AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0779260


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0779260 MtrunA17_Chr5g0435251 99.346 153 1 0 1 153 1 153 5.46e-112 314
Msa0779260 MtrunA17_Chr5g0435261 59.615 156 60 3 1 153 1 156 6.96e-57 175
Msa0779260 MtrunA17_Chr8g0350031 40.645 155 77 4 1 151 1 144 1.05e-36 123
Msa0779260 MtrunA17_Chr8g0350021 41.290 155 76 5 1 151 1 144 2.96e-36 122
Msa0779260 MtrunA17_Chr8g0348941 34.043 141 92 1 1 140 1 141 4.80e-24 92.4
Msa0779260 MtrunA17_Chr1g0147471 52.857 70 28 2 25 94 1 65 1.98e-19 77.0
Msa0779260 MtrunA17_Chr7g0246521 49.123 57 25 1 25 81 1 53 1.35e-13 62.0
Msa0779260 MtrunA17_Chr5g0393481 28.571 105 71 1 6 110 15 115 1.65e-12 62.8
Msa0779260 MtrunA17_Chr5g0393541 25.385 130 86 2 6 135 11 129 3.14e-11 59.7
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0779260 AT3G55470.2 49.020 153 77 1 1 152 1 153 2.17e-53 166
Msa0779260 AT3G55470.1 49.351 154 76 2 1 152 1 154 5.05e-52 162
Msa0779260 AT1G63220.1 39.355 155 80 4 1 152 1 144 1.89e-29 105
Msa0779260 AT4G00467.2 35.036 137 81 3 1 133 1 133 4.41e-23 90.1
Msa0779260 AT4G00467.1 35.036 137 81 3 1 133 1 133 7.08e-23 90.1
Msa0779260 AT1G63220.2 34.839 155 73 5 1 152 1 130 4.08e-20 80.9
Msa0779260 AT4G34150.1 33.333 96 60 2 5 100 11 102 1.61e-13 66.2
Msa0779260 AT3G07940.1 34.021 97 58 3 3 99 228 318 3.91e-11 60.1

Find 53 sgRNAs with CRISPR-Local

Find 210 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CTTGGACCAATTTGAAATTT+TGG 0.108727 5_2:+60434141 Msa0779260:three_prime_UTR
TCACCCGTAATTTATATTCT+TGG 0.210448 5_2:+60434123 Msa0779260:intron
TGGGTTCATGGAGGTGCTTC+TGG 0.298453 5_2:+60430914 Msa0779260:CDS
TTTGGTTTGGTTAGTATAGA+AGG 0.320106 5_2:-60430751 None:intergenic
ATGATTCCAAAATTTCAAAT+TGG 0.339588 5_2:-60434147 None:intergenic
AGTGATAGAGAGATGACAAT+TGG 0.341487 5_2:+60430894 Msa0779260:intron
AATCAGAAAATGATAGTTTC+AGG 0.346385 5_2:-60433835 None:intergenic
CTTCAAGAGACTGATATCTT+TGG 0.365687 5_2:+60430951 Msa0779260:CDS
TGTGCTGCAGATGTTGGATT+TGG 0.367300 5_2:+60433616 Msa0779260:three_prime_UTR
AGAGATGACAATTGGGTTCA+TGG 0.369657 5_2:+60430902 Msa0779260:exon
TGGTCCAAGAATATAAATTA+CGG 0.371864 5_2:-60434127 None:intergenic
AAAGAGAAGTTACTTTGGTT+TGG 0.376114 5_2:-60430764 None:intergenic
GAATTTGAAATCTCTTCTAA+TGG 0.386320 5_2:+60433686 Msa0779260:three_prime_UTR
AATCTATGTAAAGGATCTAT+TGG 0.391697 5_2:+60433091 Msa0779260:CDS
TTAATCATATGAGCATTAAC+TGG 0.403333 5_2:+60433791 Msa0779260:three_prime_UTR
CACAAGAGCAGTGTAGTTCA+TGG 0.424916 5_2:+60431180 Msa0779260:CDS
GGTCCAAGAATATAAATTAC+GGG 0.432627 5_2:-60434126 None:intergenic
TTGTATTGGTCACCTGATCC+AGG 0.448750 5_2:-60432597 None:intergenic
AAATGAAAGAGAAGTTACTT+TGG 0.464961 5_2:-60430769 None:intergenic
CAAGCTCAATCTTAAAATCA+TGG 0.468524 5_2:+60432617 Msa0779260:CDS
TTCTTTGTTGATAGCTCGCA+TGG 0.469488 5_2:+60431122 Msa0779260:intron
GTGATAGAGAGATGACAATT+GGG 0.495442 5_2:+60430895 Msa0779260:intron
ATGTTCTCTTACAATACAAA+AGG 0.507230 5_2:+60431151 Msa0779260:CDS
