AlfalfaGEDB | Msa0452810

M. sativa cultivar zhongmu-4 / Msa0452810

KEGG: K13108
GO: GO:0003674 GO:0003676 GO:0003723 GO:0003729 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0005737 GO:0005829 GO:0006139 GO:0006396 GO:0006725 GO:0006807 GO:0008150 GO:0008152 GO:0008283 GO:0009507 GO:0009536 GO:0009892 GO:0009987 GO:0010033 GO:0010467 GO:0010468 GO:0010605 GO:0010608 GO:0010629 GO:0014070 GO:0016070 GO:0016441 GO:0016458 GO:0019222 GO:0031047 GO:0031050 GO:0034641 GO:0035194 GO:0035195 GO:0035196 GO:0040008 GO:0040029 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043331 GO:0044237 GO:0044238 GO:0044424 GO:0044444 GO:0044464 GO:0046483 GO:0048519 GO:0048638 GO:0050789 GO:0050793 GO:0050896 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0070918 GO:0071310 GO:0071359 GO:0071407 GO:0071704 GO:0090304 GO:0097159 GO:1901360 GO:1901363 GO:1901698 GO:1901699
PFAM: PF00498.29

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452810	XP_024633593.1	100.000	60	0	0	1	60	205	264	9.11e-35	128

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452810	sp\|Q8W4D8\|DDL_ARATH	84.211	57	9	0	1	57	257	313	5.44e-29	107

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452810	G7J1A2	100.000	60	0	0	1	60	267	326	1.31e-34	128

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0050930	Msa0452810	-0.810589	1.069253e-50	-8.615850e-47
Msa0094600	Msa0452810	0.800541	1.373172e-48	-8.615850e-47
Msa0133980	Msa0452810	0.830585	2.702701e-55	-8.615850e-47
Msa0158130	Msa0452810	0.808773	2.626827e-50	-8.615850e-47
Msa0175050	Msa0452810	-0.800771	1.232514e-48	-8.615850e-47
Msa0265230	Msa0452810	0.821152	4.699678e-53	-8.615850e-47
Msa0277420	Msa0452810	-0.803394	3.560391e-49	-8.615850e-47
Msa0319130	Msa0452810	-0.812375	4.376185e-51	-8.615850e-47
Msa0365490	Msa0452810	-0.824267	8.854658e-54	-8.615850e-47
Msa0388030	Msa0452810	0.815707	8.051744e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452810	MtrunA17_Chr3g0097951	100.000	60	0	0	1	60	267	326	2.53e-38	128

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0452810	AT3G20550.1	84.211	57	9	0	1	57	257	313	5.53e-30	107

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Find 44 sgRNAs with CRISPR-Local

