGG + chr4_2:55272841-55272860 None:intergenic 45.0%
AAGCGACAAGCATCTCAACA+AGG + chr4_2:55272879-55272898 None:intergenic 45.0%
ATCACGTCAAGCGAAGCTTT+AGG + chr4_2:55272978-55272997 None:intergenic 45.0%
TGCCTTCACTGCAATTGCAT+TGG - chr4_2:55272998-55273017 Msa0608270:intron 45.0%
GCCTTCACTGCAATTGCATT+GGG - chr4_2:55272999-55273018 Msa0608270:intron 45.0%
TGCATTGGGCTTGATTTACG+TGG - chr4_2:55273013-55273032 Msa0608270:intron 45.0%
GCATTGGGCTTGATTTACGT+GGG - chr4_2:55273014-55273033 Msa0608270:intron 45.0%
TTACGTGGGTTCTTGCAATG+AGG - chr4_2:55273028-55273047 Msa0608270:intron 45.0%
AAAGAAGACCAAGGCCAAGA+GGG + chr4_2:55273130-55273149 None:intergenic 45.0%
TAAAGAAGACCAAGGCCAAG+AGG + chr4_2:55273131-55273150 None:intergenic 45.0%
! GGCCTTGGTCTTCTTTATCT+TGG - chr4_2:55273134-55273153 Msa0608270:intron 45.0%
!!! GAGGGGTTTTGCTATTAGGT+TGG - chr4_2:55273300-55273319 Msa0608270:intron 45.0%
CTACTATCATGTGCCTATGC+TGG - chr4_2:55273448-55273467 Msa0608270:intron 45.0%
AACATTCCCAGTTCCAGCAT+AGG + chr4_2:55273464-55273483 None:intergenic 45.0%
TGGAACTGGGAATGTTCTCA+AGG - chr4_2:55273468-55273487 Msa0608270:CDS 45.0%
TGCTGGTGCTTATTTCATGC+AGG - chr4_2:55273562-55273581 Msa0608270:intron 45.0%
ATAGCAATTCCAAGGACTGC+AGG + chr4_2:55273647-55273666 None:intergenic 45.0%
TGCAGTCCTTGGAATTGCTA+TGG - chr4_2:55273646-55273665 Msa0608270:CDS 45.0%
ATGCAGGGTTGCAAACCTTT+GGG + chr4_2:55273796-55273815 None:intergenic 45.0%
AATGCAGGGTTGCAAACCTT+TGG + chr4_2:55273797-55273816 None:intergenic 45.0%
TGAAAGATTGCGAAGCATGC+CGG + chr4_2:55274168-55274187 None:intergenic 45.0%
! TCTTTTCTACGCTACAGGTG+CGG - chr4_2:55274286-55274305 Msa0608270:intron 45.0%
! TGCCCAAGGTCTTGTACATT+TGG - chr4_2:55274311-55274330 Msa0608270:intron 45.0%
! GCCCAAGGTCTTGTACATTT+GGG - chr4_2:55274312-55274331 Msa0608270:intron 45.0%
GAAAGGAACGTAATGCCGAT+TGG + chr4_2:55274504-55274523 None:intergenic 45.0%
GAGACTCAAACAAACCTGCA+TGG + chr4_2:55274639-55274658 None:intergenic 45.0%
!! GACTAGCTTCAAATAGGGGA+AGG + chr4_2:55274681-55274700 None:intergenic 45.0%
ATACTCTGTTGTAACAGCCG+AGG - chr4_2:55274707-55274726 Msa0608270:intron 45.0%
TCCACAGTCAACAACATCCT+CGG + chr4_2:55274727-55274746 None:intergenic 45.0%
! GATGTTGTTGACTGTGGATG+AGG - chr4_2:55274729-55274748 Msa0608270:intron 45.0%
TGAAAGCCGGTGATTGTCTT+AGG + chr4_2:55274823-55274842 None:intergenic 45.0%
GGTAGAATGAGTCTGAAAGC+CGG + chr4_2:55274836-55274855 None:intergenic 45.0%
CCCCTATCACCAATTCTTGA+AGG - chr4_2:55274993-55275012 Msa0608270:CDS 45.0%
!! AATTAAAATTAGTAAAAAAT+TGG + chr4_2:55267697-55267716 None:intergenic 5.0%
!!! TTTTTTTTTTTTGTTTTTTT+TGG - chr4_2:55270763-55270782 Msa0608270:intron 5.0%
!!! TTTTTTTTTTTGTTTTTTTT+GGG - chr4_2:55270764-55270783 Msa0608270:intron 5.0%
