AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0474940


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474940 MtrunA17_Chr3g0132011 96.402 528 14 4 1 526 1 525 0.0 984
Msa0474940 MtrunA17_Chr3g0102341 40.334 419 215 9 93 489 371 776 2.61e-67 232
Msa0474940 MtrunA17_Chr5g0446481 51.613 186 82 4 93 277 397 575 2.01e-53 194
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0474940 AT3G48710.1 48.970 437 191 12 69 497 30 442 9.28e-112 340
Msa0474940 AT5G63550.2 49.043 418 173 10 94 497 94 485 4.52e-99 310
Msa0474940 AT5G63550.1 48.558 416 177 9 94 497 94 484 1.09e-97 306
Msa0474940 AT5G55660.1 52.632 171 73 4 93 261 323 487 6.11e-46 172
Msa0474940 AT4G26630.2 43.509 285 128 5 12 268 207 486 2.84e-42 161
Msa0474940 AT4G26630.1 43.509 285 128 5 12 268 207 486 2.84e-42 161

Find 141 sgRNAs with CRISPR-Local

Find 356 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGCAAAGCTGTTGGAATTTC+TGG 0.096765 3_3:-78007446 Msa0474940:CDS
TTCACACTACTCTTGTTTAT+TGG 0.122133 3_3:+78007575 None:intergenic
CCTATTCTACTTCTAATTCT+AGG 0.171908 3_3:-78009813 Msa0474940:five_prime_UTR
GCAATGTTAAATTTATTTAT+TGG 0.173383 3_3:-78004408 Msa0474940:three_prime_UTR
TTCTGGTTTGGGTTCATCTT+TGG 0.192982 3_3:+78009681 None:intergenic
AAAGCTTTGGTAGGTATATT+TGG 0.219175 3_3:-78004600 Msa0474940:three_prime_UTR
TTCAACTTCTTCTTCTGGTT+TGG 0.223760 3_3:+78009669 None:intergenic
TATGATAGATGCTCTAAATT+AGG 0.236927 3_3:-78004558 Msa0474940:three_prime_UTR
TTCAATTATCAGTCCTTTAC+TGG 0.245498 3_3:+78009363 None:intergenic
ATGTTGACAGGTAAACATTT+TGG 0.262420 3_3:-78004888 Msa0474940:intron
TCAACTTCTTCTTCTGGTTT+GGG 0.267047 3_3:+78009670 None:intergenic
AAATGACAAATCTGTAATAA+AGG 0.269850 3_3:+78004498 None:intergenic
CAATGTTAAATTTATTTATT+GGG 0.289715 3_3:-78004407 Msa0474940:three_prime_UTR
GAACCTTCACCTTCGAAGTT+TGG 0.300483 3_3:-78009397 Msa0474940:CDS
GTTACTTCAACTTCTTCTTC+TGG 0.304574 3_3:+78009664 None:intergenic
TAACATTGCTCTAAATTAGA+AGG 0.312028 3_3:+78004422 None:intergenic
AGAATAGGAAAGATGAGATT+TGG 0.329354 3_3:+78009828 None:intergenic
AATAAAGACAATACCTTTGC+AGG 0.331373 3_3:+78006795 None:intergenic
GGAAAGATGAGATTTGGAAT+TGG 0.340647 3_3:+78009834 None:intergenic
ACCGTCTTCCTTTCCCTAGT+TGG 0.341819 3_3:+78009433 None:intergenic
AACTGCAAAGGCTGCGGTTA+AGG 0.346132 3_3:-78005498 Msa0474940:CDS
GAAAGATGAGATTTGGAATT+GGG 0.348178 3_3:+78009835 None:intergenic
GAAGTACTCTTGTGAGCTTT+TGG 0.351465 3_3:+78005755 None:intergenic
CACTGCAACATCTTCATCTT+GGG 0.358494 3_3:+78005832 None:intergenic
GGAAGATGCTGGTGAGAAGA+AGG 0.360035 3_3:-78009515 Msa0474940:CDS
TAAGGAAGTAGATTTCAATA+AGG 0.361423 3_3:-78005106 Msa0474940:intron
AATGACAAATCTGTAATAAA+GGG 0.361945 3_3:+78004499 None:intergenic
TCTTCCCAAACAGTATACTA+TGG 0.363218 3_3:+78008004 None:intergenic
TTCATCATCATCATCTTTCT+CGG 0.365632 3_3:+78009579 None:intergenic
CCACTGCAACATCTTCATCT+TGG 0.375147 3_3:+78005831 None:intergenic
CTATCACTCGTCGGAGTAAC+CGG 0.377163 3_3:+78009457 None:intergenic
ATGCTCCATAGTATACTGTT+TGG 0.382079 3_3:-78008009 Msa0474940:CDS
CTATTCTACTTCTAATTCTA+GGG 0.384269 3_3:-78009812 Msa0474940:five_prime_UTR
GTCTATACAGGTTAAAGCTT+TGG 0.386031 3_3:-78004613 Msa0474940:three_prime_UTR
TTTGGTATCGTCTAGGGTTT+CGG 0.386462 3_3:+78009726 None:intergenic
CTCCTGTTAGCTGTCTATAC+AGG 0.397071 3_3:-78004625 Msa0474940:three_prime_UTR
CCTAGAATTAGAAGTAGAAT+AGG 0.410516 3_3:+78009813 None:intergenic
AAAATACTTGAGACGAGAAC+GGG 0.413782 3_3:+78010020 None:intergenic
AACAATCTAAAGAGGAATAT+AGG 0.417865 3_3:-78007879 Msa0474940:CDS
GAGCGGGTTACATCTAAATA+TGG 0.418307 3_3:+78004522 None:intergenic
TGCTCCATAGTATACTGTTT+GGG 0.420968 3_3:-78008008 Msa0474940:CDS
CCCACACATAACCAGAAAAC+TGG 0.422298 3_3:+78007856 None:intergenic
ACCTTTGCAGGTGTTTCTCC+AGG 0.429504 3_3:+78006807 None:intergenic
CGGTTACTCCGACGAGTGAT+AGG 0.432059 3_3:-78009456 Msa0474940:CDS
GGTAGCCATGGATGAAGAAA+AGG 0.436423 3_3:+78009747 None:intergenic
AAAGGAAAAGCAAGATACTA+AGG 0.439714 3_3:-78005537 Msa0474940:CDS
TGTGGATTTAGCTTCAGCTT+TGG 0.444959 3_3:+78005703 None:intergenic
AGCATATGCAGGTTGTCATC+AGG 0.452386 3_3:+78008027 None:intergenic
AGTTGTAGTTGAGATTCTTA+AGG 0.454398 3_3:-78005124 Msa0474940:CDS
CAGCTCAAGGATATTCCTAA+TGG 0.456524 3_3:-78009239 Msa0474940:intron
CGACGAGTGATAGGCCAACT+AGG 0.464921 3_3:-78009447 Msa0474940:CDS
TCTAGGGTTTCTCTTCCGCT+AGG 0.467674 3_3:-78009796 Msa0474940:five_prime_UTR
CTGCCTACTCGGCTCTACCT+TGG 0.468843 3_3:+78005158 None:intergenic
AACCTGTATAGACAGCTAAC+AGG 0.473251 3_3:+78004623 None:intergenic
TAAAGGACTGATAATTGAAA+AGG 0.476582 3_3:-78009359 Msa0474940:intron
GGAAGGTCTTCTTCCAGTAA+AGG 0.477738 3_3:-78009376 Msa0474940:CDS
TGCAGAAAATAGAATCTTGT+GGG 0.483707 3_3:-78004677 Msa0474940:three_prime_UTR
TAGAGCATCTATCATAGAAA+AGG 0.483847 3_3:+78004565 None:intergenic
GATGTTGCAGTGGCAAATAA+TGG 0.486223 3_3:-78005821 Msa0474940:CDS
AAAACAGAGAACAAGGGTAA+AGG 0.493647 3_3:-78007657 Msa0474940:CDS
GGTTGCAGGTTGATCTGACT+TGG 0.495113 3_3:+78005577 None:intergenic
TTACTCTTCATCTTCATCAC+TGG 0.498741 3_3:+78004722 None:intergenic
CTTCACCTTCGAAGTTTGGA+AGG 0.500580 3_3:-78009393 Msa0474940:CDS
GCAACCTCTAGCAAATCTCC+TGG 0.500613 3_3:-78006825 Msa0474940:CDS
GAAGATGCTGGTGAGAAGAA+GGG 0.505112 3_3:-78009514 Msa0474940:CDS
CAAGGTAGAGCCGAGTAGGC+AGG 0.505315 3_3:-78005157 Msa0474940:CDS
