AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0746040


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746040 MtrunA17_Chr4g0075801 98.358 548 9 0 1 548 1 548 0.0 1080
Msa0746040 MtrunA17_Chr2g0290091 78.435 524 106 4 19 536 6 528 0.0 835
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0746040 AT5G47560.1 63.853 545 179 5 1 534 1 538 0.0 698

Find 146 sgRNAs with CRISPR-Local

Find 352 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AACCATGTGTTGAAACTTAT+TGG 0.130022 5_1:+68044901 None:intergenic
CTGTTTCTGTTCCCTCTCTT+TGG 0.149243 5_1:-68046018 Msa0746040:CDS
AACAATTTCTATGTTCTTCT+TGG 0.178098 5_1:-68046186 Msa0746040:CDS
CTTAGAAGATGCTCCATATT+TGG 0.182122 5_1:-68042737 Msa0746040:CDS
CGATGTCATTACCCTTGTTT+TGG 0.238022 5_1:-68045956 Msa0746040:CDS
GAAATTGTTGAAGGTGAAAA+AGG 0.247635 5_1:+68046200 None:intergenic
TGTATTGGGTATCCACATTT+TGG 0.259681 5_1:+68041570 None:intergenic
ACTGTGTTCTCCTGTCATTT+TGG 0.263152 5_1:+68046320 None:intergenic
CAGCTCCAAGTAACAAAATT+AGG 0.271062 5_1:+68042827 None:intergenic
AAGTGTCCTTTACTCAAATA+AGG 0.271792 5_1:+68044781 None:intergenic
GTGGTAGAAGTGGGGCCTTC+AGG 0.287054 5_1:+68046259 None:intergenic
GAATCCAGCGCTATTGTTAT+TGG 0.299822 5_1:-68045184 Msa0746040:CDS
AAGGATTGCTTTGTGTTCTA+TGG 0.303994 5_1:+68046235 None:intergenic
GGTCTGCCACTTAAGGTTGC+TGG 0.310572 5_1:-68042466 Msa0746040:CDS
GCAGGAGCAATTGCCAAATA+TGG 0.317007 5_1:+68042724 None:intergenic
GGTGTAAATTTGATATTGAT+TGG 0.317954 5_1:-68044955 Msa0746040:CDS
TGCAGTTGCTGATCATATTA+TGG 0.334276 5_1:-68043193 Msa0746040:intron
AATCCAGCGCTATTGTTATT+GGG 0.344059 5_1:-68045183 Msa0746040:CDS
CAAAGTTGGTCTGCCACTTA+AGG 0.364039 5_1:-68042473 Msa0746040:CDS
CATGCTTGCTGTTATTGCTT+GGG 0.364876 5_1:-68046097 Msa0746040:CDS
ACTCTTCCTTCAATAACTAT+AGG 0.381828 5_1:+68041272 None:intergenic
AGGATCACAGATGACATTCC+CGG 0.395895 5_1:-68043161 Msa0746040:CDS
CATGTTACGGCTATTGTTGT+TGG 0.404683 5_1:+68046116 None:intergenic
GTCTGCCACTTAAGGTTGCT+GGG 0.407479 5_1:-68042465 Msa0746040:CDS
ATGTTGATGCCGGTGGCCAC+AGG 0.409144 5_1:-68045102 Msa0746040:CDS
TAACAAAGAGACAGATGAAA+AGG 0.414164 5_1:+68046151 None:intergenic
AGAGGACACATAGAAGTAAC+AGG 0.416408 5_1:+68046039 None:intergenic
GAGAAGAAGAATGATTGTTA+AGG 0.419127 5_1:+68046381 None:intergenic
GTGGTTTATGCCGTGCCAAT+TGG 0.419394 5_1:-68045003 Msa0746040:CDS
GCCACCACCGTCGGAGCAAT+CGG 0.421873 5_1:-68045064 Msa0746040:CDS
CATGTCTTTCGCAGAGAAAA+TGG 0.422210 5_1:-68043344 Msa0746040:CDS
ACATGCTTGCTGTTATTGCT+TGG 0.432445 5_1:-68046098 Msa0746040:CDS
CATTTATGATTGAAAATTTG+AGG 0.439221 5_1:-68041617 Msa0746040:three_prime_UTR
CTTCAGGTTGAGGTTGATGT+TGG 0.451414 5_1:+68046275 None:intergenic
CTCTCTCCTTATTTGAGTAA+AGG 0.456416 5_1:-68044787 Msa0746040:CDS
ATGTTACGGCTATTGTTGTT+GGG 0.457105 5_1:+68046117 None:intergenic
TTCCATGGCCTTGTTGGTGA+TGG 0.468327 5_1:-68043125 Msa0746040:CDS
ATGTGGAAGAGTCTTGTTCC+TGG 0.468609 5_1:-68044931 Msa0746040:CDS
GAAGTGGGGCCTTCAGGTTG+AGG 0.470925 5_1:+68046265 None:intergenic
GTTTATGCCGTGCCAATTGG+AGG 0.471732 5_1:-68045000 Msa0746040:CDS
ATATTACTAGGCAAAGGAGG+AGG 0.478334 5_1:-68041391 Msa0746040:three_prime_UTR
TACCGTTGCTCATTCTTACA+TGG 0.479194 5_1:-68045980 Msa0746040:CDS
ACAAGAGGGTGAGAAGCTAA+TGG 0.479870 5_1:-68042881 Msa0746040:CDS
CTGCTTGATTTACCTAAGGA+AGG 0.481460 5_1:-68044824 Msa0746040:CDS
GCAAATAATTTACCTAGAGA+TGG 0.484625 5_1:+68042418 None:intergenic
AAAGTACTCATCCCTCCAAT+TGG 0.484679 5_1:+68044988 None:intergenic
TCCGATTGCTCCGACGGTGG+TGG 0.485794 5_1:+68045063 None:intergenic
AATTCAGTAGCAATTGCTCC+TGG 0.490731 5_1:+68042574 None:intergenic
GCAAAAGCAACTACATTTGA+GGG 0.492457 5_1:+68042526 None:intergenic
CAATAACAGCAAGCATGTTA+CGG 0.494684 5_1:+68046103 None:intergenic
TTCTCTGCTTGATTTACCTA+AGG 0.497551 5_1:-68044828 Msa0746040:CDS
AACTCCGATTGCTCCGACGG+TGG 0.499273 5_1:+68045060 None:intergenic
AGCAAAAGCAACTACATTTG+AGG 0.499523 5_1:+68042525 None:intergenic
ACAAACCGTAAAACATAGAA+AGG 0.503797 5_1:+68041197 None:intergenic
GAGGTTGATGTTGGATTCAT+CGG 0.508040 5_1:+68046284 None:intergenic
AAGAACATAGAAATTGTTGA+AGG 0.509546 5_1:+68046191 None:intergenic
TATTACTAGGCAAAGGAGGA+GGG 0.510489 5_1:-68041390 Msa0746040:three_prime_UTR
CACATAGAAGTAACAGGAAG+TGG 0.512441 5_1:+68046045 None:intergenic
ATTCAAGATACGCTCAAAGT+TGG 0.514187 5_1:-68042487 Msa0746040:CDS
CTACAACGTTCACAGAAGAT+TGG 0.516743 5_1:-68045902 Msa0746040:CDS
ACCAACTCCGATTGCTCCGA+CGG 0.521741 5_1:+68045057 None:intergenic
TGTAACAGCCCTGTGGCCAC+CGG 0.524138 5_1:+68045093 None:intergenic
GGAGGGATGAGTACTTTGAC+AGG 0.524697 5_1:-68044982 Msa0746040:CDS
GCTATCCCAGCAACCTTAAG+TGG 0.526924 5_1:+68042460 None:intergenic
CCTCTTCTTCTTATGATCCC+AGG 0.527608 5_1:-68042592 Msa0746040:CDS
AACAATAGCGCTGGATTCAA+CGG 0.528207 5_1:+68045189 None:intergenic
AGTAACAAAATTAGGTTCCA+AGG 0.528587 5_1:+68042835 None:intergenic
CACAGATGACATTCCCGGAT+GGG 0.530635 5_1:-68043156 Msa0746040:CDS
CCCTAGCTGAGCCCTTCCTT+AGG 0.531630 5_1:+68044812 None:intergenic
ATGAGTACTTTGACAGGGAC+AGG 0.531696 5_1:-68044976 Msa0746040:CDS
TTCTATGGAGTGGTAGAAGT+GGG 0.531994 5_1:+68046250 None:intergenic
ACCTAAGGAAGGGCTCAGCT+AGG 0.534237 5_1:-68044813 Msa0746040:CDS