!! TAAAAAAATTATAAAAAGTA+GGG - chr4_2:55270997-55271016 Msa0608270:intron 5.0%
!! ATATTTGTATATTAAAAAAA+TGG + chr4_2:55271521-55271540 None:intergenic 5.0%
!! AAAAAATAAAATTTAATCTT+TGG - chr4_2:55271866-55271885 Msa0608270:intron 5.0%
!! TCTCGCGAGTTGAGTTTTGC+TGG + chr4_2:55266209-55266228 None:intergenic 50.0%
TCACACTTCCTCTTCTCCGA+TGG - chr4_2:55266287-55266306 Msa0608270:three_prime_UTR 50.0%
! TTTTGCGGCAGCTTCGTCTT+TGG + chr4_2:55266361-55266380 None:intergenic 50.0%
GAAGATCGAGAGCGAAGATC+TGG - chr4_2:55266383-55266402 Msa0608270:CDS 50.0%
AAGAGCAACCTTCTGCAACC+CGG + chr4_2:55266584-55266603 None:intergenic 50.0%
CCGTAGAAACTTCAGTGGCT+TGG + chr4_2:55266776-55266795 None:intergenic 50.0%
TGTGGCCGTAGAAACTTCAG+TGG + chr4_2:55266781-55266800 None:intergenic 50.0%
GCCCTTACAATGTCTGCTGA+GGG - chr4_2:55266974-55266993 Msa0608270:intron 50.0%
CTCCCTCAGCAGACATTGTA+AGG + chr4_2:55266979-55266998 None:intergenic 50.0%
CAATGTCTGCTGAGGGAGAA+CGG - chr4_2:55266981-55267000 Msa0608270:intron 50.0%
AATGTCTGCTGAGGGAGAAC+GGG - chr4_2:55266982-55267001 Msa0608270:intron 50.0%
ACTTTGCCAATGACTCTGCC+AGG - chr4_2:55267105-55267124 Msa0608270:intron 50.0%
GACTTTCCTGGCAGAGTCAT+TGG + chr4_2:55267114-55267133 None:intergenic 50.0%
! GGCGCCAATTGATGATCTCA+TGG - chr4_2:55267554-55267573 Msa0608270:intron 50.0%
GCAGCATAATGCTGAACCAG+AGG - chr4_2:55267721-55267740 Msa0608270:CDS 50.0%
AGCTAGGTAAGTCAGACCTC+TGG - chr4_2:55267930-55267949 Msa0608270:CDS 50.0%
CCTGTGTCAGGTAATAGGCA+AGG + chr4_2:55268128-55268147 None:intergenic 50.0%
CCTTGCCTATTACCTGACAC+AGG - chr4_2:55268125-55268144 Msa0608270:intron 50.0%
! CAAGGCCTTCGGTGTGAAAT+AGG + chr4_2:55268204-55268223 None:intergenic 50.0%
AATAGATAGGCCGGCCTAAC+GGG - chr4_2:55268388-55268407 Msa0608270:CDS 50.0%
! GGGCCTTATAAGCCTTAGCA+TGG - chr4_2:55268408-55268427 Msa0608270:CDS 50.0%
ACACACACTCTCTTAGGGGT+GGG + chr4_2:55268558-55268577 None:intergenic 50.0%
! TATAGTCATTGGCCTGGCTC+TGG - chr4_2:55269177-55269196 Msa0608270:CDS 50.0%
!! CGAAGAACGAGAAGTGTTGC+AGG - chr4_2:55269917-55269936 Msa0608270:intron 50.0%
! ACCAGAGTCCTTTTTCCTGC+CGG - chr4_2:55270283-55270302 Msa0608270:intron 50.0%
! CTCGAGGCATCCTGTTAAAC+AGG - chr4_2:55271245-55271264 Msa0608270:intron 50.0%
TCTACACAGGTTCCTTCAGC+AGG + chr4_2:55271337-55271356 None:intergenic 50.0%
! CTGCACCGATATGTCGATAC+GGG - chr4_2:55271413-55271432 Msa0608270:CDS 50.0%
ATGTGCTACAAGCCTAGGAC+TGG + chr4_2:55271562-55271581 None:intergenic 50.0%
!! GGGAAGTATCGGGCAAGTAT+CGG - chr4_2:55271909-55271928 Msa0608270:intron 50.0%
GGGCAGAAGCAAATCAACAG+AGG + chr4_2:55272066-55272085 None:intergenic 50.0%
TGCTGCTGCAAGTCTGGTAT+GGG - chr4_2:55272412-55272431 Msa0608270:intron 50.0%
!! AGGAGTGCCATTGCCTACAA+TGG + chr4_2:55272740-55272759 None:intergenic 50.0%
