Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0746040 | XP_003610532.1 | 98.358 | 548 | 9 | 0 | 1 | 548 | 1 | 548 | 0.0 | 1080 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0746040 | sp|Q8LG88|TDT_ARATH | 63.853 | 545 | 179 | 5 | 1 | 534 | 1 | 538 | 0.0 | 698 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0746040 | G7JLM6 | 98.358 | 548 | 9 | 0 | 1 | 548 | 1 | 548 | 0.0 | 1080 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0746040 | Msa1223950 | 0.946472 | 4.326934e-105 | -8.615850e-47 |
Msa0746040 | Msa1263200 | 0.954259 | 4.422025e-112 | -8.615850e-47 |
Msa0746040 | Msa1302530 | 0.931984 | 1.678588e-94 | -8.615850e-47 |
Msa0746040 | Msa1361520 | -0.800007 | 1.763632e-48 | -8.615850e-47 |
Msa0419310 | Msa0746040 | -0.815311 | 9.867194e-52 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0746040 | MtrunA17_Chr4g0075801 | 98.358 | 548 | 9 | 0 | 1 | 548 | 1 | 548 | 0.0 | 1080 |
Msa0746040 | MtrunA17_Chr2g0290091 | 78.435 | 524 | 106 | 4 | 19 | 536 | 6 | 528 | 0.0 | 835 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0746040 | AT5G47560.1 | 63.853 | 545 | 179 | 5 | 1 | 534 | 1 | 538 | 0.0 | 698 |
Find 146 sgRNAs with CRISPR-Local
Find 352 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
AACCATGTGTTGAAACTTAT+TGG | 0.130022 | 5_1:+68044901 | None:intergenic |
CTGTTTCTGTTCCCTCTCTT+TGG | 0.149243 | 5_1:-68046018 | Msa0746040:CDS |
AACAATTTCTATGTTCTTCT+TGG | 0.178098 | 5_1:-68046186 | Msa0746040:CDS |
CTTAGAAGATGCTCCATATT+TGG | 0.182122 | 5_1:-68042737 | Msa0746040:CDS |
CGATGTCATTACCCTTGTTT+TGG | 0.238022 | 5_1:-68045956 | Msa0746040:CDS |
GAAATTGTTGAAGGTGAAAA+AGG | 0.247635 | 5_1:+68046200 | None:intergenic |
TGTATTGGGTATCCACATTT+TGG | 0.259681 | 5_1:+68041570 | None:intergenic |
ACTGTGTTCTCCTGTCATTT+TGG | 0.263152 | 5_1:+68046320 | None:intergenic |
CAGCTCCAAGTAACAAAATT+AGG | 0.271062 | 5_1:+68042827 | None:intergenic |
AAGTGTCCTTTACTCAAATA+AGG | 0.271792 | 5_1:+68044781 | None:intergenic |
GTGGTAGAAGTGGGGCCTTC+AGG | 0.287054 | 5_1:+68046259 | None:intergenic |
GAATCCAGCGCTATTGTTAT+TGG | 0.299822 | 5_1:-68045184 | Msa0746040:CDS |
AAGGATTGCTTTGTGTTCTA+TGG | 0.303994 | 5_1:+68046235 | None:intergenic |
GGTCTGCCACTTAAGGTTGC+TGG | 0.310572 | 5_1:-68042466 | Msa0746040:CDS |
GCAGGAGCAATTGCCAAATA+TGG | 0.317007 | 5_1:+68042724 | None:intergenic |
GGTGTAAATTTGATATTGAT+TGG | 0.317954 | 5_1:-68044955 | Msa0746040:CDS |
TGCAGTTGCTGATCATATTA+TGG | 0.334276 | 5_1:-68043193 | Msa0746040:intron |
AATCCAGCGCTATTGTTATT+GGG | 0.344059 | 5_1:-68045183 | Msa0746040:CDS |
CAAAGTTGGTCTGCCACTTA+AGG | 0.364039 | 5_1:-68042473 | Msa0746040:CDS |
CATGCTTGCTGTTATTGCTT+GGG | 0.364876 | 5_1:-68046097 | Msa0746040:CDS |
ACTCTTCCTTCAATAACTAT+AGG | 0.381828 | 5_1:+68041272 | None:intergenic |
AGGATCACAGATGACATTCC+CGG | 0.395895 | 5_1:-68043161 | Msa0746040:CDS |
CATGTTACGGCTATTGTTGT+TGG | 0.404683 | 5_1:+68046116 | None:intergenic |
GTCTGCCACTTAAGGTTGCT+GGG | 0.407479 | 5_1:-68042465 | Msa0746040:CDS |
ATGTTGATGCCGGTGGCCAC+AGG | 0.409144 | 5_1:-68045102 | Msa0746040:CDS |
TAACAAAGAGACAGATGAAA+AGG | 0.414164 | 5_1:+68046151 | None:intergenic |
AGAGGACACATAGAAGTAAC+AGG | 0.416408 | 5_1:+68046039 | None:intergenic |
GAGAAGAAGAATGATTGTTA+AGG | 0.419127 | 5_1:+68046381 | None:intergenic |
GTGGTTTATGCCGTGCCAAT+TGG | 0.419394 | 5_1:-68045003 | Msa0746040:CDS |
GCCACCACCGTCGGAGCAAT+CGG | 0.421873 | 5_1:-68045064 | Msa0746040:CDS |
CATGTCTTTCGCAGAGAAAA+TGG | 0.422210 | 5_1:-68043344 | Msa0746040:CDS |
ACATGCTTGCTGTTATTGCT+TGG | 0.432445 | 5_1:-68046098 | Msa0746040:CDS |
CATTTATGATTGAAAATTTG+AGG | 0.439221 | 5_1:-68041617 | Msa0746040:three_prime_UTR |
CTTCAGGTTGAGGTTGATGT+TGG | 0.451414 | 5_1:+68046275 | None:intergenic |
CTCTCTCCTTATTTGAGTAA+AGG | 0.456416 | 5_1:-68044787 | Msa0746040:CDS |
ATGTTACGGCTATTGTTGTT+GGG | 0.457105 | 5_1:+68046117 | None:intergenic |
TTCCATGGCCTTGTTGGTGA+TGG | 0.468327 | 5_1:-68043125 | Msa0746040:CDS |
ATGTGGAAGAGTCTTGTTCC+TGG | 0.468609 | 5_1:-68044931 | Msa0746040:CDS |
GAAGTGGGGCCTTCAGGTTG+AGG | 0.470925 | 5_1:+68046265 | None:intergenic |
GTTTATGCCGTGCCAATTGG+AGG | 0.471732 | 5_1:-68045000 | Msa0746040:CDS |
ATATTACTAGGCAAAGGAGG+AGG | 0.478334 | 5_1:-68041391 | Msa0746040:three_prime_UTR |
TACCGTTGCTCATTCTTACA+TGG | 0.479194 | 5_1:-68045980 | Msa0746040:CDS |
ACAAGAGGGTGAGAAGCTAA+TGG | 0.479870 | 5_1:-68042881 | Msa0746040:CDS |
CTGCTTGATTTACCTAAGGA+AGG | 0.481460 | 5_1:-68044824 | Msa0746040:CDS |
GCAAATAATTTACCTAGAGA+TGG | 0.484625 | 5_1:+68042418 | None:intergenic |
AAAGTACTCATCCCTCCAAT+TGG | 0.484679 | 5_1:+68044988 | None:intergenic |
TCCGATTGCTCCGACGGTGG+TGG | 0.485794 | 5_1:+68045063 | None:intergenic |
AATTCAGTAGCAATTGCTCC+TGG | 0.490731 | 5_1:+68042574 | None:intergenic |
GCAAAAGCAACTACATTTGA+GGG | 0.492457 | 5_1:+68042526 | None:intergenic |
CAATAACAGCAAGCATGTTA+CGG | 0.494684 | 5_1:+68046103 | None:intergenic |
TTCTCTGCTTGATTTACCTA+AGG | 0.497551 | 5_1:-68044828 | Msa0746040:CDS |
AACTCCGATTGCTCCGACGG+TGG | 0.499273 | 5_1:+68045060 | None:intergenic |
AGCAAAAGCAACTACATTTG+AGG | 0.499523 | 5_1:+68042525 | None:intergenic |
ACAAACCGTAAAACATAGAA+AGG | 0.503797 | 5_1:+68041197 | None:intergenic |
GAGGTTGATGTTGGATTCAT+CGG | 0.508040 | 5_1:+68046284 | None:intergenic |
AAGAACATAGAAATTGTTGA+AGG | 0.509546 | 5_1:+68046191 | None:intergenic |
TATTACTAGGCAAAGGAGGA+GGG | 0.510489 | 5_1:-68041390 | Msa0746040:three_prime_UTR |
CACATAGAAGTAACAGGAAG+TGG | 0.512441 | 5_1:+68046045 | None:intergenic |
ATTCAAGATACGCTCAAAGT+TGG | 0.514187 | 5_1:-68042487 | Msa0746040:CDS |
CTACAACGTTCACAGAAGAT+TGG | 0.516743 | 5_1:-68045902 | Msa0746040:CDS |
ACCAACTCCGATTGCTCCGA+CGG | 0.521741 | 5_1:+68045057 | None:intergenic |
