Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419310 | XP_003601186.1 | 98.726 | 157 | 2 | 0 | 1 | 157 | 196 | 352 | 5.18e-112 | 332 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419310 | sp|Q9ZQ31|STY13_ARATH | 42.169 | 83 | 45 | 2 | 11 | 91 | 303 | 384 | 5.66e-16 | 77.0 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419310 | G7J4R9 | 98.726 | 157 | 2 | 0 | 1 | 157 | 196 | 352 | 2.47e-112 | 332 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0054780 | Msa0419310 | 0.811690 | 6.172072e-51 | -8.615850e-47 |
| Msa0058210 | Msa0419310 | -0.806351 | 8.580931e-50 | -8.615850e-47 |
| Msa0376450 | Msa0419310 | -0.889303 | 2.734211e-73 | -8.615850e-47 |
| Msa0378490 | Msa0419310 | 0.820982 | 5.144600e-53 | -8.615850e-47 |
| Msa0419310 | Msa0425120 | -0.864476 | 1.183026e-64 | -8.615850e-47 |
| Msa0419310 | Msa0471720 | -0.889721 | 1.879949e-73 | -8.615850e-47 |
| Msa0419310 | Msa0516510 | -0.887281 | 1.637540e-72 | -8.615850e-47 |
| Msa0419310 | Msa0607210 | 0.802025 | 6.821749e-49 | -8.615850e-47 |
| Msa0419310 | Msa0746040 | -0.815311 | 9.867194e-52 | -8.615850e-47 |
| Msa0419310 | Msa0967650 | -0.890805 | 7.065839e-74 | -8.615850e-47 |
| Msa0419310 | Msa1245540 | 0.823373 | 1.434546e-53 | -8.615850e-47 |
| Msa0419310 | Msa1260130 | 0.822804 | 1.946662e-53 | -8.615850e-47 |
| Msa0419310 | Msa1336950 | 0.803531 | 3.335231e-49 | -8.615850e-47 |
| Msa0419310 | Msa1385770 | 0.810233 | 1.276499e-50 | -8.615850e-47 |
| Msa0419310 | Msa1403680 | 0.810319 | 1.222722e-50 | -8.615850e-47 |
| Msa0419310 | Msa1409240 | 0.809565 | 1.776954e-50 | -8.615850e-47 |
| Msa0419310 | Msa1434140 | 0.800182 | 1.624855e-48 | -8.615850e-47 |
| Msa0267970 | Msa0419310 | 0.806263 | 8.955945e-50 | -8.615850e-47 |
| Msa0352330 | Msa0419310 | 0.803415 | 3.524207e-49 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419310 | MtrunA17_Chr3g0116981 | 98.726 | 157 | 2 | 0 | 1 | 157 | 196 | 352 | 4.76e-116 | 332 |
| Msa0419310 | MtrunA17_Chr6g0449241 | 71.975 | 157 | 44 | 0 | 1 | 157 | 196 | 352 | 3.16e-84 | 251 |
| Msa0419310 | MtrunA17_Chr7g0244621 | 68.367 | 98 | 30 | 1 | 1 | 97 | 215 | 312 | 3.11e-42 | 144 |
| Msa0419310 | MtrunA17_Chr5g0403721 | 39.583 | 96 | 57 | 1 | 3 | 98 | 155 | 249 | 1.53e-20 | 86.3 |
| Msa0419310 | MtrunA17_Chr3g0143531 | 43.617 | 94 | 52 | 1 | 11 | 103 | 193 | 286 | 1.26e-19 | 82.8 |
| Msa0419310 | MtrunA17_Chr3g0090261 | 45.679 | 81 | 37 | 2 | 15 | 91 | 259 | 336 | 2.04e-17 | 77.8 |
| Msa0419310 | MtrunA17_Chr3g0117731 | 41.975 | 81 | 46 | 1 | 12 | 91 | 231 | 311 | 4.99e-17 | 76.6 |
| Msa0419310 | MtrunA17_Chr4g0059121 | 44.706 | 85 | 45 | 2 | 11 | 94 | 232 | 315 | 8.58e-17 | 75.9 |
| Msa0419310 | MtrunA17_Chr4g0047191 | 36.471 | 85 | 53 | 1 | 11 | 94 | 219 | 303 | 1.01e-15 | 72.8 |
| Msa0419310 | MtrunA17_Chr4g0047211 | 36.471 | 85 | 53 | 1 | 11 | 94 | 214 | 298 | 1.03e-15 | 72.8 |