AGAGTGGAATACCCTGGATC+AGG 0.509095 5_2:+60432585 Msa0779260:CDS
CTCACTTTCTCTCTCAAAGG+TGG 0.512907 5_2:-60430797 None:intergenic
CTCACCGCAATAAGAATTGT+CGG 0.513296 5_2:-60433174 None:intergenic
TTGTATTGTAAGAGAACATA+CGG 0.514214 5_2:-60431147 None:intergenic
TATTGCGGTGAGCTCGAAGT+TGG 0.527463 5_2:+60433185 Msa0779260:CDS
ACAAATTTCTCATTCCATAC+CGG 0.530096 5_2:-60432558 None:intergenic
TCTCTCACTTTCTCTCTCAA+AGG 0.530356 5_2:-60430800 None:intergenic
TTTGAAATCTCTTCTAATGG+TGG 0.534629 5_2:+60433689 Msa0779260:three_prime_UTR
TTGGCAGAAGGAGCAGAGAA+TGG 0.534847 5_2:+60433110 Msa0779260:CDS
GTTCATTGTGCTGCAGATGT+TGG 0.536549 5_2:+60433610 Msa0779260:exon
GTGCTTCTGGTGAAAGCAAA+GGG 0.538178 5_2:+60430927 Msa0779260:CDS
CGTGTCCAGAATCTATGTAA+AGG 0.538764 5_2:+60433082 Msa0779260:intron
GAATATACTGACGATGACAT+TGG 0.554722 5_2:+60433563 Msa0779260:CDS
CAATCTTAAAATCATGGACA+AGG 0.579708 5_2:+60432623 Msa0779260:CDS
CGATGACATTGGAGGATGGA+GGG 0.582080 5_2:+60433574 Msa0779260:CDS
TGAGAAATTTGTATTCAGAG+TGG 0.587344 5_2:+60432569 Msa0779260:CDS
GGTGCTTCTGGTGAAAGCAA+AGG 0.600631 5_2:+60430926 Msa0779260:CDS
CGAGCCGACAATTCTTATTG+CGG 0.603237 5_2:+60433170 Msa0779260:CDS
TGGTATAACTTACACTCGAA+AGG 0.604600 5_2:+60433205 Msa0779260:CDS
TGCAGATGTTGGATTTGGAA+TGG 0.606800 5_2:+60433621 Msa0779260:three_prime_UTR
GGCCTGACCAACAAAATCAT+CGG 0.607539 5_2:-60432658 None:intergenic
GTAAAGGATCTATTGGCAGA+AGG 0.610328 5_2:+60433098 Msa0779260:CDS
TGTATTGGTCACCTGATCCA+GGG 0.614439 5_2:-60432596 None:intergenic
ACGATGACATTGGAGGATGG+AGG 0.616751 5_2:+60433573 Msa0779260:CDS
GTATTCAGAGTGGAATACCC+TGG 0.618075 5_2:+60432579 Msa0779260:CDS
CTGACGATGACATTGGAGGA+TGG 0.621959 5_2:+60433570 Msa0779260:CDS
CGAACCACACTATACTTGCG+AGG 0.665447 5_2:-60433149 None:intergenic
TCGTCCTCGCAAGTATAGTG+TGG 0.665568 5_2:+60433145 Msa0779260:CDS
TATACTGACGATGACATTGG+AGG 0.665915 5_2:+60433566 Msa0779260:CDS
GATGACAATTGGGTTCATGG+AGG 0.736317 5_2:+60430905 Msa0779260:exon

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAATTGTAAAATCATAAATA+GGG - chr5_2:60433327-60433346 None:intergenic 10.0%
!! ATAATTGTAAAATCATAAAT+AGG - chr5_2:60433328-60433347 None:intergenic 10.0%
!! AACATTGATAAAATTAGAAA+GGG - chr5_2:60430994-60431013 None:intergenic 15.0%
!! AAACATTGATAAAATTAGAA+AGG - chr5_2:60430995-60431014 None:intergenic 15.0%
!! TATGAAATAAAAACAATCAA+TGG - chr5_2:60431609-60431628 None:intergenic 15.0%
!!! TTAGCATTTGAATTTTTTTA+TGG - chr5_2:60432451-60432470 None:intergenic 15.0%
!!! TTTTTTTTTATTTGCTTAAC+TGG + chr5_2:60432504-60432523 Msa0779260:intron 15.0%
!!! AATTCCATTTATTTTCTAAA+TGG - chr5_2:60433954-60433973 None:intergenic 15.0%
!!! CATAAATTAAGTTTTGTAAG+TGG + chr5_2:60431625-60431644 Msa0779260:intron 20.0%
!! GAAATCAAAAAGAAAAAGAA+AGG - chr5_2:60431890-60431909 None:intergenic 20.0%
!!! TTTTTCTTTTTGATTTCTTG+TGG + chr5_2:60431893-60431912 Msa0779260:intron 20.0%
!!! TTGTAGTGAAATTTTATCTA+AGG - chr5_2:60432479-60432498 None:intergenic 20.0%