TGTAACAGCCCTGTGGCCAC+CGG | 0.524138 | 5_1:+68045093 | None:intergenic |
GGAGGGATGAGTACTTTGAC+AGG | 0.524697 | 5_1:-68044982 | Msa0746040:CDS |
GCTATCCCAGCAACCTTAAG+TGG | 0.526924 | 5_1:+68042460 | None:intergenic |
CCTCTTCTTCTTATGATCCC+AGG | 0.527608 | 5_1:-68042592 | Msa0746040:CDS |
AACAATAGCGCTGGATTCAA+CGG | 0.528207 | 5_1:+68045189 | None:intergenic |
AGTAACAAAATTAGGTTCCA+AGG | 0.528587 | 5_1:+68042835 | None:intergenic |
CACAGATGACATTCCCGGAT+GGG | 0.530635 | 5_1:-68043156 | Msa0746040:CDS |
CCCTAGCTGAGCCCTTCCTT+AGG | 0.531630 | 5_1:+68044812 | None:intergenic |
ATGAGTACTTTGACAGGGAC+AGG | 0.531696 | 5_1:-68044976 | Msa0746040:CDS |
TTCTATGGAGTGGTAGAAGT+GGG | 0.531994 | 5_1:+68046250 | None:intergenic |
ACCTAAGGAAGGGCTCAGCT+AGG | 0.534237 | 5_1:-68044813 | Msa0746040:CDS |
TTCCATCACCAACAAGGCCA+TGG | 0.535039 | 5_1:+68043123 | None:intergenic |
TTACTAGGCAAAGGAGGAGG+GGG | 0.535083 | 5_1:-68041388 | Msa0746040:three_prime_UTR |
AGCTGCCGTGATGTTGATGC+CGG | 0.539745 | 5_1:-68045112 | Msa0746040:CDS |
TCATATTATGGATGACAAGA+AGG | 0.542160 | 5_1:-68043181 | Msa0746040:CDS |
TGGCCACAGGGCTGTTACAG+CGG | 0.542397 | 5_1:-68045089 | Msa0746040:CDS |
AGGGTGAGAAGCTAATGGAT+TGG | 0.543793 | 5_1:-68042876 | Msa0746040:CDS |
GTATATATGTAGATATTACT+AGG | 0.544182 | 5_1:-68041403 | Msa0746040:three_prime_UTR |
CAGTAGAGCGGTGGTTCTAA+CGG | 0.547575 | 5_1:-68045025 | Msa0746040:CDS |
GAATGAAACTTCCCAAAACA+AGG | 0.552593 | 5_1:+68045944 | None:intergenic |
TTGGAACAAATGGTGTCCAA+TGG | 0.555718 | 5_1:-68041722 | Msa0746040:CDS |
AACAAAGAGACAGATGAAAA+GGG | 0.558930 | 5_1:+68046152 | None:intergenic |
ATGAATGCAAGAAATTACCT+TGG | 0.560679 | 5_1:-68042852 | Msa0746040:CDS |
TGTTGATGCCGGTGGCCACA+GGG | 0.561507 | 5_1:-68045101 | Msa0746040:CDS |
AGACCCAATAACAATAGCGC+TGG | 0.562343 | 5_1:+68045180 | None:intergenic |
ATTACTAGGCAAAGGAGGAG+GGG | 0.565907 | 5_1:-68041389 | Msa0746040:three_prime_UTR |
TGCTTGATTTACCTAAGGAA+GGG | 0.566581 | 5_1:-68044823 | Msa0746040:CDS |
ATTTGATATTGATTGGAATG+TGG | 0.568501 | 5_1:-68044948 | Msa0746040:CDS |
CAAAAGCAACTACATTTGAG+GGG | 0.572652 | 5_1:+68042527 | None:intergenic |
CAGATGAAAAGGGACAATAA+AGG | 0.573040 | 5_1:+68046162 | None:intergenic |
AAGAGGGAATTAGAAGCTCT+AGG | 0.573141 | 5_1:-68044757 | Msa0746040:intron |
CGTCATTCTTTGTGAGCATG+TGG | 0.577614 | 5_1:-68045149 | Msa0746040:CDS |
GTGAACGTTGTAGCGTTCAA+CGG | 0.578386 | 5_1:+68045912 | None:intergenic |
GCTGATGGAGTTCAATCTAG+TGG | 0.579028 | 5_1:-68042793 | Msa0746040:CDS |
ACAGATGACATTCCCGGATG+GGG | 0.580025 | 5_1:-68043155 | Msa0746040:CDS |
AGGTGACATCAGTGTTCTGT+GGG | 0.581688 | 5_1:-68045215 | Msa0746040:CDS |
CCTAAGGAAGGGCTCAGCTA+GGG | 0.582022 | 5_1:-68044812 | Msa0746040:CDS |
AATATTAAAACTTACGGTCA+AGG | 0.583731 | 5_1:+68045879 | None:intergenic |
CAGAAGCAATTCCAAAGAGA+GGG | 0.586284 | 5_1:+68046007 | None:intergenic |
CACTTCTATATCATATAGCT+AGG | 0.587296 | 5_1:-68042630 | Msa0746040:CDS |
TTTGATAATATAGGTTATGG+TGG | 0.589723 | 5_1:-68042935 | Msa0746040:intron |
CCTGGGATCATAAGAAGAAG+AGG | 0.590839 | 5_1:+68042592 | None:intergenic |
AACAGGAAGTGGTAAAGCAG+AGG | 0.593621 | 5_1:+68046056 | None:intergenic |
AACCAATAAGTTTCAACACA+TGG | 0.595683 | 5_1:-68044903 | Msa0746040:CDS |
CTAGCTATATGATATAGAAG+TGG | 0.598049 | 5_1:+68042631 | None:intergenic |
ACCGTCGGAGCAATCGGAGT+TGG | 0.598580 | 5_1:-68045058 | Msa0746040:CDS |
AATACCAAACAGAAAACAAG+AGG | 0.598893 | 5_1:-68042896 | Msa0746040:CDS |
GCAGAAGCAATTCCAAAGAG+AGG | 0.598997 | 5_1:+68046006 | None:intergenic |
ACAGCGGCTGCCACCACCGT+CGG | 0.600123 | 5_1:-68045073 | Msa0746040:CDS |
ATTCAGTAGCAATTGCTCCT+GGG | 0.601962 | 5_1:+68042575 | None:intergenic |
TAGCTATATGATATAGAAGT+GGG | 0.604968 | 5_1:+68042632 | None:intergenic |
GAGTAAAGGACACTTGAAGA+GGG | 0.605380 | 5_1:-68044773 | Msa0746040:CDS |
TGAGTAAAGGACACTTGAAG+AGG | 0.607837 | 5_1:-68044774 | Msa0746040:CDS |
TGCCGTGATGTTGATGCCGG+TGG | 0.610921 | 5_1:-68045109 | Msa0746040:CDS |
TTGCTTTGTGTTCTATGGAG+TGG | 0.611142 | 5_1:+68046240 | None:intergenic |
AAGGTGACATCAGTGTTCTG+TGG | 0.613487 | 5_1:-68045216 | Msa0746040:CDS |
CAACATCAACCTCAACCTGA+AGG | 0.615326 | 5_1:-68046274 | Msa0746040:CDS |
TGGGATAATAAGTGTAGCAG+TGG | 0.618230 | 5_1:+68042651 | None:intergenic |
TAGATATTACTAGGCAAAGG+AGG | 0.621362 | 5_1:-68041394 | Msa0746040:three_prime_UTR |
ATGTAGATATTACTAGGCAA+AGG | 0.622181 | 5_1:-68041397 | Msa0746040:three_prime_UTR |
TCACAGATGACATTCCCGGA+TGG | 0.624095 | 5_1:-68043157 | Msa0746040:CDS |
CTACTTATAAGACTAACTGC+AGG | 0.624428 | 5_1:+68042706 | None:intergenic |
AAGAGAGGGAACAGAAACAG+AGG | 0.638570 | 5_1:+68046021 | None:intergenic |
AGAAATCAATTTGTCAACCA+CGG | 0.638750 | 5_1:+68041681 | None:intergenic |
TTTATGCCGTGCCAATTGGA+GGG | 0.639992 | 5_1:-68044999 | Msa0746040:CDS |
CAGCCGCTGTAACAGCCCTG+TGG | 0.640090 | 5_1:+68045086 | None:intergenic |
TGATTGTTAAGGTTGAGTGT+TGG | 0.642833 | 5_1:+68046392 | None:intergenic |
GTTCTATGGAGTGGTAGAAG+TGG | 0.645537 | 5_1:+68046249 | None:intergenic |
ACTCATCCCTCCAATTGGCA+CGG | 0.646058 | 5_1:+68044993 | None:intergenic |
GGCCACCGGCATCAACATCA+CGG | 0.647085 | 5_1:+68045107 | None:intergenic |
TAGAGCGGTGGTTCTAACGG+TGG | 0.651368 | 5_1:-68045022 | Msa0746040:CDS |
AAAAGCAACTACATTTGAGG+GGG | 0.652988 | 5_1:+68042528 | None:intergenic |
GAATAAGTTCAGTAGAGCGG+TGG | 0.658888 | 5_1:-68045034 | Msa0746040:CDS |
TCTATGGAGTGGTAGAAGTG+GGG | 0.659872 | 5_1:+68046251 | None:intergenic |
TGACACTTCCATCACCAACA+AGG | 0.662968 | 5_1:+68043117 | None:intergenic |
CCGTAAAACATAGAAAGGCA+CGG | 0.672086 | 5_1:+68041202 | None:intergenic |
AATGAAACTTCCCAAAACAA+GGG | 0.680887 | 5_1:+68045945 | None:intergenic |
