Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361520 | XP_013461604.1 | 98.742 | 159 | 2 | 0 | 5 | 163 | 72 | 230 | 4.78e-98 | 292 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361520 | sp|P0CB26|Y1089_ARATH | 56.579 | 152 | 64 | 2 | 14 | 163 | 126 | 277 | 5.28e-21 | 89.7 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361520 | A0A072V0T4 | 98.742 | 159 | 2 | 0 | 5 | 163 | 72 | 230 | 2.28e-98 | 292 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0003640 | Msa1361520 | 0.815766 | 7.811910e-52 | -8.615850e-47 |
| Msa0023000 | Msa1361520 | 0.807449 | 5.027415e-50 | -8.615850e-47 |
| Msa0027260 | Msa1361520 | 0.826194 | 3.101319e-54 | -8.615850e-47 |
| Msa0032580 | Msa1361520 | 0.815197 | 1.045609e-51 | -8.615850e-47 |
| Msa0052640 | Msa1361520 | 0.817560 | 3.095002e-52 | -8.615850e-47 |
| Msa0052770 | Msa1361520 | 0.829896 | 3.983326e-55 | -8.615850e-47 |
| Msa0055180 | Msa1361520 | 0.821932 | 3.104103e-53 | -8.615850e-47 |
| Msa0056470 | Msa1361520 | 0.838838 | 2.267351e-57 | -8.615850e-47 |
| Msa0058300 | Msa1361520 | 0.836180 | 1.088483e-56 | -8.615850e-47 |
| Msa0094470 | Msa1361520 | 0.808577 | 2.892288e-50 | -8.615850e-47 |
| Msa0097780 | Msa1361520 | 0.813843 | 2.085162e-51 | -8.615850e-47 |
| Msa0100740 | Msa1361520 | 0.808903 | 2.464200e-50 | -8.615850e-47 |
| Msa0118780 | Msa1361520 | 0.805574 | 1.250324e-49 | -8.615850e-47 |
| Msa1361520 | Msa1368120 | 0.842582 | 2.368071e-58 | -8.615850e-47 |
| Msa1361520 | Msa1385770 | 0.883801 | 3.299860e-71 | -8.615850e-47 |
| Msa1361520 | Msa1386780 | 0.808741 | 2.667782e-50 | -8.615850e-47 |
| Msa1361520 | Msa1392200 | 0.810296 | 1.237157e-50 | -8.615850e-47 |
| Msa1361520 | Msa1394290 | 0.805201 | 1.496434e-49 | -8.615850e-47 |
| Msa1361520 | Msa1404010 | 0.832550 | 8.865519e-56 | -8.615850e-47 |
| Msa1361520 | Msa1409240 | 0.882974 | 6.637121e-71 | -8.615850e-47 |
| Msa1361520 | Msa1420990 | 0.803993 | 2.673430e-49 | -8.615850e-47 |
| Msa1361520 | Msa1432420 | 0.824877 | 6.359903e-54 | -8.615850e-47 |
| Msa1361520 | Msa1434140 | 0.872048 | 4.287544e-67 | -8.615850e-47 |
| Msa1361520 | Msa1451550 | 0.812614 | 3.879452e-51 | -8.615850e-47 |
| Msa1361520 | Msa1454480 | 0.810333 | 1.214690e-50 | -8.615850e-47 |
| Msa0605650 | Msa1361520 | 0.800100 | 1.688851e-48 | -8.615850e-47 |
| Msa0610430 | Msa1361520 | 0.802714 | 4.921140e-49 | -8.615850e-47 |
| Msa0615490 | Msa1361520 | 0.821466 | 3.978278e-53 | -8.615850e-47 |
| Msa0621640 | Msa1361520 | 0.821464 | 3.982380e-53 | -8.615850e-47 |
| Msa0636070 | Msa1361520 | 0.820076 | 8.300984e-53 | -8.615850e-47 |
| Msa0647500 | Msa1361520 | 0.802493 | 5.465435e-49 | -8.615850e-47 |
| Msa0661300 | Msa1361520 | 0.838668 | 2.508446e-57 | -8.615850e-47 |
| Msa0666270 | Msa1361520 | 0.807330 | 5.329378e-50 | -8.615850e-47 |
| Msa0675410 | Msa1361520 | 0.830782 | 2.418381e-55 | -8.615850e-47 |
| Msa0688960 | Msa1361520 | 0.835061 | 2.089042e-56 | -8.615850e-47 |
| Msa0692830 | Msa1361520 | 0.813463 | 2.527219e-51 | -8.615850e-47 |
| Msa0692940 | Msa1361520 | 0.809255 | 2.070852e-50 | -8.615850e-47 |
| Msa0692950 | Msa1361520 | 0.816635 | 4.995892e-52 | -8.615850e-47 |
| Msa0698540 | Msa1361520 | 0.841791 | 3.835004e-58 | -8.615850e-47 |
| Msa0717230 | Msa1361520 | -0.807293 | 5.425229e-50 | -8.615850e-47 |
| Msa0722020 | Msa1361520 | 0.818337 | 2.066245e-52 | -8.615850e-47 |
| Msa0737600 | Msa1361520 | 0.819198 | 1.317564e-52 | -8.615850e-47 |
| Msa0746040 | Msa1361520 | -0.800007 | 1.763632e-48 | -8.615850e-47 |
| Msa0763020 | Msa1361520 | 0.809121 | 2.212281e-50 | -8.615850e-47 |
| Msa0763070 | Msa1361520 | 0.812929 | 3.310737e-51 | -8.615850e-47 |
| Msa0771720 | Msa1361520 | 0.800261 | 1.565799e-48 | -8.615850e-47 |
| Msa0774540 | Msa1361520 | 0.809125 | 2.208732e-50 | -8.615850e-47 |