TTCCATCACCAACAAGGCCA+TGG 0.535039 5_1:+68043123 None:intergenic
TTACTAGGCAAAGGAGGAGG+GGG 0.535083 5_1:-68041388 Msa0746040:three_prime_UTR
AGCTGCCGTGATGTTGATGC+CGG 0.539745 5_1:-68045112 Msa0746040:CDS
TCATATTATGGATGACAAGA+AGG 0.542160 5_1:-68043181 Msa0746040:CDS
TGGCCACAGGGCTGTTACAG+CGG 0.542397 5_1:-68045089 Msa0746040:CDS
AGGGTGAGAAGCTAATGGAT+TGG 0.543793 5_1:-68042876 Msa0746040:CDS
GTATATATGTAGATATTACT+AGG 0.544182 5_1:-68041403 Msa0746040:three_prime_UTR
CAGTAGAGCGGTGGTTCTAA+CGG 0.547575 5_1:-68045025 Msa0746040:CDS
GAATGAAACTTCCCAAAACA+AGG 0.552593 5_1:+68045944 None:intergenic
TTGGAACAAATGGTGTCCAA+TGG 0.555718 5_1:-68041722 Msa0746040:CDS
AACAAAGAGACAGATGAAAA+GGG 0.558930 5_1:+68046152 None:intergenic
ATGAATGCAAGAAATTACCT+TGG 0.560679 5_1:-68042852 Msa0746040:CDS
TGTTGATGCCGGTGGCCACA+GGG 0.561507 5_1:-68045101 Msa0746040:CDS
AGACCCAATAACAATAGCGC+TGG 0.562343 5_1:+68045180 None:intergenic
ATTACTAGGCAAAGGAGGAG+GGG 0.565907 5_1:-68041389 Msa0746040:three_prime_UTR
TGCTTGATTTACCTAAGGAA+GGG 0.566581 5_1:-68044823 Msa0746040:CDS
ATTTGATATTGATTGGAATG+TGG 0.568501 5_1:-68044948 Msa0746040:CDS
CAAAAGCAACTACATTTGAG+GGG 0.572652 5_1:+68042527 None:intergenic
CAGATGAAAAGGGACAATAA+AGG 0.573040 5_1:+68046162 None:intergenic
AAGAGGGAATTAGAAGCTCT+AGG 0.573141 5_1:-68044757 Msa0746040:intron
CGTCATTCTTTGTGAGCATG+TGG 0.577614 5_1:-68045149 Msa0746040:CDS
GTGAACGTTGTAGCGTTCAA+CGG 0.578386 5_1:+68045912 None:intergenic
GCTGATGGAGTTCAATCTAG+TGG 0.579028 5_1:-68042793 Msa0746040:CDS
ACAGATGACATTCCCGGATG+GGG 0.580025 5_1:-68043155 Msa0746040:CDS
AGGTGACATCAGTGTTCTGT+GGG 0.581688 5_1:-68045215 Msa0746040:CDS
CCTAAGGAAGGGCTCAGCTA+GGG 0.582022 5_1:-68044812 Msa0746040:CDS
AATATTAAAACTTACGGTCA+AGG 0.583731 5_1:+68045879 None:intergenic
CAGAAGCAATTCCAAAGAGA+GGG 0.586284 5_1:+68046007 None:intergenic
CACTTCTATATCATATAGCT+AGG 0.587296 5_1:-68042630 Msa0746040:CDS
TTTGATAATATAGGTTATGG+TGG 0.589723 5_1:-68042935 Msa0746040:intron
CCTGGGATCATAAGAAGAAG+AGG 0.590839 5_1:+68042592 None:intergenic
AACAGGAAGTGGTAAAGCAG+AGG 0.593621 5_1:+68046056 None:intergenic
AACCAATAAGTTTCAACACA+TGG 0.595683 5_1:-68044903 Msa0746040:CDS
CTAGCTATATGATATAGAAG+TGG 0.598049 5_1:+68042631 None:intergenic
ACCGTCGGAGCAATCGGAGT+TGG 0.598580 5_1:-68045058 Msa0746040:CDS
AATACCAAACAGAAAACAAG+AGG 0.598893 5_1:-68042896 Msa0746040:CDS
GCAGAAGCAATTCCAAAGAG+AGG 0.598997 5_1:+68046006 None:intergenic
ACAGCGGCTGCCACCACCGT+CGG 0.600123 5_1:-68045073 Msa0746040:CDS
ATTCAGTAGCAATTGCTCCT+GGG 0.601962 5_1:+68042575 None:intergenic
TAGCTATATGATATAGAAGT+GGG 0.604968 5_1:+68042632 None:intergenic
GAGTAAAGGACACTTGAAGA+GGG 0.605380 5_1:-68044773 Msa0746040:CDS
TGAGTAAAGGACACTTGAAG+AGG 0.607837 5_1:-68044774 Msa0746040:CDS
TGCCGTGATGTTGATGCCGG+TGG 0.610921 5_1:-68045109 Msa0746040:CDS
TTGCTTTGTGTTCTATGGAG+TGG 0.611142 5_1:+68046240 None:intergenic
AAGGTGACATCAGTGTTCTG+TGG 0.613487 5_1:-68045216 Msa0746040:CDS
CAACATCAACCTCAACCTGA+AGG 0.615326 5_1:-68046274 Msa0746040:CDS
TGGGATAATAAGTGTAGCAG+TGG 0.618230 5_1:+68042651 None:intergenic
TAGATATTACTAGGCAAAGG+AGG 0.621362 5_1:-68041394 Msa0746040:three_prime_UTR
ATGTAGATATTACTAGGCAA+AGG 0.622181 5_1:-68041397 Msa0746040:three_prime_UTR
TCACAGATGACATTCCCGGA+TGG 0.624095 5_1:-68043157 Msa0746040:CDS
CTACTTATAAGACTAACTGC+AGG 0.624428 5_1:+68042706 None:intergenic
AAGAGAGGGAACAGAAACAG+AGG 0.638570 5_1:+68046021 None:intergenic
AGAAATCAATTTGTCAACCA+CGG 0.638750 5_1:+68041681 None:intergenic
TTTATGCCGTGCCAATTGGA+GGG 0.639992 5_1:-68044999 Msa0746040:CDS
CAGCCGCTGTAACAGCCCTG+TGG 0.640090 5_1:+68045086 None:intergenic
TGATTGTTAAGGTTGAGTGT+TGG 0.642833 5_1:+68046392 None:intergenic
GTTCTATGGAGTGGTAGAAG+TGG 0.645537 5_1:+68046249 None:intergenic
ACTCATCCCTCCAATTGGCA+CGG 0.646058 5_1:+68044993 None:intergenic
GGCCACCGGCATCAACATCA+CGG 0.647085 5_1:+68045107 None:intergenic
TAGAGCGGTGGTTCTAACGG+TGG 0.651368 5_1:-68045022 Msa0746040:CDS
AAAAGCAACTACATTTGAGG+GGG 0.652988 5_1:+68042528 None:intergenic
GAATAAGTTCAGTAGAGCGG+TGG 0.658888 5_1:-68045034 Msa0746040:CDS
TCTATGGAGTGGTAGAAGTG+GGG 0.659872 5_1:+68046251 None:intergenic
TGACACTTCCATCACCAACA+AGG 0.662968 5_1:+68043117 None:intergenic
CCGTAAAACATAGAAAGGCA+CGG 0.672086 5_1:+68041202 None:intergenic
AATGAAACTTCCCAAAACAA+GGG 0.680887 5_1:+68045945 None:intergenic
GAGGGATGAGTACTTTGACA+GGG 0.684482 5_1:-68044981 Msa0746040:CDS
GTCCATGTAAGAATGAGCAA+CGG 0.693112 5_1:+68045978 None:intergenic
CATGCTCACAAAGAATGACG+TGG 0.694517 5_1:+68045152 None:intergenic
GGTGAATAAGTTCAGTAGAG+CGG 0.695026 5_1:-68045037 Msa0746040:CDS
TGCCAAACAAAATCTCTCCG+TGG 0.711262 5_1:-68041698 Msa0746040:CDS
ATACCAAACAGAAAACAAGA+GGG 0.731604 5_1:-68042895 Msa0746040:CDS
GAGCATGTGGATGCACAACG+TGG 0.798016 5_1:-68045136 Msa0746040:CDS
GGTGACATCAGTGTTCTGTG+GGG 0.814024 5_1:-68045214 Msa0746040:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! TAAACTAATATTAAAACTTA+CGG + chr5_1:68041676-68041695 None:intergenic 10.0%
!!! TTTATCTTTATATGATTTTT+AGG - chr5_1:68042914-68042933 Msa0746040:CDS 10.0%
!!! TCATTCATATATAATTTTCT+TGG + chr5_1:68042093-68042112 None:intergenic 15.0%
!!! TATATTTTTGAATGATTAGA+AGG - chr5_1:68042184-68042203 Msa0746040:intron 15.0%