GAGGGATGAGTACTTTGACA+GGG | 0.684482 | 5_1:-68044981 | Msa0746040:CDS |
GTCCATGTAAGAATGAGCAA+CGG | 0.693112 | 5_1:+68045978 | None:intergenic |
CATGCTCACAAAGAATGACG+TGG | 0.694517 | 5_1:+68045152 | None:intergenic |
GGTGAATAAGTTCAGTAGAG+CGG | 0.695026 | 5_1:-68045037 | Msa0746040:CDS |
TGCCAAACAAAATCTCTCCG+TGG | 0.711262 | 5_1:-68041698 | Msa0746040:CDS |
ATACCAAACAGAAAACAAGA+GGG | 0.731604 | 5_1:-68042895 | Msa0746040:CDS |
GAGCATGTGGATGCACAACG+TGG | 0.798016 | 5_1:-68045136 | Msa0746040:CDS |
GGTGACATCAGTGTTCTGTG+GGG | 0.814024 | 5_1:-68045214 | Msa0746040:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | TAAACTAATATTAAAACTTA+CGG | + | chr5_1:68041676-68041695 | None:intergenic | 10.0% |
!!! | TTTATCTTTATATGATTTTT+AGG | - | chr5_1:68042914-68042933 | Msa0746040:CDS | 10.0% |
!!! | TCATTCATATATAATTTTCT+TGG | + | chr5_1:68042093-68042112 | None:intergenic | 15.0% |
!!! | TATATTTTTGAATGATTAGA+AGG | - | chr5_1:68042184-68042203 | Msa0746040:intron | 15.0% |
!! | TGATAAAAAAATATAGTCAA+TGG | + | chr5_1:68043305-68043324 | None:intergenic | 15.0% |
!! | ATTAAAATTTAACTATGCTT+AGG | + | chr5_1:68043416-68043435 | None:intergenic | 15.0% |
!!! | AAGAGTAAATTTTAGAATAT+TGG | + | chr5_1:68043506-68043525 | None:intergenic | 15.0% |
!!! | GTTTTTTTGACAAAAAAAAT+TGG | + | chr5_1:68043818-68043837 | None:intergenic | 15.0% |
!!! | TAAGAAAAGTGTATAAATAA+AGG | - | chr5_1:68043943-68043962 | Msa0746040:intron | 15.0% |
!!! | AAGAAAAGTGTATAAATAAA+GGG | - | chr5_1:68043944-68043963 | Msa0746040:intron | 15.0% |
!! | TATTTAGTGTTATATTGTAT+TGG | - | chr5_1:68044008-68044027 | Msa0746040:intron | 15.0% |
!! | ATTTAGTGTTATATTGTATT+GGG | - | chr5_1:68044009-68044028 | Msa0746040:intron | 15.0% |
!!! | TTTATTGATAATTCTGTAAT+TGG | - | chr5_1:68044165-68044184 | Msa0746040:intron | 15.0% |
!!! | TTTGTCATTTTTGATAATAT+AGG | - | chr5_1:68044602-68044621 | Msa0746040:intron | 15.0% |
!!! | ATTTTTGATAATATAGGTTA+TGG | - | chr5_1:68044608-68044627 | Msa0746040:intron | 15.0% |
!!! | TTGATATTTCTAATTAAACT+AGG | + | chr5_1:68045325-68045344 | None:intergenic | 15.0% |
!!! | ATTTTACTTGAATTTGAATT+TGG | - | chr5_1:68045392-68045411 | Msa0746040:intron | 15.0% |
!!! | TTTTACTTGAATTTGAATTT+GGG | - | chr5_1:68045393-68045412 | Msa0746040:intron | 15.0% |
!! | CAAAAATCAATATTATTACA+AGG | + | chr5_1:68046380-68046399 | None:intergenic | 15.0% |
!! | TCAATAAATAAAATTTCGAC+AGG | + | chr5_1:68041793-68041812 | None:intergenic | 20.0% |
!! | TTTATTGATATGAAATCGTT+TGG | - | chr5_1:68041805-68041824 | Msa0746040:intron | 20.0% |
!! | TGAATACTTGATTAAAAGTT+TGG | + | chr5_1:68041853-68041872 | None:intergenic | 20.0% |
!!! | TTGTTTTTCTTATATGCTTT+TGG | - | chr5_1:68042691-68042710 | Msa0746040:CDS | 20.0% |
!!! | AATTTAAAATGGGAACAAAT+GGG | + | chr5_1:68043230-68043249 | None:intergenic | 20.0% |
!!! | AAATTTAAAATGGGAACAAA+TGG | + | chr5_1:68043231-68043250 | None:intergenic | 20.0% |
!!! | CATTTTATATAGACACTAAT+GGG | + | chr5_1:68043353-68043372 | None:intergenic | 20.0% |
!!! | ACATTTTATATAGACACTAA+TGG | + | chr5_1:68043354-68043373 | None:intergenic | 20.0% |
!! | CTAAAAACATGACTAATATA+TGG | - | chr5_1:68043450-68043469 | Msa0746040:intron | 20.0% |
!!! | AGAAAAGTGTATAAATAAAG+GGG | - | chr5_1:68043945-68043964 | Msa0746040:intron | 20.0% |
!! | TAAGTGGAATATATTGTATT+GGG | - | chr5_1:68043968-68043987 | Msa0746040:intron | 20.0% |
!! | AGTTGTATTGAAAATTGAAA+TGG | - | chr5_1:68044041-68044060 | Msa0746040:intron | 20.0% |
!! | GTTGTATTGAAAATTGAAAT+GGG | - | chr5_1:68044042-68044061 | Msa0746040:intron | 20.0% |
!!! | GACACTTTTTTTTAGAAAAT+GGG | - | chr5_1:68044078-68044097 | Msa0746040:intron | 20.0% |
!!! | CAATGCAAAATTTCTTTTTT+TGG | + | chr5_1:68045544-68045563 | None:intergenic | 20.0% |
!!! | CAAAAAAAGAAATTTTGCAT+TGG | - | chr5_1:68045542-68045561 | Msa0746040:intron | 20.0% |
!! | AAAAATTTGACTCAAAAGTA+TGG | + | chr5_1:68045717-68045736 | None:intergenic | 20.0% |
!! | CATTTATGATTGAAAATTTG+AGG | - | chr5_1:68045929-68045948 | Msa0746040:CDS | 20.0% |
!! | GTATATATGTAGATATTACT+AGG | - | chr5_1:68046143-68046162 | Msa0746040:CDS | 20.0% |
! | TTGGATAGAAAAAAGGAATT+GGG | + | chr5_1:68041210-68041229 | None:intergenic | 25.0% |
! | TTTGGATAGAAAAAAGGAAT+TGG | + | chr5_1:68041211-68041230 | None:intergenic | 25.0% |
!!! | TGTCATTTTGGATAGAAAAA+AGG | + | chr5_1:68041217-68041236 | None:intergenic | 25.0% |
!!! | TTTTTTCTATCCAAAATGAC+AGG | - | chr5_1:68041216-68041235 | Msa0746040:three_prime_UTR | 25.0% |
! | AAGAACATAGAAATTGTTGA+AGG | + | chr5_1:68041358-68041377 | None:intergenic | 25.0% |
! | AACAATTTCTATGTTCTTCT+TGG | - | chr5_1:68041360-68041379 | Msa0746040:three_prime_UTR | 25.0% |
! | AATATTAAAACTTACGGTCA+AGG | + | chr5_1:68041670-68041689 | None:intergenic | 25.0% |
!!! | ATTCATTTTTAACCTCTCTA+TGG | - | chr5_1:68041877-68041896 | Msa0746040:intron | 25.0% |
! | GTATTGGATATGAAGAATTA+TGG | - | chr5_1:68041901-68041920 | Msa0746040:intron | 25.0% |
! | TATGAAGAATTATGGAATGT+TGG | - | chr5_1:68041909-68041928 | Msa0746040:intron | 25.0% |
! | AAAAGACCAAAAACTCAATT+TGG | + | chr5_1:68042116-68042135 | None:intergenic | 25.0% |
!!! | TTTTTTTTATCCATTGATCG+TGG | - | chr5_1:68042133-68042152 | Msa0746040:intron | 25.0% |
!!! | CAGAGTTTATTTATTTTGTG+AGG | - | chr5_1:68042208-68042227 | Msa0746040:intron | 25.0% |
!!! | AGTTTATTTATTTTGTGAGG+TGG | - | chr5_1:68042211-68042230 | Msa0746040:intron | 25.0% |
!!! | GTTTATTTATTTTGTGAGGT+GGG | - | chr5_1:68042212-68042231 | Msa0746040:intron | 25.0% |
! | AAATGATATATATTTCCGAC+CGG | - | chr5_1:68042273-68042292 | Msa0746040:intron | 25.0% |
! | GGTGTAAATTTGATATTGAT+TGG | - | chr5_1:68042591-68042610 | Msa0746040:CDS | 25.0% |