| Msa0788850 | Msa1361520 | 0.808374 | 3.195541e-50 | -8.615850e-47 |
| Msa0799680 | Msa1361520 | -0.813618 | 2.336472e-51 | -8.615850e-47 |
| Msa0801110 | Msa1361520 | 0.805497 | 1.297503e-49 | -8.615850e-47 |
| Msa0808080 | Msa1361520 | 0.816907 | 4.340407e-52 | -8.615850e-47 |
| Msa0808270 | Msa1361520 | 0.807147 | 5.826694e-50 | -8.615850e-47 |
| Msa0833310 | Msa1361520 | 0.829729 | 4.374371e-55 | -8.615850e-47 |
| Msa0138630 | Msa1361520 | 0.816779 | 4.637887e-52 | -8.615850e-47 |
| Msa0140650 | Msa1361520 | 0.943383 | 1.329868e-102 | -8.615850e-47 |
| Msa0140820 | Msa1361520 | 0.813681 | 2.262766e-51 | -8.615850e-47 |
| Msa0145730 | Msa1361520 | 0.811935 | 5.458035e-51 | -8.615850e-47 |
| Msa0159180 | Msa1361520 | 0.821571 | 3.762658e-53 | -8.615850e-47 |
| Msa0159220 | Msa1361520 | 0.807121 | 5.899135e-50 | -8.615850e-47 |
| Msa0162130 | Msa1361520 | 0.815854 | 7.468827e-52 | -8.615850e-47 |
| Msa0172970 | Msa1361520 | 0.807808 | 4.217472e-50 | -8.615850e-47 |
| Msa0184780 | Msa1361520 | 0.810586 | 1.070838e-50 | -8.615850e-47 |
| Msa0189520 | Msa1361520 | 0.805570 | 1.252650e-49 | -8.615850e-47 |
| Msa0194480 | Msa1361520 | 0.824248 | 8.946156e-54 | -8.615850e-47 |
| Msa0194950 | Msa1361520 | -0.814636 | 1.392970e-51 | -8.615850e-47 |
| Msa0199690 | Msa1361520 | 0.803810 | 2.918944e-49 | -8.615850e-47 |
| Msa0199880 | Msa1361520 | 0.829347 | 5.415257e-55 | -8.615850e-47 |
| Msa0209350 | Msa1361520 | 0.825390 | 4.810939e-54 | -8.615850e-47 |
| Msa0211190 | Msa1361520 | 0.808176 | 3.522257e-50 | -8.615850e-47 |
| Msa0232050 | Msa1361520 | 0.800370 | 1.487886e-48 | -8.615850e-47 |
| Msa0236270 | Msa1361520 | 0.804413 | 2.186591e-49 | -8.615850e-47 |
| Msa1238390 | Msa1361520 | 0.823559 | 1.297871e-53 | -8.615850e-47 |
| Msa1243740 | Msa1361520 | -0.804088 | 2.555199e-49 | -8.615850e-47 |
| Msa1244600 | Msa1361520 | 0.800939 | 1.138818e-48 | -8.615850e-47 |
| Msa1253020 | Msa1361520 | 0.808881 | 2.490917e-50 | -8.615850e-47 |
| Msa1254730 | Msa1361520 | 0.828958 | 6.730304e-55 | -8.615850e-47 |
| Msa1275360 | Msa1361520 | 0.803709 | 3.063342e-49 | -8.615850e-47 |
| Msa1293510 | Msa1361520 | 0.801298 | 9.617267e-49 | -8.615850e-47 |
| Msa1294820 | Msa1361520 | 0.805298 | 1.428299e-49 | -8.615850e-47 |
| Msa1296830 | Msa1361520 | 0.810272 | 1.251948e-50 | -8.615850e-47 |
| Msa1332590 | Msa1361520 | 0.811939 | 5.446473e-51 | -8.615850e-47 |
| Msa1333110 | Msa1361520 | 0.809366 | 1.960557e-50 | -8.615850e-47 |
| Msa0366890 | Msa1361520 | 0.834460 | 2.959827e-56 | -8.615850e-47 |
| Msa0369220 | Msa1361520 | 0.825335 | 4.958433e-54 | -8.615850e-47 |
| Msa0369450 | Msa1361520 | 0.812275 | 4.601849e-51 | -8.615850e-47 |
| Msa0376300 | Msa1361520 | 0.820437 | 6.863260e-53 | -8.615850e-47 |
| Msa0376310 | Msa1361520 | 0.813541 | 2.429194e-51 | -8.615850e-47 |
| Msa0378490 | Msa1361520 | 0.881027 | 3.375448e-70 | -8.615850e-47 |
| Msa0383800 | Msa1361520 | 0.800802 | 1.214549e-48 | -8.615850e-47 |
| Msa0385580 | Msa1361520 | 0.806969 | 6.352537e-50 | -8.615850e-47 |
| Msa0387820 | Msa1361520 | 0.821044 | 4.977259e-53 | -8.615850e-47 |
| Msa0388050 | Msa1361520 | 0.800893 | 1.164018e-48 | -8.615850e-47 |
| Msa0397540 | Msa1361520 | 0.803017 | 4.261470e-49 | -8.615850e-47 |
| Msa0402790 | Msa1361520 | 0.801355 | 9.364815e-49 | -8.615850e-47 |
| Msa0414800 | Msa1361520 | 0.816176 | 6.328632e-52 | -8.615850e-47 |
| Msa0427150 | Msa1361520 | 0.829647 | 4.578458e-55 | -8.615850e-47 |
| Msa0458060 | Msa1361520 | 0.822118 | 2.810246e-53 | -8.615850e-47 |
| Msa0471440 | Msa1361520 | 0.816212 | 6.212286e-52 | -8.615850e-47 |
| Msa0471590 | Msa1361520 | 0.829928 | 3.911374e-55 | -8.615850e-47 |
| Msa0477080 | Msa1361520 | 0.805231 | 1.474851e-49 | -8.615850e-47 |
| Msa1030620 | Msa1361520 | 0.813143 | 2.972052e-51 | -8.615850e-47 |