!!! GCATTTTTTAATTGGTTAAT+CGG - chr5_2:60432745-60432764 None:intergenic 20.0%
!!! ATGAAACTGCATTTTTTAAT+TGG - chr5_2:60432753-60432772 None:intergenic 20.0%
!! TGTAATTGACAATGAAAATT+AGG - chr5_2:60433455-60433474 None:intergenic 20.0%
!!! ATTTTCATTGTCAATTACAT+TGG + chr5_2:60433456-60433475 Msa0779260:intron 20.0%
!! AATATTCTCTCAGTAATTTA+TGG + chr5_2:60433915-60433934 Msa0779260:intron 20.0%
!! ATATTCTCTCAGTAATTTAT+GGG + chr5_2:60433916-60433935 Msa0779260:intron 20.0%
!! ATAAATGGAATTATGCAATT+TGG + chr5_2:60433962-60433981 Msa0779260:intron 20.0%
!! AAGTCAAAAGTAATTAATCA+TGG - chr5_2:60434041-60434060 None:intergenic 20.0%
!! ATGATTCCAAAATTTCAAAT+TGG - chr5_2:60434150-60434169 None:intergenic 20.0%
!! ACACGTTTTTGTCATATTAT+CGG + chr5_2:60430697-60430716 Msa0779260:five_prime_UTR 25.0%
! AAATGAAAGAGAAGTTACTT+TGG - chr5_2:60430772-60430791 None:intergenic 25.0%
! TTGTATTGTAAGAGAACATA+CGG - chr5_2:60431150-60431169 None:intergenic 25.0%
! ATGTTCTCTTACAATACAAA+AGG + chr5_2:60431151-60431170 Msa0779260:CDS 25.0%
!!! GACATGAAATGTTTACTTTT+TGG + chr5_2:60431245-60431264 Msa0779260:intron 25.0%
! TGATATTGAAAGAGTGAAAT+GGG + chr5_2:60431788-60431807 Msa0779260:intron 25.0%
!!! AGATTTGTTAGGTTTAATCT+AGG + chr5_2:60431814-60431833 Msa0779260:intron 25.0%
!!! GATTTGTTAGGTTTAATCTA+GGG + chr5_2:60431815-60431834 Msa0779260:intron 25.0%
!! ATTTGTTAGGTTTAATCTAG+GGG + chr5_2:60431816-60431835 Msa0779260:intron 25.0%
!! TTAAGGAATTGAACATTTTG+TGG + chr5_2:60431962-60431981 Msa0779260:intron 25.0%
! AAATTGTTTCATTCATGAAC+AGG - chr5_2:60432084-60432103 None:intergenic 25.0%
! TTCCACAATATGTAATTTGA+AGG + chr5_2:60432338-60432357 Msa0779260:intron 25.0%
! ATCCTTCAAATTACATATTG+TGG - chr5_2:60432343-60432362 None:intergenic 25.0%
!!! TTTTAAGATTGAGCTTGTAT+TGG - chr5_2:60432614-60432633 None:intergenic 25.0%
!!! ATTTTAATCAATCATGACTC+TGG - chr5_2:60432995-60433014 None:intergenic 25.0%
! TTGACCTGATAATTGATAAA+GGG + chr5_2:60433049-60433068 Msa0779260:intron 25.0%
! ATTACCCTTTATCAATTATC+AGG - chr5_2:60433056-60433075 None:intergenic 25.0%
! AATCTATGTAAAGGATCTAT+TGG + chr5_2:60433091-60433110 Msa0779260:CDS 25.0%
!!! AAAAGTCACATTTTTTCCAA+TGG - chr5_2:60433284-60433303 None:intergenic 25.0%
! TTATGATATGTATGCATTCA+CGG + chr5_2:60433390-60433409 Msa0779260:intron 25.0%
! TACTAAACATAAGTTTGGTT+TGG - chr5_2:60433506-60433525 None:intergenic 25.0%
! GACAATACTAAACATAAGTT+TGG - chr5_2:60433511-60433530 None:intergenic 25.0%
!! GAATTTGAAATCTCTTCTAA+TGG + chr5_2:60433686-60433705 Msa0779260:three_prime_UTR 25.0%
! TTAATCATATGAGCATTAAC+TGG + chr5_2:60433791-60433810 Msa0779260:three_prime_UTR 25.0%
! AATCAGAAAATGATAGTTTC+AGG - chr5_2:60433838-60433857 None:intergenic 25.0%
!! TGAAACTATCATTTTCTGAT+TGG + chr5_2:60433837-60433856 Msa0779260:three_prime_UTR 25.0%
! TTACATAGATGATTTCAAAG+TGG - chr5_2:60433889-60433908 None:intergenic 25.0%
!!! CTTTGAAATCATCTATGTAA+TGG + chr5_2:60433889-60433908 Msa0779260:intron 25.0%