TTGTAGGCAATGGCACTCCT+TGG - chr4_2:55272740-55272759 Msa0608270:intron 50.0%
GCCCAATGCAATTGCAGTGA+AGG + chr4_2:55273003-55273022 None:intergenic 50.0%
GATCGGAGTGAGTCAGAGTT+GGG - chr4_2:55273083-55273102 Msa0608270:intron 50.0%
TTTGGCACTCCCACCATACT+AGG - chr4_2:55273175-55273194 Msa0608270:intron 50.0%
TCATGTGCCTATGCTGGAAC+TGG - chr4_2:55273454-55273473 Msa0608270:intron 50.0%
CATGTGCCTATGCTGGAACT+GGG - chr4_2:55273455-55273474 Msa0608270:CDS 50.0%
GACAAAGGTGAGATGCACCA+AGG - chr4_2:55273620-55273639 Msa0608270:intron 50.0%
ACAGGCAGCAGTTATCTCCT+TGG - chr4_2:55274106-55274125 Msa0608270:intron 50.0%
CAGGCAGCAGTTATCTCCTT+GGG - chr4_2:55274107-55274126 Msa0608270:intron 50.0%
! TTTTACAGGACAGCGCTTGC+AGG - chr4_2:55274527-55274546 Msa0608270:intron 50.0%
AAACCTGCATGGCCAAAACG+AGG + chr4_2:55274628-55274647 None:intergenic 50.0%
AGCCTCTATCAGTGCCTGTT+CGG - chr4_2:55274758-55274777 Msa0608270:intron 50.0%
GTCCAACAACGTCTACTGCT+TGG + chr4_2:55274789-55274808 None:intergenic 50.0%
AGCAGTAGACGTTGTTGGAC+AGG - chr4_2:55274789-55274808 Msa0608270:CDS 50.0%
GGTCGTCCTAAGACAATCAC+CGG - chr4_2:55274814-55274833 Msa0608270:CDS 50.0%
TCATTCTACCCCTGTTCTCC+TGG - chr4_2:55274846-55274865 Msa0608270:CDS 50.0%
AGGGTTCAGGATACTGACCC+CGG - chr4_2:55266562-55266581 Msa0608270:CDS 55.0%
AGAGCAACCTTCTGCAACCC+GGG + chr4_2:55266583-55266602 None:intergenic 55.0%
!! TGGCTTGGGCACTGAAGTCA+TGG + chr4_2:55266761-55266780 None:intergenic 55.0%
GGCCCTTACAATGTCTGCTG+AGG - chr4_2:55266973-55266992 Msa0608270:intron 55.0%
GCTTATAAGGCCCGTTAGGC+CGG + chr4_2:55268401-55268420 None:intergenic 55.0%
GGTGGGAATAGTCCAGGCTA+AGG + chr4_2:55268541-55268560 None:intergenic 55.0%
CTTAGGGGTGGGAATAGTCC+AGG + chr4_2:55268547-55268566 None:intergenic 55.0%
CACACACACTCTCTTAGGGG+TGG + chr4_2:55268559-55268578 None:intergenic 55.0%
ATAACCTGCTGGTGCGACAC+TGG - chr4_2:55269415-55269434 Msa0608270:intron 55.0%
AATTCCAGTGTCGCACCAGC+AGG + chr4_2:55269422-55269441 None:intergenic 55.0%
GGTCTTGCTGACAGCATGTG+AGG - chr4_2:55269554-55269573 Msa0608270:intron 55.0%
CTTGCACGCCATGTAAGTCC+TGG - chr4_2:55269631-55269650 Msa0608270:intron 55.0%
! CCAGAGTCCTTTTTCCTGCC+GGG - chr4_2:55270284-55270303 Msa0608270:intron 55.0%
! TCCTTTTTCCTGCCGGGTAC+TGG - chr4_2:55270290-55270309 Msa0608270:intron 55.0%
TCCAGTACCCGGCAGGAAAA+AGG + chr4_2:55270294-55270313 None:intergenic 55.0%
!!! TTTTTCCTGCCGGGTACTGG+AGG - chr4_2:55270293-55270312 Msa0608270:intron 55.0%
!!! TTTTCCTGCCGGGTACTGGA+GGG - chr4_2:55270294-55270313 Msa0608270:intron 55.0%
GGTCTTAACCCTCCAGTACC+CGG + chr4_2:55270305-55270324 None:intergenic 55.0%
TGGTTGTGCTCTGTGAAGCC+CGG - chr4_2:55271375-55271394 Msa0608270:CDS 55.0%
!! ATTGAGGCAGGTATCGGTGC+AGG - chr4_2:55271786-55271805 Msa0608270:CDS 55.0%