| Msa1037420 | Msa1361520 | 0.857674 | 1.389474e-62 | -8.615850e-47 |
| Msa1046020 | Msa1361520 | 0.814893 | 1.221834e-51 | -8.615850e-47 |
| Msa1046060 | Msa1361520 | 0.810723 | 1.000473e-50 | -8.615850e-47 |
| Msa1051200 | Msa1361520 | 0.803025 | 4.243575e-49 | -8.615850e-47 |
| Msa1080290 | Msa1361520 | 0.803644 | 3.158841e-49 | -8.615850e-47 |
| Msa1091100 | Msa1361520 | 0.802618 | 5.150828e-49 | -8.615850e-47 |
| Msa1102220 | Msa1361520 | 0.807320 | 5.355651e-50 | -8.615850e-47 |
| Msa1104210 | Msa1361520 | 0.808576 | 2.893335e-50 | -8.615850e-47 |
| Msa0242410 | Msa1361520 | 0.824532 | 7.671583e-54 | -8.615850e-47 |
| Msa0262310 | Msa1361520 | 0.808039 | 3.766269e-50 | -8.615850e-47 |
| Msa0265430 | Msa1361520 | 0.811184 | 7.946686e-51 | -8.615850e-47 |
| Msa0280610 | Msa1361520 | 0.824461 | 7.971685e-54 | -8.615850e-47 |
| Msa0298700 | Msa1361520 | 0.801185 | 1.014609e-48 | -8.615850e-47 |
| Msa0309770 | Msa1361520 | 0.802987 | 4.321951e-49 | -8.615850e-47 |
| Msa0310030 | Msa1361520 | 0.809126 | 2.207753e-50 | -8.615850e-47 |
| Msa0315440 | Msa1361520 | -0.827259 | 1.726549e-54 | -8.615850e-47 |
| Msa0322890 | Msa1361520 | 0.807678 | 4.494153e-50 | -8.615850e-47 |
| Msa0337240 | Msa1361520 | 0.803306 | 3.712728e-49 | -8.615850e-47 |
| Msa0337650 | Msa1361520 | 0.812347 | 4.438312e-51 | -8.615850e-47 |
| Msa0340380 | Msa1361520 | 0.820433 | 6.878322e-53 | -8.615850e-47 |
| Msa1123810 | Msa1361520 | 0.844989 | 5.371553e-59 | -8.615850e-47 |
| Msa1136540 | Msa1361520 | 0.804722 | 1.884562e-49 | -8.615850e-47 |
| Msa1150710 | Msa1361520 | 0.800639 | 1.311278e-48 | -8.615850e-47 |
| Msa1165940 | Msa1361520 | 0.801123 | 1.044536e-48 | -8.615850e-47 |
| Msa1166860 | Msa1361520 | 0.805348 | 1.394252e-49 | -8.615850e-47 |
| Msa1173140 | Msa1361520 | 0.827293 | 1.694463e-54 | -8.615850e-47 |
| Msa1199990 | Msa1361520 | 0.817583 | 3.057990e-52 | -8.615850e-47 |
| Msa1204250 | Msa1361520 | 0.806766 | 7.012918e-50 | -8.615850e-47 |
| Msa0485850 | Msa1361520 | 0.804489 | 2.107427e-49 | -8.615850e-47 |
| Msa0510350 | Msa1361520 | 0.821035 | 5.000581e-53 | -8.615850e-47 |
| Msa0512340 | Msa1361520 | 0.841833 | 3.739319e-58 | -8.615850e-47 |
| Msa0531530 | Msa1361520 | 0.803251 | 3.810377e-49 | -8.615850e-47 |
| Msa0534900 | Msa1361520 | 0.815167 | 1.061794e-51 | -8.615850e-47 |
| Msa0541360 | Msa1361520 | 0.829910 | 3.951940e-55 | -8.615850e-47 |
| Msa0541410 | Msa1361520 | 0.805667 | 1.194991e-49 | -8.615850e-47 |
| Msa0548240 | Msa1361520 | 0.837476 | 5.082210e-57 | -8.615850e-47 |
| Msa0556060 | Msa1361520 | 0.814534 | 1.467309e-51 | -8.615850e-47 |
| Msa0588260 | Msa1361520 | 0.831722 | 1.421154e-55 | -8.615850e-47 |
| Msa0847770 | Msa1361520 | 0.826217 | 3.062297e-54 | -8.615850e-47 |
| Msa0849030 | Msa1361520 | 0.806343 | 8.614360e-50 | -8.615850e-47 |
| Msa0927260 | Msa1361520 | 0.804344 | 2.259468e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361520 | MtrunA17_Chr3g0130941 | 97.973 | 148 | 3 | 0 | 5 | 152 | 72 | 219 | 1.08e-91 | 265 |
| Msa1361520 | MtrunA17_Chr2g0277951 | 66.667 | 153 | 49 | 2 | 13 | 163 | 121 | 273 | 4.84e-42 | 141 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa1361520 | AT5G13340.1 | 70.253 | 158 | 43 | 2 | 9 | 163 | 84 | 240 | 1.46e-39 | 134 |
| Msa1361520 | AT1G10890.4 | 56.579 | 152 | 64 | 2 | 14 | 163 | 126 | 277 | 5.36e-22 | 89.7 |
| Msa1361520 | AT1G10890.2 | 53.750 | 160 | 64 | 3 | 14 | 163 | 79 | 238 | 3.04e-21 | 87.0 |
| Msa1361520 | AT1G10890.3 | 53.750 | 160 | 64 | 3 | 14 | 163 | 78 | 237 | 3.05e-21 | 87.0 |
| Msa1361520 | AT1G10890.1 | 53.750 | 160 | 64 | 3 | 14 | 163 | 126 | 285 | 7.17e-21 | 86.7 |
Find 42 sgRNAs with CRISPR-Local
Find 172 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| CTACGGGTAAGAACAAATCT+AGG | 0.320808 | tig0017534:-1643 | Msa1361520:CDS |