GATGTCGATGTGGGTAAAGA+TGG 0.508558 3_3:-78004750 Msa0474940:CDS
GGAACTGTCTGCAAAGCTGT+TGG 0.508885 3_3:-78007455 Msa0474940:CDS
CTAGGGTTTCTCTTCCGCTA+GGG 0.510869 3_3:-78009795 Msa0474940:five_prime_UTR
GCGTGCATGTCCTGCCTACT+CGG 0.511396 3_3:+78005147 None:intergenic
TGTGATATCCTCCGCCAACT+TGG 0.519770 3_3:-78004984 Msa0474940:intron
GATGAGGAGGAGGAAGATGC+TGG 0.524251 3_3:-78009526 Msa0474940:CDS
TGAAAATAAAATTTAGCTGT+GGG 0.524487 3_3:+78004650 None:intergenic
GTCTAGGGTTTCGGTAGCCA+TGG 0.528885 3_3:+78009735 None:intergenic
AAGCTGATAGTGATGGCGAT+GGG 0.530338 3_3:-78004773 Msa0474940:CDS
AAAGATGATGATGATGAAGA+TGG 0.532403 3_3:-78009574 Msa0474940:CDS
CAATAATAATGTTTACATGC+AGG 0.532869 3_3:+78004445 None:intergenic
CTTCCAAACTTCGAAGGTGA+AGG 0.533904 3_3:+78009394 None:intergenic
AAACAAGAGTAGTGTGAAGA+AGG 0.535530 3_3:-78007570 Msa0474940:intron
TGGCGATGGGGATGTCGATG+TGG 0.536667 3_3:-78004760 Msa0474940:CDS
AAGGCTGCGGTTAAGGATCA+AGG 0.539742 3_3:-78005491 Msa0474940:intron
GTATACTATGGAGCATATGC+AGG 0.541768 3_3:+78008016 None:intergenic
GGTGGGTAAATCAGAGGGAG+AGG 0.543397 3_3:-78005786 Msa0474940:CDS
TCATCCTCTTCAACATCAGA+AGG 0.546993 3_3:+78005887 None:intergenic
GCATAGAAAAGCAGAGGTGA+AGG 0.548691 3_3:-78004853 Msa0474940:CDS
AAGCAAAACTGCAAAGGCTG+CGG 0.555092 3_3:-78005504 Msa0474940:CDS
GGCTGCAAGCAAAACTGCAA+AGG 0.556180 3_3:-78005510 Msa0474940:CDS
ATGAAAATAAAATTTAGCTG+TGG 0.560967 3_3:+78004649 None:intergenic
AGACCAAGGTAGAGCCGAGT+AGG 0.561195 3_3:-78005161 Msa0474940:CDS
GTCAGGTTAACAATCTAAAG+AGG 0.562124 3_3:-78007887 Msa0474940:intron
CTGCAGAAAATAGAATCTTG+TGG 0.567663 3_3:-78004678 Msa0474940:three_prime_UTR
TCCTGGAGAAACACCTGCAA+AGG 0.568341 3_3:-78006808 Msa0474940:intron
ATACAGGTTAAAGCTTTGGT+AGG 0.571121 3_3:-78004609 Msa0474940:three_prime_UTR
AGAGGTCTTCTTAACAGATG+TGG 0.571409 3_3:+78005685 None:intergenic
AATCTGTAATAAAGGGGAGC+GGG 0.572542 3_3:+78004506 None:intergenic
AGATCGTACCAAGTTGGCGG+AGG 0.575455 3_3:+78004976 None:intergenic
GAAGCTGATAGTGATGGCGA+TGG 0.577833 3_3:-78004774 Msa0474940:CDS
AATGGAAGTGATAACGAGGT+GGG 0.578180 3_3:-78005803 Msa0474940:CDS
GTAGCCATGGATGAAGAAAA+GGG 0.579235 3_3:+78009748 None:intergenic
GTCGTCAGAGAAGAAGAGTC+CGG 0.583062 3_3:-78009476 Msa0474940:CDS
AAAGCCTTCTGATGTTGAAG+AGG 0.584119 3_3:-78005891 Msa0474940:CDS
TTGCATCAGAAAGTTCAGCT+TGG 0.584847 3_3:+78005864 None:intergenic
GACGAGTGATAGGCCAACTA+GGG 0.592833 3_3:-78009446 Msa0474940:CDS
AAATCTGTAATAAAGGGGAG+CGG 0.595906 3_3:+78004505 None:intergenic
AAAGCAAGATACTAAGGGAA+AGG 0.596671 3_3:-78005531 Msa0474940:CDS
CTAGTTGGCCTATCACTCGT+CGG 0.600264 3_3:+78009448 None:intergenic
AACGAGGTGGGTAAATCAGA+GGG 0.602782 3_3:-78005791 Msa0474940:CDS
AAAAGATCGTACCAAGTTGG+CGG 0.607538 3_3:+78004973 None:intergenic
GGCGATGGGGATGTCGATGT+GGG 0.608576 3_3:-78004759 Msa0474940:CDS
GCCAACTAGGGAAAGGAAGA+CGG 0.609544 3_3:-78009434 Msa0474940:CDS
GGGACGTGGTACTCAGCTCA+AGG 0.613257 3_3:-78009252 Msa0474940:CDS
GAGGAAGAAGCTGATAGTGA+TGG 0.613294 3_3:-78004780 Msa0474940:CDS
TGATGAGGAAGATGAAGGTG+AGG 0.613693 3_3:-78004799 Msa0474940:CDS
GTGATAGGCCAACTAGGGAA+AGG 0.614124 3_3:-78009441 Msa0474940:CDS
AAGGAAAAGCAAGATACTAA+GGG 0.616103 3_3:-78005536 Msa0474940:CDS
ATGACAAATCTGTAATAAAG+GGG 0.616269 3_3:+78004500 None:intergenic
AATTAATAATATGTCTGATG+AGG 0.618113 3_3:-78004814 Msa0474940:CDS
TGATGCTGATGATGAGGAGG+AGG 0.619807 3_3:-78009536 Msa0474940:CDS
GAACATCAGTAGTAGCATGT+GGG 0.620057 3_3:+78007419 None:intergenic
TTATGTGTGGGCTGAAAATG+AGG 0.621414 3_3:-78007844 Msa0474940:intron
TTTAATGCATAGAAAAGCAG+AGG 0.621749 3_3:-78004859 Msa0474940:CDS
GAAGACCTTCCAAACTTCGA+AGG 0.621788 3_3:+78009388 None:intergenic
AGAACATCAGTAGTAGCATG+TGG 0.622938 3_3:+78007418 None:intergenic
TTCTCCAGGAGATTTGCTAG+AGG 0.624862 3_3:+78006821 None:intergenic
AGAGAACAAGGGTAAAGGAG+AGG 0.625869 3_3:-78007652 Msa0474940:CDS
TAATGGAAGTGATAACGAGG+TGG 0.625907 3_3:-78005804 Msa0474940:CDS
TAACGAGGTGGGTAAATCAG+AGG 0.626281 3_3:-78005792 Msa0474940:CDS
AACATCAGTAGTAGCATGTG+GGG 0.636718 3_3:+78007420 None:intergenic
TAAAAGTAGTAAGAAGACCA+AGG 0.637365 3_3:-78005175 Msa0474940:CDS
CCAAGATGAAGATGTTGCAG+TGG 0.642055 3_3:-78005831 Msa0474940:CDS
TGCTGATGCTGATGATGAGG+AGG 0.650159 3_3:-78009539 Msa0474940:CDS
CGATGCTGATGCTGATGATG+AGG 0.652325 3_3:-78009542 Msa0474940:CDS
AAGAGAAGTAGAATCCTGCT+CGG 0.653130 3_3:+78005601 None:intergenic
ATGTCTGATGAGGAAGATGA+AGG 0.653342 3_3:-78004804 Msa0474940:CDS
AAATACTTGAGACGAGAACG+GGG 0.687473 3_3:+78010021 None:intergenic
AACTAGGGAAAGGAAGACGG+TGG 0.691004 3_3:-78009431 Msa0474940:CDS
ACTGTTTGGGAAGAAAACAA+AGG 0.691158 3_3:-78007995 Msa0474940:intron
AGCTGATAGTGATGGCGATG+GGG 0.696008 3_3:-78004772 Msa0474940:CDS
TGAAGTAACTGAACAAGACG+CGG 0.710408 3_3:-78009650 Msa0474940:CDS
GAAAAGATTGAAAACCCTAG+CGG 0.718687 3_3:+78009781 None:intergenic
AAATAATGGAAGTGATAACG+AGG 0.765529 3_3:-78005807 Msa0474940:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! GCAAAAAAAAAAAAAAAAAA+AGG + chr3_3:78005388-78005407 None:intergenic 10.0%
!!! ATTTTTTCTCAATTTTTTAT+CGG - chr3_3:78005531-78005550 Msa0474940:CDS 10.0%
!! GATTTATTTCATTTATTTAA+AGG - chr3_3:78006528-78006547 Msa0474940:intron 10.0%
!!! GTTTGTTATTTAATATAAAT+GGG - chr3_3:78007100-78007119 Msa0474940:intron 10.0%
!!! GTTTTTGATTAATTTGATTT+TGG - chr3_3:78005190-78005209 Msa0474940:intron 15.0%