!! TATCGGGCAAGTATCGGTGC+AGG - chr4_2:55271915-55271934 Msa0608270:intron 55.0%
!! AGTATCGGTGCAGGATACGC+AGG - chr4_2:55271924-55271943 Msa0608270:intron 55.0%
! GTATCGGTGCAGGATACGCA+GGG - chr4_2:55271925-55271944 Msa0608270:intron 55.0%
TATCGGTGCAGGATACGCAG+GGG - chr4_2:55271926-55271945 Msa0608270:intron 55.0%
CACTTGCACCAGCACTTGCA+CGG + chr4_2:55272137-55272156 None:intergenic 55.0%
! GACTAGTGCTGCTGCAAGTC+TGG - chr4_2:55272406-55272425 Msa0608270:intron 55.0%
! GTGCTGCTGCAAGTCTGGTA+TGG - chr4_2:55272411-55272430 Msa0608270:intron 55.0%
GCTGGTGCATTACTGGGAGT+TGG - chr4_2:55272601-55272620 Msa0608270:intron 55.0%
!! TGCTGGTTCCCAGAATGAGC+AGG - chr4_2:55272829-55272848 Msa0608270:intron 55.0%
GTTCCCAGAATGAGCAGGTG+AGG - chr4_2:55272834-55272853 Msa0608270:intron 55.0%
GGATCGGAGTGAGTCAGAGT+TGG - chr4_2:55273082-55273101 Msa0608270:intron 55.0%
AGAGGGAGAAGTCGCGTAAG+AGG + chr4_2:55273113-55273132 None:intergenic 55.0%
CTTACGCGACTTCTCCCTCT+TGG - chr4_2:55273113-55273132 Msa0608270:intron 55.0%
ACTCCCACCATACTAGGTCC+AGG - chr4_2:55273181-55273200 Msa0608270:intron 55.0%
CTCCCACCATACTAGGTCCA+GGG - chr4_2:55273182-55273201 Msa0608270:intron 55.0%
TGCCCTGGACCTAGTATGGT+GGG + chr4_2:55273187-55273206 None:intergenic 55.0%
ACCATACTAGGTCCAGGGCA+GGG - chr4_2:55273187-55273206 Msa0608270:intron 55.0%
TTCCAAGGACTGCAGGACCT+TGG + chr4_2:55273640-55273659 None:intergenic 55.0%
TATTCGCCGAGCAGTTCCTC+TGG - chr4_2:55273745-55273764 Msa0608270:intron 55.0%
CAAGTGCCAGAGGAACTGCT+CGG + chr4_2:55273754-55273773 None:intergenic 55.0%
TCCTTGGGTCTAATAGGCGC+TGG - chr4_2:55274122-55274141 Msa0608270:intron 55.0%
TCCAGCGCCTATTAGACCCA+AGG + chr4_2:55274126-55274145 None:intergenic 55.0%
!! CTTCCTCGTTTTGGCCATGC+AGG - chr4_2:55274622-55274641 Msa0608270:CDS 55.0%
! GCCGAGGATGTTGTTGACTG+TGG - chr4_2:55274723-55274742 Msa0608270:intron 55.0%
GCCTCTATCAGTGCCTGTTC+GGG - chr4_2:55274759-55274778 Msa0608270:intron 55.0%
!! ACCCGAACAGGCACTGATAG+AGG + chr4_2:55274763-55274782 None:intergenic 55.0%
CTATCAGTGCCTGTTCGGGT+TGG - chr4_2:55274763-55274782 Msa0608270:intron 55.0%
GGCCAAGCAGTAGACGTTGT+TGG - chr4_2:55274784-55274803 Msa0608270:CDS 55.0%
GTAGACGTTGTTGGACAGGC+AGG - chr4_2:55274793-55274812 Msa0608270:CDS 55.0%
TTCGGGAGCCATCGGAGAAG+AGG + chr4_2:55266298-55266317 None:intergenic 60.0%
CGGTTAGGTTCGGGAGCCAT+CGG + chr4_2:55266306-55266325 None:intergenic 60.0%
TGCGGCAGCTTCGTCTTTGG+CGG + chr4_2:55266358-55266377 None:intergenic 60.0%
GGGTTCAGGATACTGACCCC+GGG - chr4_2:55266563-55266582 Msa0608270:CDS 60.0%
TACTGACCCCGGGTTGCAGA+AGG - chr4_2:55266573-55266592 Msa0608270:CDS 60.0%
GAGCAACCTTCTGCAACCCG+GGG + chr4_2:55266582-55266601 None:intergenic 60.0%
CCCGGCAGGAAAAAGGACTC+TGG + chr4_2:55270287-55270306 None:intergenic 60.0%