!! | ATTTGATATTGATTGGAATG+TGG | - | chr5_1:68042598-68042617 | Msa0746040:CDS | 25.0% |
!!! | TATCCTTCTTTTTCACATTA+TGG | - | chr5_1:68042838-68042857 | Msa0746040:CDS | 25.0% |
!!! | ATCCTTCTTTTTCACATTAT+GGG | - | chr5_1:68042839-68042858 | Msa0746040:CDS | 25.0% |
! | GTGGCAATAAATCAATAATA+AGG | + | chr5_1:68043110-68043129 | None:intergenic | 25.0% |
!!! | ATTATTGATTTATTGCCACA+TGG | - | chr5_1:68043111-68043130 | Msa0746040:intron | 25.0% |
!! | ATTTAAAATGGGAACAAATG+GGG | + | chr5_1:68043229-68043248 | None:intergenic | 25.0% |
! | AGATAGATTTACTCATTTAC+AGG | + | chr5_1:68043382-68043401 | None:intergenic | 25.0% |
! | AAGAAAAGAAACAAAAGAAG+TGG | - | chr5_1:68043591-68043610 | Msa0746040:intron | 25.0% |
! | ACAATGAATACAATCTATCT+TGG | - | chr5_1:68043683-68043702 | Msa0746040:intron | 25.0% |
! | ATTGCAACAAGAACAAAATT+AGG | + | chr5_1:68043759-68043778 | None:intergenic | 25.0% |
! | AATATTTCATCAAACTCATG+TGG | - | chr5_1:68043781-68043800 | Msa0746040:intron | 25.0% |
!! | TGACAAAAAAAATTGGTAAC+AGG | + | chr5_1:68043811-68043830 | None:intergenic | 25.0% |
! | GTAAGTGGAATATATTGTAT+TGG | - | chr5_1:68043967-68043986 | Msa0746040:intron | 25.0% |
!!! | GGACACTTTTTTTTAGAAAA+TGG | - | chr5_1:68044077-68044096 | Msa0746040:intron | 25.0% |
! | TACTGCTTTAATTAATACGT+TGG | + | chr5_1:68044323-68044342 | None:intergenic | 25.0% |
! | AATTGATTGTTCACTATGAT+TGG | + | chr5_1:68044578-68044597 | None:intergenic | 25.0% |
!! | TTTGATAATATAGGTTATGG+TGG | - | chr5_1:68044611-68044630 | Msa0746040:intron | 25.0% |
! | TAGCTATATGATATAGAAGT+GGG | + | chr5_1:68044917-68044936 | None:intergenic | 25.0% |
! | CTATTAAGAACTTAACAAAG+TGG | - | chr5_1:68045288-68045307 | Msa0746040:intron | 25.0% |
! | TGCCCAAATTGTATAAAAAA+AGG | - | chr5_1:68045477-68045496 | Msa0746040:intron | 25.0% |
! | GCCCAAATTGTATAAAAAAA+GGG | - | chr5_1:68045478-68045497 | Msa0746040:intron | 25.0% |
!!! | CCCCTTTTTTTATACAATTT+GGG | + | chr5_1:68045482-68045501 | None:intergenic | 25.0% |
! | CCCAAATTGTATAAAAAAAG+GGG | - | chr5_1:68045479-68045498 | Msa0746040:intron | 25.0% |
!!! | ACCCCTTTTTTTATACAATT+TGG | + | chr5_1:68045483-68045502 | None:intergenic | 25.0% |
! | AAATGTTAACTTATGTCCTA+AGG | + | chr5_1:68045651-68045670 | None:intergenic | 25.0% |
!!! | GTTCAATACTCACTTTTTTT+AGG | + | chr5_1:68045675-68045694 | None:intergenic | 25.0% |
! | AAAATCACTCTGATTGAAAA+AGG | - | chr5_1:68045760-68045779 | Msa0746040:intron | 25.0% |
!! | CAAAAATTTATTAAGCATCG+TGG | + | chr5_1:68045905-68045924 | None:intergenic | 25.0% |
!! | CACGATGCTTAATAAATTTT+TGG | - | chr5_1:68045903-68045922 | Msa0746040:CDS | 25.0% |
!! | TTTTTGCTTATATTTGTGAC+CGG | + | chr5_1:68046115-68046134 | None:intergenic | 25.0% |
! | CATTCAATAAATGATGTATG+TGG | - | chr5_1:68046041-68046060 | Msa0746040:CDS | 25.0% |
!! | TTTTTGCTTATATTTGTGAC+CGG | - | chr5_1:68046115-68046134 | Msa0746040:CDS | 25.0% |
!! | TGTTTTCCTATAGTTATTGA+AGG | - | chr5_1:68046268-68046287 | Msa0746040:CDS | 25.0% |
!!! | TGATTGTGTGTTTCTTTTTT+CGG | - | chr5_1:68046296-68046315 | Msa0746040:CDS | 25.0% |
GAGAAGAAGAATGATTGTTA+AGG | + | chr5_1:68041168-68041187 | None:intergenic | 30.0% | |
TAGAAAAAAGGAATTGGGTA+AGG | + | chr5_1:68041205-68041224 | None:intergenic | 30.0% | |
! | AAAAAGGATTTGAGGTTGAA+AGG | + | chr5_1:68041333-68041352 | None:intergenic | 30.0% |
GAAATTGTTGAAGGTGAAAA+AGG | + | chr5_1:68041349-68041368 | None:intergenic | 30.0% | |
AACAAAGAGACAGATGAAAA+GGG | + | chr5_1:68041397-68041416 | None:intergenic | 30.0% | |
TAACAAAGAGACAGATGAAA+AGG | + | chr5_1:68041398-68041417 | None:intergenic | 30.0% | |
AATGAAACTTCCCAAAACAA+GGG | + | chr5_1:68041604-68041623 | None:intergenic | 30.0% | |
TTGATATGAAATCGTTTGGT+CGG | - | chr5_1:68041809-68041828 | Msa0746040:intron | 30.0% | |
ATTGAGTCGTAAGAAAATTG+TGG | + | chr5_1:68041967-68041986 | None:intergenic | 30.0% | |
! | GAATGACCAAATTGAGTTTT+TGG | - | chr5_1:68042107-68042126 | Msa0746040:intron | 30.0% |
AATGATATATATTTCCGACC+GGG | - | chr5_1:68042274-68042293 | Msa0746040:intron | 30.0% | |
GTGAATGATATGATGTTTGA+AGG | - | chr5_1:68042311-68042330 | Msa0746040:intron | 30.0% | |
AACCAATAAGTTTCAACACA+TGG | - | chr5_1:68042643-68042662 | Msa0746040:CDS | 30.0% | |
AACCATGTGTTGAAACTTAT+TGG | + | chr5_1:68042648-68042667 | None:intergenic | 30.0% | |
ATAAGAAAAACAATCGCTAC+CGG | + | chr5_1:68042684-68042703 | None:intergenic | 30.0% | |
AAGTGTCCTTTACTCAAATA+AGG | + | chr5_1:68042768-68042787 | None:intergenic | 30.0% | |
TTCCCATAATGTGAAAAAGA+AGG | + | chr5_1:68042844-68042863 | None:intergenic | 30.0% | |
GTTATCTTTGTGATGAATAG+AGG | - | chr5_1:68043072-68043091 | Msa0746040:intron | 30.0% | |
ATTAACCAAATCATATGGCA+GGG | + | chr5_1:68043561-68043580 | None:intergenic | 30.0% | |
AATTAACCAAATCATATGGC+AGG | + | chr5_1:68043562-68043581 | None:intergenic | 30.0% | |
GCACAATTAACCAAATCATA+TGG | + | chr5_1:68043566-68043585 | None:intergenic | 30.0% | |
ATGCAGTTAGCAATTTCAAT+GGG | + | chr5_1:68043656-68043675 | None:intergenic | 30.0% | |
TGTATAAATAAAGGGGTAAG+TGG | - | chr5_1:68043952-68043971 | Msa0746040:intron | 30.0% | |
!! | AAAAAGTGTCCCAAAATAAC+TGG | + | chr5_1:68044068-68044087 | None:intergenic | 30.0% |
CAATAAAGCAGCTTCATTAT+TGG | + | chr5_1:68044152-68044171 | None:intergenic | 30.0% | |
!!! | TTCTGTAATTGGTTTTTTGC+AGG | - | chr5_1:68044176-68044195 | Msa0746040:intron | 30.0% |
!!! | AAAATGGTGCTATCTGTTTT+TGG | - | chr5_1:68044218-68044237 | Msa0746040:intron | 30.0% |
!!! | AAATGGTGCTATCTGTTTTT+GGG | - | chr5_1:68044219-68044238 | Msa0746040:intron | 30.0% |
TCATATTATGGATGACAAGA+AGG | - | chr5_1:68044365-68044384 | Msa0746040:intron | 30.0% | |
ACATGACACTAACATGATAT+TGG | + | chr5_1:68044519-68044538 | None:intergenic | 30.0% | |