!!! TATATTATTTTTGAATCCAA+AGG - chr3_3:78006939-78006958 Msa0474940:intron 15.0%
!!! GGTTTGTTATTTAATATAAA+TGG - chr3_3:78007099-78007118 Msa0474940:intron 15.0%
!!! AATATCAATTTTAGAATACT+TGG + chr3_3:78007294-78007313 None:intergenic 15.0%
!!! TGTCTTTATTTTATTCATTT+TGG - chr3_3:78007694-78007713 Msa0474940:intron 15.0%
!!! TTTTTTGGTATTGATTTTTT+TGG + chr3_3:78008847-78008866 None:intergenic 15.0%
!! TTCAGAATAACAAAAAATTA+GGG + chr3_3:78009160-78009179 None:intergenic 15.0%
!! GCAATGTTAAATTTATTTAT+TGG - chr3_3:78010068-78010087 Msa0474940:five_prime_UTR 15.0%
!! ATAGAGAGAGAAATAAAAAA+GGG + chr3_3:78004619-78004638 None:intergenic 20.0%
!! TATAGAGAGAGAAATAAAAA+AGG + chr3_3:78004620-78004639 None:intergenic 20.0%
!!! TTGATTTTGGTTATTTTTTC+AGG - chr3_3:78005203-78005222 Msa0474940:intron 20.0%
!!! TGATTTTGGTTATTTTTTCA+GGG - chr3_3:78005204-78005223 Msa0474940:intron 20.0%
!!! TTTTTTTTGCATTTCCTATA+TGG - chr3_3:78005398-78005417 Msa0474940:intron 20.0%
!! ACAATTAAAATCATCCATAT+AGG + chr3_3:78005415-78005434 None:intergenic 20.0%
!! AATGAAATAAATCTTTGCAA+AGG + chr3_3:78006521-78006540 None:intergenic 20.0%
!!! TTTATTTTCCATTTTAGAAG+TGG + chr3_3:78006975-78006994 None:intergenic 20.0%
!!! ATAAATGGGTTAATATCATT+TGG - chr3_3:78007114-78007133 Msa0474940:intron 20.0%
!!! AATAAAAAAGATGATTTGTC+TGG + chr3_3:78007246-78007265 None:intergenic 20.0%
!!! AGACAAATCATCTTTTTTAT+TGG - chr3_3:78007245-78007264 Msa0474940:intron 20.0%
!! TTTCAAATTATTATCTGTGT+CGG + chr3_3:78007401-78007420 None:intergenic 20.0%
!!! TTCTAGAGTTTGATTTTTTT+TGG - chr3_3:78007847-78007866 Msa0474940:CDS 20.0%
!!! TCTAGAGTTTGATTTTTTTT+GGG - chr3_3:78007848-78007867 Msa0474940:CDS 20.0%
!! GAATATATGTGATGTATTTA+AGG + chr3_3:78008037-78008056 None:intergenic 20.0%
!! GAGAAAACTTAATTAATGTT+TGG - chr3_3:78008137-78008156 Msa0474940:intron 20.0%
!! TCAGAATAACAAAAAATTAG+GGG + chr3_3:78009159-78009178 None:intergenic 20.0%
!! GTTCAGAATAACAAAAAATT+AGG + chr3_3:78009161-78009180 None:intergenic 20.0%
!! AATTAATAATATGTCTGATG+AGG - chr3_3:78009662-78009681 Msa0474940:CDS 20.0%
!! TGAAAATAAAATTTAGCTGT+GGG + chr3_3:78009829-78009848 None:intergenic 20.0%
!! ATGAAAATAAAATTTAGCTG+TGG + chr3_3:78009830-78009849 None:intergenic 20.0%
!! AATGACAAATCTGTAATAAA+GGG + chr3_3:78009980-78009999 None:intergenic 20.0%
!! AAATGACAAATCTGTAATAA+AGG + chr3_3:78009981-78010000 None:intergenic 20.0%
!!! TTTTTGGTTTTTAGTTTTGC+CGG - chr3_3:78004494-78004513 Msa0474940:three_prime_UTR 25.0%
!!! TTCTTTTTTTTTCTTTCTCC+CGG + chr3_3:78004516-78004535 None:intergenic 25.0%
! TAGAGAGAGAAATAAAAAAG+GGG + chr3_3:78004618-78004637 None:intergenic 25.0%
! CTATTCTACTTCTAATTCTA+GGG - chr3_3:78004664-78004683 Msa0474940:three_prime_UTR 25.0%
! TAAAGGACTGATAATTGAAA+AGG - chr3_3:78005117-78005136 Msa0474940:CDS 25.0%
!!! CATTTTTTCTCTCTCAATTT+TGG - chr3_3:78005148-78005167 Msa0474940:CDS 25.0%
! TACTCAAAAGTAACTATGTA+AGG + chr3_3:78005275-78005294 None:intergenic 25.0%
! TTGAACATAATCACATATGT+TGG + chr3_3:78005504-78005523 None:intergenic 25.0%
!! TATTGTTGATTGAAGTATCA+TGG - chr3_3:78005906-78005925 Msa0474940:CDS 25.0%
!! TATAGTTGATTGAAGTATCA+TGG - chr3_3:78005961-78005980 Msa0474940:intron 25.0%
! AATTATAAGTCACGCTTATT+GGG + chr3_3:78006056-78006075 None:intergenic 25.0%
!! AAGTAATTGGTTTCAACAAA+AGG + chr3_3:78006190-78006209 None:intergenic 25.0%
! GCAAACAAAAATAAACATGT+GGG + chr3_3:78006217-78006236 None:intergenic 25.0%
! TTTCAATAACCAAAATGGTA+TGG + chr3_3:78006291-78006310 None:intergenic 25.0%
!!! ACTGACTTTCATTAATCTTT+TGG - chr3_3:78006312-78006331 Msa0474940:intron 25.0%
! TTTATTGCAAACTATTTCAG+TGG - chr3_3:78006403-78006422 Msa0474940:intron 25.0%
! AACAATCTAAAGAGGAATAT+AGG - chr3_3:78006597-78006616 Msa0474940:intron 25.0%
! AATAGATATGAATCTTTGTG+AGG - chr3_3:78006694-78006713 Msa0474940:intron 25.0%
! ATAGATATGAATCTTTGTGA+GGG - chr3_3:78006695-78006714 Msa0474940:intron 25.0%
! ATCTACATCTTCACAATTAT+TGG - chr3_3:78006791-78006810 Msa0474940:intron 25.0%
!! TTCTAACAAAACATGTTTTC+AGG - chr3_3:78006997-78007016 Msa0474940:intron 25.0%
!!! TTGCTTTTATGTTAACAGAA+AGG - chr3_3:78007609-78007628 Msa0474940:CDS 25.0%
! TTTATGGAACTATCTTGAAT+GGG + chr3_3:78008106-78008125 None:intergenic 25.0%
!! TTTTATGGAACTATCTTGAA+TGG + chr3_3:78008107-78008126 None:intergenic 25.0%
! TTCAAGATAGTTCCATAAAA+AGG - chr3_3:78008107-78008126 Msa0474940:intron 25.0%
!! TTCTCATTGTTTCCTTTTTA+TGG + chr3_3:78008122-78008141 None:intergenic 25.0%
! GAAGATATCTTCATACAAAT+TGG + chr3_3:78008261-78008280 None:intergenic 25.0%
!!! TATCATCCTTTTATTTCCTT+TGG - chr3_3:78008426-78008445 Msa0474940:intron 25.0%
! AAGATCATCAAACATAAAGA+GGG + chr3_3:78009028-78009047 None:intergenic 25.0%
! AACTAAAGGTTTAAAAACTC+TGG + chr3_3:78009107-78009126 None:intergenic 25.0%
! AGAATAACAAAAAATTAGGG+GGG + chr3_3:78009157-78009176 None:intergenic 25.0%
! CAGAATAACAAAAAATTAGG+GGG + chr3_3:78009158-78009177 None:intergenic 25.0%
! TAAGGAAGTAGATTTCAATA+AGG - chr3_3:78009370-78009389 Msa0474940:CDS 25.0%
!!! AAAAATTTTAACCTGCAAAC+TGG + chr3_3:78009423-78009442 None:intergenic 25.0%
! TGATAAAATTTCTTCCTTCA+GGG - chr3_3:78009529-78009548 Msa0474940:CDS 25.0%
!! TTTTGCAATTAAATGTTGAC+AGG - chr3_3:78009576-78009595 Msa0474940:CDS 25.0%
!! CTTTTCTATGCATTAAATCA+AGG + chr3_3:78009614-78009633 None:intergenic 25.0%
!! TATGATAGATGCTCTAAATT+AGG - chr3_3:78009918-78009937 Msa0474940:five_prime_UTR 25.0%