| AGATGCTTGAAGAGAATAGA+AGG | 0.347191 | tig0017534:-1817 | Msa1361520:CDS |
| TCAAATATTCATTCAAGGTC+AGG | 0.347673 | tig0017534:+1533 | None:intergenic |
| TACAGTTGTACAGATAAGTT+TGG | 0.351684 | tig0017534:+1570 | None:intergenic |
| CTACAATTTATGATGTCGTC+TGG | 0.373534 | tig0017534:-2841 | None:intergenic |
| AGACGAAGAATTAAAACTAT+TGG | 0.380286 | tig0017534:-2709 | Msa1361520:CDS |
| GTCTCAGAGAAGAGAAGCTC+TGG | 0.388969 | tig0017534:-1783 | Msa1361520:CDS |
| ACAGTTGTACAGATAAGTTT+GGG | 0.401027 | tig0017534:+1571 | None:intergenic |
| TGTTGAGGAAAAGCTTAATT+CGG | 0.416953 | tig0017534:-2643 | Msa1361520:CDS |
| AAAGGGAATTAGAGATGATT+CGG | 0.448260 | tig0017534:-1733 | Msa1361520:CDS |
| ATGCTCTTACTGAAGCTAGA+AGG | 0.450504 | tig0017534:-2527 | Msa1361520:CDS |
| GGCGGCTCGGAGAAAGAAGT+TGG | 0.469142 | tig0017534:-1696 | Msa1361520:CDS |
| CAAGGTCAGGGTTTCTAACA+AGG | 0.477265 | tig0017534:+1546 | None:intergenic |
| GACAGAAAGAAGAGGCGGCT+CGG | 0.492446 | tig0017534:-1709 | Msa1361520:CDS |
| TGAAGAGAATAGAAGGAGAG+TGG | 0.496275 | tig0017534:-1810 | Msa1361520:CDS |
| AAGACGAAGAACATGCTAAT+CGG | 0.498353 | tig0017534:-1673 | Msa1361520:CDS |
| CAAATATTCATTCAAGGTCA+GGG | 0.505489 | tig0017534:+1534 | None:intergenic |
| GAAGGAGGAGGAACGACAAA+GGG | 0.506761 | tig0017534:-1750 | Msa1361520:CDS |
| CGAAGAATTAAAACTATTGG+AGG | 0.522415 | tig0017534:-2706 | Msa1361520:CDS |
| TCGTAAAGAGAGAGAAGAGC+TGG | 0.523303 | tig0017534:-1843 | Msa1361520:CDS |
| AGCTCTGGAACTGCAGAGGA+AGG | 0.525953 | tig0017534:-1768 | Msa1361520:CDS |
| TGCTAATCGGAACAATTCTA+CGG | 0.526223 | tig0017534:-1660 | Msa1361520:CDS |
| GAATATCAAATATTCATTCA+AGG | 0.532054 | tig0017534:+1528 | None:intergenic |
| TACAATTTATGATGTCGTCT+GGG | 0.539257 | tig0017534:-2840 | None:intergenic |
| GGAAGGAGGAGGAACGACAA+AGG | 0.540434 | tig0017534:-1751 | Msa1361520:CDS |
| GCTTAATTCGGAGGAAGTCA+AGG | 0.565124 | tig0017534:-2631 | Msa1361520:CDS |
| TACGGGTAAGAACAAATCTA+GGG | 0.569086 | tig0017534:-1642 | Msa1361520:CDS |
| GGAACTGCAGAGGAAGGAGG+AGG | 0.574057 | tig0017534:-1762 | Msa1361520:CDS |
| GCTAATCGGAACAATTCTAC+GGG | 0.589835 | tig0017534:-1659 | Msa1361520:CDS |
| AAATCTAGGGCTAACTCGTA+CGG | 0.599093 | tig0017534:-1629 | Msa1361520:CDS |
| AAGTCAAGGTGGAAATTGAA+AGG | 0.603231 | tig0017534:-2617 | Msa1361520:CDS |
| TCTGGAACTGCAGAGGAAGG+AGG | 0.605899 | tig0017534:-1765 | Msa1361520:CDS |
| ATAAGCTGTATCTCGACAGT+AGG | 0.606429 | tig0017534:+1506 | None:intergenic |
| ATTGAAAGGCGTGTAGCAGA+AGG | 0.606667 | tig0017534:-2603 | Msa1361520:CDS |
| TGAGGAAAAGCTTAATTCGG+AGG | 0.614529 | tig0017534:-2640 | Msa1361520:CDS |
| GAGAAGCTCTGGAACTGCAG+AGG | 0.616097 | tig0017534:-1772 | Msa1361520:CDS |
| AAGGTCAGGGTTTCTAACAA+GGG | 0.640048 | tig0017534:+1547 | None:intergenic |
| GATTCGGAGACAGAAAGAAG+AGG | 0.654657 | tig0017534:-1717 | Msa1361520:CDS |
| CAGTTGTACAGATAAGTTTG+GGG | 0.657251 | tig0017534:+1572 | None:intergenic |
| TCGGAGACAGAAAGAAGAGG+CGG | 0.658226 | tig0017534:-1714 | Msa1361520:CDS |
| TAATTCGGAGGAAGTCAAGG+TGG | 0.689080 | tig0017534:-2628 | Msa1361520:CDS |
| AGTTGTACAGATAAGTTTGG+GGG | 0.712563 | tig0017534:+1573 | None:intergenic |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | GTTCTTTATCATTTTGTATT+TGG | - | tig0017534:1547-1566 | Msa1361520:three_prime_UTR | 20.0% |
| !! | TTTCAAATGTAATTACAGAA+TGG | + | tig0017534:1872-1891 | None:intergenic | 20.0% |
| !! | TCTGTAATTACATTTGAAAA+AGG | - | tig0017534:1873-1892 | Msa1361520:intron | 20.0% |
| !! | TTGAAATTGTGTTAAATTTC+CGG | - | tig0017534:1911-1930 | Msa1361520:intron | 20.0% |
| !! | GTAGTAATTAGATCATAAAA+AGG | - | tig0017534:2017-2036 | Msa1361520:intron | 20.0% |
| !!! | TTAGATCATAAAAAGGTTTT+TGG | - | tig0017534:2024-2043 | Msa1361520:intron | 20.0% |
| !! | ACAAATCTTGAATCAAATTT+GGG | + | tig0017534:2065-2084 | None:intergenic | 20.0% |