!! TGATAAAAAAATATAGTCAA+TGG + chr5_1:68043305-68043324 None:intergenic 15.0%
!! ATTAAAATTTAACTATGCTT+AGG + chr5_1:68043416-68043435 None:intergenic 15.0%
!!! AAGAGTAAATTTTAGAATAT+TGG + chr5_1:68043506-68043525 None:intergenic 15.0%
!!! GTTTTTTTGACAAAAAAAAT+TGG + chr5_1:68043818-68043837 None:intergenic 15.0%
!!! TAAGAAAAGTGTATAAATAA+AGG - chr5_1:68043943-68043962 Msa0746040:intron 15.0%
!!! AAGAAAAGTGTATAAATAAA+GGG - chr5_1:68043944-68043963 Msa0746040:intron 15.0%
!! TATTTAGTGTTATATTGTAT+TGG - chr5_1:68044008-68044027 Msa0746040:intron 15.0%
!! ATTTAGTGTTATATTGTATT+GGG - chr5_1:68044009-68044028 Msa0746040:intron 15.0%
!!! TTTATTGATAATTCTGTAAT+TGG - chr5_1:68044165-68044184 Msa0746040:intron 15.0%
!!! TTTGTCATTTTTGATAATAT+AGG - chr5_1:68044602-68044621 Msa0746040:intron 15.0%
!!! ATTTTTGATAATATAGGTTA+TGG - chr5_1:68044608-68044627 Msa0746040:intron 15.0%
!!! TTGATATTTCTAATTAAACT+AGG + chr5_1:68045325-68045344 None:intergenic 15.0%
!!! ATTTTACTTGAATTTGAATT+TGG - chr5_1:68045392-68045411 Msa0746040:intron 15.0%
!!! TTTTACTTGAATTTGAATTT+GGG - chr5_1:68045393-68045412 Msa0746040:intron 15.0%
!! CAAAAATCAATATTATTACA+AGG + chr5_1:68046380-68046399 None:intergenic 15.0%
!! TCAATAAATAAAATTTCGAC+AGG + chr5_1:68041793-68041812 None:intergenic 20.0%
!! TTTATTGATATGAAATCGTT+TGG - chr5_1:68041805-68041824 Msa0746040:intron 20.0%
!! TGAATACTTGATTAAAAGTT+TGG + chr5_1:68041853-68041872 None:intergenic 20.0%
!!! TTGTTTTTCTTATATGCTTT+TGG - chr5_1:68042691-68042710 Msa0746040:CDS 20.0%
!!! AATTTAAAATGGGAACAAAT+GGG + chr5_1:68043230-68043249 None:intergenic 20.0%
!!! AAATTTAAAATGGGAACAAA+TGG + chr5_1:68043231-68043250 None:intergenic 20.0%
!!! CATTTTATATAGACACTAAT+GGG + chr5_1:68043353-68043372 None:intergenic 20.0%
!!! ACATTTTATATAGACACTAA+TGG + chr5_1:68043354-68043373 None:intergenic 20.0%
!! CTAAAAACATGACTAATATA+TGG - chr5_1:68043450-68043469 Msa0746040:intron 20.0%
!!! AGAAAAGTGTATAAATAAAG+GGG - chr5_1:68043945-68043964 Msa0746040:intron 20.0%
!! TAAGTGGAATATATTGTATT+GGG - chr5_1:68043968-68043987 Msa0746040:intron 20.0%
!! AGTTGTATTGAAAATTGAAA+TGG - chr5_1:68044041-68044060 Msa0746040:intron 20.0%
!! GTTGTATTGAAAATTGAAAT+GGG - chr5_1:68044042-68044061 Msa0746040:intron 20.0%
!!! GACACTTTTTTTTAGAAAAT+GGG - chr5_1:68044078-68044097 Msa0746040:intron 20.0%
!!! CAATGCAAAATTTCTTTTTT+TGG + chr5_1:68045544-68045563 None:intergenic 20.0%
!!! CAAAAAAAGAAATTTTGCAT+TGG - chr5_1:68045542-68045561 Msa0746040:intron 20.0%
!! AAAAATTTGACTCAAAAGTA+TGG + chr5_1:68045717-68045736 None:intergenic 20.0%
!! CATTTATGATTGAAAATTTG+AGG - chr5_1:68045929-68045948 Msa0746040:CDS 20.0%
!! GTATATATGTAGATATTACT+AGG - chr5_1:68046143-68046162 Msa0746040:CDS 20.0%
! TTGGATAGAAAAAAGGAATT+GGG + chr5_1:68041210-68041229 None:intergenic 25.0%
! TTTGGATAGAAAAAAGGAAT+TGG + chr5_1:68041211-68041230 None:intergenic 25.0%
!!! TGTCATTTTGGATAGAAAAA+AGG + chr5_1:68041217-68041236 None:intergenic 25.0%
!!! TTTTTTCTATCCAAAATGAC+AGG - chr5_1:68041216-68041235 Msa0746040:three_prime_UTR 25.0%
! AAGAACATAGAAATTGTTGA+AGG + chr5_1:68041358-68041377 None:intergenic 25.0%
! AACAATTTCTATGTTCTTCT+TGG - chr5_1:68041360-68041379 Msa0746040:three_prime_UTR 25.0%
! AATATTAAAACTTACGGTCA+AGG + chr5_1:68041670-68041689 None:intergenic 25.0%
!!! ATTCATTTTTAACCTCTCTA+TGG - chr5_1:68041877-68041896 Msa0746040:intron 25.0%
! GTATTGGATATGAAGAATTA+TGG - chr5_1:68041901-68041920 Msa0746040:intron 25.0%
! TATGAAGAATTATGGAATGT+TGG - chr5_1:68041909-68041928 Msa0746040:intron 25.0%
! AAAAGACCAAAAACTCAATT+TGG + chr5_1:68042116-68042135 None:intergenic 25.0%
!!! TTTTTTTTATCCATTGATCG+TGG - chr5_1:68042133-68042152 Msa0746040:intron 25.0%
!!! CAGAGTTTATTTATTTTGTG+AGG - chr5_1:68042208-68042227 Msa0746040:intron 25.0%
!!! AGTTTATTTATTTTGTGAGG+TGG - chr5_1:68042211-68042230 Msa0746040:intron 25.0%
!!! GTTTATTTATTTTGTGAGGT+GGG - chr5_1:68042212-68042231 Msa0746040:intron 25.0%
! AAATGATATATATTTCCGAC+CGG - chr5_1:68042273-68042292 Msa0746040:intron 25.0%
! GGTGTAAATTTGATATTGAT+TGG - chr5_1:68042591-68042610 Msa0746040:CDS 25.0%
!! ATTTGATATTGATTGGAATG+TGG - chr5_1:68042598-68042617 Msa0746040:CDS 25.0%
!!! TATCCTTCTTTTTCACATTA+TGG - chr5_1:68042838-68042857 Msa0746040:CDS 25.0%
!!! ATCCTTCTTTTTCACATTAT+GGG - chr5_1:68042839-68042858 Msa0746040:CDS 25.0%
! GTGGCAATAAATCAATAATA+AGG + chr5_1:68043110-68043129 None:intergenic 25.0%
!!! ATTATTGATTTATTGCCACA+TGG - chr5_1:68043111-68043130 Msa0746040:intron 25.0%
!! ATTTAAAATGGGAACAAATG+GGG + chr5_1:68043229-68043248 None:intergenic 25.0%
! AGATAGATTTACTCATTTAC+AGG + chr5_1:68043382-68043401 None:intergenic 25.0%
! AAGAAAAGAAACAAAAGAAG+TGG - chr5_1:68043591-68043610 Msa0746040:intron 25.0%
! ACAATGAATACAATCTATCT+TGG - chr5_1:68043683-68043702 Msa0746040:intron 25.0%
! ATTGCAACAAGAACAAAATT+AGG + chr5_1:68043759-68043778 None:intergenic 25.0%
! AATATTTCATCAAACTCATG+TGG - chr5_1:68043781-68043800 Msa0746040:intron 25.0%
!! TGACAAAAAAAATTGGTAAC+AGG + chr5_1:68043811-68043830 None:intergenic 25.0%
! GTAAGTGGAATATATTGTAT+TGG - chr5_1:68043967-68043986 Msa0746040:intron 25.0%
!!! GGACACTTTTTTTTAGAAAA+TGG - chr5_1:68044077-68044096 Msa0746040:intron 25.0%