! ATGACAAATCTGTAATAAAG+GGG + chr3_3:78009979-78009998 None:intergenic 25.0%
! CAATAATAATGTTTACATGC+AGG + chr3_3:78010034-78010053 None:intergenic 25.0%
!! TAACATTGCTCTAAATTAGA+AGG + chr3_3:78010057-78010076 None:intergenic 25.0%
AAAAATACTTGAGACGAGAA+CGG + chr3_3:78004460-78004479 None:intergenic 30.0%
!!! TTTTGGTTTTTAGTTTTGCC+GGG - chr3_3:78004495-78004514 Msa0474940:three_prime_UTR 30.0%
AGAGAGAGAAATAAAAAAGG+GGG + chr3_3:78004617-78004636 None:intergenic 30.0%
! GAAAGATGAGATTTGGAATT+GGG + chr3_3:78004644-78004663 None:intergenic 30.0%
AGAATAGGAAAGATGAGATT+TGG + chr3_3:78004651-78004670 None:intergenic 30.0%
CCTAGAATTAGAAGTAGAAT+AGG + chr3_3:78004666-78004685 None:intergenic 30.0%
CCTATTCTACTTCTAATTCT+AGG - chr3_3:78004663-78004682 Msa0474940:three_prime_UTR 30.0%
TTCATCATCATCATCTTTCT+CGG + chr3_3:78004900-78004919 None:intergenic 30.0%
! AAAGATGATGATGATGAAGA+TGG - chr3_3:78004902-78004921 Msa0474940:intron 30.0%
TTCAATTATCAGTCCTTTAC+TGG + chr3_3:78005116-78005135 None:intergenic 30.0%
!!! TCTCTCAATTTTGGTTTTTG+AGG - chr3_3:78005157-78005176 Msa0474940:CDS 30.0%
TGAAGATATCGTGTGAATTT+AGG - chr3_3:78005303-78005322 Msa0474940:intron 30.0%
GAAGATATCGTGTGAATTTA+GGG - chr3_3:78005304-78005323 Msa0474940:intron 30.0%
CTGAATTGTTGTCAAATCTA+GGG + chr3_3:78005722-78005741 None:intergenic 30.0%
ACTGAATTGTTGTCAAATCT+AGG + chr3_3:78005723-78005742 None:intergenic 30.0%
!! GACATCTGTCTTTTTCATTA+TGG - chr3_3:78005781-78005800 Msa0474940:CDS 30.0%
TAAACAAGACTTCCAAATAC+TGG + chr3_3:78005845-78005864 None:intergenic 30.0%
GAATTATAAGTCACGCTTAT+TGG + chr3_3:78006057-78006076 None:intergenic 30.0%
TAAGCGTGACTTATAATTCT+AGG - chr3_3:78006058-78006077 Msa0474940:intron 30.0%
AAGCGTGACTTATAATTCTA+GGG - chr3_3:78006059-78006078 Msa0474940:intron 30.0%
ACAAAAGGTTGCTTATATGT+TGG + chr3_3:78006175-78006194 None:intergenic 30.0%
GGCAAACAAAAATAAACATG+TGG + chr3_3:78006218-78006237 None:intergenic 30.0%
TGACAAGTATTATGCATGTA+CGG + chr3_3:78006239-78006258 None:intergenic 30.0%
CAGTGTTTCAATAACCAAAA+TGG + chr3_3:78006296-78006315 None:intergenic 30.0%
TGATATGTGTATGGTATTAG+TGG - chr3_3:78006337-78006356 Msa0474940:intron 30.0%
TAGATATGAATCTTTGTGAG+GGG - chr3_3:78006696-78006715 Msa0474940:intron 30.0%
GAAGATGTAGATTTAATTGC+AGG + chr3_3:78006783-78006802 None:intergenic 30.0%
! TTCACACTACTCTTGTTTAT+TGG + chr3_3:78006904-78006923 None:intergenic 30.0%
! TTCAAGTACCACTTCTAAAA+TGG - chr3_3:78006964-78006983 Msa0474940:intron 30.0%
!! TAACAAAACATGTTTTCAGG+AGG - chr3_3:78007000-78007019 Msa0474940:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG - chr3_3:78007432-78007451 Msa0474940:CDS 30.0%
AATAAAGACAATACCTTTGC+AGG + chr3_3:78007684-78007703 None:intergenic 30.0%
CTAGAACGAATATTCAGAAT+TGG + chr3_3:78007833-78007852 None:intergenic 30.0%
! TGATTTGGATAGTTGTATTG+TGG - chr3_3:78007933-78007952 Msa0474940:intron 30.0%
GTTACTTGTAATATGCTGTT+TGG - chr3_3:78008181-78008200 Msa0474940:intron 30.0%
! GGTTCTAATTAAAGTCAATC+AGG + chr3_3:78008331-78008350 None:intergenic 30.0%
TGTATTCGCTAAAATGAACA+GGG + chr3_3:78008352-78008371 None:intergenic 30.0%
ATGTATTCGCTAAAATGAAC+AGG + chr3_3:78008353-78008372 None:intergenic 30.0%
AATCCTCCAAAGGAAATAAA+AGG + chr3_3:78008435-78008454 None:intergenic 30.0%
AAAAAGCAAACTTCAGAATC+TGG - chr3_3:78008553-78008572 Msa0474940:intron 30.0%
! AAATAATGGAAGTGATAACG+AGG - chr3_3:78008669-78008688 Msa0474940:intron 30.0%
TACTTCCAAAAAATCTGTGA+AGG - chr3_3:78008738-78008757 Msa0474940:intron 30.0%
!!! CTTTCCAGTTTTTTGTATCT+TGG + chr3_3:78008923-78008942 None:intergenic 30.0%
CAAGATACAAAAAACTGGAA+AGG - chr3_3:78008921-78008940 Msa0474940:intron 30.0%
AAAGGAAAAGCAAGATACTA+AGG - chr3_3:78008939-78008958 Msa0474940:intron 30.0%
AAGGAAAAGCAAGATACTAA+GGG - chr3_3:78008940-78008959 Msa0474940:intron 30.0%
CAAGATCATCAAACATAAAG+AGG + chr3_3:78009029-78009048 None:intergenic 30.0%
!! TTAAGCATTGAAGTCTATAG+AGG + chr3_3:78009053-78009072 None:intergenic 30.0%
TAGACTTCAATGCTTAATCT+AGG - chr3_3:78009056-78009075 Msa0474940:intron 30.0%
AGACTTCAATGCTTAATCTA+GGG - chr3_3:78009057-78009076 Msa0474940:intron 30.0%
GAATAACAAAAAATTAGGGG+GGG + chr3_3:78009156-78009175 None:intergenic 30.0%
! CTTTTACCTTTACCTACAAT+TGG + chr3_3:78009287-78009306 None:intergenic 30.0%
TAAAAGTAGTAAGAAGACCA+AGG - chr3_3:78009301-78009320 Msa0474940:intron 30.0%
AGTTGTAGTTGAGATTCTTA+AGG - chr3_3:78009352-78009371 Msa0474940:intron 30.0%
! TTTTGAATATGTCTTGATGC+AGG - chr3_3:78009461-78009480 Msa0474940:CDS 30.0%
! CTGAAGGAAGAAATTTTATC+AGG + chr3_3:78009530-78009549 None:intergenic 30.0%
CTGATAAAATTTCTTCCTTC+AGG - chr3_3:78009528-78009547 Msa0474940:CDS 30.0%
GATAAAATTTCTTCCTTCAG+GGG - chr3_3:78009530-78009549 Msa0474940:CDS 30.0%
ATAAAATTTCTTCCTTCAGG+GGG - chr3_3:78009531-78009550 Msa0474940:CDS 30.0%
! ATGTTGACAGGTAAACATTT+TGG - chr3_3:78009588-78009607 Msa0474940:CDS 30.0%
TTTAATGCATAGAAAAGCAG+AGG - chr3_3:78009617-78009636 Msa0474940:CDS 30.0%
TGCAGAAAATAGAATCTTGT+GGG - chr3_3:78009799-78009818 Msa0474940:five_prime_UTR 30.0%
! AAAGCTTTGGTAGGTATATT+TGG - chr3_3:78009876-78009895 Msa0474940:five_prime_UTR 30.0%
! TAGAGCATCTATCATAGAAA+AGG + chr3_3:78009914-78009933 None:intergenic 30.0%
AAAATACTTGAGACGAGAAC+GGG + chr3_3:78004459-78004478 None:intergenic 35.0%