AATACCAAACAGAAAACAAG+AGG | - | chr5_1:68044650-68044669 | Msa0746040:intron | 30.0% | |
ATACCAAACAGAAAACAAGA+GGG | - | chr5_1:68044651-68044670 | Msa0746040:intron | 30.0% | |
ATGAATGCAAGAAATTACCT+TGG | - | chr5_1:68044694-68044713 | Msa0746040:intron | 30.0% | |
AGTAACAAAATTAGGTTCCA+AGG | + | chr5_1:68044714-68044733 | None:intergenic | 30.0% | |
! | TGGAACCTAATTTTGTTACT+TGG | - | chr5_1:68044714-68044733 | Msa0746040:intron | 30.0% |
CTAGCTATATGATATAGAAG+TGG | + | chr5_1:68044918-68044937 | None:intergenic | 30.0% | |
CACTTCTATATCATATAGCT+AGG | - | chr5_1:68044916-68044935 | Msa0746040:CDS | 30.0% | |
GCAAATAATTTACCTAGAGA+TGG | + | chr5_1:68045131-68045150 | None:intergenic | 30.0% | |
ATTGTGTGTCTGAATTTCAT+TGG | - | chr5_1:68045424-68045443 | Msa0746040:intron | 30.0% | |
CTTCTATAACTCACTTGTAA+GGG | + | chr5_1:68045457-68045476 | None:intergenic | 30.0% | |
ACTTCTATAACTCACTTGTA+AGG | + | chr5_1:68045458-68045477 | None:intergenic | 30.0% | |
!!! | GCTTTTGTTTTTGGAACAAA+TGG | - | chr5_1:68045814-68045833 | Msa0746040:intron | 30.0% |
AGAAATCAATTTGTCAACCA+CGG | + | chr5_1:68045868-68045887 | None:intergenic | 30.0% | |
!!! | TTTTGGTTTTTGAGGTAAGA+AGG | + | chr5_1:68045962-68045981 | None:intergenic | 30.0% |
TTACCTCAAAAACCAAAATG+TGG | - | chr5_1:68045964-68045983 | Msa0746040:CDS | 30.0% | |
!!! | TATCCACATTTTGGTTTTTG+AGG | + | chr5_1:68045970-68045989 | None:intergenic | 30.0% |
GATGTATGTTGTCTACAATA+AGG | + | chr5_1:68046068-68046087 | None:intergenic | 30.0% | |
ATGTAGATATTACTAGGCAA+AGG | - | chr5_1:68046149-68046168 | Msa0746040:CDS | 30.0% | |
ACTCTTCCTTCAATAACTAT+AGG | + | chr5_1:68046277-68046296 | None:intergenic | 30.0% | |
!!! | GATTGTGTGTTTCTTTTTTC+GGG | - | chr5_1:68046297-68046316 | Msa0746040:CDS | 30.0% |
ACAAACCGTAAAACATAGAA+AGG | + | chr5_1:68046352-68046371 | None:intergenic | 30.0% | |
TGATTGTTAAGGTTGAGTGT+TGG | + | chr5_1:68041157-68041176 | None:intergenic | 35.0% | |
AAGGATTGCTTTGTGTTCTA+TGG | + | chr5_1:68041314-68041333 | None:intergenic | 35.0% | |
TGAAGGTGAAAAAGGATTTG+AGG | + | chr5_1:68041341-68041360 | None:intergenic | 35.0% | |
CAGATGAAAAGGGACAATAA+AGG | + | chr5_1:68041387-68041406 | None:intergenic | 35.0% | |
! | ATGTTACGGCTATTGTTGTT+GGG | + | chr5_1:68041432-68041451 | None:intergenic | 35.0% |
CAATAACAGCAAGCATGTTA+CGG | + | chr5_1:68041446-68041465 | None:intergenic | 35.0% | |
! | TTATTGCTTGGGTTTTCAGT+TGG | - | chr5_1:68041460-68041479 | Msa0746040:intron | 35.0% |
!!! | GATGTCATTACCCTTGTTTT+GGG | - | chr5_1:68041591-68041610 | Msa0746040:three_prime_UTR | 35.0% |
GAATGAAACTTCCCAAAACA+AGG | + | chr5_1:68041605-68041624 | None:intergenic | 35.0% | |
TATGAACATGAACAACACGA+TGG | - | chr5_1:68041766-68041785 | Msa0746040:intron | 35.0% | |
TTAACCTCTCTATGGAGTAT+TGG | - | chr5_1:68041885-68041904 | Msa0746040:intron | 35.0% | |
ATATCCAATACTCCATAGAG+AGG | + | chr5_1:68041892-68041911 | None:intergenic | 35.0% | |
! | TTTTTATCCATTGATCGTGG+AGG | - | chr5_1:68042136-68042155 | Msa0746040:intron | 35.0% |
! | TTTTATCCATTGATCGTGGA+GGG | - | chr5_1:68042137-68042156 | Msa0746040:intron | 35.0% |
ATGATATATATTTCCGACCG+GGG | - | chr5_1:68042275-68042294 | Msa0746040:intron | 35.0% | |
! | AATCCAGCGCTATTGTTATT+GGG | - | chr5_1:68042363-68042382 | Msa0746040:intron | 35.0% |
!!! | AAACTTATTGGTTTTGCACC+AGG | + | chr5_1:68042636-68042655 | None:intergenic | 35.0% |
!! | ATGGTTCTTCTTTGCTTTTC+CGG | - | chr5_1:68042662-68042681 | Msa0746040:CDS | 35.0% |
TTCTCTGCTTGATTTACCTA+AGG | - | chr5_1:68042718-68042737 | Msa0746040:CDS | 35.0% | |
TGCTTGATTTACCTAAGGAA+GGG | - | chr5_1:68042723-68042742 | Msa0746040:CDS | 35.0% | |
! | CTCTCTCCTTATTTGAGTAA+AGG | - | chr5_1:68042759-68042778 | Msa0746040:CDS | 35.0% |
AGTTCATTTAGCATAGTGTC+CGG | - | chr5_1:68043527-68043546 | Msa0746040:intron | 35.0% | |
GATGCAGTTAGCAATTTCAA+TGG | + | chr5_1:68043657-68043676 | None:intergenic | 35.0% | |
CAAAGTAGGTCAATTATACC+GGG | + | chr5_1:68043908-68043927 | None:intergenic | 35.0% | |
CCAAAGTAGGTCAATTATAC+CGG | + | chr5_1:68043909-68043928 | None:intergenic | 35.0% | |
TCTGTGTGAAAAACCAAAGT+AGG | + | chr5_1:68043922-68043941 | None:intergenic | 35.0% | |
! | TTGAAATGGGCCAGTTATTT+TGG | - | chr5_1:68044055-68044074 | Msa0746040:intron | 35.0% |
!! | TGAAATGGGCCAGTTATTTT+GGG | - | chr5_1:68044056-68044075 | Msa0746040:intron | 35.0% |
AGAAAATGGGTCAGTTATTC+CGG | - | chr5_1:68044091-68044110 | Msa0746040:intron | 35.0% | |
! | ATTTTCTCTGCGAAAGACAT+GGG | + | chr5_1:68044203-68044222 | None:intergenic | 35.0% |
!!! | AATGGTGCTATCTGTTTTTG+GGG | - | chr5_1:68044220-68044239 | Msa0746040:intron | 35.0% |
TGCAGTTGCTGATCATATTA+TGG | - | chr5_1:68044353-68044372 | Msa0746040:intron | 35.0% | |
CAGCTCCAAGTAACAAAATT+AGG | + | chr5_1:68044722-68044741 | None:intergenic | 35.0% | |
!! | CTAATTTTGTTACTTGGAGC+TGG | - | chr5_1:68044720-68044739 | Msa0746040:intron | 35.0% |
CTTAGAAGATGCTCCATATT+TGG | - | chr5_1:68044809-68044828 | Msa0746040:CDS | 35.0% | |
CTACTTATAAGACTAACTGC+AGG | + | chr5_1:68044843-68044862 | None:intergenic | 35.0% | |
AAAAGCAACTACATTTGAGG+GGG | + | chr5_1:68045021-68045040 | None:intergenic | 35.0% | |
CAAAAGCAACTACATTTGAG+GGG | + | chr5_1:68045022-68045041 | None:intergenic | 35.0% | |
GCAAAAGCAACTACATTTGA+GGG | + | chr5_1:68045023-68045042 | None:intergenic | 35.0% | |
AGCAAAAGCAACTACATTTG+AGG | + | chr5_1:68045024-68045043 | None:intergenic | 35.0% | |
!!! | AATGTAGTTGCTTTTGCTAC+TGG | - | chr5_1:68045026-68045045 | Msa0746040:CDS | 35.0% |
ATTCAAGATACGCTCAAAGT+TGG | - | chr5_1:68045059-68045078 | Msa0746040:CDS | 35.0% | |
! | TCAGTTTTTATGCCATCTCT+AGG | - | chr5_1:68045116-68045135 | Msa0746040:CDS | 35.0% |
