AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0740120

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740120 MtrunA17_Chr5g0440341 99.017 407 4 0 1 407 1 407 0.0 841
Msa0740120 MtrunA17_Chr7g0254001 72.441 381 104 1 26 406 13 392 0.0 549
Msa0740120 MtrunA17_Chr7g0259501 58.901 382 144 6 30 406 36 409 1.06e-158 453
Msa0740120 MtrunA17_Chr1g0185861 58.005 381 147 6 31 406 41 413 2.50e-152 437
Msa0740120 MtrunA17_Chr4g0002921 76.374 182 43 0 29 210 23 204 1.69e-100 303
Msa0740120 MtrunA17_Chr3g0112351 42.697 89 48 1 251 339 6 91 1.68e-17 77.8
Msa0740120 MtrunA17_Chr5g0394261 31.447 159 88 5 183 339 521 660 3.30e-14 74.7
Msa0740120 MtrunA17_Chr7g0259851 27.473 182 101 6 183 362 511 663 7.79e-14 73.6
Msa0740120 MtrunA17_Chr1g0205751 30.818 159 89 5 183 339 524 663 1.64e-13 72.4
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0740120 AT3G03740.1 71.139 395 108 3 12 404 31 421 0.0 574
Msa0740120 AT5G21010.1 68.672 399 120 3 13 406 10 408 0.0 558
Msa0740120 AT3G43700.1 66.015 409 136 1 1 406 5 413 0.0 550
Msa0740120 AT3G43700.2 66.193 352 116 1 1 349 5 356 5.80e-174 490
Msa0740120 AT3G43700.3 66.954 348 112 1 1 345 5 352 3.31e-173 488
Msa0740120 AT3G06190.1 55.746 409 170 5 2 406 3 404 4.69e-157 449
Msa0740120 AT5G19000.1 56.430 381 155 5 30 406 32 405 6.23e-149 428
Msa0740120 AT5G19000.3 56.430 381 155 5 30 406 32 405 6.23e-149 428
Msa0740120 AT2G39760.1 54.615 390 169 5 21 406 14 399 3.94e-148 426
Msa0740120 AT5G19000.2 51.683 416 155 6 30 406 32 440 1.29e-141 411
Msa0740120 AT3G06190.5 58.529 340 135 3 2 339 3 338 3.18e-140 404
Msa0740120 AT2G39760.4 57.453 322 133 2 21 341 14 332 3.64e-133 386
Msa0740120 AT2G39760.3 57.453 322 133 2 21 341 14 332 3.64e-133 386
Msa0740120 AT2G39760.2 57.453 322 133 2 21 341 14 332 6.01e-133 385
Msa0740120 AT3G06190.4 61.961 255 96 1 2 255 3 257 3.55e-109 323
Msa0740120 AT3G06190.3 61.961 255 96 1 2 255 3 257 3.81e-109 323
Msa0740120 AT3G06190.2 59.770 261 103 1 2 260 3 263 3.96e-108 320
Msa0740120 AT5G19330.1 31.088 193 105 7 195 385 535 701 2.61e-16 81.6
Msa0740120 AT5G13060.1 28.571 175 106 4 194 365 561 719 8.28e-13 70.9
Msa0740120 AT3G56230.1 28.834 163 101 4 209 369 121 270 5.17e-11 63.5

Find 133 sgRNAs with CRISPR-Local

Find 367 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
GTCATGGCGGTTGTTTATTT+AGG 0.177620 5_1:-58933387 None:intergenic
ACACTAATGTTTGCAGAATT+AGG 0.238047 5_1:+58938247 Msa0740120:three_prime_UTR
GCTCTTCTGCAATATACTTT+TGG 0.256516 5_1:+58938129 Msa0740120:three_prime_UTR
TCCTTATACCTTGAAATATA+AGG 0.259361 5_1:+58933782 Msa0740120:CDS
CCCTTATATTTCAAGGTATA+AGG 0.262839 5_1:-58933783 None:intergenic
TCATGGCGGTTGTTTATTTA+GGG 0.277292 5_1:-58933386 None:intergenic
TGTCGGAGATGATGCGTTTC+CGG 0.295840 5_1:-58933409 None:intergenic
ATCACACTTTGGTGCACTAT+TGG 0.301896 5_1:+58935339 Msa0740120:CDS
TGTGATCCAATGTCAGATTC+TGG 0.306920 5_1:-58935322 None:intergenic
GGATAATTCTGCGTATGTTT+CGG 0.314889 5_1:+58933635 Msa0740120:CDS
GCTATCAACGTCTCCGAAAC+TGG 0.316312 5_1:-58935824 None:intergenic
GAATTGGGGAAGAAGTGTTT+TGG 0.345004 5_1:-58933327 None:intergenic
TTATCGAGCGCGAGATCGTT+GGG 0.358029 5_1:-58933461 None:intergenic
TGACGTCCAGTTCAAAAGTA+TGG 0.360866 5_1:-58938169 None:intergenic
CAGAATTAGGTTCAATAGAA+TGG 0.379209 5_1:+58938260 Msa0740120:three_prime_UTR
TAGTTCATGTTTAAGTTAGA+AGG 0.380611 5_1:+58938396 Msa0740120:three_prime_UTR
CATGCTACCCTTATATTTCA+AGG 0.389146 5_1:-58933790 None:intergenic
TTAGCTGCAGCAGACAAGTA+TGG 0.390342 5_1:+58935854 Msa0740120:CDS
TACTCGCTCGCAAAGGGAAT+GGG 0.413555 5_1:+58933525 Msa0740120:CDS
GAGATCTTGAAGACAGTTGC+TGG 0.421772 5_1:+58937757 Msa0740120:CDS
TCGATAACGCAAACGGTTAA+CGG 0.437798 5_1:+58933477 Msa0740120:CDS
AGTGATAATGTTGAAAGAAT+GGG 0.442867 5_1:+58937942 Msa0740120:three_prime_UTR
TCAGATGGTGGTGACACAAT+TGG 0.443947 5_1:+58937838 Msa0740120:CDS
TCTTTCAACACATAAATACT+TGG 0.446301 5_1:-58938428 None:intergenic
AGATGATGCGTTTCCGGTCA+TGG 0.446701 5_1:-58933403 None:intergenic
GTCACCACCATCTGAAAGTT+GGG 0.448909 5_1:-58937830 None:intergenic
CTATTGAAACATAGAGAAGT+TGG 0.449354 5_1:-58938004 None:intergenic
GTGGCTGGGGAGAAGTTTCC+TGG 0.449811 5_1:+58935394 Msa0740120:CDS
AGTATTTATGTGTTGAAAGA+TGG 0.451381 5_1:+58938431 Msa0740120:three_prime_UTR
TTTCAAGAGAGCGATCAAAA+TGG 0.451722 5_1:-58933755 None:intergenic
CCATGTCCACCTCTTCTGTA+AGG 0.453653 5_1:-58935775 None:intergenic
CCTTATACCTTGAAATATAA+GGG 0.454581 5_1:+58933783 Msa0740120:CDS
CCTTTGCGAGCGAGTACCCT+TGG 0.463249 5_1:-58933518 None:intergenic
GCTTGTTGATCAGAGTGGTC+AGG 0.473140 5_1:+58933713 Msa0740120:CDS
GAGGGTGATAGTTGCAGTAC+AGG 0.482747 5_1:+58937784 Msa0740120:CDS
TCCTGGTCATAAGTTGGTGT+TGG 0.483144 5_1:+58935411 Msa0740120:CDS
GTGATCCAATGTCAGATTCT+GGG 0.484115 5_1:-58935321 None:intergenic
TGTCACCACCATCTGAAAGT+TGG 0.485682 5_1:-58937831 None:intergenic
TGTTTGAACAAAGGATATCA+AGG 0.491503 5_1:-58938227 None:intergenic
TTTGATCGCTCTCTTGAAAG+TGG 0.498995 5_1:+58933759 Msa0740120:CDS
TCCTCCGGATTCTTCCCATC+GGG 0.499966 5_1:-58933615 None:intergenic
AAGTGATAATGTTGAAAGAA+TGG 0.501300 5_1:+58937941 Msa0740120:three_prime_UTR
CTATCCCGATGGGAAGAATC+CGG 0.502018 5_1:+58933611 Msa0740120:CDS
CTCGCAAAGGGAATGGGAGT+TGG 0.506650 5_1:+58933531 Msa0740120:CDS
AAATAAACAACCGCCATGAC+CGG 0.506651 5_1:+58933390 Msa0740120:exon