! TACTGCTTTAATTAATACGT+TGG + chr5_1:68044323-68044342 None:intergenic 25.0%
! AATTGATTGTTCACTATGAT+TGG + chr5_1:68044578-68044597 None:intergenic 25.0%
!! TTTGATAATATAGGTTATGG+TGG - chr5_1:68044611-68044630 Msa0746040:intron 25.0%
! TAGCTATATGATATAGAAGT+GGG + chr5_1:68044917-68044936 None:intergenic 25.0%
! CTATTAAGAACTTAACAAAG+TGG - chr5_1:68045288-68045307 Msa0746040:intron 25.0%
! TGCCCAAATTGTATAAAAAA+AGG - chr5_1:68045477-68045496 Msa0746040:intron 25.0%
! GCCCAAATTGTATAAAAAAA+GGG - chr5_1:68045478-68045497 Msa0746040:intron 25.0%
!!! CCCCTTTTTTTATACAATTT+GGG + chr5_1:68045482-68045501 None:intergenic 25.0%
! CCCAAATTGTATAAAAAAAG+GGG - chr5_1:68045479-68045498 Msa0746040:intron 25.0%
!!! ACCCCTTTTTTTATACAATT+TGG + chr5_1:68045483-68045502 None:intergenic 25.0%
! AAATGTTAACTTATGTCCTA+AGG + chr5_1:68045651-68045670 None:intergenic 25.0%
!!! GTTCAATACTCACTTTTTTT+AGG + chr5_1:68045675-68045694 None:intergenic 25.0%
! AAAATCACTCTGATTGAAAA+AGG - chr5_1:68045760-68045779 Msa0746040:intron 25.0%
!! CAAAAATTTATTAAGCATCG+TGG + chr5_1:68045905-68045924 None:intergenic 25.0%
!! CACGATGCTTAATAAATTTT+TGG - chr5_1:68045903-68045922 Msa0746040:CDS 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG + chr5_1:68046115-68046134 None:intergenic 25.0%
! CATTCAATAAATGATGTATG+TGG - chr5_1:68046041-68046060 Msa0746040:CDS 25.0%
!! TTTTTGCTTATATTTGTGAC+CGG - chr5_1:68046115-68046134 Msa0746040:CDS 25.0%
!! TGTTTTCCTATAGTTATTGA+AGG - chr5_1:68046268-68046287 Msa0746040:CDS 25.0%
!!! TGATTGTGTGTTTCTTTTTT+CGG - chr5_1:68046296-68046315 Msa0746040:CDS 25.0%
GAGAAGAAGAATGATTGTTA+AGG + chr5_1:68041168-68041187 None:intergenic 30.0%
TAGAAAAAAGGAATTGGGTA+AGG + chr5_1:68041205-68041224 None:intergenic 30.0%
! AAAAAGGATTTGAGGTTGAA+AGG + chr5_1:68041333-68041352 None:intergenic 30.0%
GAAATTGTTGAAGGTGAAAA+AGG + chr5_1:68041349-68041368 None:intergenic 30.0%
AACAAAGAGACAGATGAAAA+GGG + chr5_1:68041397-68041416 None:intergenic 30.0%
TAACAAAGAGACAGATGAAA+AGG + chr5_1:68041398-68041417 None:intergenic 30.0%
AATGAAACTTCCCAAAACAA+GGG + chr5_1:68041604-68041623 None:intergenic 30.0%
TTGATATGAAATCGTTTGGT+CGG - chr5_1:68041809-68041828 Msa0746040:intron 30.0%
ATTGAGTCGTAAGAAAATTG+TGG + chr5_1:68041967-68041986 None:intergenic 30.0%
! GAATGACCAAATTGAGTTTT+TGG - chr5_1:68042107-68042126 Msa0746040:intron 30.0%
AATGATATATATTTCCGACC+GGG - chr5_1:68042274-68042293 Msa0746040:intron 30.0%
GTGAATGATATGATGTTTGA+AGG - chr5_1:68042311-68042330 Msa0746040:intron 30.0%
AACCAATAAGTTTCAACACA+TGG - chr5_1:68042643-68042662 Msa0746040:CDS 30.0%
AACCATGTGTTGAAACTTAT+TGG + chr5_1:68042648-68042667 None:intergenic 30.0%
ATAAGAAAAACAATCGCTAC+CGG + chr5_1:68042684-68042703 None:intergenic 30.0%
AAGTGTCCTTTACTCAAATA+AGG + chr5_1:68042768-68042787 None:intergenic 30.0%
TTCCCATAATGTGAAAAAGA+AGG + chr5_1:68042844-68042863 None:intergenic 30.0%
GTTATCTTTGTGATGAATAG+AGG - chr5_1:68043072-68043091 Msa0746040:intron 30.0%
ATTAACCAAATCATATGGCA+GGG + chr5_1:68043561-68043580 None:intergenic 30.0%
AATTAACCAAATCATATGGC+AGG + chr5_1:68043562-68043581 None:intergenic 30.0%
GCACAATTAACCAAATCATA+TGG + chr5_1:68043566-68043585 None:intergenic 30.0%
ATGCAGTTAGCAATTTCAAT+GGG + chr5_1:68043656-68043675 None:intergenic 30.0%
TGTATAAATAAAGGGGTAAG+TGG - chr5_1:68043952-68043971 Msa0746040:intron 30.0%
!! AAAAAGTGTCCCAAAATAAC+TGG + chr5_1:68044068-68044087 None:intergenic 30.0%
CAATAAAGCAGCTTCATTAT+TGG + chr5_1:68044152-68044171 None:intergenic 30.0%
!!! TTCTGTAATTGGTTTTTTGC+AGG - chr5_1:68044176-68044195 Msa0746040:intron 30.0%
!!! AAAATGGTGCTATCTGTTTT+TGG - chr5_1:68044218-68044237 Msa0746040:intron 30.0%
!!! AAATGGTGCTATCTGTTTTT+GGG - chr5_1:68044219-68044238 Msa0746040:intron 30.0%
TCATATTATGGATGACAAGA+AGG - chr5_1:68044365-68044384 Msa0746040:intron 30.0%
ACATGACACTAACATGATAT+TGG + chr5_1:68044519-68044538 None:intergenic 30.0%
AATACCAAACAGAAAACAAG+AGG - chr5_1:68044650-68044669 Msa0746040:intron 30.0%
ATACCAAACAGAAAACAAGA+GGG - chr5_1:68044651-68044670 Msa0746040:intron 30.0%
ATGAATGCAAGAAATTACCT+TGG - chr5_1:68044694-68044713 Msa0746040:intron 30.0%
AGTAACAAAATTAGGTTCCA+AGG + chr5_1:68044714-68044733 None:intergenic 30.0%
! TGGAACCTAATTTTGTTACT+TGG - chr5_1:68044714-68044733 Msa0746040:intron 30.0%
CTAGCTATATGATATAGAAG+TGG + chr5_1:68044918-68044937 None:intergenic 30.0%
CACTTCTATATCATATAGCT+AGG - chr5_1:68044916-68044935 Msa0746040:CDS 30.0%
GCAAATAATTTACCTAGAGA+TGG + chr5_1:68045131-68045150 None:intergenic 30.0%
ATTGTGTGTCTGAATTTCAT+TGG - chr5_1:68045424-68045443 Msa0746040:intron 30.0%
CTTCTATAACTCACTTGTAA+GGG + chr5_1:68045457-68045476 None:intergenic 30.0%
ACTTCTATAACTCACTTGTA+AGG + chr5_1:68045458-68045477 None:intergenic 30.0%
!!! GCTTTTGTTTTTGGAACAAA+TGG - chr5_1:68045814-68045833 Msa0746040:intron 30.0%
AGAAATCAATTTGTCAACCA+CGG + chr5_1:68045868-68045887 None:intergenic 30.0%
!!! TTTTGGTTTTTGAGGTAAGA+AGG + chr5_1:68045962-68045981 None:intergenic 30.0%
TTACCTCAAAAACCAAAATG+TGG - chr5_1:68045964-68045983 Msa0746040:CDS 30.0%
!!! TATCCACATTTTGGTTTTTG+AGG + chr5_1:68045970-68045989 None:intergenic 30.0%
GATGTATGTTGTCTACAATA+AGG + chr5_1:68046068-68046087 None:intergenic 30.0%