| Msa0419310 | MtrunA17_Chr4g0047201 | 35.294 | 85 | 54 | 1 | 11 | 94 | 375 | 459 | 1.19e-15 | 73.2 |
| Msa0419310 | MtrunA17_Chr4g0075541 | 36.937 | 111 | 63 | 2 | 11 | 117 | 260 | 367 | 2.76e-15 | 71.6 |
| Msa0419310 | MtrunA17_Chr2g0282321 | 35.294 | 85 | 54 | 1 | 11 | 94 | 336 | 420 | 3.35e-15 | 71.6 |
| Msa0419310 | MtrunA17_Chr1g0211611 | 40.000 | 85 | 44 | 2 | 11 | 91 | 469 | 550 | 6.15e-15 | 71.2 |
| Msa0419310 | MtrunA17_Chr1g0151541 | 36.264 | 91 | 51 | 2 | 16 | 102 | 839 | 926 | 6.72e-14 | 68.2 |
| Msa0419310 | MtrunA17_Chr5g0406251 | 37.647 | 85 | 46 | 2 | 11 | 91 | 463 | 544 | 9.82e-14 | 67.8 |
| Msa0419310 | MtrunA17_Chr1g0191171 | 40.000 | 80 | 41 | 2 | 16 | 91 | 865 | 941 | 3.15e-13 | 66.2 |
| Msa0419310 | MtrunA17_Chr5g0427651 | 36.264 | 91 | 54 | 2 | 16 | 105 | 824 | 911 | 1.18e-12 | 64.7 |
| Msa0419310 | MtrunA17_Chr6g0482711 | 36.364 | 77 | 48 | 1 | 16 | 91 | 836 | 912 | 8.74e-12 | 62.0 |
| Msa0419310 | MtrunA17_Chr2g0294351 | 35.000 | 80 | 45 | 2 | 16 | 91 | 642 | 718 | 5.11e-11 | 59.7 |
| Msa0419310 | MtrunA17_Chr1g0205071 | 36.250 | 80 | 50 | 1 | 13 | 91 | 274 | 353 | 6.59e-11 | 59.3 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0419310 | AT5G50180.1 | 75.159 | 157 | 39 | 0 | 1 | 157 | 190 | 346 | 1.02e-84 | 252 |
| Msa0419310 | AT5G40540.3 | 68.987 | 158 | 42 | 3 | 1 | 152 | 99 | 255 | 4.86e-72 | 217 |
| Msa0419310 | AT5G40540.2 | 68.987 | 158 | 42 | 3 | 1 | 152 | 120 | 276 | 8.09e-72 | 217 |
| Msa0419310 | AT5G40540.1 | 68.987 | 158 | 42 | 3 | 1 | 152 | 196 | 352 | 7.75e-71 | 217 |
| Msa0419310 | AT3G27560.1 | 66.667 | 162 | 42 | 3 | 1 | 152 | 196 | 355 | 1.55e-68 | 211 |
| Msa0419310 | AT5G01850.1 | 69.565 | 92 | 27 | 1 | 1 | 91 | 188 | 279 | 4.78e-39 | 135 |
| Msa0419310 | AT5G01850.2 | 69.565 | 92 | 27 | 1 | 1 | 91 | 212 | 303 | 9.13e-39 | 135 |
| Msa0419310 | AT5G66710.1 | 51.908 | 131 | 57 | 3 | 1 | 131 | 241 | 365 | 1.11e-33 | 122 |
| Msa0419310 | AT5G40540.4 | 92.453 | 53 | 4 | 0 | 1 | 53 | 196 | 248 | 2.10e-29 | 108 |
| Msa0419310 | AT3G50730.1 | 42.424 | 99 | 57 | 0 | 1 | 99 | 206 | 304 | 1.84e-18 | 80.9 |
| Msa0419310 | AT3G50720.1 | 44.444 | 81 | 44 | 1 | 7 | 87 | 224 | 303 | 7.02e-18 | 79.3 |
| Msa0419310 | AT2G24360.1 | 42.169 | 83 | 45 | 2 | 11 | 91 | 303 | 384 | 5.75e-17 | 77.0 |
| Msa0419310 | AT4G31170.7 | 44.578 | 83 | 43 | 2 | 11 | 91 | 304 | 385 | 5.94e-17 | 77.0 |
| Msa0419310 | AT4G31170.6 | 44.578 | 83 | 43 | 2 | 11 | 91 | 304 | 385 | 5.94e-17 | 77.0 |
| Msa0419310 | AT4G31170.5 | 44.578 | 83 | 43 | 2 | 11 | 91 | 304 | 385 | 5.94e-17 | 77.0 |
| Msa0419310 | AT4G31170.1 | 44.578 | 83 | 43 | 2 | 11 | 91 | 304 | 385 | 5.94e-17 | 77.0 |
| Msa0419310 | AT4G31170.2 | 44.578 | 83 | 43 | 2 | 11 | 91 | 304 | 385 | 5.94e-17 | 77.0 |
| Msa0419310 | AT4G31170.3 | 44.578 | 83 | 43 | 2 | 11 | 91 | 304 | 385 | 5.94e-17 | 77.0 |
| Msa0419310 | AT4G31170.8 | 44.578 | 83 | 43 | 2 | 11 | 91 | 304 | 385 | 5.94e-17 | 77.0 |
