AlfalfaGEDB | Msa0740060

M. sativa cultivar zhongmu-4 / Msa0740060

KEGG: K09842|K11817|K22417
GO: GO:0000166 GO:0003674 GO:0003824 GO:0004029 GO:0004031 GO:0005488 GO:0005515 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005829 GO:0006066 GO:0006082 GO:0006629 GO:0006714 GO:0006720 GO:0006721 GO:0006790 GO:0006807 GO:0008150 GO:0008152 GO:0008299 GO:0008610 GO:0009058 GO:0009687 GO:0009688 GO:0009850 GO:0009851 GO:0009987 GO:0010293 GO:0010817 GO:0016053 GO:0016106 GO:0016114 GO:0016143 GO:0016491 GO:0016620 GO:0016623 GO:0016903 GO:0018479 GO:0018488 GO:0019748 GO:0019752 GO:0019757 GO:0019760 GO:0019899 GO:0031625 GO:0032787 GO:0036094 GO:0042445 GO:0042446 GO:0043167 GO:0043168 GO:0043288 GO:0043289 GO:0043436 GO:0044237 GO:0044238 GO:0044249 GO:0044255 GO:0044281 GO:0044283 GO:0044389 GO:0044424 GO:0044444 GO:0044464 GO:0046165 GO:0046394 GO:0048037 GO:0050302 GO:0050660 GO:0050662 GO:0055114 GO:0065007 GO:0065008 GO:0071704 GO:0072330 GO:0097159 GO:1901135 GO:1901265 GO:1901363 GO:1901564 GO:1901576 GO:1901615 GO:1901617 GO:1901657 GO:1902644 GO:1902645
PFAM: PF00111.30

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740060	KEH28334.1	94.669	619	32	1	1	619	1	618	0.0	1139

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740060	sp\|Q7G192\|ALDO2_ARATH	53.485	617	229	16	11	619	2	568	0.0	609

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740060	G7KHG0	94.669	619	32	1	1	619	1	618	0.0	1139

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0094600	Msa0740060	-0.815838	7.530977e-52	-8.615850e-47
Msa0452810	Msa0740060	-0.823678	1.217139e-53	-8.615850e-47
Msa0585650	Msa0740060	-0.803593	3.237276e-49	-8.615850e-47
Msa0740060	Msa1109820	0.804762	1.848938e-49	-8.615850e-47
Msa0740060	Msa1152950	0.808259	3.380919e-50	-8.615850e-47
Msa0740060	Msa1174310	0.800196	1.614152e-48	-8.615850e-47
Msa0740060	Msa1235400	0.807494	4.919049e-50	-8.615850e-47

Showing 1 to 7 of 7 entries

Previous1Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740060	MtrunA17_Chr5g0440261	94.669	619	32	1	1	619	1	618	0.0	1139
Msa0740060	MtrunA17_Chr5g0440251	76.367	622	141	5	1	619	1	619	0.0	948
Msa0740060	MtrunA17_Chr8g0337481	64.356	202	68	2	596	797	88	285	1.85e-82	265
Msa0740060	MtrunA17_Chr8g0337361	63.861	202	69	2	596	797	205	402	7.04e-81	265
Msa0740060	MtrunA17_Chr8g0337471	62.871	202	71	2	596	797	147	344	3.00e-80	261
Msa0740060	MtrunA17_Chr8g0337491	63.500	200	69	2	596	795	158	353	2.51e-79	261
Msa0740060	MtrunA17_Chr5g0445921	92.000	125	10	0	670	794	11	135	2.68e-77	245
Msa0740060	MtrunA17_Chr8g0337371	57.709	227	86	3	579	797	613	837	3.83e-76	263
Msa0740060	MtrunA17_Chr8g0337371	62.245	196	70	2	596	791	193	384	1.79e-72	253
Msa0740060	MtrunA17_Chr8g0337451	59.901	202	77	2	596	797	147	344	2.98e-75	248