!!! CATTTATTTTCTAAATGGAG+AGG - chr5_2:60433949-60433968 None:intergenic 25.0%
! CTCTCCATTTAGAAAATAAA+TGG + chr5_2:60433947-60433966 Msa0779260:intron 25.0%
! TAGACAGATAAAATAAGTAG+TGG + chr5_2:60433992-60434011 Msa0779260:intron 25.0%
! AGACAGATAAAATAAGTAGT+GGG + chr5_2:60433993-60434012 Msa0779260:intron 25.0%
! CAAAAGTAATTAATCATGGT+GGG - chr5_2:60434037-60434056 None:intergenic 25.0%
! TCAAAAGTAATTAATCATGG+TGG - chr5_2:60434038-60434057 None:intergenic 25.0%
! TGGTCCAAGAATATAAATTA+CGG - chr5_2:60434130-60434149 None:intergenic 25.0%
!! TTTGGTTTGGTTAGTATAGA+AGG - chr5_2:60430754-60430773 None:intergenic 30.0%
! AAAGAGAAGTTACTTTGGTT+TGG - chr5_2:60430767-60430786 None:intergenic 30.0%
CATGCAATGTCTTTCTAATA+TGG + chr5_2:60431016-60431035 Msa0779260:intron 30.0%
!!! TGGTGTTTTATTTTTCCTCT+TGG + chr5_2:60431036-60431055 Msa0779260:intron 30.0%
AGATCAGAATATAAACCAAG+AGG - chr5_2:60431054-60431073 None:intergenic 30.0%
! AACACAAACACACACAATTT+TGG - chr5_2:60431314-60431333 None:intergenic 30.0%
ATTGTGTGTGTTTGTGTTTA+TGG + chr5_2:60431316-60431335 Msa0779260:intron 30.0%
TGGTATCTTAAACCTTTGTT+AGG + chr5_2:60431336-60431355 Msa0779260:intron 30.0%
TTAATCAATTGCCTTGTGTT+TGG + chr5_2:60431392-60431411 Msa0779260:intron 30.0%
TTATGTAGTTCATGATTCGA+CGG + chr5_2:60431658-60431677 Msa0779260:intron 30.0%
TCTTGAACCAATTTAACTAG+TGG - chr5_2:60431689-60431708 None:intergenic 30.0%
GTGATATTGAAAGAGTGAAA+TGG + chr5_2:60431787-60431806 Msa0779260:intron 30.0%
TTTGTTAGGTTTAATCTAGG+GGG + chr5_2:60431817-60431836 Msa0779260:intron 30.0%
AAAAGAAAAAGAAAGGCAGA+AGG - chr5_2:60431883-60431902 None:intergenic 30.0%
!!! TTCTTTTTGATTTCTTGTGG+AGG + chr5_2:60431896-60431915 Msa0779260:intron 30.0%
TTGAATGTATCCACATACAT+CGG + chr5_2:60432254-60432273 Msa0779260:intron 30.0%
ATTACATATTGTGGAACAGT+TGG - chr5_2:60432334-60432353 None:intergenic 30.0%
TCAAAGTTACATACATGCAA+TGG + chr5_2:60432362-60432381 Msa0779260:intron 30.0%
!!! AAGCAGACGTTTATTTTTAC+TGG - chr5_2:60432389-60432408 None:intergenic 30.0%
ACAAATTTCTCATTCCATAC+CGG - chr5_2:60432561-60432580 None:intergenic 30.0%
TGAGAAATTTGTATTCAGAG+TGG + chr5_2:60432569-60432588 Msa0779260:CDS 30.0%
CAAGCTCAATCTTAAAATCA+TGG + chr5_2:60432617-60432636 Msa0779260:CDS 30.0%
CAATCTTAAAATCATGGACA+AGG + chr5_2:60432623-60432642 Msa0779260:CDS 30.0%
! TTTTCTTCCGATGATTTTGT+TGG + chr5_2:60432651-60432670 Msa0779260:CDS 30.0%
! ATGACTGATGCAATTAGTTT+AGG - chr5_2:60432704-60432723 None:intergenic 30.0%
! TATTTTTCGTGATCTGTGAT+TGG + chr5_2:60432912-60432931 Msa0779260:intron 30.0%
AACACTGCATCTATGAATAA+GGG + chr5_2:60432936-60432955 Msa0779260:intron 30.0%
ACAAAAAACCCTAAATGAGT+AGG + chr5_2:60432961-60432980 Msa0779260:intron 30.0%
TGTAATGTCCTACTCATTTA+GGG - chr5_2:60432972-60432991 None:intergenic 30.0%
CTTGACCTGATAATTGATAA+AGG + chr5_2:60433048-60433067 Msa0779260:intron 30.0%
TAGATCCTTTACATAGATTC+TGG - chr5_2:60433090-60433109 None:intergenic 30.0%
!! TTACTTGTTATGCAAACCAT+TGG + chr5_2:60433265-60433284 Msa0779260:intron 30.0%