ATGTAGATATTACTAGGCAA+AGG - chr5_1:68046149-68046168 Msa0746040:CDS 30.0%
ACTCTTCCTTCAATAACTAT+AGG + chr5_1:68046277-68046296 None:intergenic 30.0%
!!! GATTGTGTGTTTCTTTTTTC+GGG - chr5_1:68046297-68046316 Msa0746040:CDS 30.0%
ACAAACCGTAAAACATAGAA+AGG + chr5_1:68046352-68046371 None:intergenic 30.0%
TGATTGTTAAGGTTGAGTGT+TGG + chr5_1:68041157-68041176 None:intergenic 35.0%
AAGGATTGCTTTGTGTTCTA+TGG + chr5_1:68041314-68041333 None:intergenic 35.0%
TGAAGGTGAAAAAGGATTTG+AGG + chr5_1:68041341-68041360 None:intergenic 35.0%
CAGATGAAAAGGGACAATAA+AGG + chr5_1:68041387-68041406 None:intergenic 35.0%
! ATGTTACGGCTATTGTTGTT+GGG + chr5_1:68041432-68041451 None:intergenic 35.0%
CAATAACAGCAAGCATGTTA+CGG + chr5_1:68041446-68041465 None:intergenic 35.0%
! TTATTGCTTGGGTTTTCAGT+TGG - chr5_1:68041460-68041479 Msa0746040:intron 35.0%
!!! GATGTCATTACCCTTGTTTT+GGG - chr5_1:68041591-68041610 Msa0746040:three_prime_UTR 35.0%
GAATGAAACTTCCCAAAACA+AGG + chr5_1:68041605-68041624 None:intergenic 35.0%
TATGAACATGAACAACACGA+TGG - chr5_1:68041766-68041785 Msa0746040:intron 35.0%
TTAACCTCTCTATGGAGTAT+TGG - chr5_1:68041885-68041904 Msa0746040:intron 35.0%
ATATCCAATACTCCATAGAG+AGG + chr5_1:68041892-68041911 None:intergenic 35.0%
! TTTTTATCCATTGATCGTGG+AGG - chr5_1:68042136-68042155 Msa0746040:intron 35.0%
! TTTTATCCATTGATCGTGGA+GGG - chr5_1:68042137-68042156 Msa0746040:intron 35.0%
ATGATATATATTTCCGACCG+GGG - chr5_1:68042275-68042294 Msa0746040:intron 35.0%
! AATCCAGCGCTATTGTTATT+GGG - chr5_1:68042363-68042382 Msa0746040:intron 35.0%
!!! AAACTTATTGGTTTTGCACC+AGG + chr5_1:68042636-68042655 None:intergenic 35.0%
!! ATGGTTCTTCTTTGCTTTTC+CGG - chr5_1:68042662-68042681 Msa0746040:CDS 35.0%
TTCTCTGCTTGATTTACCTA+AGG - chr5_1:68042718-68042737 Msa0746040:CDS 35.0%
TGCTTGATTTACCTAAGGAA+GGG - chr5_1:68042723-68042742 Msa0746040:CDS 35.0%
! CTCTCTCCTTATTTGAGTAA+AGG - chr5_1:68042759-68042778 Msa0746040:CDS 35.0%
AGTTCATTTAGCATAGTGTC+CGG - chr5_1:68043527-68043546 Msa0746040:intron 35.0%
GATGCAGTTAGCAATTTCAA+TGG + chr5_1:68043657-68043676 None:intergenic 35.0%
CAAAGTAGGTCAATTATACC+GGG + chr5_1:68043908-68043927 None:intergenic 35.0%
CCAAAGTAGGTCAATTATAC+CGG + chr5_1:68043909-68043928 None:intergenic 35.0%
TCTGTGTGAAAAACCAAAGT+AGG + chr5_1:68043922-68043941 None:intergenic 35.0%
! TTGAAATGGGCCAGTTATTT+TGG - chr5_1:68044055-68044074 Msa0746040:intron 35.0%
!! TGAAATGGGCCAGTTATTTT+GGG - chr5_1:68044056-68044075 Msa0746040:intron 35.0%
AGAAAATGGGTCAGTTATTC+CGG - chr5_1:68044091-68044110 Msa0746040:intron 35.0%
! ATTTTCTCTGCGAAAGACAT+GGG + chr5_1:68044203-68044222 None:intergenic 35.0%
!!! AATGGTGCTATCTGTTTTTG+GGG - chr5_1:68044220-68044239 Msa0746040:intron 35.0%
TGCAGTTGCTGATCATATTA+TGG - chr5_1:68044353-68044372 Msa0746040:intron 35.0%
CAGCTCCAAGTAACAAAATT+AGG + chr5_1:68044722-68044741 None:intergenic 35.0%
!! CTAATTTTGTTACTTGGAGC+TGG - chr5_1:68044720-68044739 Msa0746040:intron 35.0%
CTTAGAAGATGCTCCATATT+TGG - chr5_1:68044809-68044828 Msa0746040:CDS 35.0%
CTACTTATAAGACTAACTGC+AGG + chr5_1:68044843-68044862 None:intergenic 35.0%
AAAAGCAACTACATTTGAGG+GGG + chr5_1:68045021-68045040 None:intergenic 35.0%
CAAAAGCAACTACATTTGAG+GGG + chr5_1:68045022-68045041 None:intergenic 35.0%
GCAAAAGCAACTACATTTGA+GGG + chr5_1:68045023-68045042 None:intergenic 35.0%
AGCAAAAGCAACTACATTTG+AGG + chr5_1:68045024-68045043 None:intergenic 35.0%
!!! AATGTAGTTGCTTTTGCTAC+TGG - chr5_1:68045026-68045045 Msa0746040:CDS 35.0%
ATTCAAGATACGCTCAAAGT+TGG - chr5_1:68045059-68045078 Msa0746040:CDS 35.0%
! TCAGTTTTTATGCCATCTCT+AGG - chr5_1:68045116-68045135 Msa0746040:CDS 35.0%
AAATTCAGACACACAATTGC+GGG + chr5_1:68045421-68045440 None:intergenic 35.0%
GAAATTCAGACACACAATTG+CGG + chr5_1:68045422-68045441 None:intergenic 35.0%
!! TCATGTTAATTTGTGCCCTT+AGG - chr5_1:68045502-68045521 Msa0746040:intron 35.0%
!! CATGTTAATTTGTGCCCTTA+GGG - chr5_1:68045503-68045522 Msa0746040:intron 35.0%
TTCTTTAACATGTGCCCTAA+GGG + chr5_1:68045520-68045539 None:intergenic 35.0%
ATTCTTTAACATGTGCCCTA+AGG + chr5_1:68045521-68045540 None:intergenic 35.0%
! GGATTCTGATGTCATACTTT+TGG - chr5_1:68045781-68045800 Msa0746040:intron 35.0%
!! AGATTTTGTTTGGCATCCAT+TGG + chr5_1:68045843-68045862 None:intergenic 35.0%
! TGTATTGGGTATCCACATTT+TGG + chr5_1:68045979-68045998 None:intergenic 35.0%
ATCTACATATATACACCCTC+CGG + chr5_1:68046137-68046156 None:intergenic 35.0%
TAGATATTACTAGGCAAAGG+AGG - chr5_1:68046152-68046171 Msa0746040:CDS 35.0%
!! ACTGTGTTCTCCTGTCATTT+TGG + chr5_1:68041229-68041248 None:intergenic 40.0%
!! GAGGTTGATGTTGGATTCAT+CGG + chr5_1:68041265-68041284 None:intergenic 40.0%
TTCTATGGAGTGGTAGAAGT+GGG + chr5_1:68041299-68041318 None:intergenic 40.0%
TTGCTTTGTGTTCTATGGAG+TGG + chr5_1:68041309-68041328 None:intergenic 40.0%
CATGTTACGGCTATTGTTGT+TGG + chr5_1:68041433-68041452 None:intergenic 40.0%
!! ACATGCTTGCTGTTATTGCT+TGG - chr5_1:68041448-68041467 Msa0746040:intron 40.0%
!! CATGCTTGCTGTTATTGCTT+GGG - chr5_1:68041449-68041468 Msa0746040:intron 40.0%
CACATAGAAGTAACAGGAAG+TGG + chr5_1:68041504-68041523 None:intergenic 40.0%
AGAGGACACATAGAAGTAAC+AGG + chr5_1:68041510-68041529 None:intergenic 40.0%