| !! | TACAAATCTTGAATCAAATT+TGG | + | tig0017534:2066-2085 | None:intergenic | 20.0% |
| !! | GATAAAGATGTTTAAAGATA+TGG | + | tig0017534:2110-2129 | None:intergenic | 20.0% |
| !! | TATCTTTAAACATCTTTATC+TGG | - | tig0017534:2110-2129 | Msa1361520:intron | 20.0% |
| !! | ATAGTAATCAAGTCATAAAA+AGG | - | tig0017534:2185-2204 | Msa1361520:intron | 20.0% |
| !! | TACAAATCTTGAATCAAATT+TGG | + | tig0017534:2066-2085 | None:intergenic | 20.0% |
| !!! | TAATGGATAAAGATAAGATA+TGG | + | tig0017534:2278-2297 | None:intergenic | 20.0% |
| !!! | TGAATACTACTTTTAATGTA+TGG | - | tig0017534:2386-2405 | Msa1361520:intron | 20.0% |
| !! | GAATATCAAATATTCATTCA+AGG | + | tig0017534:2772-2791 | None:intergenic | 20.0% |
| !!! | GTTCTTTATCATTTTGTATT+TGG | - | tig0017534:1547-1566 | Msa1361520:three_prime_UTR | 20.0% |
| !! | TTTCAAATGTAATTACAGAA+TGG | + | tig0017534:1872-1891 | None:intergenic | 20.0% |
| !! | TCTGTAATTACATTTGAAAA+AGG | - | tig0017534:1873-1892 | Msa1361520:intron | 20.0% |
| !! | TTGAAATTGTGTTAAATTTC+CGG | - | tig0017534:1911-1930 | Msa1361520:intron | 20.0% |
| !! | GTAGTAATTAGATCATAAAA+AGG | - | tig0017534:2017-2036 | Msa1361520:intron | 20.0% |
| !!! | TTAGATCATAAAAAGGTTTT+TGG | - | tig0017534:2024-2043 | Msa1361520:intron | 20.0% |
| !! | ACAAATCTTGAATCAAATTT+GGG | + | tig0017534:2065-2084 | None:intergenic | 20.0% |
| !! | TACAAATCTTGAATCAAATT+TGG | + | tig0017534:2066-2085 | None:intergenic | 20.0% |
| !! | GATAAAGATGTTTAAAGATA+TGG | + | tig0017534:2110-2129 | None:intergenic | 20.0% |
| !! | TATCTTTAAACATCTTTATC+TGG | - | tig0017534:2110-2129 | Msa1361520:intron | 20.0% |
| !! | ATAGTAATCAAGTCATAAAA+AGG | - | tig0017534:2185-2204 | Msa1361520:intron | 20.0% |
| !! | TACAAATCTTGAATCAAATT+TGG | + | tig0017534:2066-2085 | None:intergenic | 20.0% |
| !!! | TAATGGATAAAGATAAGATA+TGG | + | tig0017534:2278-2297 | None:intergenic | 20.0% |
| !!! | TGAATACTACTTTTAATGTA+TGG | - | tig0017534:2386-2405 | Msa1361520:intron | 20.0% |
| !! | GAATATCAAATATTCATTCA+AGG | + | tig0017534:2772-2791 | None:intergenic | 20.0% |
| ! | AGACGAAGAATTAAAACTAT+TGG | - | tig0017534:1588-1607 | Msa1361520:three_prime_UTR | 25.0% |
| ! | ACAAATAACAAATCGTACAT+TGG | + | tig0017534:2355-2374 | None:intergenic | 25.0% |
| ! | AGACGAAGAATTAAAACTAT+TGG | - | tig0017534:1588-1607 | Msa1361520:three_prime_UTR | 25.0% |
| ! | ACAAATAACAAATCGTACAT+TGG | + | tig0017534:2355-2374 | None:intergenic | 25.0% |
| CGAAGAATTAAAACTATTGG+AGG | - | tig0017534:1591-1610 | Msa1361520:three_prime_UTR | 30.0% | |
| !! | GCTTTTCCTCAACATTTTTT+CGG | + | tig0017534:1648-1667 | None:intergenic | 30.0% |
| TGTTGAGGAAAAGCTTAATT+CGG | - | tig0017534:1654-1673 | Msa1361520:CDS | 30.0% | |
| TAATTACTACTTGTACGAAC+GGG | + | tig0017534:2007-2026 | None:intergenic | 30.0% | |
| CTAATTACTACTTGTACGAA+CGG | + | tig0017534:2008-2027 | None:intergenic | 30.0% | |
| !! | AAGGTTTTTGGATATTCCAT+AGG | - | tig0017534:2036-2055 | Msa1361520:intron | 30.0% |
| AATCAAATTTGGGAATCCTA+TGG | + | tig0017534:2055-2074 | None:intergenic | 30.0% | |
| !! | GTACATTGGTTAGGTTTTAA+TGG | + | tig0017534:2341-2360 | None:intergenic | 30.0% |
| ! | TAACAAATCGTACATTGGTT+AGG | + | tig0017534:2350-2369 | None:intergenic | 30.0% |
| AAAGGGAATTAGAGATGATT+CGG | - | tig0017534:2564-2583 | Msa1361520:CDS | 30.0% | |
| ACAGTTGTACAGATAAGTTT+GGG | + | tig0017534:2729-2748 | None:intergenic | 30.0% | |
| TACAGTTGTACAGATAAGTT+TGG | + | tig0017534:2730-2749 | None:intergenic | 30.0% | |
| CAAATATTCATTCAAGGTCA+GGG | + | tig0017534:2766-2785 | None:intergenic | 30.0% | |
| TCAAATATTCATTCAAGGTC+AGG | + | tig0017534:2767-2786 | None:intergenic | 30.0% | |
| CGAAGAATTAAAACTATTGG+AGG | - | tig0017534:1591-1610 | Msa1361520:three_prime_UTR | 30.0% | |
| !! | GCTTTTCCTCAACATTTTTT+CGG | + | tig0017534:1648-1667 | None:intergenic | 30.0% |