AGTATTGTCTCTAATGTTCT+TGG + chr5_2:60433522-60433541 Msa0779260:intron 30.0%
! TTTGAAATCTCTTCTAATGG+TGG + chr5_2:60433689-60433708 Msa0779260:three_prime_UTR 30.0%
ATAGATGATTTCAAAGTGGA+TGG - chr5_2:60433885-60433904 None:intergenic 30.0%
GAAATGGAGAGGATAATAAA+TGG + chr5_2:60434091-60434110 Msa0779260:intron 30.0%
TCACCCGTAATTTATATTCT+TGG + chr5_2:60434123-60434142 Msa0779260:intron 30.0%
GGTCCAAGAATATAAATTAC+GGG - chr5_2:60434129-60434148 None:intergenic 30.0%
!! CTTGGACCAATTTGAAATTT+TGG + chr5_2:60434141-60434160 Msa0779260:three_prime_UTR 30.0%
AGTGATAGAGAGATGACAAT+TGG + chr5_2:60430894-60430913 Msa0779260:intron 35.0%
GTGATAGAGAGATGACAATT+GGG + chr5_2:60430895-60430914 Msa0779260:intron 35.0%
CTTCAAGAGACTGATATCTT+TGG + chr5_2:60430951-60430970 Msa0779260:CDS 35.0%
CATTTGCATGTAAATCTGAG+AGG - chr5_2:60431079-60431098 None:intergenic 35.0%
TTCTCTATCTCTCCTAACAA+AGG - chr5_2:60431351-60431370 None:intergenic 35.0%
AGTAAGTTAATCTTCCCTGA+CGG + chr5_2:60431710-60431729 Msa0779260:intron 35.0%
! GAAATGGGAAGAGATTTGTT+AGG + chr5_2:60431803-60431822 Msa0779260:intron 35.0%
!!! TTTTTGATTTCTTGTGGAGG+AGG + chr5_2:60431899-60431918 Msa0779260:intron 35.0%
!!! TTTTGATTTCTTGTGGAGGA+GGG + chr5_2:60431900-60431919 Msa0779260:intron 35.0%
! ATCTGAGACTATCACACAAA+AGG + chr5_2:60432006-60432025 Msa0779260:intron 35.0%
! TCTGAGACTATCACACAAAA+GGG + chr5_2:60432007-60432026 Msa0779260:intron 35.0%
TTTATCCATGTGTGACAACT+GGG - chr5_2:60432037-60432056 None:intergenic 35.0%
ATTTATCCATGTGTGACAAC+TGG - chr5_2:60432038-60432057 None:intergenic 35.0%
CCACTTCATAATGAAATGTG+TGG - chr5_2:60432061-60432080 None:intergenic 35.0%
CCACACATTTCATTATGAAG+TGG + chr5_2:60432058-60432077 Msa0779260:intron 35.0%
TTCACATCTCCTTGAAAAAG+CGG - chr5_2:60432134-60432153 None:intergenic 35.0%
! TGTTTTGTCAGTGCTTCATA+AGG - chr5_2:60432176-60432195 None:intergenic 35.0%
TAATATGACACCGATGTATG+TGG - chr5_2:60432267-60432286 None:intergenic 35.0%
AGTTGGAAAAGGAAGAAGAA+AGG - chr5_2:60432317-60432336 None:intergenic 35.0%
TATTGTGGAACAGTTGGAAA+AGG - chr5_2:60432328-60432347 None:intergenic 35.0%
GCTAGTATCTTTATCAACAG+TGG + chr5_2:60432413-60432432 Msa0779260:intron 35.0%
GAAGCAATTGAAGTCTTACA+CGG - chr5_2:60432682-60432701 None:intergenic 35.0%
CAACACTGCATCTATGAATA+AGG + chr5_2:60432935-60432954 Msa0779260:intron 35.0%
GTGTAATGTCCTACTCATTT+AGG - chr5_2:60432973-60432992 None:intergenic 35.0%
TTTACATAGATTCTGGACAC+GGG - chr5_2:60433083-60433102 None:intergenic 35.0%
CTTTACATAGATTCTGGACA+CGG - chr5_2:60433084-60433103 None:intergenic 35.0%
TGGTATAACTTACACTCGAA+AGG + chr5_2:60433205-60433224 Msa0779260:CDS 35.0%
! TCATGCACTACATATTGACT+AGG - chr5_2:60433365-60433384 None:intergenic 35.0%
ATGTTCTTGGAATTCATCAC+AGG + chr5_2:60433535-60433554 Msa0779260:intron 35.0%
GAATATACTGACGATGACAT+TGG + chr5_2:60433563-60433582 Msa0779260:CDS 35.0%
TGTGTCTTTATCTCTCCAAA+TGG + chr5_2:60434066-60434085 Msa0779260:intron 35.0%