GAGAGAGAAATAAAAAAGGG+GGG + chr3_3:78004616-78004635 None:intergenic 35.0%
! GGAAAGATGAGATTTGGAAT+TGG + chr3_3:78004645-78004664 None:intergenic 35.0%
GAAAAGATTGAAAACCCTAG+CGG + chr3_3:78004698-78004717 None:intergenic 35.0%
! TTTTCCCTTTTCTTCATCCA+TGG - chr3_3:78004724-78004743 Msa0474940:CDS 35.0%
!!! TTTTGGTTTGGTATCGTCTA+GGG + chr3_3:78004759-78004778 None:intergenic 35.0%
!!! GTTTTCGACTTGTTTTGGTT+TGG + chr3_3:78004771-78004790 None:intergenic 35.0%
!! TCAACTTCTTCTTCTGGTTT+GGG + chr3_3:78004809-78004828 None:intergenic 35.0%
! TTCAACTTCTTCTTCTGGTT+TGG + chr3_3:78004810-78004829 None:intergenic 35.0%
GTTACTTCAACTTCTTCTTC+TGG + chr3_3:78004815-78004834 None:intergenic 35.0%
AGGCAATTAGACATACCATT+AGG + chr3_3:78005255-78005274 None:intergenic 35.0%
GTCTGTTTGTGTTTGTTCAT+TGG - chr3_3:78005336-78005355 Msa0474940:intron 35.0%
ACAAATATGTGTCAGCAGTA+TGG + chr3_3:78005467-78005486 None:intergenic 35.0%
TTTCACATGCATACATCTGT+AGG - chr3_3:78005751-78005770 Msa0474940:CDS 35.0%
TTCACATGCATACATCTGTA+GGG - chr3_3:78005752-78005771 Msa0474940:CDS 35.0%
ATACTCACATGACCAGTATT+TGG - chr3_3:78005830-78005849 Msa0474940:CDS 35.0%
!! TTGGAAGTCTTGTTTACATC+TGG - chr3_3:78005849-78005868 Msa0474940:CDS 35.0%
! TTTTCCTATGTTACGAGCAT+AGG - chr3_3:78005874-78005893 Msa0474940:CDS 35.0%
ATTGCAGCTGTTAAGAACAA+TGG - chr3_3:78005984-78006003 Msa0474940:intron 35.0%
AGCGTGACTTATAATTCTAG+GGG - chr3_3:78006060-78006079 Msa0474940:intron 35.0%
! TATCTAATTGACTCTACCTG+TGG - chr3_3:78006090-78006109 Msa0474940:intron 35.0%
! TTTTATGACCATAAGTCCAC+AGG + chr3_3:78006109-78006128 None:intergenic 35.0%
! ACATGTGGGCTATAAGTAAT+TGG + chr3_3:78006203-78006222 None:intergenic 35.0%
! TTTTGTCCACCATACCATTT+TGG - chr3_3:78006279-78006298 Msa0474940:intron 35.0%
CAATAACCAAAATGGTATGG+TGG + chr3_3:78006288-78006307 None:intergenic 35.0%
ATGCTCCATAGTATACTGTT+TGG - chr3_3:78006467-78006486 Msa0474940:intron 35.0%
TGCTCCATAGTATACTGTTT+GGG - chr3_3:78006468-78006487 Msa0474940:intron 35.0%
TCTTCCCAAACAGTATACTA+TGG + chr3_3:78006475-78006494 None:intergenic 35.0%
ACTGTTTGGGAAGAAAACAA+AGG - chr3_3:78006481-78006500 Msa0474940:intron 35.0%
GTCAGGTTAACAATCTAAAG+AGG - chr3_3:78006589-78006608 Msa0474940:intron 35.0%
ACATGATGATCTGATCCTTA+TGG - chr3_3:78006747-78006766 Msa0474940:intron 35.0%
ACATCTTCACAATTATTGGC+AGG - chr3_3:78006795-78006814 Msa0474940:intron 35.0%
AAAACAGAGAACAAGGGTAA+AGG - chr3_3:78006819-78006838 Msa0474940:CDS 35.0%
AAACAAGAGTAGTGTGAAGA+AGG - chr3_3:78006906-78006925 Msa0474940:intron 35.0%
AAGTGGTACTTGAATTCCTT+TGG + chr3_3:78006958-78006977 None:intergenic 35.0%
TCTTCTTGCTGAAAAAGAAC+AGG - chr3_3:78007078-78007097 Msa0474940:intron 35.0%
TCATCAATCAGTGAAGACAA+AGG + chr3_3:78007215-78007234 None:intergenic 35.0%
AATGTCAGAACCTGATTGAA+AGG - chr3_3:78007758-78007777 Msa0474940:intron 35.0%
ATCACCATCACAACATTGAA+AGG + chr3_3:78007917-78007936 None:intergenic 35.0%
! TCAATGTTGTGATGGTGATT+TGG - chr3_3:78007918-78007937 Msa0474940:intron 35.0%
TGTATTGTGGATTTCTTACC+TGG - chr3_3:78007946-78007965 Msa0474940:intron 35.0%
! GATTTCTTACCTGGTTTGTA+AGG - chr3_3:78007955-78007974 Msa0474940:intron 35.0%
! GTGATGTATTTAAGGCTGAA+TGG + chr3_3:78008029-78008048 None:intergenic 35.0%
!! TTTACAGAAAGTGTCATCCA+AGG + chr3_3:78008083-78008102 None:intergenic 35.0%
!! CATCCTTTTATTTCCTTTGG+AGG - chr3_3:78008429-78008448 Msa0474940:intron 35.0%
TCATAACAGAAATCCTCCAA+AGG + chr3_3:78008445-78008464 None:intergenic 35.0%
TCACTTATTTCACACACACT+AGG + chr3_3:78008481-78008500 None:intergenic 35.0%
!!! CTGAAGTTTGCTTTTTCTTC+TGG + chr3_3:78008549-78008568 None:intergenic 35.0%
TTCCAAAAAATCTGTGAAGG+AGG - chr3_3:78008741-78008760 Msa0474940:intron 35.0%
TCCAAAAAATCTGTGAAGGA+GGG - chr3_3:78008742-78008761 Msa0474940:intron 35.0%
!!! TGGAGTTTTTTCACTGCTTT+TGG + chr3_3:78008827-78008846 None:intergenic 35.0%
!!! TGCTCGGTAATTGACTTTTT+TGG + chr3_3:78008862-78008881 None:intergenic 35.0%
AAAAAAGTCAATTACCGAGC+AGG - chr3_3:78008861-78008880 Msa0474940:intron 35.0%
!!! GTTTTTTGTATCTTGGTTGC+AGG + chr3_3:78008916-78008935 None:intergenic 35.0%
GCAACCAAGATACAAAAAAC+TGG - chr3_3:78008916-78008935 Msa0474940:intron 35.0%
AAAGCAAGATACTAAGGGAA+AGG - chr3_3:78008945-78008964 Msa0474940:intron 35.0%
GACTTCAATGCTTAATCTAG+GGG - chr3_3:78009058-78009077 Msa0474940:intron 35.0%
TCAGAAAGAACTAAGTAAGC+AGG + chr3_3:78009262-78009281 None:intergenic 35.0%
TTCTTTCTGATGCCAATTGT+AGG - chr3_3:78009272-78009291 Msa0474940:intron 35.0%
TTACTCTTCATCTTCATCAC+TGG + chr3_3:78009757-78009776 None:intergenic 35.0%
CTGCAGAAAATAGAATCTTG+TGG - chr3_3:78009798-78009817 Msa0474940:five_prime_UTR 35.0%
GTCTATACAGGTTAAAGCTT+TGG - chr3_3:78009863-78009882 Msa0474940:five_prime_UTR 35.0%
! ATACAGGTTAAAGCTTTGGT+AGG - chr3_3:78009867-78009886 Msa0474940:five_prime_UTR 35.0%
AAATCTGTAATAAAGGGGAG+CGG + chr3_3:78009974-78009993 None:intergenic 35.0%
AAATACTTGAGACGAGAACG+GGG + chr3_3:78004458-78004477 None:intergenic 40.0%
GTAGCCATGGATGAAGAAAA+GGG + chr3_3:78004731-78004750 None:intergenic 40.0%
! TTTGGTATCGTCTAGGGTTT+CGG + chr3_3:78004753-78004772 None:intergenic 40.0%
!!! GTTTTGGTTTGGTATCGTCT+AGG + chr3_3:78004760-78004779 None:intergenic 40.0%
!! GCTTCGTTTTCGACTTGTTT+TGG + chr3_3:78004776-78004795 None:intergenic 40.0%
!! TTCTGGTTTGGGTTCATCTT+TGG + chr3_3:78004798-78004817 None:intergenic 40.0%