| TGTTGAGGAAAAGCTTAATT+CGG | - | tig0017534:1654-1673 | Msa1361520:CDS | 30.0% | |
| TAATTACTACTTGTACGAAC+GGG | + | tig0017534:2007-2026 | None:intergenic | 30.0% | |
| CTAATTACTACTTGTACGAA+CGG | + | tig0017534:2008-2027 | None:intergenic | 30.0% | |
| !! | AAGGTTTTTGGATATTCCAT+AGG | - | tig0017534:2036-2055 | Msa1361520:intron | 30.0% |
| AATCAAATTTGGGAATCCTA+TGG | + | tig0017534:2055-2074 | None:intergenic | 30.0% | |
| !! | GTACATTGGTTAGGTTTTAA+TGG | + | tig0017534:2341-2360 | None:intergenic | 30.0% |
| ! | TAACAAATCGTACATTGGTT+AGG | + | tig0017534:2350-2369 | None:intergenic | 30.0% |
| AAAGGGAATTAGAGATGATT+CGG | - | tig0017534:2564-2583 | Msa1361520:CDS | 30.0% | |
| ACAGTTGTACAGATAAGTTT+GGG | + | tig0017534:2729-2748 | None:intergenic | 30.0% | |
| TACAGTTGTACAGATAAGTT+TGG | + | tig0017534:2730-2749 | None:intergenic | 30.0% | |
| CAAATATTCATTCAAGGTCA+GGG | + | tig0017534:2766-2785 | None:intergenic | 30.0% | |
| TCAAATATTCATTCAAGGTC+AGG | + | tig0017534:2767-2786 | None:intergenic | 30.0% | |
| AGCTATCCGAAAAAATGTTG+AGG | - | tig0017534:1639-1658 | Msa1361520:CDS | 35.0% | |
| AAGTCAAGGTGGAAATTGAA+AGG | - | tig0017534:1680-1699 | Msa1361520:CDS | 35.0% | |
| ! | GTTACCCTTTTTCTATGAGA+TGG | - | tig0017534:1820-1839 | Msa1361520:CDS | 35.0% |
| ATCGCCATCTCATAGAAAAA+GGG | + | tig0017534:1827-1846 | None:intergenic | 35.0% | |
| AATCGCCATCTCATAGAAAA+AGG | + | tig0017534:1828-1847 | None:intergenic | 35.0% | |
| TGTGTTAAATTTCCGGCAAT+CGG | - | tig0017534:1918-1937 | Msa1361520:intron | 35.0% | |
| ! | CATACAAAATTACCGATTGC+CGG | + | tig0017534:1933-1952 | None:intergenic | 35.0% |
| AATTACTACTTGTACGAACG+GGG | + | tig0017534:2006-2025 | None:intergenic | 35.0% | |
| CCTGATTATCATAGTGCTAA+TGG | + | tig0017534:2295-2314 | None:intergenic | 35.0% | |
| CCATTAGCACTATGATAATC+AGG | - | tig0017534:2292-2311 | Msa1361520:intron | 35.0% | |
| !! | CATTGGTTAGGTTTTAATGG+TGG | + | tig0017534:2338-2357 | None:intergenic | 35.0% |
| ! | TGTGTTTGTTGAAATTCTGC+AGG | - | tig0017534:2424-2443 | Msa1361520:intron | 35.0% |
| AGATGCTTGAAGAGAATAGA+AGG | - | tig0017534:2480-2499 | Msa1361520:intron | 35.0% | |
| AAGACGAAGAACATGCTAAT+CGG | - | tig0017534:2624-2643 | Msa1361520:CDS | 35.0% | |
| TGCTAATCGGAACAATTCTA+CGG | - | tig0017534:2637-2656 | Msa1361520:CDS | 35.0% | |
| TACGGGTAAGAACAAATCTA+GGG | - | tig0017534:2655-2674 | Msa1361520:CDS | 35.0% | |
| AGTTGTACAGATAAGTTTGG+GGG | + | tig0017534:2727-2746 | None:intergenic | 35.0% | |
| CAGTTGTACAGATAAGTTTG+GGG | + | tig0017534:2728-2747 | None:intergenic | 35.0% | |
| AGCTATCCGAAAAAATGTTG+AGG | - | tig0017534:1639-1658 | Msa1361520:CDS | 35.0% | |
| AAGTCAAGGTGGAAATTGAA+AGG | - | tig0017534:1680-1699 | Msa1361520:CDS | 35.0% | |
| ! | GTTACCCTTTTTCTATGAGA+TGG | - | tig0017534:1820-1839 | Msa1361520:CDS | 35.0% |
| ATCGCCATCTCATAGAAAAA+GGG | + | tig0017534:1827-1846 | None:intergenic | 35.0% | |
| AATCGCCATCTCATAGAAAA+AGG | + | tig0017534:1828-1847 | None:intergenic | 35.0% | |
| TGTGTTAAATTTCCGGCAAT+CGG | - | tig0017534:1918-1937 | Msa1361520:intron | 35.0% | |
| ! | CATACAAAATTACCGATTGC+CGG | + | tig0017534:1933-1952 | None:intergenic | 35.0% |
| AATTACTACTTGTACGAACG+GGG | + | tig0017534:2006-2025 | None:intergenic | 35.0% | |
| CCTGATTATCATAGTGCTAA+TGG | + | tig0017534:2295-2314 | None:intergenic | 35.0% | |
| CCATTAGCACTATGATAATC+AGG | - | tig0017534:2292-2311 | Msa1361520:intron | 35.0% | |
| !! | CATTGGTTAGGTTTTAATGG+TGG | + | tig0017534:2338-2357 | None:intergenic | 35.0% |
| ! | TGTGTTTGTTGAAATTCTGC+AGG | - | tig0017534:2424-2443 | Msa1361520:intron | 35.0% |
| AGATGCTTGAAGAGAATAGA+AGG | - | tig0017534:2480-2499 | Msa1361520:intron | 35.0% | |
| AAGACGAAGAACATGCTAAT+CGG | - | tig0017534:2624-2643 | Msa1361520:CDS | 35.0% | |