ATCTCTCCAAATGGTAGAAA+TGG + chr5_2:60434075-60434094 Msa0779260:intron 35.0%
TCTCTCACTTTCTCTCTCAA+AGG - chr5_2:60430803-60430822 None:intergenic 40.0%
AGAGATGACAATTGGGTTCA+TGG + chr5_2:60430902-60430921 Msa0779260:exon 40.0%
!! TTCTTTGTTGATAGCTCGCA+TGG + chr5_2:60431122-60431141 Msa0779260:intron 40.0%
TGTTTCGTTGACCAAACACA+AGG - chr5_2:60431406-60431425 None:intergenic 40.0%
CGAAACAAAGACATCGAACA+CGG + chr5_2:60431419-60431438 Msa0779260:intron 40.0%
AGTGTTTGACATCGACACAT+GGG + chr5_2:60431525-60431544 Msa0779260:intron 40.0%
GGTTACGAAACATGTGTTGA+AGG + chr5_2:60431546-60431565 Msa0779260:intron 40.0%
GGTGGAACCACTAGTTAAAT+TGG + chr5_2:60431679-60431698 Msa0779260:intron 40.0%
GTAAGTTAATCTTCCCTGAC+GGG + chr5_2:60431711-60431730 Msa0779260:intron 40.0%
CACTCTTTCAATATCACAGC+AGG - chr5_2:60431784-60431803 None:intergenic 40.0%
! TTTGATTTCTTGTGGAGGAG+GGG + chr5_2:60431901-60431920 Msa0779260:intron 40.0%
TTATCCATGTGTGACAACTG+GGG - chr5_2:60432036-60432055 None:intergenic 40.0%
!! TTGAAAAAGCGGACTACACA+CGG - chr5_2:60432123-60432142 None:intergenic 40.0%
GTGTCATATTAGTGTCTGAC+CGG + chr5_2:60432276-60432295 Msa0779260:intron 40.0%
! TTCCGATGATTTTGTTGGTC+AGG + chr5_2:60432656-60432675 Msa0779260:CDS 40.0%
CTATTCAACAAGCGTATAGC+TGG - chr5_2:60432843-60432862 None:intergenic 40.0%
CGTGTCCAGAATCTATGTAA+AGG + chr5_2:60433082-60433101 Msa0779260:intron 40.0%
GTAAAGGATCTATTGGCAGA+AGG + chr5_2:60433098-60433117 Msa0779260:CDS 40.0%
CTCACCGCAATAAGAATTGT+CGG - chr5_2:60433177-60433196 None:intergenic 40.0%
TGATATGTATGCATTCACGG+TGG + chr5_2:60433393-60433412 Msa0779260:intron 40.0%
GATATGTATGCATTCACGGT+GGG + chr5_2:60433394-60433413 Msa0779260:intron 40.0%
ATATGTATGCATTCACGGTG+GGG + chr5_2:60433395-60433414 Msa0779260:intron 40.0%
TATACTGACGATGACATTGG+AGG + chr5_2:60433566-60433585 Msa0779260:CDS 40.0%
TGCAGATGTTGGATTTGGAA+TGG + chr5_2:60433621-60433640 Msa0779260:three_prime_UTR 40.0%
TCCAAATGGTAGAAATGGAG+AGG + chr5_2:60434080-60434099 Msa0779260:intron 40.0%
TCCTCTCCATTTCTACCATT+TGG - chr5_2:60434084-60434103 None:intergenic 40.0%
GGAGAGGATAATAAATGGAG+AGG + chr5_2:60434096-60434115 Msa0779260:intron 40.0%
CTCACTTTCTCTCTCAAAGG+TGG - chr5_2:60430800-60430819 None:intergenic 45.0%
GATGACAATTGGGTTCATGG+AGG + chr5_2:60430905-60430924 Msa0779260:exon 45.0%
GTGCTTCTGGTGAAAGCAAA+GGG + chr5_2:60430927-60430946 Msa0779260:CDS 45.0%
CACAAGAGCAGTGTAGTTCA+TGG + chr5_2:60431180-60431199 Msa0779260:CDS 45.0%
CAGTGTTTGACATCGACACA+TGG + chr5_2:60431524-60431543 Msa0779260:intron 45.0%
TTGAAGGCAGCTGAAGTGAA+TGG + chr5_2:60431562-60431581 Msa0779260:intron 45.0%
TGTAGTTCATGATTCGACGG+TGG + chr5_2:60431661-60431680 Msa0779260:intron 45.0%
TTGATTTCTTGTGGAGGAGG+GGG + chr5_2:60431902-60431921 Msa0779260:intron 45.0%
!! TGAAAAAGCGGACTACACAC+GGG - chr5_2:60432122-60432141 None:intergenic 45.0%
!!! GTGTGTAGTCCGCTTTTTCA+AGG + chr5_2:60432122-60432141 Msa0779260:intron 45.0%
TGATGAGAGTCACTCGTGTT+TGG - chr5_2:60432199-60432218 None:intergenic 45.0%