AAATTCAGACACACAATTGC+GGG | + | chr5_1:68045421-68045440 | None:intergenic | 35.0% | |
GAAATTCAGACACACAATTG+CGG | + | chr5_1:68045422-68045441 | None:intergenic | 35.0% | |
!! | TCATGTTAATTTGTGCCCTT+AGG | - | chr5_1:68045502-68045521 | Msa0746040:intron | 35.0% |
!! | CATGTTAATTTGTGCCCTTA+GGG | - | chr5_1:68045503-68045522 | Msa0746040:intron | 35.0% |
TTCTTTAACATGTGCCCTAA+GGG | + | chr5_1:68045520-68045539 | None:intergenic | 35.0% | |
ATTCTTTAACATGTGCCCTA+AGG | + | chr5_1:68045521-68045540 | None:intergenic | 35.0% | |
! | GGATTCTGATGTCATACTTT+TGG | - | chr5_1:68045781-68045800 | Msa0746040:intron | 35.0% |
!! | AGATTTTGTTTGGCATCCAT+TGG | + | chr5_1:68045843-68045862 | None:intergenic | 35.0% |
! | TGTATTGGGTATCCACATTT+TGG | + | chr5_1:68045979-68045998 | None:intergenic | 35.0% |
ATCTACATATATACACCCTC+CGG | + | chr5_1:68046137-68046156 | None:intergenic | 35.0% | |
TAGATATTACTAGGCAAAGG+AGG | - | chr5_1:68046152-68046171 | Msa0746040:CDS | 35.0% | |
!! | ACTGTGTTCTCCTGTCATTT+TGG | + | chr5_1:68041229-68041248 | None:intergenic | 40.0% |
!! | GAGGTTGATGTTGGATTCAT+CGG | + | chr5_1:68041265-68041284 | None:intergenic | 40.0% |
TTCTATGGAGTGGTAGAAGT+GGG | + | chr5_1:68041299-68041318 | None:intergenic | 40.0% | |
TTGCTTTGTGTTCTATGGAG+TGG | + | chr5_1:68041309-68041328 | None:intergenic | 40.0% | |
CATGTTACGGCTATTGTTGT+TGG | + | chr5_1:68041433-68041452 | None:intergenic | 40.0% | |
!! | ACATGCTTGCTGTTATTGCT+TGG | - | chr5_1:68041448-68041467 | Msa0746040:intron | 40.0% |
!! | CATGCTTGCTGTTATTGCTT+GGG | - | chr5_1:68041449-68041468 | Msa0746040:intron | 40.0% |
CACATAGAAGTAACAGGAAG+TGG | + | chr5_1:68041504-68041523 | None:intergenic | 40.0% | |
AGAGGACACATAGAAGTAAC+AGG | + | chr5_1:68041510-68041529 | None:intergenic | 40.0% | |
CAGAAGCAATTCCAAAGAGA+GGG | + | chr5_1:68041542-68041561 | None:intergenic | 40.0% | |
TACCGTTGCTCATTCTTACA+TGG | - | chr5_1:68041566-68041585 | Msa0746040:intron | 40.0% | |
GTCCATGTAAGAATGAGCAA+CGG | + | chr5_1:68041571-68041590 | None:intergenic | 40.0% | |
!! | CGATGTCATTACCCTTGTTT+TGG | - | chr5_1:68041590-68041609 | Msa0746040:three_prime_UTR | 40.0% |
CTACAACGTTCACAGAAGAT+TGG | - | chr5_1:68041644-68041663 | Msa0746040:three_prime_UTR | 40.0% | |
TCACAACCAATCATAAACCC+CGG | + | chr5_1:68042295-68042314 | None:intergenic | 40.0% | |
! | AACAATAGCGCTGGATTCAA+CGG | + | chr5_1:68042360-68042379 | None:intergenic | 40.0% |
GAATCCAGCGCTATTGTTAT+TGG | - | chr5_1:68042362-68042381 | Msa0746040:intron | 40.0% | |
GGTGAATAAGTTCAGTAGAG+CGG | - | chr5_1:68042509-68042528 | Msa0746040:CDS | 40.0% | |
! | AAAGTACTCATCCCTCCAAT+TGG | + | chr5_1:68042561-68042580 | None:intergenic | 40.0% |
CTGCTTGATTTACCTAAGGA+AGG | - | chr5_1:68042722-68042741 | Msa0746040:CDS | 40.0% | |
TGAGTAAAGGACACTTGAAG+AGG | - | chr5_1:68042772-68042791 | Msa0746040:CDS | 40.0% | |
GAGTAAAGGACACTTGAAGA+GGG | - | chr5_1:68042773-68042792 | Msa0746040:CDS | 40.0% | |
AAGAGGGAATTAGAAGCTCT+AGG | - | chr5_1:68042789-68042808 | Msa0746040:CDS | 40.0% | |
ATTTATTGCCACATGGCTCA+TGG | - | chr5_1:68043118-68043137 | Msa0746040:CDS | 40.0% | |
GATATTATCCATGAGCCATG+TGG | + | chr5_1:68043129-68043148 | None:intergenic | 40.0% | |
ATGACACATCCACATTGGAA+TGG | + | chr5_1:68043159-68043178 | None:intergenic | 40.0% | |
TCTCTCTCACTTTCAACCAA+TGG | - | chr5_1:68043178-68043197 | Msa0746040:CDS | 40.0% | |
CACTTTCAACCAATGGTACT+TGG | - | chr5_1:68043185-68043204 | Msa0746040:CDS | 40.0% | |
AATCATATGGCAGGGATAAC+AGG | + | chr5_1:68043553-68043572 | None:intergenic | 40.0% | |
GTTATCCCTGCCATATGATT+TGG | - | chr5_1:68043553-68043572 | Msa0746040:intron | 40.0% | |
TGTACCAGACTTGTGTGAAA+TGG | - | chr5_1:68043625-68043644 | Msa0746040:intron | 40.0% | |
CAATCCATTTCACACAAGTC+TGG | + | chr5_1:68043632-68043651 | None:intergenic | 40.0% | |
AATTTATACTACCTCCGTCC+CGG | - | chr5_1:68043887-68043906 | Msa0746040:intron | 40.0% | |
CCGGTATAATTGACCTACTT+TGG | - | chr5_1:68043906-68043925 | Msa0746040:intron | 40.0% | |
GAAAATGGGTCAGTTATTCC+GGG | - | chr5_1:68044092-68044111 | Msa0746040:intron | 40.0% | |
AGCAGCTTCATTATTGGTCA+AGG | + | chr5_1:68044146-68044165 | None:intergenic | 40.0% | |
! | CATTTTCTCTGCGAAAGACA+TGG | + | chr5_1:68044204-68044223 | None:intergenic | 40.0% |
CATGTCTTTCGCAGAGAAAA+TGG | - | chr5_1:68044202-68044221 | Msa0746040:intron | 40.0% | |
ATGGAAAAAAGTTCCCCATC+CGG | + | chr5_1:68044407-68044426 | None:intergenic | 40.0% | |
!!! | ACTTTTTTCCATGGCCTTGT+TGG | - | chr5_1:68044415-68044434 | Msa0746040:intron | 40.0% |
!!! | TCACCCTCTTGTTTTCTGTT+TGG | + | chr5_1:68044657-68044676 | None:intergenic | 40.0% |
TGGGATAATAAGTGTAGCAG+TGG | + | chr5_1:68044898-68044917 | None:intergenic | 40.0% | |
ATTCAGTAGCAATTGCTCCT+GGG | + | chr5_1:68044974-68044993 | None:intergenic | 40.0% | |
AATTCAGTAGCAATTGCTCC+TGG | + | chr5_1:68044975-68044994 | None:intergenic | 40.0% | |
TGGCATAAAAACTGAGAGCA+CGG | + | chr5_1:68045111-68045130 | None:intergenic | 40.0% | |
TTAACAAAGTGGCGTTCGTA+AGG | - | chr5_1:68045299-68045318 | Msa0746040:intron | 40.0% | |
GTTCCTTAACATGTGTCCTT+AGG | - | chr5_1:68045632-68045651 | Msa0746040:intron | 40.0% | |
TGTCCTAAGGACACATGTTA+AGG | + | chr5_1:68045638-68045657 | None:intergenic | 40.0% | |
!!! | TGTCATACTTTTGGTGTTGC+AGG | - | chr5_1:68045790-68045809 | Msa0746040:intron | 40.0% |
!!! | GTTGCAGGTGCTTTTGTTTT+TGG | - | chr5_1:68045805-68045824 | Msa0746040:intron | 40.0% |
TTGGAACAAATGGTGTCCAA+TGG | - | chr5_1:68045824-68045843 | Msa0746040:intron | 40.0% | |
! | AACCACGGAGAGATTTTGTT+TGG | + | chr5_1:68045853-68045872 | None:intergenic | 40.0% |
!!! | GGTTTTTGAGGTAAGAAGGA+AGG | + | chr5_1:68045958-68045977 | None:intergenic | 40.0% |