CAACTGTACAGTTGGAGTTG+TGG 0.508711 5_1:+58935258 Msa0740120:CDS
TCGCACAAATTCTTGATCCA+AGG 0.511740 5_1:+58933501 Msa0740120:CDS
AAGACAGTTGCTGGCTGTGA+GGG 0.511783 5_1:+58937766 Msa0740120:CDS
GAGGATAACGGCGCCGGTGA+CGG 0.513532 5_1:-58933438 None:intergenic
TTGAAAATCAACTGTACAGT+TGG 0.516183 5_1:+58935250 Msa0740120:CDS
GTACTCGCTCGCAAAGGGAA+TGG 0.516556 5_1:+58933524 Msa0740120:CDS
GTTATCGAGCGCGAGATCGT+TGG 0.516701 5_1:-58933462 None:intergenic
TTCATCGCGTTGGCGAGTGA+AGG 0.518184 5_1:+58933660 Msa0740120:CDS
GAGTGGTCAGGGGAAGCATA+AGG 0.519043 5_1:+58933725 Msa0740120:CDS
TTCAAAAGTATGGATGGACT+TGG 0.519941 5_1:-58938159 None:intergenic
GAAAGAATGGGGATAGGAAA+AGG 0.520832 5_1:+58937954 Msa0740120:three_prime_UTR
AGGTAGACTAGATGCTATGC+AGG 0.523812 5_1:+58938046 Msa0740120:three_prime_UTR
AAGATCTCTGACTGTAGCCA+TGG 0.528447 5_1:-58937742 None:intergenic
TGATATCTGTTGTCTCGCAT+TGG 0.528821 5_1:+58937883 Msa0740120:exon
TTAACTCTGTGGCATGGCAA+TGG 0.529102 5_1:-58935964 None:intergenic
GAGATCGTTGGGGAGGATAA+CGG 0.531477 5_1:-58933450 None:intergenic
CCTTACAGAAGAGGTGGACA+TGG 0.531958 5_1:+58935775 Msa0740120:CDS
CAAGGGTACTCGCTCGCAAA+GGG 0.532648 5_1:+58933519 Msa0740120:CDS
TCCGACACCATCACCGTCAC+CGG 0.533301 5_1:+58933425 Msa0740120:CDS
TCTGACATTGGATCACACTT+TGG 0.535953 5_1:+58935328 Msa0740120:CDS
GAAGTTTCCTGGTCATAAGT+TGG 0.536194 5_1:+58935405 Msa0740120:CDS
CTTGTTGATCAGAGTGGTCA+GGG 0.537245 5_1:+58933714 Msa0740120:CDS
CGCGTTGGCGAGTGAAGGAA+CGG 0.541562 5_1:+58933665 Msa0740120:CDS
TGCAGCAGACAAGTATGGCT+TGG 0.543450 5_1:+58935859 Msa0740120:CDS
GGTTATGTAAATGTCTCCGA+TGG 0.544256 5_1:+58938067 Msa0740120:three_prime_UTR
GCACTATTGGAGAATAATGA+AGG 0.550810 5_1:+58935352 Msa0740120:CDS
GCGATCTACTTCTATCCCGA+TGG 0.552996 5_1:+58933600 Msa0740120:CDS
AACGGCGCCGGTGACGGTGA+TGG 0.554496 5_1:-58933432 None:intergenic
TTTGCTTCTCAAAATCTAGC+CGG 0.554738 5_1:+58936004 Msa0740120:CDS
CGCACAAATTCTTGATCCAA+GGG 0.554858 5_1:+58933502 Msa0740120:CDS
ATCCTCCGGATTCTTCCCAT+CGG 0.555082 5_1:-58933616 None:intergenic
ATATCAAGGGACAATGCAGT+TGG 0.556162 5_1:-58938213 None:intergenic
AGGGTGATAGTTGCAGTACA+GGG 0.557225 5_1:+58937785 Msa0740120:CDS
TCTCGTCTTTGCAAGGACAT+TGG 0.559559 5_1:+58935905 Msa0740120:CDS
TCACCGTCGGAGGGTATCAG+TGG 0.564407 5_1:+58933577 Msa0740120:CDS
CTCGCGCTCGATAACGCAAA+CGG 0.564722 5_1:+58933470 Msa0740120:CDS
GTCAGCCAAGGTCAAAATGT+TGG 0.566131 5_1:-58935942 None:intergenic
GCCGGTGACGGTGATGGTGT+CGG 0.567480 5_1:-58933426 None:intergenic
TGTGTTGAAAGATGGCAGAA+TGG 0.567639 5_1:+58938439 Msa0740120:three_prime_UTR
TGAAACATAGAGAAGTTGGC+AGG 0.568743 5_1:-58938000 None:intergenic
GTGATAATGTTGAAAGAATG+GGG 0.569071 5_1:+58937943 Msa0740120:three_prime_UTR
AATGTTGAAAGAATGGGGAT+AGG 0.571394 5_1:+58937948 Msa0740120:three_prime_UTR
CAGAGATTCCCTTACAGAAG+AGG 0.571846 5_1:+58935766 Msa0740120:CDS
GTTGGGGAGGATAACGGCGC+CGG 0.572963 5_1:-58933444 None:intergenic
TGTGACAGATTTAGAACCAA+AGG 0.576907 5_1:+58935501 Msa0740120:CDS
GAAGACAGTTGCTGGCTGTG+AGG 0.579653 5_1:+58937765 Msa0740120:CDS
GTCCAGTTCAAAAGTATGGA+TGG 0.579976 5_1:-58938165 None:intergenic
ATAGGAAAAGGCAAAAGAGA+AGG 0.580863 5_1:+58937966 Msa0740120:three_prime_UTR
ATGGTGGTGACACAATTGGC+AGG 0.581902 5_1:+58937842 Msa0740120:CDS
CATGTCCACCTCTTCTGTAA+GGG 0.584025 5_1:-58935774 None:intergenic
CGATCTACTTCTATCCCGAT+GGG 0.588650 5_1:+58933601 Msa0740120:CDS
CATGTCCCAGAATCTGACAT+TGG 0.590035 5_1:+58935316 Msa0740120:CDS
CCAAGGGTACTCGCTCGCAA+AGG 0.590267 5_1:+58933518 Msa0740120:CDS
GTGCGAGTCTCGTCTTTGCA+AGG 0.590794 5_1:+58935898 Msa0740120:CDS
AAACATTAGTGTTTGAACAA+AGG 0.591466 5_1:-58938236 None:intergenic
AAAGTGTTAATGTTTCTGGA+TGG 0.592326 5_1:+58938352 Msa0740120:three_prime_UTR
GCCAACACCAACTTATGACC+AGG 0.592965 5_1:-58935412 None:intergenic
GTTATGTAAATGTCTCCGAT+GGG 0.594437 5_1:+58938068 Msa0740120:three_prime_UTR
GTGTGGGCCCAACTTTCAGA+TGG 0.597445 5_1:+58937823 Msa0740120:CDS
GATGGCAGAATGGATTGTAG+TGG 0.598277 5_1:+58938449 Msa0740120:three_prime_UTR
GTTTGAACAAAGGATATCAA+GGG 0.613734 5_1:-58938226 None:intergenic
AGATCTCTGACTGTAGCCAT+GGG 0.614943 5_1:-58937741 None:intergenic
AGATTCCCTTACAGAAGAGG+TGG 0.616072 5_1:+58935769 Msa0740120:CDS
TGGGCCCAACTTTCAGATGG+TGG 0.618037 5_1:+58937826 Msa0740120:CDS
ACATGAATAGAGTTAAGCTG+TGG 0.618655 5_1:-58935298 None:intergenic
CACCGTCGGAGGGTATCAGT+GGG 0.619698 5_1:+58933578 Msa0740120:CDS
GACTTGTTGCAGCTGTCATG+AGG 0.622166 5_1:+58937686 Msa0740120:intron
TCGAAATTCTGGAGATCTAG+CGG 0.629987 5_1:-58935434 None:intergenic
GCAGCTGTCATGAGGTCGGA+TGG 0.631226 5_1:+58937694 Msa0740120:intron
TGTTGCAGCTGTCATGAGGT+CGG 0.632813 5_1:+58937690 Msa0740120:intron
GGCATGGCAATGGTCAGCCA+AGG 0.641941 5_1:-58935954 None:intergenic
ACATACGCAGAATTATCCTC+CGG 0.650784 5_1:-58933630 None:intergenic
TCTGTAGATAAAATGCAGCA+TGG 0.650987 5_1:-58935747 None:intergenic
CTAAACAACTTACACCCCAT+CGG 0.651093 5_1:-58938083 None:intergenic
CGAGCGCGAGATCGTTGGGG+AGG 0.656980 5_1:-58933457 None:intergenic
CAGACAAGTATGGCTTGGAG+AGG 0.667523 5_1:+58935864 Msa0740120:CDS
CATGAATAGAGTTAAGCTGT+GGG 0.672460 5_1:-58935297 None:intergenic
CTCACGCTTGTTGATCAGAG+TGG 0.674203 5_1:+58933708 Msa0740120:CDS
TATCGAGCGCGAGATCGTTG+GGG 0.681767 5_1:-58933460 None:intergenic
TGGCACGGATATGGACACAC+AGG 0.686971 5_1:+58935471 Msa0740120:CDS
CGCCCACTGATACCCTCCGA+CGG 0.690240 5_1:-58933580 None:intergenic