AAGGAACACCTATGTAGCAC+CGG - chr5_2:60432298-60432317 None:intergenic 45.0%
TGGTGTACTGAATGATGCAG+AGG + chr5_2:60432524-60432543 Msa0779260:intron 45.0%
GGTGTACTGAATGATGCAGA+GGG + chr5_2:60432525-60432544 Msa0779260:intron 45.0%
GTGTACTGAATGATGCAGAG+GGG + chr5_2:60432526-60432545 Msa0779260:intron 45.0%
TGTACTGAATGATGCAGAGG+GGG + chr5_2:60432527-60432546 Msa0779260:intron 45.0%
GTATTCAGAGTGGAATACCC+TGG + chr5_2:60432579-60432598 Msa0779260:CDS 45.0%
! TGTATTGGTCACCTGATCCA+GGG - chr5_2:60432599-60432618 None:intergenic 45.0%
! TTGTATTGGTCACCTGATCC+AGG - chr5_2:60432600-60432619 None:intergenic 45.0%
GGCCTGACCAACAAAATCAT+CGG - chr5_2:60432661-60432680 None:intergenic 45.0%
CGAGCCGACAATTCTTATTG+CGG + chr5_2:60433170-60433189 Msa0779260:CDS 45.0%
TATGTATGCATTCACGGTGG+GGG + chr5_2:60433396-60433415 Msa0779260:intron 45.0%
GTTCATTGTGCTGCAGATGT+TGG + chr5_2:60433610-60433629 Msa0779260:exon 45.0%
TGTGCTGCAGATGTTGGATT+TGG + chr5_2:60433616-60433635 Msa0779260:three_prime_UTR 45.0%
AGTGGGTCCTACCATAAAGT+AGG + chr5_2:60434010-60434029 Msa0779260:intron 45.0%
! TCATGGTGGGACCTACTTTA+TGG - chr5_2:60434024-60434043 None:intergenic 45.0%
!!! ACTATTTTATTTATTTATTA+AGG + chr5_2:60431945-60431964 Msa0779260:intron 5.0%
GGTGCTTCTGGTGAAAGCAA+AGG + chr5_2:60430926-60430945 Msa0779260:CDS 50.0%
AAGGCAGCTGAAGTGAATGG+TGG + chr5_2:60431565-60431584 Msa0779260:intron 50.0%
! AATCTTCCCTGACGGGTACA+CGG + chr5_2:60431718-60431737 Msa0779260:intron 50.0%
ACTAATCCGTGTACCCGTCA+GGG - chr5_2:60431727-60431746 None:intergenic 50.0%
TACTAATCCGTGTACCCGTC+AGG - chr5_2:60431728-60431747 None:intergenic 50.0%
GGATGCAGTTCATCTGTGAG+TGG + chr5_2:60431838-60431857 Msa0779260:intron 50.0%
GTTACCCCAGTTGTCACACA+TGG + chr5_2:60432029-60432048 Msa0779260:intron 50.0%
GTACTGAATGATGCAGAGGG+GGG + chr5_2:60432528-60432547 Msa0779260:intron 50.0%
AGAGTGGAATACCCTGGATC+AGG + chr5_2:60432585-60432604 Msa0779260:CDS 50.0%
TTGGCAGAAGGAGCAGAGAA+TGG + chr5_2:60433110-60433129 Msa0779260:CDS 50.0%
TCGTCCTCGCAAGTATAGTG+TGG + chr5_2:60433145-60433164 Msa0779260:CDS 50.0%
CGAACCACACTATACTTGCG+AGG - chr5_2:60433152-60433171 None:intergenic 50.0%
TATTGCGGTGAGCTCGAAGT+TGG + chr5_2:60433185-60433204 Msa0779260:CDS 50.0%
CTGACGATGACATTGGAGGA+TGG + chr5_2:60433570-60433589 Msa0779260:CDS 50.0%
ACGATGACATTGGAGGATGG+AGG + chr5_2:60433573-60433592 Msa0779260:CDS 50.0%
CGATGACATTGGAGGATGGA+GGG + chr5_2:60433574-60433593 Msa0779260:CDS 50.0%
GGTGGGACCTACTTTATGGT+AGG - chr5_2:60434020-60434039 None:intergenic 50.0%
!! TGGGTTCATGGAGGTGCTTC+TGG + chr5_2:60430914-60430933 Msa0779260:CDS 55.0%
!! AAAGCGGACTACACACGGGA+GGG - chr5_2:60432118-60432137 None:intergenic 55.0%
!! AAAAGCGGACTACACACGGG+AGG - chr5_2:60432119-60432138 None:intergenic 55.0%
!! GTGTCTGACCGGTGCTACAT+AGG + chr5_2:60432287-60432306 Msa0779260:intron 55.0%
!! AAGCGGACTACACACGGGAG+GGG - chr5_2:60432117-60432136 None:intergenic 60.0%
ATGATGCAGAGGGGGGTAGC+AGG + chr5_2:60432535-60432554 Msa0779260:intron 60.0%