TTAACCCTCCAGTACCCGGC+AGG + chr4_2:55270301-55270320 None:intergenic 60.0%
! CTTGATGGCCGTGCAAGTGC+TGG - chr4_2:55272126-55272145 Msa0608270:intron 60.0%
CGACTTCTCCCTCTTGGCCT+TGG - chr4_2:55273119-55273138 Msa0608270:intron 60.0%
CTGCCCTGGACCTAGTATGG+TGG + chr4_2:55273188-55273207 None:intergenic 60.0%
CACCATACTAGGTCCAGGGC+AGG - chr4_2:55273186-55273205 Msa0608270:intron 60.0%
ACCCTGCCCTGGACCTAGTA+TGG + chr4_2:55273191-55273210 None:intergenic 60.0%
TACTAGGTCCAGGGCAGGGT+TGG - chr4_2:55273191-55273210 Msa0608270:intron 60.0%
CAATGGATCCAACCCTGCCC+TGG + chr4_2:55273202-55273221 None:intergenic 60.0%
GGGCAGGGTTGGATCCATTG+TGG - chr4_2:55273202-55273221 Msa0608270:intron 60.0%
CACCAAGGTCCTGCAGTCCT+TGG - chr4_2:55273635-55273654 Msa0608270:CDS 60.0%
CGAGCAGTTCCTCTGGCACT+TGG - chr4_2:55273752-55273771 Msa0608270:intron 60.0%
CACAGCAGACCAAGTGCCAG+AGG + chr4_2:55273764-55273783 None:intergenic 60.0%
! CTACAGGTGCGGATTGCCCA+AGG - chr4_2:55274297-55274316 Msa0608270:intron 60.0%
AGGGGAAGGGAGACAGAGAG+AGG + chr4_2:55274667-55274686 None:intergenic 60.0%
ACTGCTTGGCCAACCCGAAC+AGG + chr4_2:55274775-55274794 None:intergenic 60.0%
TTCTCCTGGCTGCTGGGGAT+AGG - chr4_2:55274860-55274879 Msa0608270:intron 60.0%
TCTCCTGGCTGCTGGGGATA+GGG - chr4_2:55274861-55274880 Msa0608270:intron 60.0%
TTGCCGGCGCGGTTAGGTTC+GGG + chr4_2:55266315-55266334 None:intergenic 65.0%
GTTGCCGGCGCGGTTAGGTT+CGG + chr4_2:55266316-55266335 None:intergenic 65.0%
! GAACCTAACCGCGCCGGCAA+CGG - chr4_2:55266315-55266334 Msa0608270:exon 65.0%
!! TTCGTCTTTGGCGGTGCCGC+TGG + chr4_2:55266349-55266368 None:intergenic 65.0%
TAAACGGGCCGGGTCGAGCT+CGG - chr4_2:55268481-55268500 Msa0608270:intron 65.0%
ACCCCTGTTCTCCTGGCTGC+TGG - chr4_2:55274853-55274872 Msa0608270:CDS 65.0%
CCCAGCAGCCAGGAGAACAG+GGG + chr4_2:55274857-55274876 None:intergenic 65.0%
CCCCTGTTCTCCTGGCTGCT+GGG - chr4_2:55274854-55274873 Msa0608270:CDS 65.0%
CCCCAGCAGCCAGGAGAACA+GGG + chr4_2:55274858-55274877 None:intergenic 65.0%
CCCTGTTCTCCTGGCTGCTG+GGG - chr4_2:55274855-55274874 Msa0608270:CDS 65.0%
TCCCCAGCAGCCAGGAGAAC+AGG + chr4_2:55274859-55274878 None:intergenic 65.0%
GCTCCCGAACCTAACCGCGC+CGG - chr4_2:55266309-55266328 Msa0608270:three_prime_UTR 70.0%
!! TTTGGCGGTGCCGCTGGTGC+TGG + chr4_2:55266343-55266362 None:intergenic 70.0%
CTGCCCTATCCCCAGCAGCC+AGG + chr4_2:55274867-55274886 None:intergenic 70.0%
!! GCTGGTGCTGGCGCCGTTGC+CGG + chr4_2:55266331-55266350 None:intergenic 75.0%
GGCAACGGCGCCAGCACCAG+CGG - chr4_2:55266330-55266349 Msa0608270:exon 75.0%
! GCGCCGTTGCCGGCGCGGTT+AGG + chr4_2:55266321-55266340 None:intergenic 80.0%
! TGCTGGCGCCGTTGCCGGCG+CGG + chr4_2:55266326-55266345 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_2 gene 55266115 55275275 55266115 ID=Msa0608270;Name=Msa0608270