TGCTTATATTTGTGACCGGA+GGG | + | chr5_1:68046119-68046138 | None:intergenic | 40.0% | |
TTGCTTATATTTGTGACCGG+AGG | + | chr5_1:68046118-68046137 | None:intergenic | 40.0% | |
TTGCTTATATTTGTGACCGG+AGG | - | chr5_1:68046118-68046137 | Msa0746040:CDS | 40.0% | |
TGCTTATATTTGTGACCGGA+GGG | - | chr5_1:68046119-68046138 | Msa0746040:CDS | 40.0% | |
ATATTACTAGGCAAAGGAGG+AGG | - | chr5_1:68046155-68046174 | Msa0746040:CDS | 40.0% | |
TATTACTAGGCAAAGGAGGA+GGG | - | chr5_1:68046156-68046175 | Msa0746040:CDS | 40.0% | |
CCGTAAAACATAGAAAGGCA+CGG | + | chr5_1:68046347-68046366 | None:intergenic | 40.0% | |
! | CCGTGCCTTTCTATGTTTTA+CGG | - | chr5_1:68046344-68046363 | Msa0746040:five_prime_UTR | 40.0% |
!! | CTTCAGGTTGAGGTTGATGT+TGG | + | chr5_1:68041274-68041293 | None:intergenic | 45.0% |
CAACATCAACCTCAACCTGA+AGG | - | chr5_1:68041272-68041291 | Msa0746040:three_prime_UTR | 45.0% | |
TCTATGGAGTGGTAGAAGTG+GGG | + | chr5_1:68041298-68041317 | None:intergenic | 45.0% | |
GTTCTATGGAGTGGTAGAAG+TGG | + | chr5_1:68041300-68041319 | None:intergenic | 45.0% | |
! | TTGCTTGGGTTTTCAGTTGG+TGG | - | chr5_1:68041463-68041482 | Msa0746040:intron | 45.0% |
! | TGCTTGGGTTTTCAGTTGGT+GGG | - | chr5_1:68041464-68041483 | Msa0746040:intron | 45.0% |
AACAGGAAGTGGTAAAGCAG+AGG | + | chr5_1:68041493-68041512 | None:intergenic | 45.0% | |
AAGAGAGGGAACAGAAACAG+AGG | + | chr5_1:68041528-68041547 | None:intergenic | 45.0% | |
!! | CTGTTTCTGTTCCCTCTCTT+TGG | - | chr5_1:68041528-68041547 | Msa0746040:intron | 45.0% |
GCAGAAGCAATTCCAAAGAG+AGG | + | chr5_1:68041543-68041562 | None:intergenic | 45.0% | |
GTGAACGTTGTAGCGTTCAA+CGG | + | chr5_1:68041637-68041656 | None:intergenic | 45.0% | |
AACCAATCATAAACCCCGGT+CGG | + | chr5_1:68042291-68042310 | None:intergenic | 45.0% | |
AAGGTGACATCAGTGTTCTG+TGG | - | chr5_1:68042330-68042349 | Msa0746040:intron | 45.0% | |
AGGTGACATCAGTGTTCTGT+GGG | - | chr5_1:68042331-68042350 | Msa0746040:intron | 45.0% | |
AGACCCAATAACAATAGCGC+TGG | + | chr5_1:68042369-68042388 | None:intergenic | 45.0% | |
CATGCTCACAAAGAATGACG+TGG | + | chr5_1:68042397-68042416 | None:intergenic | 45.0% | |
CGTCATTCTTTGTGAGCATG+TGG | - | chr5_1:68042397-68042416 | Msa0746040:intron | 45.0% | |
GAATAAGTTCAGTAGAGCGG+TGG | - | chr5_1:68042512-68042531 | Msa0746040:CDS | 45.0% | |
TTTATGCCGTGCCAATTGGA+GGG | - | chr5_1:68042547-68042566 | Msa0746040:CDS | 45.0% | |
GAGGGATGAGTACTTTGACA+GGG | - | chr5_1:68042565-68042584 | Msa0746040:CDS | 45.0% | |
ATGAGTACTTTGACAGGGAC+AGG | - | chr5_1:68042570-68042589 | Msa0746040:CDS | 45.0% | |
!! | ATGTGGAAGAGTCTTGTTCC+TGG | - | chr5_1:68042615-68042634 | Msa0746040:CDS | 45.0% |
GGCTCATGGATAATATCAGC+TGG | - | chr5_1:68043132-68043151 | Msa0746040:CDS | 45.0% | |
GAGAGATGACACATCCACAT+TGG | + | chr5_1:68043164-68043183 | None:intergenic | 45.0% | |
TTCGTAGGTCCAAGTACCAT+TGG | + | chr5_1:68043197-68043216 | None:intergenic | 45.0% | |
!! | ATGGGGTCTATTGGTTTCGT+AGG | + | chr5_1:68043212-68043231 | None:intergenic | 45.0% |
TGGGAACAAATGGGGTCTAT+TGG | + | chr5_1:68043221-68043240 | None:intergenic | 45.0% | |
GTAGGTCAATTATACCGGGA+CGG | + | chr5_1:68043904-68043923 | None:intergenic | 45.0% | |
AGGATCACAGATGACATTCC+CGG | - | chr5_1:68044385-68044404 | Msa0746040:intron | 45.0% | |
TGGAAAAAAGTTCCCCATCC+GGG | + | chr5_1:68044406-68044425 | None:intergenic | 45.0% | |
!!! | GGATGGGGAACTTTTTTCCA+TGG | - | chr5_1:68044406-68044425 | Msa0746040:intron | 45.0% |
TGACACTTCCATCACCAACA+AGG | + | chr5_1:68044432-68044451 | None:intergenic | 45.0% | |
ACAAGAGGGTGAGAAGCTAA+TGG | - | chr5_1:68044665-68044684 | Msa0746040:intron | 45.0% | |
! | AGGGTGAGAAGCTAATGGAT+TGG | - | chr5_1:68044670-68044689 | Msa0746040:intron | 45.0% |
!!! | GCTGGTTTTGCTTTAGCTGA+TGG | - | chr5_1:68044738-68044757 | Msa0746040:intron | 45.0% |
GCTGATGGAGTTCAATCTAG+TGG | - | chr5_1:68044753-68044772 | Msa0746040:intron | 45.0% | |
GCAGGAGCAATTGCCAAATA+TGG | + | chr5_1:68044825-68044844 | None:intergenic | 45.0% | |
CCTGGGATCATAAGAAGAAG+AGG | + | chr5_1:68044957-68044976 | None:intergenic | 45.0% | |
CCTCTTCTTCTTATGATCCC+AGG | - | chr5_1:68044954-68044973 | Msa0746040:CDS | 45.0% | |
! | CAAAGTTGGTCTGCCACTTA+AGG | - | chr5_1:68045073-68045092 | Msa0746040:CDS | 45.0% |
TGCCAAACAAAATCTCTCCG+TGG | - | chr5_1:68045848-68045867 | Msa0746040:intron | 45.0% | |
ATTACTAGGCAAAGGAGGAG+GGG | - | chr5_1:68046157-68046176 | Msa0746040:CDS | 45.0% | |
!!! | CAATAATTTAAATTTAAAAT+GGG | + | chr5_1:68043240-68043259 | None:intergenic | 5.0% |
!! | TCAATAATTTAAATTTAAAA+TGG | + | chr5_1:68043241-68043260 | None:intergenic | 5.0% |
!! | CTTTAAATTAAAAAATTTAA+GGG | + | chr5_1:68045171-68045190 | None:intergenic | 5.0% |
!! | ACTTTAAATTAAAAAATTTA+AGG | + | chr5_1:68045172-68045191 | None:intergenic | 5.0% |
CCTAATCCCTCCACGATCAA+TGG | + | chr5_1:68042146-68042165 | None:intergenic | 50.0% | |
CCATTGATCGTGGAGGGATT+AGG | - | chr5_1:68042143-68042162 | Msa0746040:intron | 50.0% | |
TTCCGACCGGGGTTTATGAT+TGG | - | chr5_1:68042286-68042305 | Msa0746040:intron | 50.0% | |
GGTGACATCAGTGTTCTGTG+GGG | - | chr5_1:68042332-68042351 | Msa0746040:intron | 50.0% | |
!! | CAGTAGAGCGGTGGTTCTAA+CGG | - | chr5_1:68042521-68042540 | Msa0746040:CDS | 50.0% |
GTGGTTTATGCCGTGCCAAT+TGG | - | chr5_1:68042543-68042562 | Msa0746040:CDS | 50.0% | |
GTTTATGCCGTGCCAATTGG+AGG | - | chr5_1:68042546-68042565 | Msa0746040:CDS | 50.0% | |
ACTCATCCCTCCAATTGGCA+CGG | + | chr5_1:68042556-68042575 | None:intergenic | 50.0% | |
GGAGGGATGAGTACTTTGAC+AGG | - | chr5_1:68042564-68042583 | Msa0746040:CDS | 50.0% | |
TCAGCTGGTCCATTCCAATG+TGG | - | chr5_1:68043147-68043166 | Msa0746040:CDS | 50.0% | |