GGGTGATAGTTGCAGTACAG+GGG 0.705570 5_1:+58937786 Msa0740120:CDS
TGAAATATAAGGGTAGCATG+TGG 0.707701 5_1:+58933793 Msa0740120:CDS
TCCCGATGGGAAGAATCCGG+AGG 0.710801 5_1:+58933614 Msa0740120:CDS
TTGTTGATCAGAGTGGTCAG+GGG 0.711385 5_1:+58933715 Msa0740120:CDS
TTATGTAAATGTCTCCGATG+GGG 0.718417 5_1:+58938069 Msa0740120:three_prime_UTR
AACTTAAACATGAACTAACG+AGG 0.725624 5_1:-58938390 None:intergenic
TGATGCGTTTCCGGTCATGG+CGG 0.738810 5_1:-58933400 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! AAAAACAATATAAATGATAA+AGG - chr5_1:58934921-58934940 None:intergenic 10.0%
!! GAAAAAGTAAAAAAAAAAAA+TGG - chr5_1:58936852-58936871 None:intergenic 10.0%
!!! TTTCAAATTTTGATTGTTTT+TGG + chr5_1:58933834-58933853 Msa0740120:intron 15.0%
!!! TAAATTATCATTGATTAAAG+TGG + chr5_1:58934985-58935004 Msa0740120:intron 15.0%
!!! TTCATTATAACTTTACATTT+TGG + chr5_1:58936287-58936306 Msa0740120:intron 15.0%
!!! TCATTATAACTTTACATTTT+GGG + chr5_1:58936288-58936307 Msa0740120:intron 15.0%
!! AAGTAAAAAAAAAAAATGGA+AGG - chr5_1:58936848-58936867 None:intergenic 15.0%
!! GAAAAAGTAAAGAAAATTAA+AGG - chr5_1:58937101-58937120 None:intergenic 15.0%
!!! CAAAATGAATATTTTTTACA+AGG - chr5_1:58938294-58938313 None:intergenic 15.0%
!!! TTTAATGTTGATGATAGTTT+GGG + chr5_1:58933857-58933876 Msa0740120:intron 20.0%
!!! TCTTTTATGAAATAGTCTAA+GGG - chr5_1:58934295-58934314 None:intergenic 20.0%
!! GTATACCAAATATAACTTTA+TGG + chr5_1:58934555-58934574 Msa0740120:intron 20.0%
!! ATTCTCCATAAAGTTATATT+TGG - chr5_1:58934563-58934582 None:intergenic 20.0%
!!! TAAATGATAAAGGCATATTT+TGG - chr5_1:58934911-58934930 None:intergenic 20.0%
!!! GTTTTAAAAATTTGTGAAAG+AGG + chr5_1:58934962-58934981 Msa0740120:intron 20.0%
!! AAAAATTTAGATCGAAATTC+TGG - chr5_1:58935448-58935467 None:intergenic 20.0%
!!! TTTCGATCTAAATTTTTTGA+TGG + chr5_1:58935451-58935470 Msa0740120:CDS 20.0%
!! TGATAAGAAAAGATCTTATT+TGG + chr5_1:58935670-58935689 Msa0740120:intron 20.0%
!!! GATAAGAAAAGATCTTATTT+GGG + chr5_1:58935671-58935690 Msa0740120:intron 20.0%
!!! ATAAGAAAAGATCTTATTTG+GGG + chr5_1:58935672-58935691 Msa0740120:intron 20.0%
!!! ATGAATCATCTTAATGTTTT+AGG - chr5_1:58936272-58936291 None:intergenic 20.0%
!!! CATTATAACTTTACATTTTG+GGG + chr5_1:58936289-58936308 Msa0740120:intron 20.0%
!! TGTTTATGTTTCATATATGT+CGG + chr5_1:58936406-58936425 Msa0740120:intron 20.0%
!! ATTATGGTAATAAGTAACTA+AGG - chr5_1:58936637-58936656 None:intergenic 20.0%
!!! GATGTTTTTTTTTCCATTTT+TGG - chr5_1:58936689-58936708 None:intergenic 20.0%
!! ATAGTAAATACTAGTAACTA+AGG - chr5_1:58936893-58936912 None:intergenic 20.0%
!!! ACTTTTCTATTTACCAAAAA+TGG + chr5_1:58936932-58936951 Msa0740120:intron 20.0%
!!! AGTAATATTATCTCCATTTT+TGG - chr5_1:58936948-58936967 None:intergenic 20.0%
!! ATCATTTGTATTCACTATTA+AGG - chr5_1:58937439-58937458 None:intergenic 20.0%
!!! TCTAAAATTTCAACACAAAA+GGG - chr5_1:58937526-58937545 None:intergenic 20.0%
!!! ATCTAAAATTTCAACACAAA+AGG - chr5_1:58937527-58937546 None:intergenic 20.0%
!!! TGTGTTGAAATTTTAGATAT+AGG + chr5_1:58937529-58937548 Msa0740120:intron 20.0%
!!! TTGAAATTTTAGATATAGGT+TGG + chr5_1:58937533-58937552 Msa0740120:intron 20.0%
!! TAATAATGCATGATTAAACA+TGG - chr5_1:58937589-58937608 None:intergenic 20.0%
!!! TCATGCATTATTAAAACTTT+TGG + chr5_1:58937596-58937615 Msa0740120:intron 20.0%
!!! AAACATTAACACTTTTTATG+AGG - chr5_1:58938347-58938366 None:intergenic 20.0%
!!! ATAAAAAGTGTTAATGTTTC+TGG + chr5_1:58938348-58938367 Msa0740120:three_prime_UTR 20.0%
!!! GATTTTGAATTTGATTTTGG+GGG - chr5_1:58933367-58933386 None:intergenic 25.0%
!!! GGATTTTGAATTTGATTTTG+GGG - chr5_1:58933368-58933387 None:intergenic 25.0%
!!! GGGATTTTGAATTTGATTTT+GGG - chr5_1:58933369-58933388 None:intergenic 25.0%
!!! AGGGATTTTGAATTTGATTT+TGG - chr5_1:58933370-58933389 None:intergenic 25.0%
! TCCTTATACCTTGAAATATA+AGG + chr5_1:58933782-58933801 Msa0740120:CDS 25.0%
! CCTTATACCTTGAAATATAA+GGG + chr5_1:58933783-58933802 Msa0740120:CDS 25.0%
!!! GTTTAATGTTGATGATAGTT+TGG + chr5_1:58933856-58933875 Msa0740120:intron 25.0%
! TTTGAATTTGATGTGAGTTT+GGG + chr5_1:58933890-58933909 Msa0740120:intron 25.0%
! CGAAAATAAGTTAAGCTTAA+CGG + chr5_1:58933947-58933966 Msa0740120:intron 25.0%
! TAATCTATAGTTTCTCTTAC+AGG - chr5_1:58934183-58934202 None:intergenic 25.0%
! GAAACTATAGATTAATGAGT+AGG + chr5_1:58934189-58934208 Msa0740120:intron 25.0%
!! CTCTTTTATGAAATAGTCTA+AGG - chr5_1:58934296-58934315 None:intergenic 25.0%
!! GATAAACCACATTCTTTTAA+AGG + chr5_1:58934315-58934334 Msa0740120:intron 25.0%
!! ATTACTCCTTTAAAAGAATG+TGG + chr5_1:58934433-58934452 Msa0740120:intron 25.0%
!! GATAAACCACATTCTTTTAA+AGG - chr5_1:58934315-58934334 None:intergenic 25.0%
!!! ATGTGGTTTATCTCTTTTTT+TGG + chr5_1:58934450-58934469 Msa0740120:intron 25.0%
! ACACCATAGATATAAAGTTA+GGG - chr5_1:58934754-58934773 None:intergenic 25.0%
! TACACCATAGATATAAAGTT+AGG - chr5_1:58934755-58934774 None:intergenic 25.0%
! TATAACCATATGATACATGA+AGG + chr5_1:58934790-58934809 Msa0740120:intron 25.0%
!!! TCTTGTTCATTTGTTTTTGT+AGG + chr5_1:58935164-58935183 Msa0740120:intron 25.0%
!!! CTTGTTCATTTGTTTTTGTA+GGG + chr5_1:58935165-58935184 Msa0740120:intron 25.0%
!!! TTGTTCATTTGTTTTTGTAG+GGG + chr5_1:58935166-58935185 Msa0740120:intron 25.0%
!!! ATCTAAATTTTTTGATGGCA+CGG + chr5_1:58935456-58935475 Msa0740120:CDS 25.0%
!!! TTTAGAACCAAAGGTTTTTA+AGG + chr5_1:58935510-58935529 Msa0740120:CDS 25.0%