TGAAGTAACTGAACAAGACG+CGG - chr3_3:78004826-78004845 Msa0474940:CDS 40.0%
!!! TGGTTATTTTTTCAGGGACG+TGG - chr3_3:78005210-78005229 Msa0474940:intron 40.0%
CAGCTCAAGGATATTCCTAA+TGG - chr3_3:78005237-78005256 Msa0474940:intron 40.0%
ATTGCAGCTGTTGAGAACAA+TGG - chr3_3:78005929-78005948 Msa0474940:CDS 40.0%
GCGTGACTTATAATTCTAGG+GGG - chr3_3:78006061-78006080 Msa0474940:intron 40.0%
! CTTTTGGCGTGATATGTGTA+TGG - chr3_3:78006328-78006347 Msa0474940:intron 40.0%
GTATACTATGGAGCATATGC+AGG + chr3_3:78006463-78006482 None:intergenic 40.0%
!! TCAGGAATAGCAAAGGTGTT+AGG + chr3_3:78006563-78006582 None:intergenic 40.0%
!! ACACCTTTGCTATTCCTGAA+TGG - chr3_3:78006564-78006583 Msa0474940:intron 40.0%
! AGGAATATAGGCCAGTTTTC+TGG - chr3_3:78006609-78006628 Msa0474940:intron 40.0%
!!! CCAGTTTTCTGGTTATGTGT+GGG - chr3_3:78006620-78006639 Msa0474940:intron 40.0%
! TTATGTGTGGGCTGAAAATG+AGG - chr3_3:78006632-78006651 Msa0474940:intron 40.0%
GCAGGTTAATATCAGCCATA+AGG + chr3_3:78006765-78006784 None:intergenic 40.0%
GCAGGAAAAACAGAGAACAA+GGG - chr3_3:78006813-78006832 Msa0474940:CDS 40.0%
TGCAAAGCTGTTGGAATTTC+TGG - chr3_3:78007030-78007049 Msa0474940:intron 40.0%
AACATCAGTAGTAGCATGTG+GGG + chr3_3:78007059-78007078 None:intergenic 40.0%
GAACATCAGTAGTAGCATGT+GGG + chr3_3:78007060-78007079 None:intergenic 40.0%
AGAACATCAGTAGTAGCATG+TGG + chr3_3:78007061-78007080 None:intergenic 40.0%
TACATGAGACCTATGAAGCA+CGG + chr3_3:78007521-78007540 None:intergenic 40.0%
ATTGTGCTTGATCACGACTT+TGG - chr3_3:78007873-78007892 Msa0474940:CDS 40.0%
GACACCTTTCAATGTTGTGA+TGG - chr3_3:78007910-78007929 Msa0474940:intron 40.0%
TGAACTTGACCTTACAAACC+AGG + chr3_3:78007967-78007986 None:intergenic 40.0%
TAAGAAGCTGCAGAAAGAAC+TGG + chr3_3:78008388-78008407 None:intergenic 40.0%
AAAGCCTTCTGATGTTGAAG+AGG - chr3_3:78008585-78008604 Msa0474940:intron 40.0%
TCATCCTCTTCAACATCAGA+AGG + chr3_3:78008592-78008611 None:intergenic 40.0%
TTGCATCAGAAAGTTCAGCT+TGG + chr3_3:78008615-78008634 None:intergenic 40.0%
CACTGCAACATCTTCATCTT+GGG + chr3_3:78008647-78008666 None:intergenic 40.0%
GATGTTGCAGTGGCAAATAA+TGG - chr3_3:78008655-78008674 Msa0474940:intron 40.0%
! TAATGGAAGTGATAACGAGG+TGG - chr3_3:78008672-78008691 Msa0474940:intron 40.0%
! AATGGAAGTGATAACGAGGT+GGG - chr3_3:78008673-78008692 Msa0474940:intron 40.0%
!! GAAGTACTCTTGTGAGCTTT+TGG + chr3_3:78008724-78008743 None:intergenic 40.0%
!!! ACCCTCCTTCACAGATTTTT+TGG + chr3_3:78008746-78008765 None:intergenic 40.0%
! TGTGGATTTAGCTTCAGCTT+TGG + chr3_3:78008776-78008795 None:intergenic 40.0%
AGAGGTCTTCTTAACAGATG+TGG + chr3_3:78008794-78008813 None:intergenic 40.0%
AAGAGAAGTAGAATCCTGCT+CGG + chr3_3:78008878-78008897 None:intergenic 40.0%
! GTACTTGTTACTGTACTGGT+TGG - chr3_3:78009080-78009099 Msa0474940:intron 40.0%
CAGTTCAGCATGACAACTAA+AGG + chr3_3:78009121-78009140 None:intergenic 40.0%
CTGATGCCAATTGTAGGTAA+AGG - chr3_3:78009278-78009297 Msa0474940:intron 40.0%
GCAATTCATTACCAGTTTGC+AGG - chr3_3:78009409-78009428 Msa0474940:CDS 40.0%
! AAAAGATCGTACCAAGTTGG+CGG + chr3_3:78009506-78009525 None:intergenic 40.0%
GGAAAAAGATCGTACCAAGT+TGG + chr3_3:78009509-78009528 None:intergenic 40.0%
ATGTCTGATGAGGAAGATGA+AGG - chr3_3:78009672-78009691 Msa0474940:CDS 40.0%
AACCTGTATAGACAGCTAAC+AGG + chr3_3:78009856-78009875 None:intergenic 40.0%
!! GAGCGGGTTACATCTAAATA+TGG + chr3_3:78009957-78009976 None:intergenic 40.0%
AATCTGTAATAAAGGGGAGC+GGG + chr3_3:78009973-78009992 None:intergenic 40.0%
GGTAGCCATGGATGAAGAAA+AGG + chr3_3:78004732-78004751 None:intergenic 45.0%
GAAGATGCTGGTGAGAAGAA+GGG - chr3_3:78004962-78004981 Msa0474940:intron 45.0%
GAACCTTCACCTTCGAAGTT+TGG - chr3_3:78005079-78005098 Msa0474940:intron 45.0%
CTTCCAAACTTCGAAGGTGA+AGG + chr3_3:78005085-78005104 None:intergenic 45.0%
CTTCACCTTCGAAGTTTGGA+AGG - chr3_3:78005083-78005102 Msa0474940:intron 45.0%
GAAGACCTTCCAAACTTCGA+AGG + chr3_3:78005091-78005110 None:intergenic 45.0%
GGAAGGTCTTCTTCCAGTAA+AGG - chr3_3:78005100-78005119 Msa0474940:intron 45.0%
TGACGTGTTTGTGTCTGTGT+CGG - chr3_3:78005557-78005576 Msa0474940:CDS 45.0%
! TGTCTGTGTCGGTGCTTTAA+AGG - chr3_3:78005568-78005587 Msa0474940:CDS 45.0%
! GTCTGTGTCGGTGCTTTAAA+GGG - chr3_3:78005569-78005588 Msa0474940:CDS 45.0%
TGTGCCTATGCTCGTAACAT+AGG + chr3_3:78005881-78005900 None:intergenic 45.0%
TGACTCTACCTGTGGACTTA+TGG - chr3_3:78006098-78006117 Msa0474940:intron 45.0%
AGCATATGCAGGTTGTCATC+AGG + chr3_3:78006452-78006471 None:intergenic 45.0%
CCACCATTCAGGAATAGCAA+AGG + chr3_3:78006570-78006589 None:intergenic 45.0%
!! CCTTTGCTATTCCTGAATGG+TGG - chr3_3:78006567-78006586 Msa0474940:intron 45.0%
TGTTAACCTGACCACCATTC+AGG + chr3_3:78006581-78006600 None:intergenic 45.0%
!!! GCCAGTTTTCTGGTTATGTG+TGG - chr3_3:78006619-78006638 Msa0474940:intron 45.0%
CCCACACATAACCAGAAAAC+TGG + chr3_3:78006623-78006642 None:intergenic 45.0%
GGCAGGAAAAACAGAGAACA+AGG - chr3_3:78006812-78006831 Msa0474940:CDS 45.0%
AGAGAACAAGGGTAAAGGAG+AGG - chr3_3:78006824-78006843 Msa0474940:CDS 45.0%
CTGTCTCATGCTATGAAGCA+CGG - chr3_3:78007334-78007353 Msa0474940:intron 45.0%
CATGCTATGAAGCACGGATA+CGG - chr3_3:78007340-78007359 Msa0474940:intron 45.0%
!! TTCTCCAGGAGATTTGCTAG+AGG + chr3_3:78007658-78007677 None:intergenic 45.0%
TCATCCAAGGCAGAATGGTT+GGG + chr3_3:78008070-78008089 None:intergenic 45.0%
AAGTGTCATCCAAGGCAGAA+TGG + chr3_3:78008075-78008094 None:intergenic 45.0%
