AlfalfaGEDB | Msa1361520

M. sativa cultivar zhongmu-4 / Msa1361520

KEGG: K13173
GO: -
PFAM: PF15346.9

Nr:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361520	XP_013461604.1	98.742	159	2	0	5	163	72	230	4.78e-98	292

Showing 1 to 1 of 1 entries

Previous1Next

Swissprot:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361520	sp\|P0CB26\|Y1089_ARATH	56.579	152	64	2	14	163	126	277	5.28e-21	89.7

Showing 1 to 1 of 1 entries

Previous1Next

Trembl:

Show entries

Search:

Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361520	A0A072V0T4	98.742	159	2	0	5	163	72	230	2.28e-98	292

Showing 1 to 1 of 1 entries

Previous1Next

TFs/TRs:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Protein Kinases:

Show entries

Search:

Gene ID	Type	Classification
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Network:

Co-expression Network

Show entries

Search:

Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0003640	Msa1361520	0.815766	7.811910e-52	-8.615850e-47
Msa0023000	Msa1361520	0.807449	5.027415e-50	-8.615850e-47
Msa0027260	Msa1361520	0.826194	3.101319e-54	-8.615850e-47
Msa0032580	Msa1361520	0.815197	1.045609e-51	-8.615850e-47
Msa0052640	Msa1361520	0.817560	3.095002e-52	-8.615850e-47
Msa0052770	Msa1361520	0.829896	3.983326e-55	-8.615850e-47
Msa0055180	Msa1361520	0.821932	3.104103e-53	-8.615850e-47
Msa0056470	Msa1361520	0.838838	2.267351e-57	-8.615850e-47
Msa0058300	Msa1361520	0.836180	1.088483e-56	-8.615850e-47
Msa0094470	Msa1361520	0.808577	2.892288e-50	-8.615850e-47

Showing 1 to 10 of 142 entries

Previous1 2 3 4 5…15Next

PPI

Show entries

Search:

Gene1	Gene2	Type
No data available in table

Showing 0 to 0 of 0 entries

PreviousNext

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361520	MtrunA17_Chr3g0130941	97.973	148	3	0	5	152	72	219	1.08e-91	265
Msa1361520	MtrunA17_Chr2g0277951	66.667	153	49	2	13	163	121	273	4.84e-42	141

Showing 1 to 2 of 2 entries

Previous1Next

Show entries

Search:

Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1361520	AT5G13340.1	70.253	158	43	2	9	163	84	240	1.46e-39	134
Msa1361520	AT1G10890.4	56.579	152	64	2	14	163	126	277	5.36e-22	89.7
Msa1361520	AT1G10890.2	53.750	160	64	3	14	163	79	238	3.04e-21	87.0
Msa1361520	AT1G10890.3	53.750	160	64	3	14	163	78	237	3.05e-21	87.0
Msa1361520	AT1G10890.1	53.750	160	64	3	14	163	126	285	7.17e-21	86.7

Showing 1 to 5 of 5 entries

Previous1Next

Find 42 sgRNAs with CRISPR-Local

Find 172 sgRNAs with CRISPR-GE

CRISPR-Local

Show entries

Search:

CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAGGGAATTAGAGATGATT+CGG	0.448260	tig0017534:-1733	Msa1361520:CDS
AAATCTAGGGCTAACTCGTA+CGG	0.599093	tig0017534:-1629	Msa1361520:CDS
AAGACGAAGAACATGCTAAT+CGG	0.498353	tig0017534:-1673	Msa1361520:CDS
AAGGTCAGGGTTTCTAACAA+GGG	0.640048	tig0017534:+1547	None:intergenic
AAGTCAAGGTGGAAATTGAA+AGG	0.603231	tig0017534:-2617	Msa1361520:CDS
ACAGTTGTACAGATAAGTTT+GGG	0.401027	tig0017534:+1571	None:intergenic
AGACGAAGAATTAAAACTAT+TGG	0.380286	tig0017534:-2709	Msa1361520:CDS
AGATGCTTGAAGAGAATAGA+AGG	0.347191	tig0017534:-1817	Msa1361520:CDS
AGCTCTGGAACTGCAGAGGA+AGG	0.525953	tig0017534:-1768	Msa1361520:CDS
AGTTGTACAGATAAGTTTGG+GGG	0.712563	tig0017534:+1573	None:intergenic