!! GTTTTTACCTTAAAAACCTT+TGG - chr5_1:58935520-58935539 None:intergenic 25.0%
! ATGAAAAGAAGATGGTAAAA+GGG - chr5_1:58935568-58935587 None:intergenic 25.0%
!! TAAGAAAAGATCTTATTTGG+GGG + chr5_1:58935673-58935692 Msa0740120:intron 25.0%
!!! GATTTTGAGAAGCAAATTTT+AGG - chr5_1:58936000-58936019 None:intergenic 25.0%
! AAAACAAGTGATTAGTAAGT+AGG - chr5_1:58936034-58936053 None:intergenic 25.0%
!! TTTTCATTACTCGTGTTTAA+TGG - chr5_1:58936474-58936493 None:intergenic 25.0%
! ACGAGTAATGAAAAATACAT+GGG + chr5_1:58936480-58936499 Msa0740120:intron 25.0%
!!! TTTAACTTCCTTTTTTGAAC+AGG - chr5_1:58936585-58936604 None:intergenic 25.0%
!! TAAATCTTCAAAGCTTTTAC+TGG + chr5_1:58936601-58936620 Msa0740120:intron 25.0%
! GCTTTCTTAATTACCAAAAA+TGG + chr5_1:58936673-58936692 Msa0740120:intron 25.0%
! GAAAAAAAAACATCTGACAT+TGG + chr5_1:58936695-58936714 Msa0740120:intron 25.0%
! CAAAAACTAGAAGAGAAAAA+CGG - chr5_1:58937024-58937043 None:intergenic 25.0%
! AATGTTTCAAAATGCAAAGA+AGG - chr5_1:58937231-58937250 None:intergenic 25.0%
! GAAAGAAAATAACAAGAGAA+GGG - chr5_1:58937277-58937296 None:intergenic 25.0%
! AATCAATAAAAAGAAAGTGG+TGG - chr5_1:58937299-58937318 None:intergenic 25.0%
! AGCAATCAATAAAAAGAAAG+TGG - chr5_1:58937302-58937321 None:intergenic 25.0%
!!! AATTTTAGATATAGGTTGGT+TGG + chr5_1:58937537-58937556 Msa0740120:intron 25.0%
!! ATCTCTGATTCTTTTGTAAA+TGG + chr5_1:58937907-58937926 Msa0740120:three_prime_UTR 25.0%
!! AAGTGATAATGTTGAAAGAA+TGG + chr5_1:58937941-58937960 Msa0740120:three_prime_UTR 25.0%
!! AGTGATAATGTTGAAAGAAT+GGG + chr5_1:58937942-58937961 Msa0740120:three_prime_UTR 25.0%
! AAACATTAGTGTTTGAACAA+AGG - chr5_1:58938239-58938258 None:intergenic 25.0%
!! TAGTTCATGTTTAAGTTAGA+AGG + chr5_1:58938396-58938415 Msa0740120:three_prime_UTR 25.0%
! TCTTTCAACACATAAATACT+TGG - chr5_1:58938431-58938450 None:intergenic 25.0%
! AGTATTTATGTGTTGAAAGA+TGG + chr5_1:58938431-58938450 Msa0740120:three_prime_UTR 25.0%
CCCTTATATTTCAAGGTATA+AGG - chr5_1:58933786-58933805 None:intergenic 30.0%
GTTTGAATTTGATGTGAGTT+TGG + chr5_1:58933889-58933908 Msa0740120:intron 30.0%
TTGAATTTGATGTGAGTTTG+GGG + chr5_1:58933891-58933910 Msa0740120:intron 30.0%
!! AGCTTAACTTATTTTCGTGT+TGG - chr5_1:58933944-58933963 None:intergenic 30.0%
! ATTTAAAGCATTAGAGAGAG+AGG + chr5_1:58934008-58934027 Msa0740120:intron 30.0%
! TTTAAAGCATTAGAGAGAGA+GGG + chr5_1:58934009-58934028 Msa0740120:intron 30.0%
! TCTTCTCCTTTAAAAGAATG+TGG - chr5_1:58934324-58934343 None:intergenic 30.0%
!!! GAGCAGTTTAGTTTTTTTAG+AGG + chr5_1:58934362-58934381 Msa0740120:intron 30.0%
ATTCACCTATGTAATGTTCT+TGG - chr5_1:58934509-58934528 None:intergenic 30.0%
CATTACATAGGTGAATTAGA+AGG + chr5_1:58934513-58934532 Msa0740120:intron 30.0%
AGACCCTAACTTTATATCTA+TGG + chr5_1:58934748-58934767 Msa0740120:intron 30.0%
!!! TTCCTGTGAATTTTAGTTAC+TGG + chr5_1:58934846-58934865 Msa0740120:intron 30.0%
ATCCAGTAACTAAAATTCAC+AGG - chr5_1:58934851-58934870 None:intergenic 30.0%
!! TTATTTTACATCTGTCTCTG+AGG + chr5_1:58935017-58935036 Msa0740120:intron 30.0%
! TATTTTACATCTGTCTCTGA+GGG + chr5_1:58935018-58935037 Msa0740120:intron 30.0%
ACATTTGCAAACTCAAAGAA+CGG - chr5_1:58935054-58935073 None:intergenic 30.0%
!! TTTTCAAGCAATCATTCTTG+AGG - chr5_1:58935237-58935256 None:intergenic 30.0%
TTGAAAATCAACTGTACAGT+TGG + chr5_1:58935250-58935269 Msa0740120:CDS 30.0%
!!! TTCAGATGTTACTTTTGATG+TGG + chr5_1:58935375-58935394 Msa0740120:CDS 30.0%
CATGAAAAGAAGATGGTAAA+AGG - chr5_1:58935569-58935588 None:intergenic 30.0%
! CTTTTACCATCTTCTTTTCA+TGG + chr5_1:58935567-58935586 Msa0740120:intron 30.0%
GTAAAAGTAAACGGAAAATC+AGG - chr5_1:58935724-58935743 None:intergenic 30.0%
!! GATTTTCCGTTTACTTTTAC+AGG + chr5_1:58935724-58935743 Msa0740120:intron 30.0%
! ATCTAGTGATTTTCCAGTTT+CGG + chr5_1:58935811-58935830 Msa0740120:CDS 30.0%
TGATTAGTAAGTAGGTATAC+CGG - chr5_1:58936026-58936045 None:intergenic 30.0%
!!! ACTAATCACTTGTTTTTGTC+TGG + chr5_1:58936038-58936057 Msa0740120:intron 30.0%
! TTTCAGTAACAAGTGTTGTA+AGG - chr5_1:58936112-58936131 None:intergenic 30.0%
AATTCCGTAACTAGTTAGAT+TGG - chr5_1:58936333-58936352 None:intergenic 30.0%
TAGTTACGGAATTAATGACA+TGG + chr5_1:58936340-58936359 Msa0740120:intron 30.0%
TAATGACATGGCTAATTCTA+TGG + chr5_1:58936352-58936371 Msa0740120:intron 30.0%
CACGAGTAATGAAAAATACA+TGG + chr5_1:58936479-58936498 Msa0740120:intron 30.0%
! GAACATTTGAAACACATGAA+GGG - chr5_1:58936747-58936766 None:intergenic 30.0%
! AGAACATTTGAAACACATGA+AGG - chr5_1:58936748-58936767 None:intergenic 30.0%
AAAATCATGTTACACATTGC+AGG - chr5_1:58937126-58937145 None:intergenic 30.0%
! TGCAATGTGTAACATGATTT+TGG + chr5_1:58937125-58937144 Msa0740120:intron 30.0%
GGAAAGAAAATAACAAGAGA+AGG - chr5_1:58937278-58937297 None:intergenic 30.0%
AAAGTCCAAATTATCGAGAA+CGG - chr5_1:58937328-58937347 None:intergenic 30.0%
TTGTACATTGACATTCAATG+AGG + chr5_1:58937460-58937479 Msa0740120:intron 30.0%
! TAAACATGGATTTAGAACAG+AGG - chr5_1:58937575-58937594 None:intergenic 30.0%
ATAAGATGGTTCTTATGGTT+TGG + chr5_1:58937664-58937683 Msa0740120:intron 30.0%
! GTGATAATGTTGAAAGAATG+GGG + chr5_1:58937943-58937962 Msa0740120:three_prime_UTR 30.0%
CTATTGAAACATAGAGAAGT+TGG - chr5_1:58938007-58938026 None:intergenic 30.0%
!! GAAAGTGCTTTAGAAAAAGA+AGG + chr5_1:58938026-58938045 Msa0740120:three_prime_UTR 30.0%