CAGAAGCAATTCCAAAGAGA+GGG + chr5_1:68041542-68041561 None:intergenic 40.0%
TACCGTTGCTCATTCTTACA+TGG - chr5_1:68041566-68041585 Msa0746040:intron 40.0%
GTCCATGTAAGAATGAGCAA+CGG + chr5_1:68041571-68041590 None:intergenic 40.0%
!! CGATGTCATTACCCTTGTTT+TGG - chr5_1:68041590-68041609 Msa0746040:three_prime_UTR 40.0%
CTACAACGTTCACAGAAGAT+TGG - chr5_1:68041644-68041663 Msa0746040:three_prime_UTR 40.0%
TCACAACCAATCATAAACCC+CGG + chr5_1:68042295-68042314 None:intergenic 40.0%
! AACAATAGCGCTGGATTCAA+CGG + chr5_1:68042360-68042379 None:intergenic 40.0%
GAATCCAGCGCTATTGTTAT+TGG - chr5_1:68042362-68042381 Msa0746040:intron 40.0%
GGTGAATAAGTTCAGTAGAG+CGG - chr5_1:68042509-68042528 Msa0746040:CDS 40.0%
! AAAGTACTCATCCCTCCAAT+TGG + chr5_1:68042561-68042580 None:intergenic 40.0%
CTGCTTGATTTACCTAAGGA+AGG - chr5_1:68042722-68042741 Msa0746040:CDS 40.0%
TGAGTAAAGGACACTTGAAG+AGG - chr5_1:68042772-68042791 Msa0746040:CDS 40.0%
GAGTAAAGGACACTTGAAGA+GGG - chr5_1:68042773-68042792 Msa0746040:CDS 40.0%
AAGAGGGAATTAGAAGCTCT+AGG - chr5_1:68042789-68042808 Msa0746040:CDS 40.0%
ATTTATTGCCACATGGCTCA+TGG - chr5_1:68043118-68043137 Msa0746040:CDS 40.0%
GATATTATCCATGAGCCATG+TGG + chr5_1:68043129-68043148 None:intergenic 40.0%
ATGACACATCCACATTGGAA+TGG + chr5_1:68043159-68043178 None:intergenic 40.0%
TCTCTCTCACTTTCAACCAA+TGG - chr5_1:68043178-68043197 Msa0746040:CDS 40.0%
CACTTTCAACCAATGGTACT+TGG - chr5_1:68043185-68043204 Msa0746040:CDS 40.0%
AATCATATGGCAGGGATAAC+AGG + chr5_1:68043553-68043572 None:intergenic 40.0%
GTTATCCCTGCCATATGATT+TGG - chr5_1:68043553-68043572 Msa0746040:intron 40.0%
TGTACCAGACTTGTGTGAAA+TGG - chr5_1:68043625-68043644 Msa0746040:intron 40.0%
CAATCCATTTCACACAAGTC+TGG + chr5_1:68043632-68043651 None:intergenic 40.0%
AATTTATACTACCTCCGTCC+CGG - chr5_1:68043887-68043906 Msa0746040:intron 40.0%
CCGGTATAATTGACCTACTT+TGG - chr5_1:68043906-68043925 Msa0746040:intron 40.0%
GAAAATGGGTCAGTTATTCC+GGG - chr5_1:68044092-68044111 Msa0746040:intron 40.0%
AGCAGCTTCATTATTGGTCA+AGG + chr5_1:68044146-68044165 None:intergenic 40.0%
! CATTTTCTCTGCGAAAGACA+TGG + chr5_1:68044204-68044223 None:intergenic 40.0%
CATGTCTTTCGCAGAGAAAA+TGG - chr5_1:68044202-68044221 Msa0746040:intron 40.0%
ATGGAAAAAAGTTCCCCATC+CGG + chr5_1:68044407-68044426 None:intergenic 40.0%
!!! ACTTTTTTCCATGGCCTTGT+TGG - chr5_1:68044415-68044434 Msa0746040:intron 40.0%
!!! TCACCCTCTTGTTTTCTGTT+TGG + chr5_1:68044657-68044676 None:intergenic 40.0%
TGGGATAATAAGTGTAGCAG+TGG + chr5_1:68044898-68044917 None:intergenic 40.0%
ATTCAGTAGCAATTGCTCCT+GGG + chr5_1:68044974-68044993 None:intergenic 40.0%
AATTCAGTAGCAATTGCTCC+TGG + chr5_1:68044975-68044994 None:intergenic 40.0%
TGGCATAAAAACTGAGAGCA+CGG + chr5_1:68045111-68045130 None:intergenic 40.0%
TTAACAAAGTGGCGTTCGTA+AGG - chr5_1:68045299-68045318 Msa0746040:intron 40.0%
GTTCCTTAACATGTGTCCTT+AGG - chr5_1:68045632-68045651 Msa0746040:intron 40.0%
TGTCCTAAGGACACATGTTA+AGG + chr5_1:68045638-68045657 None:intergenic 40.0%
!!! TGTCATACTTTTGGTGTTGC+AGG - chr5_1:68045790-68045809 Msa0746040:intron 40.0%
!!! GTTGCAGGTGCTTTTGTTTT+TGG - chr5_1:68045805-68045824 Msa0746040:intron 40.0%
TTGGAACAAATGGTGTCCAA+TGG - chr5_1:68045824-68045843 Msa0746040:intron 40.0%
! AACCACGGAGAGATTTTGTT+TGG + chr5_1:68045853-68045872 None:intergenic 40.0%
!!! GGTTTTTGAGGTAAGAAGGA+AGG + chr5_1:68045958-68045977 None:intergenic 40.0%
TGCTTATATTTGTGACCGGA+GGG + chr5_1:68046119-68046138 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG + chr5_1:68046118-68046137 None:intergenic 40.0%
TTGCTTATATTTGTGACCGG+AGG - chr5_1:68046118-68046137 Msa0746040:CDS 40.0%
TGCTTATATTTGTGACCGGA+GGG - chr5_1:68046119-68046138 Msa0746040:CDS 40.0%
ATATTACTAGGCAAAGGAGG+AGG - chr5_1:68046155-68046174 Msa0746040:CDS 40.0%
TATTACTAGGCAAAGGAGGA+GGG - chr5_1:68046156-68046175 Msa0746040:CDS 40.0%
CCGTAAAACATAGAAAGGCA+CGG + chr5_1:68046347-68046366 None:intergenic 40.0%
! CCGTGCCTTTCTATGTTTTA+CGG - chr5_1:68046344-68046363 Msa0746040:five_prime_UTR 40.0%
!! CTTCAGGTTGAGGTTGATGT+TGG + chr5_1:68041274-68041293 None:intergenic 45.0%
CAACATCAACCTCAACCTGA+AGG - chr5_1:68041272-68041291 Msa0746040:three_prime_UTR 45.0%
TCTATGGAGTGGTAGAAGTG+GGG + chr5_1:68041298-68041317 None:intergenic 45.0%
GTTCTATGGAGTGGTAGAAG+TGG + chr5_1:68041300-68041319 None:intergenic 45.0%
! TTGCTTGGGTTTTCAGTTGG+TGG - chr5_1:68041463-68041482 Msa0746040:intron 45.0%
! TGCTTGGGTTTTCAGTTGGT+GGG - chr5_1:68041464-68041483 Msa0746040:intron 45.0%
AACAGGAAGTGGTAAAGCAG+AGG + chr5_1:68041493-68041512 None:intergenic 45.0%
AAGAGAGGGAACAGAAACAG+AGG + chr5_1:68041528-68041547 None:intergenic 45.0%
!! CTGTTTCTGTTCCCTCTCTT+TGG - chr5_1:68041528-68041547 Msa0746040:intron 45.0%
GCAGAAGCAATTCCAAAGAG+AGG + chr5_1:68041543-68041562 None:intergenic 45.0%
GTGAACGTTGTAGCGTTCAA+CGG + chr5_1:68041637-68041656 None:intergenic 45.0%
AACCAATCATAAACCCCGGT+CGG + chr5_1:68042291-68042310 None:intergenic 45.0%
AAGGTGACATCAGTGTTCTG+TGG - chr5_1:68042330-68042349 Msa0746040:intron 45.0%
AGGTGACATCAGTGTTCTGT+GGG - chr5_1:68042331-68042350 Msa0746040:intron 45.0%
AGACCCAATAACAATAGCGC+TGG + chr5_1:68042369-68042388 None:intergenic 45.0%