!! AGCGGACTACACACGGGAGG+GGG - chr5_2:60432116-60432135 None:intergenic 65.0%
! TCACGGTGGGGGCGCATGTT+TGG + chr5_2:60433407-60433426 Msa0779260:intron 65.0%
CGGACTACACACGGGAGGGG+GGG - chr5_2:60432114-60432133 None:intergenic 70.0%
! GCGGACTACACACGGGAGGG+GGG - chr5_2:60432115-60432134 None:intergenic 70.0%
TGCAGAGGGGGGTAGCAGGC+CGG + chr5_2:60432539-60432558 Msa0779260:intron 70.0%
AGGGGGGTAGCAGGCCGGTA+TGG + chr5_2:60432544-60432563 Msa0779260:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 60430668 60434171 60430668 ID=Msa0779260;Name=Msa0779260
chr5_2 mRNA 60430668 60434171 60430668 ID=Msa0779260-mRNA-1;Parent=Msa0779260;Name=Msa0779260-mRNA-1;_AED=0.26;_eAED=0.26;_QI=200|1|1|1|0.66|0.42|7|298|153
chr5_2 exon 60430668 60430857 60430668 ID=Msa0779260-mRNA-1:exon:17719;Parent=Msa0779260-mRNA-1
chr5_2 exon 60430896 60430972 60430896 ID=Msa0779260-mRNA-1:exon:17720;Parent=Msa0779260-mRNA-1
chr5_2 exon 60431136 60431201 60431136 ID=Msa0779260-mRNA-1:exon:17721;Parent=Msa0779260-mRNA-1
chr5_2 exon 60432544 60432682 60432544 ID=Msa0779260-mRNA-1:exon:17722;Parent=Msa0779260-mRNA-1
chr5_2 exon 60433091 60433226 60433091 ID=Msa0779260-mRNA-1:exon:17723;Parent=Msa0779260-mRNA-1
chr5_2 exon 60433557 60433865 60433557 ID=Msa0779260-mRNA-1:exon:17724;Parent=Msa0779260-mRNA-1
chr5_2 exon 60434129 60434171 60434129 ID=Msa0779260-mRNA-1:exon:17725;Parent=Msa0779260-mRNA-1
chr5_2 five_prime_UTR 60430668 60430857 60430668 ID=Msa0779260-mRNA-1:five_prime_utr;Parent=Msa0779260-mRNA-1
chr5_2 five_prime_UTR 60430896 60430905 60430896 ID=Msa0779260-mRNA-1:five_prime_utr;Parent=Msa0779260-mRNA-1
chr5_2 CDS 60430906 60430972 60430906 ID=Msa0779260-mRNA-1:cds;Parent=Msa0779260-mRNA-1
chr5_2 CDS 60431136 60431201 60431136 ID=Msa0779260-mRNA-1:cds;Parent=Msa0779260-mRNA-1
chr5_2 CDS 60432544 60432682 60432544 ID=Msa0779260-mRNA-1:cds;Parent=Msa0779260-mRNA-1
chr5_2 CDS 60433091 60433226 60433091 ID=Msa0779260-mRNA-1:cds;Parent=Msa0779260-mRNA-1
chr5_2 CDS 60433557 60433610 60433557 ID=Msa0779260-mRNA-1:cds;Parent=Msa0779260-mRNA-1
chr5_2 three_prime_UTR 60433611 60433865 60433611 ID=Msa0779260-mRNA-1:three_prime_utr;Parent=Msa0779260-mRNA-1
chr5_2 three_prime_UTR 60434129 60434171 60434129 ID=Msa0779260-mRNA-1:three_prime_utr;Parent=Msa0779260-mRNA-1
Gene Sequence

>Msa0779260

ATGACAATTGGGTTCATGGAGGTGCTTCTGGTGAAAGCAAAGGGTCTTCAAGAGACTGATATCTTTGCTCGCATGGATCCGTATGTTCTCTTACAATACAAAAGGCAAGAGCACAAGAGCAGTGTAGTTCATGAGGGGGGTAGCAGGCCGGTATGGAATGAGAAATTTGTATTCAGAGTGGAATACCCTGGATCAGGTGACCAATACAAGCTCAATCTTAAAATCATGGACAAGGATGTTTTTTCTTCCGATGATTTTGTTGGTCAGGCCGTAATCTATGTAAAGGATCTATTGGCAGAAGGAGCAGAGAATGGATCAGCTGAGCTTCGTCCTCGCAAGTATAGTGTGGTTCGAGCCGACAATTCTTATTGCGGTGAGCTCGAAGTTGGTATAACTTACACTCGAAAGGAAAATGAATATACTGACGATGACATTGGAGGATGGAGGGATAGTGAATATTAG

Protein sequence

>Msa0779260

MTIGFMEVLLVKAKGLQETDIFARMDPYVLLQYKRQEHKSSVVHEGGSRPVWNEKFVFRVEYPGSGDQYKLNLKIMDKDVFSSDDFVGQAVIYVKDLLAEGAENGSAELRPRKYSVVRADNSYCGELEVGITYTRKENEYTDDDIGGWRDSEY*