GTTTGAACAAAGGATATCAA+GGG - chr5_1:58938229-58938248 None:intergenic 30.0%
TGTTTGAACAAAGGATATCA+AGG - chr5_1:58938230-58938249 None:intergenic 30.0%
ACACTAATGTTTGCAGAATT+AGG + chr5_1:58938247-58938266 Msa0740120:three_prime_UTR 30.0%
CAGAATTAGGTTCAATAGAA+TGG + chr5_1:58938260-58938279 Msa0740120:three_prime_UTR 30.0%
!! AAAGTGTTAATGTTTCTGGA+TGG + chr5_1:58938352-58938371 Msa0740120:three_prime_UTR 30.0%
AACTTAAACATGAACTAACG+AGG - chr5_1:58938393-58938412 None:intergenic 30.0%
! TTTTGTGAAGGGTAGAATTG+GGG - chr5_1:58933344-58933363 None:intergenic 35.0%
! GTTTTGTGAAGGGTAGAATT+GGG - chr5_1:58933345-58933364 None:intergenic 35.0%
TCATGGCGGTTGTTTATTTA+GGG - chr5_1:58933389-58933408 None:intergenic 35.0%
GGATAATTCTGCGTATGTTT+CGG + chr5_1:58933635-58933654 Msa0740120:CDS 35.0%
TTTCAAGAGAGCGATCAAAA+TGG - chr5_1:58933758-58933777 None:intergenic 35.0%
CATGCTACCCTTATATTTCA+AGG - chr5_1:58933793-58933812 None:intergenic 35.0%
TGAAATATAAGGGTAGCATG+TGG + chr5_1:58933793-58933812 Msa0740120:CDS 35.0%
AACACCTATCGTAGAAAAGA+CGG + chr5_1:58934044-58934063 Msa0740120:intron 35.0%
AGACGGTGAAAACTATGTTT+AGG + chr5_1:58934061-58934080 Msa0740120:intron 35.0%
! GTTTCTCTTACAGGTTTTCT+AGG - chr5_1:58934174-58934193 None:intergenic 35.0%
GCTTACCAAGAACATTACAT+AGG + chr5_1:58934501-58934520 Msa0740120:intron 35.0%
AATGCTAAACAATGCCTTCA+AGG + chr5_1:58934580-58934599 Msa0740120:intron 35.0%
TTGTTTAACCATTGCCTTGA+AGG - chr5_1:58934597-58934616 None:intergenic 35.0%
TGAAGCCTTCATGTATCATA+TGG - chr5_1:58934798-58934817 None:intergenic 35.0%
ATGATACATGAAGGCTTCAT+TGG + chr5_1:58934799-58934818 Msa0740120:intron 35.0%
! ATTTTACATCTGTCTCTGAG+GGG + chr5_1:58935019-58935038 Msa0740120:intron 35.0%
!!! GTTACAAGCGTTTTTTCAGA+CGG + chr5_1:58935188-58935207 Msa0740120:CDS 35.0%
CATGAATAGAGTTAAGCTGT+GGG - chr5_1:58935300-58935319 None:intergenic 35.0%
ACATGAATAGAGTTAAGCTG+TGG - chr5_1:58935301-58935320 None:intergenic 35.0%
GCACTATTGGAGAATAATGA+AGG + chr5_1:58935352-58935371 Msa0740120:CDS 35.0%
!!! ATGTTACTTTTGATGTGGCT+GGG + chr5_1:58935380-58935399 Msa0740120:CDS 35.0%
!!! ATTTTTTGATGGCACGGATA+TGG + chr5_1:58935462-58935481 Msa0740120:CDS 35.0%
! TGTGACAGATTTAGAACCAA+AGG + chr5_1:58935501-58935520 Msa0740120:CDS 35.0%
ACACTACCATGAAAAGAAGA+TGG - chr5_1:58935576-58935595 None:intergenic 35.0%
! TTTCATGGTAGTGTTAAGCA+CGG + chr5_1:58935582-58935601 Msa0740120:intron 35.0%
TCTGTAGATAAAATGCAGCA+TGG - chr5_1:58935750-58935769 None:intergenic 35.0%
TTTGCTTCTCAAAATCTAGC+CGG + chr5_1:58936004-58936023 Msa0740120:CDS 35.0%
!!! TTGTTTTTGTCTGGTTTGCA+TGG + chr5_1:58936047-58936066 Msa0740120:intron 35.0%
!! TGTTTTTGTCTGGTTTGCAT+GGG + chr5_1:58936048-58936067 Msa0740120:intron 35.0%
! CAACTTTGTTTAACTAGCAG+AGG - chr5_1:58936177-58936196 None:intergenic 35.0%
CTTGCCAATCTAACTAGTTA+CGG + chr5_1:58936326-58936345 Msa0740120:intron 35.0%
AAACATAAACAGTAAACCCC+TGG - chr5_1:58936397-58936416 None:intergenic 35.0%
!!! AACTTCCTTTTTTGAACAGG+TGG - chr5_1:58936582-58936601 None:intergenic 35.0%
AAGTCAGCAATGCATCATTA+TGG - chr5_1:58936653-58936672 None:intergenic 35.0%
AGCATTTCACATGATTAGAG+TGG - chr5_1:58936802-58936821 None:intergenic 35.0%
CTAATCATGTGAAATGCTGT+TGG + chr5_1:58936804-58936823 Msa0740120:intron 35.0%
! ACTAAGGTCTTTTACATAGC+AGG - chr5_1:58936877-58936896 None:intergenic 35.0%
AAGAGAAAAACGGACACATT+TGG - chr5_1:58937014-58937033 None:intergenic 35.0%
AACATTTCACGTGATTAGAG+TGG - chr5_1:58937054-58937073 None:intergenic 35.0%
GAAAATAACAAGAGAAGGGA+AGG - chr5_1:58937273-58937292 None:intergenic 35.0%
! CTTTTCCGTTCTCGATAATT+TGG + chr5_1:58937320-58937339 Msa0740120:intron 35.0%
TAGAACAGAGGATCAAAAGA+TGG - chr5_1:58937563-58937582 None:intergenic 35.0%
TATCCACATGCTTGATAAGA+TGG + chr5_1:58937650-58937669 Msa0740120:intron 35.0%
GCTTGATAAGATGGTTCTTA+TGG + chr5_1:58937659-58937678 Msa0740120:intron 35.0%
AATGTTGAAAGAATGGGGAT+AGG + chr5_1:58937948-58937967 Msa0740120:three_prime_UTR 35.0%
ATAGGAAAAGGCAAAAGAGA+AGG + chr5_1:58937966-58937985 Msa0740120:three_prime_UTR 35.0%
GTTATGTAAATGTCTCCGAT+GGG + chr5_1:58938068-58938087 Msa0740120:three_prime_UTR 35.0%
TTATGTAAATGTCTCCGATG+GGG + chr5_1:58938069-58938088 Msa0740120:three_prime_UTR 35.0%
! GCTCTTCTGCAATATACTTT+TGG + chr5_1:58938129-58938148 Msa0740120:three_prime_UTR 35.0%
!! TCTGCAATATACTTTTGGAG+AGG + chr5_1:58938134-58938153 Msa0740120:three_prime_UTR 35.0%
! TTCAAAAGTATGGATGGACT+TGG - chr5_1:58938162-58938181 None:intergenic 35.0%
!!! GAATTGGGGAAGAAGTGTTT+TGG - chr5_1:58933330-58933349 None:intergenic 40.0%
!! GGTTTTGTGAAGGGTAGAAT+TGG - chr5_1:58933346-58933365 None:intergenic 40.0%
!! GATTTTGGGGGTTTTGTGAA+GGG - chr5_1:58933355-58933374 None:intergenic 40.0%
!! TGATTTTGGGGGTTTTGTGA+AGG - chr5_1:58933356-58933375 None:intergenic 40.0%
GTCATGGCGGTTGTTTATTT+AGG - chr5_1:58933390-58933409 None:intergenic 40.0%
AAATAAACAACCGCCATGAC+CGG + chr5_1:58933390-58933409 Msa0740120:exon 40.0%
TCGATAACGCAAACGGTTAA+CGG + chr5_1:58933477-58933496 Msa0740120:CDS 40.0%
TCGCACAAATTCTTGATCCA+AGG + chr5_1:58933501-58933520 Msa0740120:CDS 40.0%
CGCACAAATTCTTGATCCAA+GGG + chr5_1:58933502-58933521 Msa0740120:CDS 40.0%
ACATACGCAGAATTATCCTC+CGG - chr5_1:58933633-58933652 None:intergenic 40.0%
TTTGATCGCTCTCTTGAAAG+TGG + chr5_1:58933759-58933778 Msa0740120:CDS 40.0%