ATATGGCAGGGATAACAGGC+CGG | + | chr5_1:68043549-68043568 | None:intergenic | 50.0% | |
ATGGGTCAGTTATTCCGGGA+CGG | - | chr5_1:68044096-68044115 | Msa0746040:intron | 50.0% | |
TCACAGATGACATTCCCGGA+TGG | - | chr5_1:68044389-68044408 | Msa0746040:intron | 50.0% | |
CACAGATGACATTCCCGGAT+GGG | - | chr5_1:68044390-68044409 | Msa0746040:intron | 50.0% | |
ACAGATGACATTCCCGGATG+GGG | - | chr5_1:68044391-68044410 | Msa0746040:intron | 50.0% | |
!! | TTCCATGGCCTTGTTGGTGA+TGG | - | chr5_1:68044421-68044440 | Msa0746040:intron | 50.0% |
TTCCATCACCAACAAGGCCA+TGG | + | chr5_1:68044426-68044445 | None:intergenic | 50.0% | |
ACATTTGAGGGGGTTGACGT+GGG | + | chr5_1:68045011-68045030 | None:intergenic | 50.0% | |
TACATTTGAGGGGGTTGACG+TGG | + | chr5_1:68045012-68045031 | None:intergenic | 50.0% | |
! | GTCTGCCACTTAAGGTTGCT+GGG | - | chr5_1:68045081-68045100 | Msa0746040:CDS | 50.0% |
GCTATCCCAGCAACCTTAAG+TGG | + | chr5_1:68045089-68045108 | None:intergenic | 50.0% | |
TGGATACCCAATACACCCTC+CGG | - | chr5_1:68045984-68046003 | Msa0746040:CDS | 50.0% | |
! | TTGTGACCGGAGGGTGTATT+GGG | + | chr5_1:68045993-68046012 | None:intergenic | 50.0% |
! | TTTGTGACCGGAGGGTGTAT+TGG | + | chr5_1:68046127-68046146 | None:intergenic | 50.0% |
TTACTAGGCAAAGGAGGAGG+GGG | - | chr5_1:68046158-68046177 | Msa0746040:CDS | 50.0% | |
GAGCATGTGGATGCACAACG+TGG | - | chr5_1:68042410-68042429 | Msa0746040:intron | 55.0% | |
AGCTGCCGTGATGTTGATGC+CGG | - | chr5_1:68042434-68042453 | Msa0746040:CDS | 55.0% | |
ACCAACTCCGATTGCTCCGA+CGG | + | chr5_1:68042492-68042511 | None:intergenic | 55.0% | |
!! | TAGAGCGGTGGTTCTAACGG+TGG | - | chr5_1:68042524-68042543 | Msa0746040:CDS | 55.0% |
ACCTAAGGAAGGGCTCAGCT+AGG | - | chr5_1:68042733-68042752 | Msa0746040:CDS | 55.0% | |
CCTAAGGAAGGGCTCAGCTA+GGG | - | chr5_1:68042734-68042753 | Msa0746040:CDS | 55.0% | |
GGTCAATTATACCGGGACGG+AGG | + | chr5_1:68043901-68043920 | None:intergenic | 55.0% | |
GTCAGTTATTCCGGGACGGA+GGG | - | chr5_1:68044100-68044119 | Msa0746040:intron | 55.0% | |
ACATACTACTCCCTCCGTCC+CGG | + | chr5_1:68044113-68044132 | None:intergenic | 55.0% | |
! | GGTCTGCCACTTAAGGTTGC+TGG | - | chr5_1:68045080-68045099 | Msa0746040:CDS | 55.0% |
!! | GAAGTGGGGCCTTCAGGTTG+AGG | + | chr5_1:68041284-68041303 | None:intergenic | 60.0% |
GTGGTAGAAGTGGGGCCTTC+AGG | + | chr5_1:68041290-68041309 | None:intergenic | 60.0% | |
TGCCGTGATGTTGATGCCGG+TGG | - | chr5_1:68042437-68042456 | Msa0746040:CDS | 60.0% | |
GGCCACCGGCATCAACATCA+CGG | + | chr5_1:68042442-68042461 | None:intergenic | 60.0% | |
ATGTTGATGCCGGTGGCCAC+AGG | - | chr5_1:68042444-68042463 | Msa0746040:CDS | 60.0% | |
TGTTGATGCCGGTGGCCACA+GGG | - | chr5_1:68042445-68042464 | Msa0746040:CDS | 60.0% | |
TGTAACAGCCCTGTGGCCAC+CGG | + | chr5_1:68042456-68042475 | None:intergenic | 60.0% | |
TGGCCACAGGGCTGTTACAG+CGG | - | chr5_1:68042457-68042476 | Msa0746040:CDS | 60.0% | |
AACTCCGATTGCTCCGACGG+TGG | + | chr5_1:68042489-68042508 | None:intergenic | 60.0% | |
ACCGTCGGAGCAATCGGAGT+TGG | - | chr5_1:68042488-68042507 | Msa0746040:CDS | 60.0% | |
CCCTAGCTGAGCCCTTCCTT+AGG | + | chr5_1:68042737-68042756 | None:intergenic | 60.0% | |
GGTCAGTTATTCCGGGACGG+AGG | - | chr5_1:68044099-68044118 | Msa0746040:intron | 60.0% | |
CAGCCGCTGTAACAGCCCTG+TGG | + | chr5_1:68042463-68042482 | None:intergenic | 65.0% | |
GCCACCACCGTCGGAGCAAT+CGG | - | chr5_1:68042482-68042501 | Msa0746040:CDS | 65.0% | |
TCCGATTGCTCCGACGGTGG+TGG | + | chr5_1:68042486-68042505 | None:intergenic | 65.0% | |
ACAGCGGCTGCCACCACCGT+CGG | - | chr5_1:68042473-68042492 | Msa0746040:CDS | 70.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr5_1 | gene | 68041148 | 68046420 | 68041148 | ID=Msa0746040;Name=Msa0746040 |
chr5_1 | mRNA | 68041148 | 68046420 | 68041148 | ID=Msa0746040-mRNA-1;Parent=Msa0746040;Name=Msa0746040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=83|1|1|1|0.83|0.71|7|391|548 |
chr5_1 | exon | 68041148 | 68041427 | 68041148 | ID=Msa0746040-mRNA-1:exon:20271;Parent=Msa0746040-mRNA-1 |
chr5_1 | exon | 68041575 | 68041756 | 68041575 | ID=Msa0746040-mRNA-1:exon:20270;Parent=Msa0746040-mRNA-1 |
chr5_1 | exon | 68042431 | 68042944 | 68042431 | ID=Msa0746040-mRNA-1:exon:20269;Parent=Msa0746040-mRNA-1 |
chr5_1 | exon | 68043115 | 68043210 | 68043115 | ID=Msa0746040-mRNA-1:exon:20268;Parent=Msa0746040-mRNA-1 |
chr5_1 | exon | 68043327 | 68043370 | 68043327 | ID=Msa0746040-mRNA-1:exon:20267;Parent=Msa0746040-mRNA-1 |
chr5_1 | exon | 68044758 | 68045235 | 68044758 | ID=Msa0746040-mRNA-1:exon:20266;Parent=Msa0746040-mRNA-1 |
chr5_1 | exon | 68045894 | 68046420 | 68045894 | ID=Msa0746040-mRNA-1:exon:20265;Parent=Msa0746040-mRNA-1 |
chr5_1 | five_prime_UTR | 68046338 | 68046420 | 68046338 | ID=Msa0746040-mRNA-1:five_prime_utr;Parent=Msa0746040-mRNA-1 |
chr5_1 | CDS | 68045894 | 68046337 | 68045894 | ID=Msa0746040-mRNA-1:cds;Parent=Msa0746040-mRNA-1 |
chr5_1 | CDS | 68044758 | 68045235 | 68044758 | ID=Msa0746040-mRNA-1:cds;Parent=Msa0746040-mRNA-1 |
chr5_1 | CDS | 68043327 | 68043370 | 68043327 | ID=Msa0746040-mRNA-1:cds;Parent=Msa0746040-mRNA-1 |
chr5_1 | CDS | 68043115 | 68043210 | 68043115 | ID=Msa0746040-mRNA-1:cds;Parent=Msa0746040-mRNA-1 |
chr5_1 | CDS | 68042431 | 68042944 | 68042431 | ID=Msa0746040-mRNA-1:cds;Parent=Msa0746040-mRNA-1 |
chr5_1 | CDS | 68041686 | 68041756 | 68041686 | ID=Msa0746040-mRNA-1:cds;Parent=Msa0746040-mRNA-1 |
chr5_1 | three_prime_UTR | 68041575 | 68041685 | 68041575 | ID=Msa0746040-mRNA-1:three_prime_utr;Parent=Msa0746040-mRNA-1 |
chr5_1 | three_prime_UTR | 68041148 | 68041427 | 68041148 | ID=Msa0746040-mRNA-1:three_prime_utr;Parent=Msa0746040-mRNA-1 |
Gene Sequence |
Protein sequence |