CATGCTCACAAAGAATGACG+TGG + chr5_1:68042397-68042416 None:intergenic 45.0%
CGTCATTCTTTGTGAGCATG+TGG - chr5_1:68042397-68042416 Msa0746040:intron 45.0%
GAATAAGTTCAGTAGAGCGG+TGG - chr5_1:68042512-68042531 Msa0746040:CDS 45.0%
TTTATGCCGTGCCAATTGGA+GGG - chr5_1:68042547-68042566 Msa0746040:CDS 45.0%
GAGGGATGAGTACTTTGACA+GGG - chr5_1:68042565-68042584 Msa0746040:CDS 45.0%
ATGAGTACTTTGACAGGGAC+AGG - chr5_1:68042570-68042589 Msa0746040:CDS 45.0%
!! ATGTGGAAGAGTCTTGTTCC+TGG - chr5_1:68042615-68042634 Msa0746040:CDS 45.0%
GGCTCATGGATAATATCAGC+TGG - chr5_1:68043132-68043151 Msa0746040:CDS 45.0%
GAGAGATGACACATCCACAT+TGG + chr5_1:68043164-68043183 None:intergenic 45.0%
TTCGTAGGTCCAAGTACCAT+TGG + chr5_1:68043197-68043216 None:intergenic 45.0%
!! ATGGGGTCTATTGGTTTCGT+AGG + chr5_1:68043212-68043231 None:intergenic 45.0%
TGGGAACAAATGGGGTCTAT+TGG + chr5_1:68043221-68043240 None:intergenic 45.0%
GTAGGTCAATTATACCGGGA+CGG + chr5_1:68043904-68043923 None:intergenic 45.0%
AGGATCACAGATGACATTCC+CGG - chr5_1:68044385-68044404 Msa0746040:intron 45.0%
TGGAAAAAAGTTCCCCATCC+GGG + chr5_1:68044406-68044425 None:intergenic 45.0%
!!! GGATGGGGAACTTTTTTCCA+TGG - chr5_1:68044406-68044425 Msa0746040:intron 45.0%
TGACACTTCCATCACCAACA+AGG + chr5_1:68044432-68044451 None:intergenic 45.0%
ACAAGAGGGTGAGAAGCTAA+TGG - chr5_1:68044665-68044684 Msa0746040:intron 45.0%
! AGGGTGAGAAGCTAATGGAT+TGG - chr5_1:68044670-68044689 Msa0746040:intron 45.0%
!!! GCTGGTTTTGCTTTAGCTGA+TGG - chr5_1:68044738-68044757 Msa0746040:intron 45.0%
GCTGATGGAGTTCAATCTAG+TGG - chr5_1:68044753-68044772 Msa0746040:intron 45.0%
GCAGGAGCAATTGCCAAATA+TGG + chr5_1:68044825-68044844 None:intergenic 45.0%
CCTGGGATCATAAGAAGAAG+AGG + chr5_1:68044957-68044976 None:intergenic 45.0%
CCTCTTCTTCTTATGATCCC+AGG - chr5_1:68044954-68044973 Msa0746040:CDS 45.0%
! CAAAGTTGGTCTGCCACTTA+AGG - chr5_1:68045073-68045092 Msa0746040:CDS 45.0%
TGCCAAACAAAATCTCTCCG+TGG - chr5_1:68045848-68045867 Msa0746040:intron 45.0%
ATTACTAGGCAAAGGAGGAG+GGG - chr5_1:68046157-68046176 Msa0746040:CDS 45.0%
!!! CAATAATTTAAATTTAAAAT+GGG + chr5_1:68043240-68043259 None:intergenic 5.0%
!! TCAATAATTTAAATTTAAAA+TGG + chr5_1:68043241-68043260 None:intergenic 5.0%
!! CTTTAAATTAAAAAATTTAA+GGG + chr5_1:68045171-68045190 None:intergenic 5.0%
!! ACTTTAAATTAAAAAATTTA+AGG + chr5_1:68045172-68045191 None:intergenic 5.0%
CCTAATCCCTCCACGATCAA+TGG + chr5_1:68042146-68042165 None:intergenic 50.0%
CCATTGATCGTGGAGGGATT+AGG - chr5_1:68042143-68042162 Msa0746040:intron 50.0%
TTCCGACCGGGGTTTATGAT+TGG - chr5_1:68042286-68042305 Msa0746040:intron 50.0%
GGTGACATCAGTGTTCTGTG+GGG - chr5_1:68042332-68042351 Msa0746040:intron 50.0%
!! CAGTAGAGCGGTGGTTCTAA+CGG - chr5_1:68042521-68042540 Msa0746040:CDS 50.0%
GTGGTTTATGCCGTGCCAAT+TGG - chr5_1:68042543-68042562 Msa0746040:CDS 50.0%
GTTTATGCCGTGCCAATTGG+AGG - chr5_1:68042546-68042565 Msa0746040:CDS 50.0%
ACTCATCCCTCCAATTGGCA+CGG + chr5_1:68042556-68042575 None:intergenic 50.0%
GGAGGGATGAGTACTTTGAC+AGG - chr5_1:68042564-68042583 Msa0746040:CDS 50.0%
TCAGCTGGTCCATTCCAATG+TGG - chr5_1:68043147-68043166 Msa0746040:CDS 50.0%
ATATGGCAGGGATAACAGGC+CGG + chr5_1:68043549-68043568 None:intergenic 50.0%
ATGGGTCAGTTATTCCGGGA+CGG - chr5_1:68044096-68044115 Msa0746040:intron 50.0%
TCACAGATGACATTCCCGGA+TGG - chr5_1:68044389-68044408 Msa0746040:intron 50.0%
CACAGATGACATTCCCGGAT+GGG - chr5_1:68044390-68044409 Msa0746040:intron 50.0%
ACAGATGACATTCCCGGATG+GGG - chr5_1:68044391-68044410 Msa0746040:intron 50.0%
!! TTCCATGGCCTTGTTGGTGA+TGG - chr5_1:68044421-68044440 Msa0746040:intron 50.0%
TTCCATCACCAACAAGGCCA+TGG + chr5_1:68044426-68044445 None:intergenic 50.0%
ACATTTGAGGGGGTTGACGT+GGG + chr5_1:68045011-68045030 None:intergenic 50.0%
TACATTTGAGGGGGTTGACG+TGG + chr5_1:68045012-68045031 None:intergenic 50.0%
! GTCTGCCACTTAAGGTTGCT+GGG - chr5_1:68045081-68045100 Msa0746040:CDS 50.0%
GCTATCCCAGCAACCTTAAG+TGG + chr5_1:68045089-68045108 None:intergenic 50.0%
TGGATACCCAATACACCCTC+CGG - chr5_1:68045984-68046003 Msa0746040:CDS 50.0%
! TTGTGACCGGAGGGTGTATT+GGG + chr5_1:68045993-68046012 None:intergenic 50.0%
! TTTGTGACCGGAGGGTGTAT+TGG + chr5_1:68046127-68046146 None:intergenic 50.0%
TTACTAGGCAAAGGAGGAGG+GGG - chr5_1:68046158-68046177 Msa0746040:CDS 50.0%
GAGCATGTGGATGCACAACG+TGG - chr5_1:68042410-68042429 Msa0746040:intron 55.0%
AGCTGCCGTGATGTTGATGC+CGG - chr5_1:68042434-68042453 Msa0746040:CDS 55.0%
ACCAACTCCGATTGCTCCGA+CGG + chr5_1:68042492-68042511 None:intergenic 55.0%
!! TAGAGCGGTGGTTCTAACGG+TGG - chr5_1:68042524-68042543 Msa0746040:CDS 55.0%
ACCTAAGGAAGGGCTCAGCT+AGG - chr5_1:68042733-68042752 Msa0746040:CDS 55.0%
CCTAAGGAAGGGCTCAGCTA+GGG - chr5_1:68042734-68042753 Msa0746040:CDS 55.0%
GGTCAATTATACCGGGACGG+AGG + chr5_1:68043901-68043920 None:intergenic 55.0%
GTCAGTTATTCCGGGACGGA+GGG - chr5_1:68044100-68044119 Msa0746040:intron 55.0%
ACATACTACTCCCTCCGTCC+CGG + chr5_1:68044113-68044132 None:intergenic 55.0%
! GGTCTGCCACTTAAGGTTGC+TGG - chr5_1:68045080-68045099 Msa0746040:CDS 55.0%
!! GAAGTGGGGCCTTCAGGTTG+AGG + chr5_1:68041284-68041303 None:intergenic 60.0%
GTGGTAGAAGTGGGGCCTTC+AGG + chr5_1:68041290-68041309 None:intergenic 60.0%