CCACTGCAACATCTTCATCT+TGG + chr3_3:78008648-78008667 None:intergenic 45.0%
CCAAGATGAAGATGTTGCAG+TGG - chr3_3:78008645-78008664 Msa0474940:intron 45.0%
TAACGAGGTGGGTAAATCAG+AGG - chr3_3:78008684-78008703 Msa0474940:intron 45.0%
AACGAGGTGGGTAAATCAGA+GGG - chr3_3:78008685-78008704 Msa0474940:intron 45.0%
AAGCAAAACTGCAAAGGCTG+CGG - chr3_3:78008972-78008991 Msa0474940:intron 45.0%
!! AGGGGTACTTGTTACTGTAC+TGG - chr3_3:78009076-78009095 Msa0474940:intron 45.0%
AAATTAGGGGGGGAACAAAC+AGG + chr3_3:78009146-78009165 None:intergenic 45.0%
CAAGAAATTACTCCCCCTGA+AGG + chr3_3:78009546-78009565 None:intergenic 45.0%
GCATAGAAAAGCAGAGGTGA+AGG - chr3_3:78009623-78009642 Msa0474940:CDS 45.0%
TGATGAGGAAGATGAAGGTG+AGG - chr3_3:78009677-78009696 Msa0474940:CDS 45.0%
! GAGGAAGAAGCTGATAGTGA+TGG - chr3_3:78009696-78009715 Msa0474940:CDS 45.0%
! AAGCTGATAGTGATGGCGAT+GGG - chr3_3:78009703-78009722 Msa0474940:CDS 45.0%
GATGTCGATGTGGGTAAAGA+TGG - chr3_3:78009726-78009745 Msa0474940:CDS 45.0%
CTCCTGTTAGCTGTCTATAC+AGG - chr3_3:78009851-78009870 Msa0474940:five_prime_UTR 45.0%
!!! TTGATTTTATTTTTTATTTT+TGG - chr3_3:78004478-78004497 Msa0474940:three_prime_UTR 5.0%
!!! ATATTTTTCTTTTTTATATA+TGG - chr3_3:78009214-78009233 Msa0474940:intron 5.0%
! TCTAGGGTTTCTCTTCCGCT+AGG - chr3_3:78004680-78004699 Msa0474940:three_prime_UTR 50.0%
CTAGGGTTTCTCTTCCGCTA+GGG - chr3_3:78004681-78004700 Msa0474940:three_prime_UTR 50.0%
! CGATGCTGATGCTGATGATG+AGG - chr3_3:78004934-78004953 Msa0474940:intron 50.0%
! TGCTGATGCTGATGATGAGG+AGG - chr3_3:78004937-78004956 Msa0474940:intron 50.0%
! TGATGCTGATGATGAGGAGG+AGG - chr3_3:78004940-78004959 Msa0474940:intron 50.0%
GGAAGATGCTGGTGAGAAGA+AGG - chr3_3:78004961-78004980 Msa0474940:intron 50.0%
GTCGTCAGAGAAGAAGAGTC+CGG - chr3_3:78005000-78005019 Msa0474940:intron 50.0%
CTATCACTCGTCGGAGTAAC+CGG + chr3_3:78005022-78005041 None:intergenic 50.0%
! CTAGTTGGCCTATCACTCGT+CGG + chr3_3:78005031-78005050 None:intergenic 50.0%
GACGAGTGATAGGCCAACTA+GGG - chr3_3:78005030-78005049 Msa0474940:intron 50.0%
GTGATAGGCCAACTAGGGAA+AGG - chr3_3:78005035-78005054 Msa0474940:intron 50.0%
GCCAACTAGGGAAAGGAAGA+CGG - chr3_3:78005042-78005061 Msa0474940:intron 50.0%
ACCGTCTTCCTTTCCCTAGT+TGG + chr3_3:78005046-78005065 None:intergenic 50.0%
AACTAGGGAAAGGAAGACGG+TGG - chr3_3:78005045-78005064 Msa0474940:intron 50.0%
!! AGTTCGGTGTGTGACACGTT+GGG + chr3_3:78005442-78005461 None:intergenic 50.0%
TGTCAGCAGTATGGCGAGTT+CGG + chr3_3:78005458-78005477 None:intergenic 50.0%
GCTATTCCTGAATGGTGGTC+AGG - chr3_3:78006572-78006591 Msa0474940:intron 50.0%
GGAACTGTCTGCAAAGCTGT+TGG - chr3_3:78007021-78007040 Msa0474940:intron 50.0%
ATGAAGCACGGATACGGACA+CGG - chr3_3:78007346-78007365 Msa0474940:intron 50.0%
!! TACAAGTGTCGGTGTCGTGT+CGG - chr3_3:78007443-78007462 Msa0474940:CDS 50.0%
TATGAAGCACGGACACTCCT+CGG + chr3_3:78007510-78007529 None:intergenic 50.0%
GCAACCTCTAGCAAATCTCC+TGG - chr3_3:78007651-78007670 Msa0474940:CDS 50.0%
TCCTGGAGAAACACCTGCAA+AGG - chr3_3:78007668-78007687 Msa0474940:intron 50.0%
ACCTTTGCAGGTGTTTCTCC+AGG + chr3_3:78007672-78007691 None:intergenic 50.0%
CCACGTGCAACCTTTCAATC+AGG + chr3_3:78007771-78007790 None:intergenic 50.0%
CCTGATTGAAAGGTTGCACG+TGG - chr3_3:78007768-78007787 Msa0474940:intron 50.0%
TACTCCCAACCATTCTGCCT+TGG - chr3_3:78008063-78008082 Msa0474940:intron 50.0%
GTCATCCAAGGCAGAATGGT+TGG + chr3_3:78008071-78008090 None:intergenic 50.0%
! GCTTTTGGCAGCTTTTGCAG+AGG + chr3_3:78008812-78008831 None:intergenic 50.0%
!! GGTTGCAGGTTGATCTGACT+TGG + chr3_3:78008902-78008921 None:intergenic 50.0%
GGCTGCAAGCAAAACTGCAA+AGG - chr3_3:78008966-78008985 Msa0474940:intron 50.0%
AACTGCAAAGGCTGCGGTTA+AGG - chr3_3:78008978-78008997 Msa0474940:intron 50.0%
AAGGCTGCGGTTAAGGATCA+AGG - chr3_3:78008985-78009004 Msa0474940:intron 50.0%
TGTGATATCCTCCGCCAACT+TGG - chr3_3:78009492-78009511 Msa0474940:CDS 50.0%
! GAAGCTGATAGTGATGGCGA+TGG - chr3_3:78009702-78009721 Msa0474940:CDS 50.0%
! AGCTGATAGTGATGGCGATG+GGG - chr3_3:78009704-78009723 Msa0474940:CDS 50.0%
! GTCTAGGGTTTCGGTAGCCA+TGG + chr3_3:78004744-78004763 None:intergenic 55.0%
GATGAGGAGGAGGAAGATGC+TGG - chr3_3:78004950-78004969 Msa0474940:intron 55.0%
CGGTTACTCCGACGAGTGAT+AGG - chr3_3:78005020-78005039 Msa0474940:intron 55.0%
CGACGAGTGATAGGCCAACT+AGG - chr3_3:78005029-78005048 Msa0474940:intron 55.0%
!! GAGTTCGGTGTGTGACACGT+TGG + chr3_3:78005443-78005462 None:intergenic 55.0%
!! GAGGAGTGTCCGTGCTTCAT+AGG - chr3_3:78007509-78007528 Msa0474940:intron 55.0%
GGTGGGTAAATCAGAGGGAG+AGG - chr3_3:78008690-78008709 Msa0474940:intron 55.0%
AGACCAAGGTAGAGCCGAGT+AGG - chr3_3:78009315-78009334 Msa0474940:intron 55.0%
! AGATCGTACCAAGTTGGCGG+AGG + chr3_3:78009503-78009522 None:intergenic 55.0%
GGGACGTGGTACTCAGCTCA+AGG - chr3_3:78005224-78005243 Msa0474940:intron 60.0%
ACGGATACGGACACGGACAC+CGG - chr3_3:78007353-78007372 Msa0474940:intron 60.0%
GTCAGTGTCCGTGTCGTGTC+CGG + chr3_3:78007375-78007394 None:intergenic 60.0%
ACACGACACGTGTCCGACAC+CGG - chr3_3:78007472-78007491 Msa0474940:intron 60.0%
GATTAGGCGTGTCCCGGTGT+CGG + chr3_3:78007488-78007507 None:intergenic 60.0%
! TCCTCGGATTAGGCGTGTCC+CGG + chr3_3:78007494-78007513 None:intergenic 60.0%
GCACGGACACTCCTCGGATT+AGG + chr3_3:78007504-78007523 None:intergenic 60.0%
CTGCCTACTCGGCTCTACCT+TGG + chr3_3:78009321-78009340 None:intergenic 60.0%