chr4_2 mRNA 55266115 55275275 55266115 ID=Msa0608270-mRNA-1;Parent=Msa0608270;Name=Msa0608270-mRNA-1;_AED=0.09;_eAED=0.09;_QI=191|0.95|1|1|0.95|1|24|217|864
chr4_2 exon 55266115 55266404 55266115 ID=Msa0608270-mRNA-1:exon:14043;Parent=Msa0608270-mRNA-1
chr4_2 exon 55266488 55266666 55266488 ID=Msa0608270-mRNA-1:exon:14042;Parent=Msa0608270-mRNA-1
chr4_2 exon 55266747 55266855 55266747 ID=Msa0608270-mRNA-1:exon:14041;Parent=Msa0608270-mRNA-1
chr4_2 exon 55267002 55267087 55267002 ID=Msa0608270-mRNA-1:exon:14040;Parent=Msa0608270-mRNA-1
chr4_2 exon 55267167 55267280 55267167 ID=Msa0608270-mRNA-1:exon:14039;Parent=Msa0608270-mRNA-1
chr4_2 exon 55267364 55267423 55267364 ID=Msa0608270-mRNA-1:exon:14038;Parent=Msa0608270-mRNA-1
chr4_2 exon 55267591 55267806 55267591 ID=Msa0608270-mRNA-1:exon:14037;Parent=Msa0608270-mRNA-1
chr4_2 exon 55267901 55268014 55267901 ID=Msa0608270-mRNA-1:exon:14036;Parent=Msa0608270-mRNA-1
chr4_2 exon 55268227 55268448 55268227 ID=Msa0608270-mRNA-1:exon:14035;Parent=Msa0608270-mRNA-1
chr4_2 exon 55268540 55268644 55268540 ID=Msa0608270-mRNA-1:exon:14034;Parent=Msa0608270-mRNA-1
chr4_2 exon 55268730 55268870 55268730 ID=Msa0608270-mRNA-1:exon:14033;Parent=Msa0608270-mRNA-1
chr4_2 exon 55268963 55269067 55268963 ID=Msa0608270-mRNA-1:exon:14032;Parent=Msa0608270-mRNA-1
chr4_2 exon 55269166 55269273 55269166 ID=Msa0608270-mRNA-1:exon:14031;Parent=Msa0608270-mRNA-1
chr4_2 exon 55271356 55271514 55271356 ID=Msa0608270-mRNA-1:exon:14030;Parent=Msa0608270-mRNA-1
chr4_2 exon 55271748 55271822 55271748 ID=Msa0608270-mRNA-1:exon:14029;Parent=Msa0608270-mRNA-1
chr4_2 exon 55271965 55272079 55271965 ID=Msa0608270-mRNA-1:exon:14028;Parent=Msa0608270-mRNA-1
chr4_2 exon 55273455 55273537 55273455 ID=Msa0608270-mRNA-1:exon:14027;Parent=Msa0608270-mRNA-1
chr4_2 exon 55273627 55273665 55273627 ID=Msa0608270-mRNA-1:exon:14026;Parent=Msa0608270-mRNA-1
chr4_2 exon 55273979 55274021 55273979 ID=Msa0608270-mRNA-1:exon:14025;Parent=Msa0608270-mRNA-1
chr4_2 exon 55274196 55274263 55274196 ID=Msa0608270-mRNA-1:exon:14024;Parent=Msa0608270-mRNA-1
chr4_2 exon 55274387 55274446 55274387 ID=Msa0608270-mRNA-1:exon:14023;Parent=Msa0608270-mRNA-1
chr4_2 exon 55274538 55274658 55274538 ID=Msa0608270-mRNA-1:exon:14022;Parent=Msa0608270-mRNA-1
chr4_2 exon 55274776 55274876 55274776 ID=Msa0608270-mRNA-1:exon:14021;Parent=Msa0608270-mRNA-1
chr4_2 exon 55274986 55275275 55274986 ID=Msa0608270-mRNA-1:exon:14020;Parent=Msa0608270-mRNA-1