TGCCGTGATGTTGATGCCGG+TGG - chr5_1:68042437-68042456 Msa0746040:CDS 60.0%
GGCCACCGGCATCAACATCA+CGG + chr5_1:68042442-68042461 None:intergenic 60.0%
ATGTTGATGCCGGTGGCCAC+AGG - chr5_1:68042444-68042463 Msa0746040:CDS 60.0%
TGTTGATGCCGGTGGCCACA+GGG - chr5_1:68042445-68042464 Msa0746040:CDS 60.0%
TGTAACAGCCCTGTGGCCAC+CGG + chr5_1:68042456-68042475 None:intergenic 60.0%
TGGCCACAGGGCTGTTACAG+CGG - chr5_1:68042457-68042476 Msa0746040:CDS 60.0%
AACTCCGATTGCTCCGACGG+TGG + chr5_1:68042489-68042508 None:intergenic 60.0%
ACCGTCGGAGCAATCGGAGT+TGG - chr5_1:68042488-68042507 Msa0746040:CDS 60.0%
CCCTAGCTGAGCCCTTCCTT+AGG + chr5_1:68042737-68042756 None:intergenic 60.0%
GGTCAGTTATTCCGGGACGG+AGG - chr5_1:68044099-68044118 Msa0746040:intron 60.0%
CAGCCGCTGTAACAGCCCTG+TGG + chr5_1:68042463-68042482 None:intergenic 65.0%
GCCACCACCGTCGGAGCAAT+CGG - chr5_1:68042482-68042501 Msa0746040:CDS 65.0%
TCCGATTGCTCCGACGGTGG+TGG + chr5_1:68042486-68042505 None:intergenic 65.0%
ACAGCGGCTGCCACCACCGT+CGG - chr5_1:68042473-68042492 Msa0746040:CDS 70.0%
Chromosome Type Strat End Strand Name
chr5_1 gene 68041148 68046420 68041148 ID=Msa0746040;Name=Msa0746040
chr5_1 mRNA 68041148 68046420 68041148 ID=Msa0746040-mRNA-1;Parent=Msa0746040;Name=Msa0746040-mRNA-1;_AED=0.10;_eAED=0.10;_QI=83|1|1|1|0.83|0.71|7|391|548
chr5_1 exon 68041148 68041427 68041148 ID=Msa0746040-mRNA-1:exon:20271;Parent=Msa0746040-mRNA-1
chr5_1 exon 68041575 68041756 68041575 ID=Msa0746040-mRNA-1:exon:20270;Parent=Msa0746040-mRNA-1
chr5_1 exon 68042431 68042944 68042431 ID=Msa0746040-mRNA-1:exon:20269;Parent=Msa0746040-mRNA-1
chr5_1 exon 68043115 68043210 68043115 ID=Msa0746040-mRNA-1:exon:20268;Parent=Msa0746040-mRNA-1
chr5_1 exon 68043327 68043370 68043327 ID=Msa0746040-mRNA-1:exon:20267;Parent=Msa0746040-mRNA-1
chr5_1 exon 68044758 68045235 68044758 ID=Msa0746040-mRNA-1:exon:20266;Parent=Msa0746040-mRNA-1
chr5_1 exon 68045894 68046420 68045894 ID=Msa0746040-mRNA-1:exon:20265;Parent=Msa0746040-mRNA-1
chr5_1 five_prime_UTR 68046338 68046420 68046338 ID=Msa0746040-mRNA-1:five_prime_utr;Parent=Msa0746040-mRNA-1
chr5_1 CDS 68045894 68046337 68045894 ID=Msa0746040-mRNA-1:cds;Parent=Msa0746040-mRNA-1
chr5_1 CDS 68044758 68045235 68044758 ID=Msa0746040-mRNA-1:cds;Parent=Msa0746040-mRNA-1
chr5_1 CDS 68043327 68043370 68043327 ID=Msa0746040-mRNA-1:cds;Parent=Msa0746040-mRNA-1
chr5_1 CDS 68043115 68043210 68043115 ID=Msa0746040-mRNA-1:cds;Parent=Msa0746040-mRNA-1
chr5_1 CDS 68042431 68042944 68042431 ID=Msa0746040-mRNA-1:cds;Parent=Msa0746040-mRNA-1
chr5_1 CDS 68041686 68041756 68041686 ID=Msa0746040-mRNA-1:cds;Parent=Msa0746040-mRNA-1
chr5_1 three_prime_UTR 68041575 68041685 68041575 ID=Msa0746040-mRNA-1:three_prime_utr;Parent=Msa0746040-mRNA-1
chr5_1 three_prime_UTR 68041148 68041427 68041148 ID=Msa0746040-mRNA-1:three_prime_utr;Parent=Msa0746040-mRNA-1
Gene Sequence

>Msa0746040

ATGACAGGAGAACACAGTGAAACATCAGTTTCCGATGAATCCAACATCAACCTCAACCTGAAGGCCCCACTTCTACCACTCCATAGAACACAAAGCAATCCTTTCAACCTCAAATCCTTTTTCACCTTCAACAATTTCTATGTTCTTCTTGGACCTTTATTGTCCCTTTTCATCTGTCTCTTTGTTAAACTTGATACTCCCAACAACAATAGCCGTAACATGCTTGCTGTTATTGCTTGGGTTTTCAGTTGGTGGGTTACCTCTGCTTTACCACTTCCTGTTACTTCTATGTGTCCTCTGTTTCTGTTCCCTCTCTTTGGAATTGCTTCTGCTGATACCGTTGCTCATTCTTACATGGACGATGTCATTACCCTTGTTTTGGGAAGTTTCATTCTTGCTCTCGCCGTTGAACGCTACAACGTTCACAGAAGATTGGCCTTGACCGTGACATCAGTGTTCTGTGGGGAACCGTTGAATCCAGCGCTATTGTTATTGGGTCTATGTGCCACGTCATTCTTTGTGAGCATGTGGATGCACAACGTGGCAGCTGCCGTGATGTTGATGCCGGTGGCCACAGGGCTGTTACAGCGGCTGCCACCACCGTCGGAGCAATCGGAGTTGGTGAATAAGTTCAGTAGAGCGGTGGTTCTAACGGTGGTTTATGCCGTGCCAATTGGAGGGATGAGTACTTTGACAGGGACAGGTGTAAATTTGATATTGATTGGAATGTGGAAGAGTCTTGTTCCTGGTGCAAAACCAATAAGTTTCAACACATGGTTCTTCTTTGCTTTTCCGGTAGCGATTGTTTTTCTTATATGCTTTTGGTTTATTCTCTGCTTGATTTACCTAAGGAAGGGCTCAGCTAGGGCTCTCTCTCCTTATTTGAGTAAAGGACACTTGAAGAGGGAATTAGAAGCTCTAGGTCCCATGTCTTTCGCAGAGAAAATGGTGCTATCTGTTTTTGGGTTGCTGATCATATTATGGATGACAAGAAGGATCACAGATGACATTCCCGGATGGGGAACTTTTTTCCATGGCCTTGTTGGTGATGGAAGTGTCAGTGTTATGGTGGCAGTATTATTGTTCATAATACCAAACAGAAAACAAGAGGGTGAGAAGCTAATGGATTGGAATGAATGCAAGAAATTACCTTGGAACCTAATTTTGTTACTTGGAGCTGGTTTTGCTTTAGCTGATGGAGTTCAATCTAGTGGTCTAGCAGATGTGCTTTCTAAAGCTTTAGATTTCTTAGAAGATGCTCCATATTTGGCAATTGCTCCTGCAGTTAGTCTTATAAGTAGTATTATTACTGAGTTCATCACTTCTAATGATGCCACTGCTACACTTATTATCCCACTTCTATATCATATAGCTAGGACTATGCATGTACATCCTCTTCTTCTTATGATCCCAGGAGCAATTGCTACTGAATTTGCTTTCTTGCTTCCCACGTCAACCCCCTCAAATGTAGTTGCTTTTGCTACTGGTCATATTGAAATTCAAGATACGCTCAAAGTTGGTCTGCCACTTAAGGTTGCTGGGATAGCCGTGCTCTCAGTTTTTATGCCATCTCTAGGTGCTTTTGTTTTTGGAACAAATGGTGTCCAATGGATGCCAAACAAAATCTCTCCGTGGTTGACAAATTGA

Protein sequence

>Msa0746040

MTGEHSETSVSDESNINLNLKAPLLPLHRTQSNPFNLKSFFTFNNFYVLLGPLLSLFICLFVKLDTPNNNSRNMLAVIAWVFSWWVTSALPLPVTSMCPLFLFPLFGIASADTVAHSYMDDVITLVLGSFILALAVERYNVHRRLALTVTSVFCGEPLNPALLLLGLCATSFFVSMWMHNVAAAVMLMPVATGLLQRLPPPSEQSELVNKFSRAVVLTVVYAVPIGGMSTLTGTGVNLILIGMWKSLVPGAKPISFNTWFFFAFPVAIVFLICFWFILCLIYLRKGSARALSPYLSKGHLKRELEALGPMSFAEKMVLSVFGLLIILWMTRRITDDIPGWGTFFHGLVGDGSVSVMVAVLLFIIPNRKQEGEKLMDWNECKKLPWNLILLLGAGFALADGVQSSGLADVLSKALDFLEDAPYLAIAPAVSLISSIITEFITSNDATATLIIPLLYHIARTMHVHPLLLMIPGAIATEFAFLLPTSTPSNVVAFATGHIEIQDTLKVGLPLKVAGIAVLSVFMPSLGAFVFGTNGVQWMPNKISPWLTN*