CAAGGTAGAGCCGAGTAGGC+AGG - chr3_3:78009319-78009338 Msa0474940:intron 60.0%
GCGTGCATGTCCTGCCTACT+CGG + chr3_3:78009332-78009351 None:intergenic 60.0%
TGGCGATGGGGATGTCGATG+TGG - chr3_3:78009716-78009735 Msa0474940:CDS 60.0%
GGCGATGGGGATGTCGATGT+GGG - chr3_3:78009717-78009736 Msa0474940:CDS 60.0%
CACGGACACCGGACACGACA+CGG - chr3_3:78007364-78007383 Msa0474940:intron 65.0%
CACGACACGTGTCCGACACC+GGG - chr3_3:78007473-78007492 Msa0474940:intron 65.0%
ACCGGGACACGCCTAATCCG+AGG - chr3_3:78007490-78007509 Msa0474940:intron 65.0%
Chromosome Type Strat End Strand Name
chr3_3 gene 78004407 78010091 78004407 ID=Msa0474940;Name=Msa0474940
chr3_3 mRNA 78004407 78010091 78004407 ID=Msa0474940-mRNA-1;Parent=Msa0474940;Name=Msa0474940-mRNA-1;_AED=0.05;_eAED=0.05;_QI=336|1|1|1|1|1|11|315|529
chr3_3 exon 78004407 78004900 78004407 ID=Msa0474940-mRNA-1:exon:20969;Parent=Msa0474940-mRNA-1
chr3_3 exon 78004985 78005015 78004985 ID=Msa0474940-mRNA-1:exon:20968;Parent=Msa0474940-mRNA-1
chr3_3 exon 78005107 78005204 78005107 ID=Msa0474940-mRNA-1:exon:20967;Parent=Msa0474940-mRNA-1
chr3_3 exon 78005492 78005948 78005492 ID=Msa0474940-mRNA-1:exon:20966;Parent=Msa0474940-mRNA-1
chr3_3 exon 78006809 78006871 78006809 ID=Msa0474940-mRNA-1:exon:20965;Parent=Msa0474940-mRNA-1
chr3_3 exon 78007399 78007479 78007399 ID=Msa0474940-mRNA-1:exon:20964;Parent=Msa0474940-mRNA-1
chr3_3 exon 78007571 78007681 78007571 ID=Msa0474940-mRNA-1:exon:20963;Parent=Msa0474940-mRNA-1
chr3_3 exon 78007845 78007904 78007845 ID=Msa0474940-mRNA-1:exon:20962;Parent=Msa0474940-mRNA-1
chr3_3 exon 78007996 78008075 78007996 ID=Msa0474940-mRNA-1:exon:20961;Parent=Msa0474940-mRNA-1
chr3_3 exon 78009240 78009273 78009240 ID=Msa0474940-mRNA-1:exon:20960;Parent=Msa0474940-mRNA-1
chr3_3 exon 78009360 78010091 78009360 ID=Msa0474940-mRNA-1:exon:20959;Parent=Msa0474940-mRNA-1
chr3_3 five_prime_UTR 78009756 78010091 78009756 ID=Msa0474940-mRNA-1:five_prime_utr;Parent=Msa0474940-mRNA-1
chr3_3 CDS 78009360 78009755 78009360 ID=Msa0474940-mRNA-1:cds;Parent=Msa0474940-mRNA-1
chr3_3 CDS 78009240 78009273 78009240 ID=Msa0474940-mRNA-1:cds;Parent=Msa0474940-mRNA-1
chr3_3 CDS 78007996 78008075 78007996 ID=Msa0474940-mRNA-1:cds;Parent=Msa0474940-mRNA-1
chr3_3 CDS 78007845 78007904 78007845 ID=Msa0474940-mRNA-1:cds;Parent=Msa0474940-mRNA-1
chr3_3 CDS 78007571 78007681 78007571 ID=Msa0474940-mRNA-1:cds;Parent=Msa0474940-mRNA-1
chr3_3 CDS 78007399 78007479 78007399 ID=Msa0474940-mRNA-1:cds;Parent=Msa0474940-mRNA-1
chr3_3 CDS 78006809 78006871 78006809 ID=Msa0474940-mRNA-1:cds;Parent=Msa0474940-mRNA-1
chr3_3 CDS 78005492 78005948 78005492 ID=Msa0474940-mRNA-1:cds;Parent=Msa0474940-mRNA-1
chr3_3 CDS 78005107 78005204 78005107 ID=Msa0474940-mRNA-1:cds;Parent=Msa0474940-mRNA-1
chr3_3 CDS 78004985 78005015 78004985 ID=Msa0474940-mRNA-1:cds;Parent=Msa0474940-mRNA-1
chr3_3 CDS 78004722 78004900 78004722 ID=Msa0474940-mRNA-1:cds;Parent=Msa0474940-mRNA-1
chr3_3 three_prime_UTR 78004407 78004721 78004407 ID=Msa0474940-mRNA-1:three_prime_utr;Parent=Msa0474940-mRNA-1
Gene Sequence

>Msa0474940

ATGGCTACCGAAACCCTAGACGATACCAAACCAAAACAAGTCGAAAACGAAGCCAAAGATGAACCCAAACCAGAAGAAGAAGTTGAAGTAACTGAACAAGACGCGGAAATTGCTGAATCTGATGAGAAGAAAGAGATCGATGAACATGAAGATTCCGAGAAAGATGATGATGATGAAGATGGAGACGAAGACGATGCTGATGCTGATGATGAGGAGGAGGAAGATGCTGGTGAGAAGAAGGGTGTGAAGAAAGAAGCGTCGTCAGAGAAGAAGAGTCCGGTTACTCCGACGAGTGATAGGCCAACTAGGGAAAGGAAGACGGTGGAGCGATACTCTGAACCTTCACCTTCGAAGTTTGGAAGGTCTTCTTCCAGTAAAGGACTGATAATTGAAAAGGGACGTGGTACTCAGCTCAAGGATATTCCTAATGTGGCTTTCAAGTTGTCGAAGAGAAAACCTGATGACAACCTGCATATGCTCCATAGTATACTGTTTGGGAAGAAAACAAAGGTTAACAATCTAAAGAGGAATATAGGCCAGTTTTCTGGTTATGTGTGGGCTGAAAATGAGGAAAAACAGAGAACAAGGGTAAAGGAGAGGATTGACAAATGTGTGAAAGAAAAATTGATTGTCTTCTGCGATGTTCTTAATATTCCAATAAACAAGAGTAGTGTGAAGAAGGAGGAACTGTCTGCAAAGCTGTTGGAATTTCTGGAGTCCCCACATGCTACTACTGATGTTCTTCTTGCTGAAAAAGAACAGAAAGGTAAGAAGCGAGTTAGAAAAGCAACCTCTAGCAAATCTCCTGGAGAAACACCTGCAAAGAAGAAAAAGCAAACTTCAGAATCTGGAAAAAAGCGAAAGCCTTCTGATGTTGAAGAGGATGACCAAGCTGAACTTTCTGATGCAAAAGATGAGTCCCAAGATGAAGATGTTGCAGTGGCAAATAATGGAAGTGATAACGAGGTGGGTAAATCAGAGGGAGAGGAAGATACACCAAAAGCTCACAAGAGTACTTCCAAAAAATCTGTGAAGGAGGGTTCAGTTGCCAAAGCTGAAGCTAAATCCACATCTGTTAAGAAGACCTCTGCAAAAGCTGCCAAAAGCAGTGAAAAAACTCCAAAAAAATCAATACCAAAAAAGTCAATTACCGAGCAGGATTCTACTTCTCTTTCCAAGTCAGATCAACCTGCAACCAAGATACAAAAAACTGGAAAGGAAAAGCAAGATACTAAGGGAAAGGCTGCAAGCAAAACTGCAAAGGCTGCGGTTAAGGATCAAGGTAAAGGTAAAAGTAGTAAGAAGACCAAGGTAGAGCCGAGTAGGCAGGACATGCACGCAGTTGTAGTTGAGATTCTTAAGGAAGTAGATTTCAATAAGGCAACTTTGTGTGATATCCTCCGCCAACTTGGTAAACATTTTGGCCTTGATTTAATGCATAGAAAAGCAGAGGTGAAGGATATCATCACAGATGTAATTAATAATATGTCTGATGAGGAAGATGAAGGTGAGGAAGAAGCTGATAGTGATGGCGATGGGGATGTCGATGTGGGTAAAGATGGCGATGCCAGTGATGAAGATGAAGAGTAA

Protein sequence

>Msa0474940

MATETLDDTKPKQVENEAKDEPKPEEEVEVTEQDAEIAESDEKKEIDEHEDSEKDDDDEDGDEDDADADDEEEEDAGEKKGVKKEASSEKKSPVTPTSDRPTRERKTVERYSEPSPSKFGRSSSSKGLIIEKGRGTQLKDIPNVAFKLSKRKPDDNLHMLHSILFGKKTKVNNLKRNIGQFSGYVWAENEEKQRTRVKERIDKCVKEKLIVFCDVLNIPINKSSVKKEELSAKLLEFLESPHATTDVLLAEKEQKGKKRVRKATSSKSPGETPAKKKKQTSESGKKRKPSDVEEDDQAELSDAKDESQDEDVAVANNGSDNEVGKSEGEEDTPKAHKSTSKKSVKEGSVAKAEAKSTSVKKTSAKAAKSSEKTPKKSIPKKSITEQDSTSLSKSDQPATKIQKTGKEKQDTKGKAASKTAKAAVKDQGKGKSSKKTKVEPSRQDMHAVVVEILKEVDFNKATLCDILRQLGKHFGLDLMHRKAEVKDIITDVINNMSDEEDEGEEEADSDGDGDVDVGKDGDASDEDEE*