chr4_2 five_prime_UTR 55275085 55275275 55275085 ID=Msa0608270-mRNA-1:five_prime_utr;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55274986 55275084 55274986 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55274776 55274876 55274776 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55274538 55274658 55274538 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55274387 55274446 55274387 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55274196 55274263 55274196 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55273979 55274021 55273979 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55273627 55273665 55273627 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55273455 55273537 55273455 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55271965 55272079 55271965 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55271748 55271822 55271748 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55271356 55271514 55271356 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55269166 55269273 55269166 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55268963 55269067 55268963 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55268730 55268870 55268730 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55268540 55268644 55268540 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55268227 55268448 55268227 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55267901 55268014 55267901 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55267591 55267806 55267591 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55267364 55267423 55267364 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55267167 55267280 55267167 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55267002 55267087 55267002 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55266747 55266855 55266747 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55266488 55266666 55266488 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 CDS 55266332 55266404 55266332 ID=Msa0608270-mRNA-1:cds;Parent=Msa0608270-mRNA-1
chr4_2 three_prime_UTR 55266115 55266331 55266115 ID=Msa0608270-mRNA-1:three_prime_utr;Parent=Msa0608270-mRNA-1
Gene Sequence

>Msa0608270

ATGGCTCCCGAACCTAACCGCGCCGGCAACGGCGCCAGCACCAGCGGCACCGCCAAAGACGAAGCTGCCGCAAAAAAGAAGATCGAGAGCGAAGATCTGTCAGATGAAGATTTGGCTTTGAAGCAACAGCTGGAGTTGTATGTTGAGAGGGTTCAGGATACTGACCCCGGGTTGCAGAAGGTTGCTCTTGAAAGCATGAGACAAGAAATCCGTACTTCTACAAGCTCCATGACTTCAGTGCCCAAGCCACTGAAGTTTCTACGGCCACATTACGGTACTCTTAAGGCATATTATGAAACTATGGCGGAATCAGAGTTAAAGAAGTATTTGGCTGACATATTATCAGTATTGGCCCTTACAATGTCTGCTGAGGGAGAACGGGAAAGTCTCAAATACCGATTACTAGGTTCAGAGGGAGATATTGGTTCATGGGGACATGAGTATGTTAGAAATTTGGCTGGAGAAATTGCTCAAGAATATGCAAAACGACAGCATAATGCTGAACCAGAGGCTGTTGATCTTTTGATGGAGGTTGAGGACTTAGATATGTTGACTGAGCATGTTGACAAAACAAACTTTAAAAGGACTTGCTTGTATCTGACAAGTTCAGCTAGGTATCTTCCTGGACCAGATGATATGCTAGTATTGGACATTGCATTTTCAATCTATCTAAAATTTGAAGAATTTCCAAATGCACTGCAAATTGCATTGTTCATGGATAACCTGCTGCATGTGAGGACAGTGTTCACTTCTTGTCATGATGTGCTGCGAAAGAAGCAATTCTGTTACATACTTGCACGCCATGGAATCACTTTTGAGCTTGACGAGGAAATGGTTAACGATGACGAAGAACGAGAAGTGTTGCAGGATATCATCAACAATTCCAAGTTAAGTGAAGGATATTTGACTCTTGCCCGTGATATTGAAGTCATGGAGCCTAAGTCCCCTGAAGATATATACAAGGCACATTTGCTTGATGGCCGTGCAAGTGCTGGTGCAAGTGTTGACTCAGCTAGACAGAACCTTGCTGCTACTTTTGTTAATGCATTTGTTAATGCCGGATTTGGTCAGGATAAGTTAATGACTGTTGCATCAGATTCTTCAAGTAGTGGTTCTTCTGGAAACTGGCTTTTTAAAAACAAGGAGCATGGAAAGACTAGTGCTGCTGCAAGTCTGGGTATGATTTTACTATGGGATGTTGACTCTGGACTTGCACAACTTGACAAATACTTCCATAGTAATGATAACCATGTCATTGCTGGTGCATTACTGGGAGTTGGAATTGTCAATTGTAGTATCAAGAATGACTGTGATCCTGCAATGGCACTCCTTGGTGATTTTATTGAAAAAGAAGATAGTTCGACTAGAATTGGTGCAATTATGGGATTAGGAATTGCATATGCTGGTTCCCAGAATGAGCAGTTACGATACAAGTTGGCACCTATTCTGAGTGATCCTAAAGCTTCGCTTGACGTGATTGCCTTCACTGCAATTGCATTGGGCTTGATTTACGTGGGTTCTTGCAATGAGGAAGTTGCTCAAGCAATCATATTTACATTGATGGATCGGAGTGAGTCAGAGTTGGGAGAGCCTCTTACGCGACTTCTCCCTCTTGGCCTTGGTCTTCTTTATCTTGGGAAGCAGGAAAGTGTTGAGGCAACTGCCGAAGTTTCAAAGACTTTTAATGAAAAAATAAGAAAGTATTGTGACATGACACTACTATCATGTGCCTATGCTGGAACTGGGAATGTTCTCAAGGTGCAAAATCTTTTGGGTCATTGTTCACAACATCTTGACAAAGGTGAGATGCACCAAGGTCCTGCAGTCCTTGGAATTGCTATGGTAGCAATGGCTGAAGAATTAGGTGTTGAGATGGCTATCCGATCGTTAGAACATCTTCTACAGTATGGAGAGCAGAATATTCGCCGAGCAGTTCCTCTGGCACTTGGTCTGCTGTGTATATCAAACCCAAAGGTCAATGTTATGGATACCTTAAGCAGACTTAGCCATGATACTGATTCAGAAGTTGCAATGGCAGCAGTTATCTCCTTGGGTCTAATAGGCGCTGGAACAAACAATGCTCGAATTGCCGGCATGCTTCGCAATCTTTCAAGCTATTACTACAAGGATACCAGCCTTCTATTTTGTGTGCGGATTGCCCAAGGTCTTGTACATTTGGGAAAGGGACTATTAACACTTAATCCTTATCATTCTGACCGTGTCTTACTATCACCGACAGCGCTTGCAGGACTAATTACTATGTTGCATGCATGCCTTGATATGAAAGCTATTGTGTTGGGAAAATATCACTATGTTCTCTACTTCCTCGTTTTGGCCATGCAGCCGAGGATGTTGTTGACTGTGGATGAGGACTTGAAGCCTCTATCAGTGCCTGTTCGGGTTGGCCAAGCAGTAGACGTTGTTGGACAGGCAGGTCGTCCTAAGACAATCACCGGCTTTCAGACTCATTCTACCCCTGTTCTCCTGGCTGCTGGGGATAGGGCAGAGCTAGCCACAGAAAAATATCTTCCCCTATCACCAATTCTTGAAGGTTTTGTAATTTTAAAGGACAATCCAGATTATAGGGAAGAGTGA
Protein sequence

>Msa0608270

MAPEPNRAGNGASTSGTAKDEAAAKKKIESEDLSDEDLALKQQLELYVERVQDTDPGLQKVALESMRQEIRTSTSSMTSVPKPLKFLRPHYGTLKAYYETMAESELKKYLADILSVLALTMSAEGERESLKYRLLGSEGDIGSWGHEYVRNLAGEIAQEYAKRQHNAEPEAVDLLMEVEDLDMLTEHVDKTNFKRTCLYLTSSARYLPGPDDMLVLDIAFSIYLKFEEFPNALQIALFMDNLLHVRTVFTSCHDVLRKKQFCYILARHGITFELDEEMVNDDEEREVLQDIINNSKLSEGYLTLARDIEVMEPKSPEDIYKAHLLDGRASAGASVDSARQNLAATFVNAFVNAGFGQDKLMTVASDSSSSGSSGNWLFKNKEHGKTSAAASLGMILLWDVDSGLAQLDKYFHSNDNHVIAGALLGVGIVNCSIKNDCDPAMALLGDFIEKEDSSTRIGAIMGLGIAYAGSQNEQLRYKLAPILSDPKASLDVIAFTAIALGLIYVGSCNEEVAQAIIFTLMDRSESELGEPLTRLLPLGLGLLYLGKQESVEATAEVSKTFNEKIRKYCDMTLLSCAYAGTGNVLKVQNLLGHCSQHLDKGEMHQGPAVLGIAMVAMAEELGVEMAIRSLEHLLQYGEQNIRRAVPLALGLLCISNPKVNVMDTLSRLSHDTDSEVAMAAVISLGLIGAGTNNARIAGMLRNLSSYYYKDTSLLFCVRIAQGLVHLGKGLLTLNPYHSDRVLLSPTALAGLITMLHACLDMKAIVLGKYHYVLYFLVLAMQPRMLLTVDEDLKPLSVPVRVGQAVDVVGQAGRPKTITGFQTHSTPVLLAAGDRAELATEKYLPLSPILEGFVILKDNPDYREE*