ATATAAGGGTAGCATGTGGT+AGG + chr5_1:58933797-58933816 Msa0740120:intron 40.0%
TATAAGGGTAGCATGTGGTA+GGG + chr5_1:58933798-58933817 Msa0740120:intron 40.0%
! TTCACCGTCTTTTCTACGAT+AGG - chr5_1:58934051-58934070 None:intergenic 40.0%
CGGTGAAAACTATGTTTAGG+CGG + chr5_1:58934064-58934083 Msa0740120:intron 40.0%
GAGGAAAGTCAAAACACTAG+AGG + chr5_1:58934144-58934163 Msa0740120:intron 40.0%
AAACAATGCCTTCAAGGCAA+TGG + chr5_1:58934586-58934605 Msa0740120:intron 40.0%
ATTCCTTGACCATTTCCTTG+AGG + chr5_1:58934712-58934731 Msa0740120:intron 40.0%
TTCCTTGACCATTTCCTTGA+GGG + chr5_1:58934713-58934732 Msa0740120:intron 40.0%
TTAGTCTATGCAGTTGTGTG+TGG + chr5_1:58934870-58934889 Msa0740120:intron 40.0%
TAGTCTATGCAGTTGTGTGT+GGG + chr5_1:58934871-58934890 Msa0740120:intron 40.0%
GTGATCCAATGTCAGATTCT+GGG - chr5_1:58935324-58935343 None:intergenic 40.0%
TGTGATCCAATGTCAGATTC+TGG - chr5_1:58935325-58935344 None:intergenic 40.0%
TCTGACATTGGATCACACTT+TGG + chr5_1:58935328-58935347 Msa0740120:CDS 40.0%
! ATCACACTTTGGTGCACTAT+TGG + chr5_1:58935339-58935358 Msa0740120:CDS 40.0%
!!! GATGTTACTTTTGATGTGGC+TGG + chr5_1:58935379-58935398 Msa0740120:CDS 40.0%
!!! TGTTACTTTTGATGTGGCTG+GGG + chr5_1:58935381-58935400 Msa0740120:CDS 40.0%
GAAGTTTCCTGGTCATAAGT+TGG + chr5_1:58935405-58935424 Msa0740120:CDS 40.0%
! TCGAAATTCTGGAGATCTAG+CGG - chr5_1:58935437-58935456 None:intergenic 40.0%
GCATGGCCTGTAAAAGTAAA+CGG - chr5_1:58935733-58935752 None:intergenic 40.0%
!! TGTAGCCAACATTTTGACCT+TGG + chr5_1:58935937-58935956 Msa0740120:CDS 40.0%
!! GCAAACAGCTTTTAACTCTG+TGG - chr5_1:58935978-58935997 None:intergenic 40.0%
GTTGTTTGACATACACGAGT+AGG + chr5_1:58936193-58936212 Msa0740120:intron 40.0%
TGACATGGCTAATTCTATGG+AGG + chr5_1:58936355-58936374 Msa0740120:intron 40.0%
GACATGGCTAATTCTATGGA+GGG + chr5_1:58936356-58936375 Msa0740120:intron 40.0%
! ATTTGGAACACATGAAGGCT+AGG - chr5_1:58936997-58937016 None:intergenic 40.0%
! GACACATTTGGAACACATGA+AGG - chr5_1:58937002-58937021 None:intergenic 40.0%
ATATAGTCAACCCTGCTTAG+TGG + chr5_1:58937175-58937194 Msa0740120:intron 40.0%
TATAGTCAACCCTGCTTAGT+GGG + chr5_1:58937176-58937195 Msa0740120:intron 40.0%
! AAACCTTTTCCCACTAAGCA+GGG - chr5_1:58937188-58937207 None:intergenic 40.0%
! AAAACCTTTTCCCACTAAGC+AGG - chr5_1:58937189-58937208 None:intergenic 40.0%
AATAACAAGAGAAGGGAAGG+AGG - chr5_1:58937270-58937289 None:intergenic 40.0%
AAAAACAGATAGAAACCCGC+AGG - chr5_1:58937503-58937522 None:intergenic 40.0%
GAACCATCTTATCAAGCATG+TGG - chr5_1:58937656-58937675 None:intergenic 40.0%
! CCATGGGCATTTTTCTTTCA+TGG - chr5_1:58937728-58937747 None:intergenic 40.0%
CCATGAAAGAAAAATGCCCA+TGG + chr5_1:58937725-58937744 Msa0740120:CDS 40.0%
GGAAAAATCTCAGAGTGTGT+GGG + chr5_1:58937807-58937826 Msa0740120:CDS 40.0%
TGATATCTGTTGTCTCGCAT+TGG + chr5_1:58937883-58937902 Msa0740120:exon 40.0%
GAAAGAATGGGGATAGGAAA+AGG + chr5_1:58937954-58937973 Msa0740120:three_prime_UTR 40.0%
TGAAACATAGAGAAGTTGGC+AGG - chr5_1:58938003-58938022 None:intergenic 40.0%
GGTTATGTAAATGTCTCCGA+TGG + chr5_1:58938067-58938086 Msa0740120:three_prime_UTR 40.0%
CTAAACAACTTACACCCCAT+CGG - chr5_1:58938086-58938105 None:intergenic 40.0%
! GTCCATCCATACTTTTGAAC+TGG + chr5_1:58938163-58938182 Msa0740120:three_prime_UTR 40.0%
! GTCCAGTTCAAAAGTATGGA+TGG - chr5_1:58938168-58938187 None:intergenic 40.0%
TGACGTCCAGTTCAAAAGTA+TGG - chr5_1:58938172-58938191 None:intergenic 40.0%
ATATCAAGGGACAATGCAGT+TGG - chr5_1:58938216-58938235 None:intergenic 40.0%
TGTGTTGAAAGATGGCAGAA+TGG + chr5_1:58938439-58938458 Msa0740120:three_prime_UTR 40.0%
CGATCTACTTCTATCCCGAT+GGG + chr5_1:58933601-58933620 Msa0740120:CDS 45.0%
! TGTTTCGGTTTTCATCGCGT+TGG + chr5_1:58933650-58933669 Msa0740120:CDS 45.0%
CTTGTTGATCAGAGTGGTCA+GGG + chr5_1:58933714-58933733 Msa0740120:CDS 45.0%
TTGTTGATCAGAGTGGTCAG+GGG + chr5_1:58933715-58933734 Msa0740120:CDS 45.0%
GTTTAGGCGGTTTAGTCATG+TGG + chr5_1:58934077-58934096 Msa0740120:intron 45.0%
TCATGTGGAGAGAAGACATG+TGG + chr5_1:58934092-58934111 Msa0740120:intron 45.0%
GACATGTGGATTCTGACCTA+AGG + chr5_1:58934106-58934125 Msa0740120:intron 45.0%
CCATCTGATCTACTCTCCTT+AGG - chr5_1:58934125-58934144 None:intergenic 45.0%
CCTAAGGAGAGTAGATCAGA+TGG + chr5_1:58934122-58934141 Msa0740120:intron 45.0%
AAGGAGAGTAGATCAGATGG+AGG + chr5_1:58934125-58934144 Msa0740120:intron 45.0%
AGTCTATGCAGTTGTGTGTG+GGG + chr5_1:58934872-58934891 Msa0740120:intron 45.0%
AGTTGTGTGTGGGGATAACT+TGG + chr5_1:58934881-58934900 Msa0740120:intron 45.0%
TCCTCTGAGTTGTAACCTTG+TGG + chr5_1:58935083-58935102 Msa0740120:intron 45.0%
TCCACAAGGTTACAACTCAG+AGG - chr5_1:58935087-58935106 None:intergenic 45.0%
GAGTTGTAACCTTGTGGACA+AGG + chr5_1:58935089-58935108 Msa0740120:intron 45.0%
ATGCATTGTCCTTGTCCACA+AGG - chr5_1:58935101-58935120 None:intergenic 45.0%
CAACTGTACAGTTGGAGTTG+TGG + chr5_1:58935258-58935277 Msa0740120:CDS 45.0%
CATGTCCCAGAATCTGACAT+TGG + chr5_1:58935316-58935335 Msa0740120:CDS 45.0%
!! TCCTGGTCATAAGTTGGTGT+TGG + chr5_1:58935411-58935430 Msa0740120:CDS 45.0%
!! TATTTGGGGGAAGTACTGCT+CGG + chr5_1:58935686-58935705 Msa0740120:intron 45.0%
CAGAGATTCCCTTACAGAAG+AGG + chr5_1:58935766-58935785 Msa0740120:CDS 45.0%
AGATTCCCTTACAGAAGAGG+TGG + chr5_1:58935769-58935788 Msa0740120:CDS 45.0%
CATGTCCACCTCTTCTGTAA+GGG - chr5_1:58935777-58935796 None:intergenic 45.0%
TTAGCTGCAGCAGACAAGTA+TGG + chr5_1:58935854-58935873 Msa0740120:CDS 45.0%