| TGCTAATCGGAACAATTCTA+CGG | - | tig0017534:2637-2656 | Msa1361520:CDS | 35.0% | |
| TACGGGTAAGAACAAATCTA+GGG | - | tig0017534:2655-2674 | Msa1361520:CDS | 35.0% | |
| AGTTGTACAGATAAGTTTGG+GGG | + | tig0017534:2727-2746 | None:intergenic | 35.0% | |
| CAGTTGTACAGATAAGTTTG+GGG | + | tig0017534:2728-2747 | None:intergenic | 35.0% | |
| TGAGGAAAAGCTTAATTCGG+AGG | - | tig0017534:1657-1676 | Msa1361520:CDS | 40.0% | |
| ATGCTCTTACTGAAGCTAGA+AGG | - | tig0017534:1770-1789 | Msa1361520:CDS | 40.0% | |
| TTCTATGAGATGGCGATTGA+AGG | - | tig0017534:1830-1849 | Msa1361520:CDS | 40.0% | |
| TCTATGAGATGGCGATTGAA+GGG | - | tig0017534:1831-1850 | Msa1361520:CDS | 40.0% | |
| CAAAAATCCTGGTTTCTGCA+GGG | + | tig0017534:2150-2169 | None:intergenic | 40.0% | |
| ! | AACCAGGATTTTTGCTCTGT+TGG | - | tig0017534:2156-2175 | Msa1361520:intron | 40.0% |
| TGAAGAGAATAGAAGGAGAG+TGG | - | tig0017534:2487-2506 | Msa1361520:intron | 40.0% | |
| GCTAATCGGAACAATTCTAC+GGG | - | tig0017534:2638-2657 | Msa1361520:CDS | 40.0% | |
| CTACGGGTAAGAACAAATCT+AGG | - | tig0017534:2654-2673 | Msa1361520:CDS | 40.0% | |
| ! | AAATCTAGGGCTAACTCGTA+CGG | - | tig0017534:2668-2687 | Msa1361520:CDS | 40.0% |
| AAGGTCAGGGTTTCTAACAA+GGG | + | tig0017534:2753-2772 | None:intergenic | 40.0% | |
| ATAAGCTGTATCTCGACAGT+AGG | + | tig0017534:2794-2813 | None:intergenic | 40.0% | |
| TGAGGAAAAGCTTAATTCGG+AGG | - | tig0017534:1657-1676 | Msa1361520:CDS | 40.0% | |
| ATGCTCTTACTGAAGCTAGA+AGG | - | tig0017534:1770-1789 | Msa1361520:CDS | 40.0% | |
| TTCTATGAGATGGCGATTGA+AGG | - | tig0017534:1830-1849 | Msa1361520:CDS | 40.0% | |
| TCTATGAGATGGCGATTGAA+GGG | - | tig0017534:1831-1850 | Msa1361520:CDS | 40.0% | |
| CAAAAATCCTGGTTTCTGCA+GGG | + | tig0017534:2150-2169 | None:intergenic | 40.0% | |
| ! | AACCAGGATTTTTGCTCTGT+TGG | - | tig0017534:2156-2175 | Msa1361520:intron | 40.0% |
| TGAAGAGAATAGAAGGAGAG+TGG | - | tig0017534:2487-2506 | Msa1361520:intron | 40.0% | |
| GCTAATCGGAACAATTCTAC+GGG | - | tig0017534:2638-2657 | Msa1361520:CDS | 40.0% | |
| CTACGGGTAAGAACAAATCT+AGG | - | tig0017534:2654-2673 | Msa1361520:CDS | 40.0% | |
| ! | AAATCTAGGGCTAACTCGTA+CGG | - | tig0017534:2668-2687 | Msa1361520:CDS | 40.0% |
| AAGGTCAGGGTTTCTAACAA+GGG | + | tig0017534:2753-2772 | None:intergenic | 40.0% | |
| ATAAGCTGTATCTCGACAGT+AGG | + | tig0017534:2794-2813 | None:intergenic | 40.0% | |
| GCTTAATTCGGAGGAAGTCA+AGG | - | tig0017534:1666-1685 | Msa1361520:CDS | 45.0% | |
| TAATTCGGAGGAAGTCAAGG+TGG | - | tig0017534:1669-1688 | Msa1361520:CDS | 45.0% | |
| ! | ATTGAAAGGCGTGTAGCAGA+AGG | - | tig0017534:1694-1713 | Msa1361520:CDS | 45.0% |
| CTATGAGATGGCGATTGAAG+GGG | - | tig0017534:1832-1851 | Msa1361520:CDS | 45.0% | |
| GCAAAAATCCTGGTTTCTGC+AGG | + | tig0017534:2151-2170 | None:intergenic | 45.0% | |
| CACCAACAGAGCAAAAATCC+TGG | + | tig0017534:2161-2180 | None:intergenic | 45.0% | |
| TCGTAAAGAGAGAGAAGAGC+TGG | - | tig0017534:2454-2473 | Msa1361520:intron | 45.0% | |
| GATTCGGAGACAGAAAGAAG+AGG | - | tig0017534:2580-2599 | Msa1361520:CDS | 45.0% | |
| CAAGGTCAGGGTTTCTAACA+AGG | + | tig0017534:2754-2773 | None:intergenic | 45.0% | |
| GCTTAATTCGGAGGAAGTCA+AGG | - | tig0017534:1666-1685 | Msa1361520:CDS | 45.0% | |
| TAATTCGGAGGAAGTCAAGG+TGG | - | tig0017534:1669-1688 | Msa1361520:CDS | 45.0% | |
| ! | ATTGAAAGGCGTGTAGCAGA+AGG | - | tig0017534:1694-1713 | Msa1361520:CDS | 45.0% |
| CTATGAGATGGCGATTGAAG+GGG | - | tig0017534:1832-1851 | Msa1361520:CDS | 45.0% | |
| GCAAAAATCCTGGTTTCTGC+AGG | + | tig0017534:2151-2170 | None:intergenic | 45.0% | |
| CACCAACAGAGCAAAAATCC+TGG | + | tig0017534:2161-2180 | None:intergenic | 45.0% | |
| TCGTAAAGAGAGAGAAGAGC+TGG | - | tig0017534:2454-2473 | Msa1361520:intron | 45.0% | |
| GATTCGGAGACAGAAAGAAG+AGG | - | tig0017534:2580-2599 | Msa1361520:CDS | 45.0% | |