Showing 1 to 10 of 21 entries

Previous1 2 3Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0740060	AT3G43600.1	53.485	617	229	16	11	619	2	568	0.0	609
Msa0740060	AT5G20960.1	52.989	619	260	14	8	619	17	611	0.0	608
Msa0740060	AT5G20960.2	52.989	619	260	14	8	619	17	611	0.0	608
Msa0740060	AT1G04580.1	52.188	617	245	12	12	619	6	581	0.0	601
Msa0740060	AT2G27150.1	54.010	611	244	12	12	619	3	579	0.0	585
Msa0740060	AT2G27150.2	54.010	611	244	12	12	619	3	579	0.0	585
Msa0740060	AT2G27150.4	54.010	611	244	12	12	619	3	579	0.0	584
Msa0740060	AT2G27150.5	49.095	497	216	12	126	619	1	463	8.51e-134	424
Msa0740060	AT2G27150.3	49.095	497	216	12	126	619	1	463	1.52e-132	424
Msa0740060	AT2G27150.6	49.095	497	216	12	126	619	1	463	1.52e-132	424

Showing 1 to 10 of 38 entries

Previous1 2 3 4Next

Find 146 sgRNAs with CRISPR-Local

Find 225 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAATCAAAAGGGATCAATC+AGG	0.418309	5_1:-58883662	Msa0740060:CDS
AAACCATGATAGATACTTGT+AGG	0.416337	5_1:-58883142	Msa0740060:CDS
AAAGTTGTTGTTAATAATAC+TGG	0.296448	5_1:-58883755	Msa0740060:CDS
AAAGTTTGAATGGCTTGCAT+TGG	0.563510	5_1:-58883381	Msa0740060:CDS
AAATCAAAAGGGATCAATCA+GGG	0.587834	5_1:-58883661	Msa0740060:CDS
AAATGCTGCTTTCCTTGTTC+AGG	0.290746	5_1:-58883189	Msa0740060:CDS
AACATTGCTTCTAATGCAGC+TGG	0.496232	5_1:+58881521	None:intergenic
AACCAACTGCTAAACTCGAA+AGG	0.600066	5_1:+58882955	None:intergenic
AACTCAAGCAAAGTGGTTGA+CGG	0.509030	5_1:+58885157	None:intergenic
AAGAGGGAAACAGACATTCC+GGG	0.511760	5_1:+58884178	None:intergenic

Showing 1 to 10 of 146 entries

Previous1 2 3 4 5…15Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
GTTTATATACATGTCTGTAC+TGG	-	chr5_1:58882059-58882078	Msa0740060:intron	30.0%
TGATATAGTTGAAGGATCAT+AGG	+	chr5_1:58882087-58882106	None:intergenic	30.0%
TTTCGTAAAATATCTGCATC+TGG	+	chr5_1:58882269-58882288	None:intergenic	30.0%
AACGATGTACATAAACTTCA+AGG	+	chr5_1:58882340-58882359	None:intergenic	30.0%
TGTTCAATAACAACAAGTGA+AGG	-	chr5_1:58882541-58882560	Msa0740060:intron	30.0%
TCAATTCATGAAAGATTTGC+AGG	-	chr5_1:58882592-58882611	Msa0740060:intron	30.0%
TTGACTTCCTTCAAAAACAT+AGG	+	chr5_1:58882943-58882962	None:intergenic	30.0%
TCAGAAGCTATAAACAAATC+AGG	+	chr5_1:58882967-58882986	None:intergenic	30.0%
CTGAGCTTTCAAAAATCAAA+AGG	-	chr5_1:58883151-58883170	Msa0740060:CDS	30.0%
AAAATCAAAAGGGATCAATC+AGG	-	chr5_1:58883162-58883181	Msa0740060:CDS	30.0%