TCTCGTCTTTGCAAGGACAT+TGG + chr5_1:58935905-58935924 Msa0740120:CDS 45.0%
GTCAGCCAAGGTCAAAATGT+TGG - chr5_1:58935945-58935964 None:intergenic 45.0%
TTAACTCTGTGGCATGGCAA+TGG - chr5_1:58935967-58935986 None:intergenic 45.0%
!! CAGCTTTTAACTCTGTGGCA+TGG - chr5_1:58935973-58935992 None:intergenic 45.0%
TCTATGGAGGGTTTGACCAT+AGG + chr5_1:58936368-58936387 Msa0740120:intron 45.0%
CATAAACAGTAAACCCCTGG+TGG - chr5_1:58936394-58936413 None:intergenic 45.0%
TCGGTCAAACGCAAACTAGT+AGG + chr5_1:58936425-58936444 Msa0740120:intron 45.0%
TGCTGCCACCTGTTCAAAAA+AGG + chr5_1:58936574-58936593 Msa0740120:intron 45.0%
ATGAGGTCAGACCATTGTAG+AGG + chr5_1:58937477-58937496 Msa0740120:intron 45.0%
AGATCTCTGACTGTAGCCAT+GGG - chr5_1:58937744-58937763 None:intergenic 45.0%
AAGATCTCTGACTGTAGCCA+TGG - chr5_1:58937745-58937764 None:intergenic 45.0%
GAGATCTTGAAGACAGTTGC+TGG + chr5_1:58937757-58937776 Msa0740120:CDS 45.0%
AGGGTGATAGTTGCAGTACA+GGG + chr5_1:58937785-58937804 Msa0740120:CDS 45.0%
GGGAAAAATCTCAGAGTGTG+TGG + chr5_1:58937806-58937825 Msa0740120:CDS 45.0%
GTCACCACCATCTGAAAGTT+GGG - chr5_1:58937833-58937852 None:intergenic 45.0%
TGTCACCACCATCTGAAAGT+TGG - chr5_1:58937834-58937853 None:intergenic 45.0%
! TCAGATGGTGGTGACACAAT+TGG + chr5_1:58937838-58937857 Msa0740120:CDS 45.0%
AGGTAGACTAGATGCTATGC+AGG + chr5_1:58938046-58938065 Msa0740120:three_prime_UTR 45.0%
!! GATGGCAGAATGGATTGTAG+TGG + chr5_1:58938449-58938468 Msa0740120:three_prime_UTR 45.0%
AGATGATGCGTTTCCGGTCA+TGG - chr5_1:58933406-58933425 None:intergenic 50.0%
TGTCGGAGATGATGCGTTTC+CGG - chr5_1:58933412-58933431 None:intergenic 50.0%
GAGATCGTTGGGGAGGATAA+CGG - chr5_1:58933453-58933472 None:intergenic 50.0%
TTATCGAGCGCGAGATCGTT+GGG - chr5_1:58933464-58933483 None:intergenic 50.0%
TACTCGCTCGCAAAGGGAAT+GGG + chr5_1:58933525-58933544 Msa0740120:CDS 50.0%
GCGATCTACTTCTATCCCGA+TGG + chr5_1:58933600-58933619 Msa0740120:CDS 50.0%
CTATCCCGATGGGAAGAATC+CGG + chr5_1:58933611-58933630 Msa0740120:CDS 50.0%
ATCCTCCGGATTCTTCCCAT+CGG - chr5_1:58933619-58933638 None:intergenic 50.0%
! CTCACGCTTGTTGATCAGAG+TGG + chr5_1:58933708-58933727 Msa0740120:CDS 50.0%
! GCTTGTTGATCAGAGTGGTC+AGG + chr5_1:58933713-58933732 Msa0740120:CDS 50.0%
TAGAGAGAGAGGGAGAGAGT+TGG + chr5_1:58934019-58934038 Msa0740120:intron 50.0%
TACTCGCTCGCAAAGGGAAT+GGG - chr5_1:58933525-58933544 None:intergenic 50.0%
!! TAAGGGTACTCGCTCGCAAA+GGG - chr5_1:58934278-58934297 None:intergenic 50.0%
TGCCCTCAAGGAAATGGTCA+AGG - chr5_1:58934718-58934737 None:intergenic 50.0%
AACCAGTGCCCTCAAGGAAA+TGG - chr5_1:58934724-58934743 None:intergenic 50.0%
GCCAACACCAACTTATGACC+AGG - chr5_1:58935415-58935434 None:intergenic 50.0%
! TGGTAGTGTTAAGCACGGCT+AGG + chr5_1:58935587-58935606 Msa0740120:intron 50.0%
!! ATTTGGGGGAAGTACTGCTC+GGG + chr5_1:58935687-58935706 Msa0740120:intron 50.0%
CCATGTCCACCTCTTCTGTA+AGG - chr5_1:58935778-58935797 None:intergenic 50.0%
CCTTACAGAAGAGGTGGACA+TGG + chr5_1:58935775-58935794 Msa0740120:CDS 50.0%
GCTATCAACGTCTCCGAAAC+TGG - chr5_1:58935827-58935846 None:intergenic 50.0%
TGCAGCAGACAAGTATGGCT+TGG + chr5_1:58935859-58935878 Msa0740120:CDS 50.0%
! CAGACAAGTATGGCTTGGAG+AGG + chr5_1:58935864-58935883 Msa0740120:CDS 50.0%
CAACCCTGCTTAGTGGGAAA+AGG + chr5_1:58937182-58937201 Msa0740120:intron 50.0%
AGGGAAGGAGGAGCTTACAT+GGG - chr5_1:58937258-58937277 None:intergenic 50.0%
AAGGGAAGGAGGAGCTTACA+TGG - chr5_1:58937259-58937278 None:intergenic 50.0%
!! GACTTGTTGCAGCTGTCATG+AGG + chr5_1:58937686-58937705 Msa0740120:intron 50.0%
TGTTGCAGCTGTCATGAGGT+CGG + chr5_1:58937690-58937709 Msa0740120:intron 50.0%
! AAGACAGTTGCTGGCTGTGA+GGG + chr5_1:58937766-58937785 Msa0740120:CDS 50.0%
GAGGGTGATAGTTGCAGTAC+AGG + chr5_1:58937784-58937803 Msa0740120:CDS 50.0%
GGGTGATAGTTGCAGTACAG+GGG + chr5_1:58937786-58937805 Msa0740120:CDS 50.0%
! ATGGTGGTGACACAATTGGC+AGG + chr5_1:58937842-58937861 Msa0740120:CDS 50.0%
TGATGCGTTTCCGGTCATGG+CGG - chr5_1:58933403-58933422 None:intergenic 55.0%
TATCGAGCGCGAGATCGTTG+GGG - chr5_1:58933463-58933482 None:intergenic 55.0%
GTTATCGAGCGCGAGATCGT+TGG - chr5_1:58933465-58933484 None:intergenic 55.0%
CTCGCGCTCGATAACGCAAA+CGG + chr5_1:58933470-58933489 Msa0740120:CDS 55.0%
!! CAAGGGTACTCGCTCGCAAA+GGG + chr5_1:58933519-58933538 Msa0740120:CDS 55.0%
GTACTCGCTCGCAAAGGGAA+TGG + chr5_1:58933524-58933543 Msa0740120:CDS 55.0%
CTCGCAAAGGGAATGGGAGT+TGG + chr5_1:58933531-58933550 Msa0740120:CDS 55.0%
! GCGAGCGATGTTTTCACCGT+CGG + chr5_1:58933564-58933583 Msa0740120:CDS 55.0%
! AGCGATGTTTTCACCGTCGG+AGG + chr5_1:58933567-58933586 Msa0740120:CDS 55.0%
! GCGATGTTTTCACCGTCGGA+GGG + chr5_1:58933568-58933587 Msa0740120:CDS 55.0%
TCCTCCGGATTCTTCCCATC+GGG - chr5_1:58933618-58933637 None:intergenic 55.0%
! TTCATCGCGTTGGCGAGTGA+AGG + chr5_1:58933660-58933679 Msa0740120:CDS 55.0%
! GAGTGGTCAGGGGAAGCATA+AGG + chr5_1:58933725-58933744 Msa0740120:CDS 55.0%
ACTCGCTCGCAAAGGGAATG+GGG - chr5_1:58933526-58933545 None:intergenic 55.0%
GTACTCGCTCGCAAAGGGAA+TGG - chr5_1:58933524-58933543 None:intergenic 55.0%
!! CTAAGGGTACTCGCTCGCAA+AGG - chr5_1:58934279-58934298 None:intergenic 55.0%
! GACCATTTCCTTGAGGGCAC+TGG + chr5_1:58934719-58934738 Msa0740120:intron 55.0%
CTTGCTAACCAGTGCCCTCA+AGG - chr5_1:58934730-58934749 None:intergenic 55.0%
TGGCACGGATATGGACACAC+AGG + chr5_1:58935471-58935490 Msa0740120:CDS 55.0%