| CAAGGTCAGGGTTTCTAACA+AGG | + | tig0017534:2754-2773 | None:intergenic | 45.0% | |
| AGATTCTGGGTTCTGCAAGG+TGG | + | tig0017534:1980-1999 | None:intergenic | 50.0% | |
| CAGAGATTCTGGGTTCTGCA+AGG | + | tig0017534:1983-2002 | None:intergenic | 50.0% | |
| AAATCCTGGTTTCTGCAGGG+TGG | + | tig0017534:2147-2166 | None:intergenic | 50.0% | |
| GTCTCAGAGAAGAGAAGCTC+TGG | - | tig0017534:2514-2533 | Msa1361520:intron | 50.0% | |
| GAAGGAGGAGGAACGACAAA+GGG | - | tig0017534:2547-2566 | Msa1361520:CDS | 50.0% | |
| TCGGAGACAGAAAGAAGAGG+CGG | - | tig0017534:2583-2602 | Msa1361520:CDS | 50.0% | |
| AGATTCTGGGTTCTGCAAGG+TGG | + | tig0017534:1980-1999 | None:intergenic | 50.0% | |
| CAGAGATTCTGGGTTCTGCA+AGG | + | tig0017534:1983-2002 | None:intergenic | 50.0% | |
| AAATCCTGGTTTCTGCAGGG+TGG | + | tig0017534:2147-2166 | None:intergenic | 50.0% | |
| GTCTCAGAGAAGAGAAGCTC+TGG | - | tig0017534:2514-2533 | Msa1361520:intron | 50.0% | |
| GAAGGAGGAGGAACGACAAA+GGG | - | tig0017534:2547-2566 | Msa1361520:CDS | 50.0% | |
| TCGGAGACAGAAAGAAGAGG+CGG | - | tig0017534:2583-2602 | Msa1361520:CDS | 50.0% | |
| ACGAACGGGGCAGAGATTCT+GGG | + | tig0017534:1993-2012 | None:intergenic | 55.0% | |
| TACGAACGGGGCAGAGATTC+TGG | + | tig0017534:1994-2013 | None:intergenic | 55.0% | |
| !! | GAGAAGCTCTGGAACTGCAG+AGG | - | tig0017534:2525-2544 | Msa1361520:CDS | 55.0% |
| !! | AGCTCTGGAACTGCAGAGGA+AGG | - | tig0017534:2529-2548 | Msa1361520:CDS | 55.0% |
| ! | TCTGGAACTGCAGAGGAAGG+AGG | - | tig0017534:2532-2551 | Msa1361520:CDS | 55.0% |
| GGAAGGAGGAGGAACGACAA+AGG | - | tig0017534:2546-2565 | Msa1361520:CDS | 55.0% | |
| GACAGAAAGAAGAGGCGGCT+CGG | - | tig0017534:2588-2607 | Msa1361520:CDS | 55.0% | |
| ACGAACGGGGCAGAGATTCT+GGG | + | tig0017534:1993-2012 | None:intergenic | 55.0% | |
| TACGAACGGGGCAGAGATTC+TGG | + | tig0017534:1994-2013 | None:intergenic | 55.0% | |
| !! | GAGAAGCTCTGGAACTGCAG+AGG | - | tig0017534:2525-2544 | Msa1361520:CDS | 55.0% |
| !! | AGCTCTGGAACTGCAGAGGA+AGG | - | tig0017534:2529-2548 | Msa1361520:CDS | 55.0% |
| ! | TCTGGAACTGCAGAGGAAGG+AGG | - | tig0017534:2532-2551 | Msa1361520:CDS | 55.0% |
| GGAAGGAGGAGGAACGACAA+AGG | - | tig0017534:2546-2565 | Msa1361520:CDS | 55.0% | |
| GACAGAAAGAAGAGGCGGCT+CGG | - | tig0017534:2588-2607 | Msa1361520:CDS | 55.0% | |
| GGAACTGCAGAGGAAGGAGG+AGG | - | tig0017534:2535-2554 | Msa1361520:CDS | 60.0% | |
| ! | GGCGGCTCGGAGAAAGAAGT+TGG | - | tig0017534:2601-2620 | Msa1361520:CDS | 60.0% |
| GGAACTGCAGAGGAAGGAGG+AGG | - | tig0017534:2535-2554 | Msa1361520:CDS | 60.0% | |
| ! | GGCGGCTCGGAGAAAGAAGT+TGG | - | tig0017534:2601-2620 | Msa1361520:CDS | 60.0% |
| TGCGCCACCCTGCAGAAACC+AGG | - | tig0017534:2140-2159 | Msa1361520:intron | 65.0% | |
| TGCGCCACCCTGCAGAAACC+AGG | - | tig0017534:2140-2159 | Msa1361520:intron | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| tig0017534 | gene | 1465 | 2854 | 1465 | ID=Msa1361520;Name=Msa1361520 |
| tig0017534 | mRNA | 1465 | 2854 | 1465 | ID=Msa1361520-mRNA-1;Parent=Msa1361520;Name=Msa1361520-mRNA-1;_AED=0.16;_eAED=0.16;_QI=0|0.5|0.66|0.66|1|1|3|157|163 |
| tig0017534 | exon | 1465 | 1873 | 1465 | ID=Msa1361520-mRNA-1:exon:12490;Parent=Msa1361520-mRNA-1 |
| tig0017534 | exon | 2521 | 2746 | 2521 | ID=Msa1361520-mRNA-1:exon:12489;Parent=Msa1361520-mRNA-1 |
| tig0017534 | exon | 2841 | 2854 | 2841 | ID=Msa1361520-mRNA-1:exon:12488;Parent=Msa1361520-mRNA-1 |
| tig0017534 | CDS | 2841 | 2854 | 2841 | ID=Msa1361520-mRNA-1:cds;Parent=Msa1361520-mRNA-1 |
| tig0017534 | CDS | 2521 | 2746 | 2521 | ID=Msa1361520-mRNA-1:cds;Parent=Msa1361520-mRNA-1 |
| tig0017534 | CDS | 1622 | 1873 | 1622 | ID=Msa1361520-mRNA-1:cds;Parent=Msa1361520-mRNA-1 |
| tig0017534 | three_prime_UTR | 1465 | 1621 | 1465 | ID=Msa1361520-mRNA-1:three_prime_utr;Parent=Msa1361520-mRNA-1 |
| Gene Sequence |
| Protein sequence |