Showing 1 to 10 of 225 entries

Previous1 2 3 4 5…23Next

Chromosome	Type	Strat	End	Strand	Name
chr5_1	gene	58881472	58885374	58881472	ID=Msa0740060;Name=Msa0740060
chr5_1	mRNA	58881472	58885374	58881472	ID=Msa0740060-mRNA-1;Parent=Msa0740060;Name=Msa0740060-mRNA-1;_AED=0.02;_eAED=0.02;_QI=114\|0.25\|0.4\|1\|1\|1\|5\|0\|797
chr5_1	exon	58881472	58881850	58881472	ID=Msa0740060-mRNA-1:exon:16810;Parent=Msa0740060-mRNA-1
chr5_1	exon	58882204	58882286	58882204	ID=Msa0740060-mRNA-1:exon:16809;Parent=Msa0740060-mRNA-1
chr5_1	exon	58882387	58882460	58882387	ID=Msa0740060-mRNA-1:exon:16808;Parent=Msa0740060-mRNA-1
chr5_1	exon	58882712	58884415	58882712	ID=Msa0740060-mRNA-1:exon:16807;Parent=Msa0740060-mRNA-1
chr5_1	exon	58885107	58885374	58885107	ID=Msa0740060-mRNA-1:exon:16806;Parent=Msa0740060-mRNA-1
chr5_1	five_prime_UTR	58885261	58885374	58885261	ID=Msa0740060-mRNA-1:five_prime_utr;Parent=Msa0740060-mRNA-1
chr5_1	CDS	58885107	58885260	58885107	ID=Msa0740060-mRNA-1:cds;Parent=Msa0740060-mRNA-1
chr5_1	CDS	58882712	58884415	58882712	ID=Msa0740060-mRNA-1:cds;Parent=Msa0740060-mRNA-1
chr5_1	CDS	58882387	58882460	58882387	ID=Msa0740060-mRNA-1:cds;Parent=Msa0740060-mRNA-1
chr5_1	CDS	58882204	58882286	58882204	ID=Msa0740060-mRNA-1:cds;Parent=Msa0740060-mRNA-1
chr5_1	CDS	58881472	58881850	58881472	ID=Msa0740060-mRNA-1:cds;Parent=Msa0740060-mRNA-1

Gene Sequence

>Msa0740060

ATGGACGTGAAGAAGAGTGAGAATCAAACAAGTTTGATTTTCTGTGTCAATGGTGAAAAGTTTGAGTTATCCAAAGTTGATCCGTCAACCACTTTGCTTGAGTTCTTACGTACTCAAACTCAATTCAAGAGTGTTAAACTCGGTTGTGGTGAAGGTGGTTGCGGAGCTTGTGTAGTTTTAGTCTCCAAATATGATCCATTGCTCGACAGAGTTGAGGATTTTACCGCGAGCTCTTGCCTCACACTACTTTGTAGCATACATGGATGTTCAATAACAACAAGTGAAGGCATTGGAAACAGCAAACAAGGATTCCATTCAATTCATGAAAGATTTGCAGGATTCCATGCTTCGCAATGCGGTTTCTGTACTCCCGGAATGTCTGTTTCCCTCTTCGGTGCTCTTGTCAACGCTGACAAGAGCAATTCTCCTGAGCCACCACCTGGTGTCTCAAAAATCACCGTTTCCAAGGCTGAAAAATCTATTGCAGGGAATCTTTGTCGCTGCACTGGTTACCGACCGATTGCTGATGCCTGCAAAAGTTTTGCAGCTGATGTTGATATGGAGGATCTCGGTTTGAACTCTTTCTGGAAAAAGGGAGAGAGCAAAGAATCGAAGCTTAGTAAGTTGCCTCGATACGATCGTGATCACAAGAATATCGAATTTCCTATGTTTTTGAAGGAAGTCAAACCTGATTTGTTTATAGCTTCTGAGAAACATAGTTGGAATAAACCTACTAGTTTAGAGGAGCTTCAAAGTTTATTGGAATTAAACCATGCCAATGAAACAAAGATAAAAGTTGTTGTTAATAATACTGGTATGGGATATTACAAAGATAAACAAGGCTATGATAAGTATATTGATATAAGTGGAATTTCTGAGCTTTCAAAAATCAAAAGGGATCAATCAGGGATTGAAATTGGAGCAGCGGTGAGTATATCTAAAGCAATTGAAGCATTACAGAAAGAAAGCACGAGTGATTTTATCTCAGATTTTGTGATGATACTTGAAAAGATTGCTGATCATATGAGCAAAGTTGCGACGGGTTTTATTCGGAACACGGCTAGTGTAGGTGGCAATCTGGTGATGGCGCAAAAGAATAAGTTTCCTTCGGATATAGTTACTATACTTCTTGCTGTGGATTCAATGGTTCACATAATGACTGGTGCAAAGTTTGAATGGCTTGCATTGGAGGAGTTTCTTGAGAGACCACCGTTAGGTTTTGAAAGTGTTCTTTTAAGCATTAAGATTCCTAGTATCGAACTCTATACAAGCGAATCTTCGGAGACAAGAAGTAGTAAAGTCCTCTTTGAAACCTACCGTGCTTCTCCTCGACCGCTTGGAAACGCGCTTTCTTACTTAAATGCTGCTTTCCTTGTTCAGGTGTCTCCTTGCAAGGATACTCATGAAACCATGATAGATACTTGTAGGTTGTCTTTTGGTGGTTTTAGGAATAAGCATGCAATCAGAGCTAAACATGTTGAGAAGTTCTTATCAGGAAAGTCGTTAAGTGTTAGCAACCTGTATGAAGCTATCAACTTGCTTACAGATACTGCCGCTATTACACCTCAAGATGAAACCTTGACACATGGTTACCTTTCGAGTTTAGCAGTTGGTTTTATTTTTCAGTTCTTTAATTCACAGATTGAAAGTCCTGCAAGGATAACCAATGGTTATTTAAATGGATATACTCATTTGCCTTCGGCCGAGGCTTCCGACATAAAAGAGAATCAGAAGCAGGTGAAGCATAACAGATTTCCTACTTTATTGTCGTCCGGGAAGCAAGTCTTTGAAGCAGGCACCGAGTATAATCCGATTGGCGAGCCAGTCACAAAATCTGGTGCTGCGCTACAAGCTTCAGTTGGTCAACTTGTTGGTCAACTAGCAAAATTGATGGGATGTTATGTTGTTGGAAGTGCTGGAAGTAAATATAAGGTTGATATTTTGAAGACCAAGTTTGGGTTTGATGAGGCCTTTAATTACAAGGAGGAACAAGACCTAGATGGAACATTGAAGAAGTACTTTCCTGAAGGAATAGACATATACTTTGACAATGTTGGTGGAGACATGCTTGAAGCAGCCCTTCTTAACATGAGACGCCGCGGTCGAATTGTGGTGGCTGGAATGATCTCACAATATGAACTTGATGAACCTCAAGGCATAAAAAACTTAATCAACATCATATACAAGCAGATTCAAGTAGATGCATTCACAGTATATGATTACTATCACTTATATCCAAAGTTTTTGGACACAATTTTGCCTTATGTTAGGGAAGGGAAGATGACATATGTTGAAGATATAGCTAAAGGGATTGAGAGTGGGCCAGCTGCATTAGAAGCAATGTTCACAGGCAAAAGTGCTGGCAAACAAGTTGTTTTAGTTGCTGATGAATAA