GTGCGAGTCTCGTCTTTGCA+AGG + chr5_1:58935898-58935917 Msa0740120:CDS 55.0%
GGTTTGACCATAGGCCACCA+GGG + chr5_1:58936377-58936396 Msa0740120:intron 55.0%
GTTTGACCATAGGCCACCAG+GGG + chr5_1:58936378-58936397 Msa0740120:intron 55.0%
AGTAAACCCCTGGTGGCCTA+TGG - chr5_1:58936387-58936406 None:intergenic 55.0%
CAGACCATTGTAGAGGCCTG+CGG + chr5_1:58937484-58937503 Msa0740120:intron 55.0%
AGACCATTGTAGAGGCCTGC+GGG + chr5_1:58937485-58937504 Msa0740120:intron 55.0%
AAACCCGCAGGCCTCTACAA+TGG - chr5_1:58937491-58937510 None:intergenic 55.0%
! GAAGACAGTTGCTGGCTGTG+AGG + chr5_1:58937765-58937784 Msa0740120:CDS 55.0%
GTGTGGGCCCAACTTTCAGA+TGG + chr5_1:58937823-58937842 Msa0740120:CDS 55.0%
TGGGCCCAACTTTCAGATGG+TGG + chr5_1:58937826-58937845 Msa0740120:CDS 55.0%
TCCGACACCATCACCGTCAC+CGG + chr5_1:58933425-58933444 Msa0740120:CDS 60.0%
CCTTTGCGAGCGAGTACCCT+TGG - chr5_1:58934276-58934295 None:intergenic 60.0%
!! CCAAGGGTACTCGCTCGCAA+AGG + chr5_1:58933518-58933537 Msa0740120:CDS 60.0%
!! TCACCGTCGGAGGGTATCAG+TGG + chr5_1:58933577-58933596 Msa0740120:CDS 60.0%
!! CACCGTCGGAGGGTATCAGT+GGG + chr5_1:58933578-58933597 Msa0740120:CDS 60.0%
TCCCGATGGGAAGAATCCGG+AGG + chr5_1:58933614-58933633 Msa0740120:CDS 60.0%
! CGCGTTGGCGAGTGAAGGAA+CGG + chr5_1:58933665-58933684 Msa0740120:CDS 60.0%
CTCGCAAAGGGAATGGGGGT+CGG - chr5_1:58934266-58934285 None:intergenic 60.0%
CTCGCTCGCAAAGGGAATGG+GGG - chr5_1:58933527-58933546 None:intergenic 60.0%
GTGGCTGGGGAGAAGTTTCC+TGG + chr5_1:58935394-58935413 Msa0740120:CDS 60.0%
GGCATGGCAATGGTCAGCCA+AGG - chr5_1:58935957-58935976 None:intergenic 60.0%
GGGTTTGACCATAGGCCACC+AGG + chr5_1:58936376-58936395 Msa0740120:intron 60.0%
GCAGCTGTCATGAGGTCGGA+TGG + chr5_1:58937694-58937713 Msa0740120:intron 60.0%
! GCCGGTGACGGTGATGGTGT+CGG - chr5_1:58933429-58933448 None:intergenic 65.0%
!! GAGGATAACGGCGCCGGTGA+CGG - chr5_1:58933441-58933460 None:intergenic 65.0%
! GTTGGGGAGGATAACGGCGC+CGG - chr5_1:58933447-58933466 None:intergenic 65.0%
CGCCCACTGATACCCTCCGA+CGG - chr5_1:58933583-58933602 None:intergenic 65.0%
GGGAATGGGGGTCGGCTACA+TGG - chr5_1:58934258-58934277 None:intergenic 65.0%
!! TGGGGGAAGTACTGCTCGGG+AGG + chr5_1:58935690-58935709 Msa0740120:intron 65.0%
!! AACGGCGCCGGTGACGGTGA+TGG - chr5_1:58933435-58933454 None:intergenic 70.0%
CGAGCGCGAGATCGTTGGGG+AGG - chr5_1:58933460-58933479 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 58933327 58938493 58933327 ID=Msa0740120;Name=Msa0740120
chr5_1 mRNA 58933327 58938493 58933327 ID=Msa0740120-mRNA-1;Parent=Msa0740120;Name=Msa0740120-mRNA-1;_AED=0.09;_eAED=0.09;_QI=78|1|1|1|1|1|4|608|407
chr5_1 exon 58933327 58933814 58933327 ID=Msa0740120-mRNA-1:exon:16855;Parent=Msa0740120-mRNA-1
chr5_1 exon 58935186 58935531 58935186 ID=Msa0740120-mRNA-1:exon:16856;Parent=Msa0740120-mRNA-1
chr5_1 exon 58935746 58936025 58935746 ID=Msa0740120-mRNA-1:exon:16857;Parent=Msa0740120-mRNA-1
chr5_1 exon 58937698 58938493 58937698 ID=Msa0740120-mRNA-1:exon:16858;Parent=Msa0740120-mRNA-1
chr5_1 five_prime_UTR 58933327 58933404 58933327 ID=Msa0740120-mRNA-1:five_prime_utr;Parent=Msa0740120-mRNA-1
chr5_1 CDS 58933405 58933814 58933405 ID=Msa0740120-mRNA-1:cds;Parent=Msa0740120-mRNA-1
chr5_1 CDS 58935186 58935531 58935186 ID=Msa0740120-mRNA-1:cds;Parent=Msa0740120-mRNA-1
chr5_1 CDS 58935746 58936025 58935746 ID=Msa0740120-mRNA-1:cds;Parent=Msa0740120-mRNA-1
chr5_1 CDS 58937698 58937885 58937698 ID=Msa0740120-mRNA-1:cds;Parent=Msa0740120-mRNA-1
chr5_1 three_prime_UTR 58937886 58938493 58937886 ID=Msa0740120-mRNA-1:three_prime_utr;Parent=Msa0740120-mRNA-1
Gene Sequence

>Msa0740120

ATGACCGGAAACGCATCATCTCCGACACCATCACCGTCACCGGCGCCGTTATCCTCCCCAACGATCTCGCGCTCGATAACGCAAACGGTTAACGGTTCGCACAAATTCTTGATCCAAGGGTACTCGCTCGCAAAGGGAATGGGAGTTGGAAAACACATTGCGAGCGATGTTTTCACCGTCGGAGGGTATCAGTGGGCGATCTACTTCTATCCCGATGGGAAGAATCCGGAGGATAATTCTGCGTATGTTTCGGTTTTCATCGCGTTGGCGAGTGAAGGAACGGATGTGAGAGCGCTTTTTGAACTCACGCTTGTTGATCAGAGTGGTCAGGGGAAGCATAAGGTTCATAGCCATTTTGATCGCTCTCTTGAAAGTGGTCCTTATACCTTGAAATATAAGGGTAGCATGTGGGGTTACAAGCGTTTTTTCAGACGGACTTTGCTTGAAAGCTCTGATTTCCTCAAGAATGATTGCTTGAAAATCAACTGTACAGTTGGAGTTGTGGTTTCTGCTGTTGATTGCCCACAGCTTAACTCTATTCATGTCCCAGAATCTGACATTGGATCACACTTTGGTGCACTATTGGAGAATAATGAAGGTTCAGATGTTACTTTTGATGTGGCTGGGGAGAAGTTTCCTGGTCATAAGTTGGTGTTGGCCGCTAGATCTCCAGAATTTCGATCTAAATTTTTTGATGGCACGGATATGGACACACAGGAGATTGTTGTGACAGATTTAGAACCAAAGGTTTTTAAGGCCATGCTGCATTTTATCTACAGAGATTCCCTTACAGAAGAGGTGGACATGGTTTCATCAACAACATCTAGTGATTTTCCAGTTTCGGAGACGTTGATAGCAAAATTGTTAGCTGCAGCAGACAAGTATGGCTTGGAGAGGCTTAGACTGATGTGCGAGTCTCGTCTTTGCAAGGACATTGGTGTGAGTTCTGTAGCCAACATTTTGACCTTGGCTGACCATTGCCATGCCACAGAGTTAAAAGCTGTTTGCCTAAAATTTGCTTCTCAAAATCTAGCCGCTGTCATGAGGTCGGATGGATTCGAGTCCATGAAAGAAAAATGCCCATGGCTACAGTCAGAGATCTTGAAGACAGTTGCTGGCTGTGAGGGTGATAGTTGCAGTACAGGGGAAAAATCTCAGAGTGTGTGGGCCCAACTTTCAGATGGTGGTGACACAATTGGCAGGAGAGTCAGACAGAGACATTGA
Protein sequence

>Msa0740120

MTGNASSPTPSPSPAPLSSPTISRSITQTVNGSHKFLIQGYSLAKGMGVGKHIASDVFTVGGYQWAIYFYPDGKNPEDNSAYVSVFIALASEGTDVRALFELTLVDQSGQGKHKVHSHFDRSLESGPYTLKYKGSMWGYKRFFRRTLLESSDFLKNDCLKINCTVGVVVSAVDCPQLNSIHVPESDIGSHFGALLENNEGSDVTFDVAGEKFPGHKLVLAARSPEFRSKFFDGTDMDTQEIVVTDLEPKVFKAMLHFIYRDSLTEEVDMVSSTTSSDFPVSETLIAKLLAAADKYGLERLRLMCESRLCKDIGVSSVANILTLADHCHATELKAVCLKFASQNLAAVMRSDGFESMKEKCPWLQSEILKTVAGCEGDSCSTGEKSQSVWAQLSDGGDTIGRRVRQRH*