Showing 1 to 10 of 42 entries

Previous1 2 3 4 5Next

CRISPR-GE

Show entries

Search:

sgRNA_sequence	Strand	Position	Region	GC_content
CGAAGAATTAAAACTATTGG+AGG	-	tig0017534:1591-1610	Msa1361520:three_prime_UTR	30.0%
TGTTGAGGAAAAGCTTAATT+CGG	-	tig0017534:1654-1673	Msa1361520:CDS	30.0%
TAATTACTACTTGTACGAAC+GGG	+	tig0017534:2007-2026	None:intergenic	30.0%
CTAATTACTACTTGTACGAA+CGG	+	tig0017534:2008-2027	None:intergenic	30.0%
AATCAAATTTGGGAATCCTA+TGG	+	tig0017534:2055-2074	None:intergenic	30.0%
AAAGGGAATTAGAGATGATT+CGG	-	tig0017534:2564-2583	Msa1361520:CDS	30.0%
ACAGTTGTACAGATAAGTTT+GGG	+	tig0017534:2729-2748	None:intergenic	30.0%
TACAGTTGTACAGATAAGTT+TGG	+	tig0017534:2730-2749	None:intergenic	30.0%
CAAATATTCATTCAAGGTCA+GGG	+	tig0017534:2766-2785	None:intergenic	30.0%
TCAAATATTCATTCAAGGTC+AGG	+	tig0017534:2767-2786	None:intergenic	30.0%

Showing 1 to 10 of 172 entries

Previous1 2 3 4 5…18Next

Chromosome	Type	Strat	End	Strand	Name
tig0017534	gene	1465	2854	1465	ID=Msa1361520;Name=Msa1361520
tig0017534	mRNA	1465	2854	1465	ID=Msa1361520-mRNA-1;Parent=Msa1361520;Name=Msa1361520-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0\|0.5\|0.66\|0.66\|1\|1\|3\|157\|163
tig0017534	exon	1465	1873	1465	ID=Msa1361520-mRNA-1:exon:12490;Parent=Msa1361520-mRNA-1
tig0017534	exon	2521	2746	2521	ID=Msa1361520-mRNA-1:exon:12489;Parent=Msa1361520-mRNA-1
tig0017534	exon	2841	2854	2841	ID=Msa1361520-mRNA-1:exon:12488;Parent=Msa1361520-mRNA-1
tig0017534	CDS	2841	2854	2841	ID=Msa1361520-mRNA-1:cds;Parent=Msa1361520-mRNA-1
tig0017534	CDS	2521	2746	2521	ID=Msa1361520-mRNA-1:cds;Parent=Msa1361520-mRNA-1
tig0017534	CDS	1622	1873	1622	ID=Msa1361520-mRNA-1:cds;Parent=Msa1361520-mRNA-1
tig0017534	three_prime_UTR	1465	1621	1465	ID=Msa1361520-mRNA-1:three_prime_utr;Parent=Msa1361520-mRNA-1

Gene Sequence

>Msa1361520

ATGATGTCGTCTGGTAGCAAGCGTCAACAAGACGAAGAATTAAAACTATTGGAGGAAGAGACTGCAAGAAGAATAGAAGAAGCTATCCGAAAAAATGTTGAGGAAAAGCTTAATTCGGAGGAAGTCAAGGTGGAAATTGAAAGGCGTGTAGCAGAAGGCGTCAAGAAACTGTTTGATGATGTTGAAGTTCAACTTGAAAAAGAAAAGCAAGATGCTCTTACTGAAGCTAGAAGGAAAGAAGAACAAGCTCGTAAAGAGAGAGAAGAGCTGGATAAGATGCTTGAAGAGAATAGAAGGAGAGTGGAAGAGTCTCAGAGAAGAGAAGCTCTGGAACTGCAGAGGAAGGAGGAGGAACGACAAAGGGAATTAGAGATGATTCGGAGACAGAAAGAAGAGGCGGCTCGGAGAAAGAAGTTGGAAGACGAAGAACATGCTAATCGGAACAATTCTACGGGTAAGAACAAATCTAGGGCTAACTCGTACGGTTTGTAA

Protein sequence

>Msa1361520

MMSSGSKRQQDEELKLLEEETARRIEEAIRKNVEEKLNSEEVKVEIERRVAEGVKKLFDDVEVQLEKEKQDALTEARRKEEQARKEREELDKMLEENRRRVEESQRREALELQRKEEERQRELEMIRRQKEEAARRKKLEDEEHANRNNSTGKNKSRANSYGL*