Find 190 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AACATGCTGTTATTCAATTC+CGG	0.445183	3_3:-42229711	Msa0452810:intron
AACTTTGGCGATGTATATAT+AGG	0.346821	3_3:+42229800	None:intergenic
AAGAGGGAATACACAAAACT+TGG	0.470484	3_3:+42228518	None:intergenic
AAGGCTCTGACATTCTCATT+TGG	0.389171	3_3:+42228435	None:intergenic
ACTTTGGCGATGTATATATA+GGG	0.313226	3_3:+42229801	None:intergenic
AGGATGGTACAGATTTGGAG+AGG	0.702925	3_3:+42228594	None:intergenic
AGGCCTTACATAATGGACCT+CGG	0.670855	3_3:-42229441	Msa0452810:CDS
ATAATACCGTTGAGGTTCAA+TGG	0.452577	3_3:+42229260	None:intergenic
ATAGTCCCATTGAACCTCAA+CGG	0.667088	3_3:-42229266	Msa0452810:CDS
ATCACTTCTGATGAGCAGGA+TGG	0.626882	3_3:+42228578	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ACTTTGGCGATGTATATATA+GGG	+	chr3_3:42228320-42228339	None:intergenic	30.0%
AACTTTGGCGATGTATATAT+AGG	+	chr3_3:42228321-42228340	None:intergenic	30.0%
AACATGCTGTTATTCAATTC+CGG	-	chr3_3:42228407-42228426	Msa0452810:three_prime_UTR	30.0%
TCGCTAAATTAGAGAAATAC+CGG	+	chr3_3:42228429-42228448	None:intergenic	30.0%
GTATGATAGTAAAGCAAACA+AGG	-	chr3_3:42228559-42228578	Msa0452810:three_prime_UTR	30.0%
AAAACATTCGTTAATGTGAG+TGG	-	chr3_3:42228710-42228729	Msa0452810:intron	30.0%
TCAACGGTATTATGAACTTA+GGG	-	chr3_3:42228868-42228887	Msa0452810:intron	30.0%
TCCTCAATCTAAGTACTTAA+AGG	+	chr3_3:42229118-42229137	None:intergenic	30.0%
AATGGTAAACTCATTTCTGT+AGG	+	chr3_3:42229356-42229375	None:intergenic	30.0%
GACTTGATTAGAAAAACTAC+TGG	+	chr3_3:42229581-42229600	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr3_3	gene	42228293	42229847	42228293	ID=Msa0452810;Name=Msa0452810
chr3_3	mRNA	42228293	42229847	42228293	ID=Msa0452810-mRNA-1;Parent=Msa0452810;Name=Msa0452810-mRNA-1;_AED=0.10;_eAED=0.10;_QI=164\|0.75\|0.8\|1\|0.75\|0.8\|5\|334\|60
chr3_3	exon	42228293	42228672	42228293	ID=Msa0452810-mRNA-1:exon:7693;Parent=Msa0452810-mRNA-1
chr3_3	exon	42229219	42229289	42229219	ID=Msa0452810-mRNA-1:exon:7692;Parent=Msa0452810-mRNA-1
chr3_3	exon	42229416	42229461	42229416	ID=Msa0452810-mRNA-1:exon:7691;Parent=Msa0452810-mRNA-1
chr3_3	exon	42229560	42229607	42229560	ID=Msa0452810-mRNA-1:exon:7690;Parent=Msa0452810-mRNA-1
chr3_3	exon	42229712	42229847	42229712	ID=Msa0452810-mRNA-1:exon:7689;Parent=Msa0452810-mRNA-1
chr3_3	five_prime_UTR	42229712	42229847	42229712	ID=Msa0452810-mRNA-1:five_prime_utr;Parent=Msa0452810-mRNA-1
chr3_3	five_prime_UTR	42229580	42229607	42229580	ID=Msa0452810-mRNA-1:five_prime_utr;Parent=Msa0452810-mRNA-1
chr3_3	CDS	42229560	42229579	42229560	ID=Msa0452810-mRNA-1:cds;Parent=Msa0452810-mRNA-1
chr3_3	CDS	42229416	42229461	42229416	ID=Msa0452810-mRNA-1:cds;Parent=Msa0452810-mRNA-1
chr3_3	CDS	42229219	42229289	42229219	ID=Msa0452810-mRNA-1:cds;Parent=Msa0452810-mRNA-1
chr3_3	CDS	42228627	42228672	42228627	ID=Msa0452810-mRNA-1:cds;Parent=Msa0452810-mRNA-1
chr3_3	three_prime_UTR	42228293	42228626	42228293	ID=Msa0452810-mRNA-1:three_prime_utr;Parent=Msa0452810-mRNA-1

Gene Sequence	>Msa0452810 ATGATAGTAAAGCAAACAAGGCCTTACATAATGGACCTCGGAAGCACAAACAAAACATTCGTTAATGATAGTCCCATTGAACCTCAACGGTATTATGAACTTAGGGAGCAGGACACCATTAAATTTGGTAATAGTAGCCGAGAATATGTATTACTGCACGAGAACTCTGCTTCTGCTTCGTGA
Protein sequence	>Msa0452810 MIVKQTRPYIMDLGSTNKTFVNDSPIEPQRYYELREQDTIKFGNSSREYVLLHENSASAS*