Protein sequence

>Msa0740060

MDVKKSENQTSLIFCVNGEKFELSKVDPSTTLLEFLRTQTQFKSVKLGCGEGGCGACVVLVSKYDPLLDRVEDFTASSCLTLLCSIHGCSITTSEGIGNSKQGFHSIHERFAGFHASQCGFCTPGMSVSLFGALVNADKSNSPEPPPGVSKITVSKAEKSIAGNLCRCTGYRPIADACKSFAADVDMEDLGLNSFWKKGESKESKLSKLPRYDRDHKNIEFPMFLKEVKPDLFIASEKHSWNKPTSLEELQSLLELNHANETKIKVVVNNTGMGYYKDKQGYDKYIDISGISELSKIKRDQSGIEIGAAVSISKAIEALQKESTSDFISDFVMILEKIADHMSKVATGFIRNTASVGGNLVMAQKNKFPSDIVTILLAVDSMVHIMTGAKFEWLALEEFLERPPLGFESVLLSIKIPSIELYTSESSETRSSKVLFETYRASPRPLGNALSYLNAAFLVQVSPCKDTHETMIDTCRLSFGGFRNKHAIRAKHVEKFLSGKSLSVSNLYEAINLLTDTAAITPQDETLTHGYLSSLAVGFIFQFFNSQIESPARITNGYLNGYTHLPSAEASDIKENQKQVKHNRFPTLLSSGKQVFEAGTEYNPIGEPVTKSGAALQASVGQLVGQLAKLMGCYVVGSAGSKYKVDILKTKFGFDEAFNYKEEQDLDGTLKKYFPEGIDIYFDNVGGDMLEAALLNMRRRGRIVVAGMISQYELDEPQGIKNLINIIYKQIQVDAFTVYDYYHLYPKFLDTILPYVREGKMTYVEDIAKGIESGPAALEAMFTGKSAGKQVVLVADE*