| Msa0419310 | AT4G35780.1 | 40.860 | 93 | 48 | 2 | 11 | 99 | 460 | 549 | 8.03e-17 | 77.0 |
| Msa0419310 | AT1G62400.1 | 42.268 | 97 | 49 | 2 | 11 | 103 | 259 | 352 | 2.39e-16 | 75.1 |
| Msa0419310 | AT4G38470.2 | 40.860 | 93 | 48 | 2 | 11 | 99 | 458 | 547 | 4.71e-16 | 74.7 |
| Msa0419310 | AT4G38470.1 | 42.353 | 85 | 42 | 2 | 11 | 91 | 458 | 539 | 5.38e-16 | 74.3 |
| Msa0419310 | AT2G17700.1 | 38.710 | 93 | 50 | 2 | 11 | 99 | 454 | 543 | 3.20e-15 | 72.4 |
| Msa0419310 | AT5G58950.1 | 32.584 | 89 | 59 | 1 | 11 | 98 | 382 | 470 | 1.03e-14 | 70.9 |
| Msa0419310 | AT5G11850.1 | 38.961 | 77 | 46 | 1 | 16 | 91 | 785 | 861 | 7.25e-14 | 68.6 |
| Msa0419310 | AT1G08720.1 | 38.462 | 91 | 47 | 3 | 16 | 100 | 845 | 932 | 1.49e-13 | 67.4 |
| Msa0419310 | AT3G06640.2 | 36.782 | 87 | 50 | 3 | 16 | 98 | 622 | 707 | 8.48e-12 | 62.4 |
| Msa0419310 | AT3G06640.3 | 36.782 | 87 | 50 | 3 | 16 | 98 | 622 | 707 | 8.48e-12 | 62.4 |
| Msa0419310 | AT3G06640.1 | 36.782 | 87 | 50 | 3 | 16 | 98 | 622 | 707 | 9.73e-12 | 62.4 |
| Msa0419310 | AT3G06630.2 | 35.897 | 78 | 47 | 2 | 16 | 91 | 610 | 686 | 5.29e-11 | 60.1 |
Find 50 sgRNAs with CRISPR-Local
Find 57 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| AGCTATAAGCATCGACTTTA+TGG | 0.165014 | 3_2:+67234107 | None:intergenic |
| ATAGCTTTGCAATCGTATTT+TGG | 0.171547 | 3_2:-67234090 | Msa0419310:CDS |
| CCCTGGTACGAGCTCCTTAA+TGG | 0.231520 | 3_2:-67233699 | Msa0419310:CDS |
| AAACGGTGTAAAGATAATTT+AGG | 0.320150 | 3_2:+67233789 | None:intergenic |
| GAGCTCGTACCAGGGGATTC+TGG | 0.324358 | 3_2:+67233707 | None:intergenic |
| AAAGATAATTTAGGAGCATT+TGG | 0.328831 | 3_2:+67233798 | None:intergenic |
| TGCATATGCTGCAGCCTTCA+AGG | 0.343559 | 3_2:-67234017 | Msa0419310:intron |
| GCCATTAAGGAGCTCGTACC+AGG | 0.351285 | 3_2:+67233698 | None:intergenic |
| ATGATCTTAGATTACCTTGA+AGG | 0.387995 | 3_2:+67234003 | None:intergenic |
| AGGATTACAGCCAATTCTTC+GGG | 0.389095 | 3_2:+67233875 | None:intergenic |
| AAGGATTACAGCCAATTCTT+CGG | 0.394234 | 3_2:+67233874 | None:intergenic |
| CTGCAGCATATGCAGCTTGA+AGG | 0.405495 | 3_2:+67234026 | None:intergenic |
| TCAGAAGTGAATATTCTTGA+AGG | 0.408905 | 3_2:+67233746 | None:intergenic |
| AATATTCTTGAAGGAATTGC+AGG | 0.414396 | 3_2:+67233755 | None:intergenic |
| GGATCATCTTCCCGAAGAAT+TGG | 0.421850 | 3_2:-67233885 | Msa0419310:CDS |
| CAGGTCTTTAAAGTACAAAA+TGG | 0.434675 | 3_2:-67233579 | Msa0419310:three_prime_UTR |
| AGTGTTATTAACTCTTGAAC+AGG | 0.442073 | 3_2:-67233598 | Msa0419310:exon |
| TTGGATTATCTGTGTGAAGT+TGG | 0.454844 | 3_2:+67233817 | None:intergenic |
| TTGATTTCGTCCTTTACTCT+AGG | 0.464060 | 3_2:+67233650 | None:intergenic |
| TGGATTATCTGTGTGAAGTT+GGG | 0.483999 | 3_2:+67233818 | None:intergenic |
| AAACAGCAAAGGAAACCATT+AGG | 0.491144 | 3_2:+67233626 | None:intergenic |
| ACATAGAATCTTGTCTAAAG+AGG | 0.497706 | 3_2:-67233539 | Msa0419310:three_prime_UTR |
| CCTCTTGCCAGCATGAAGTA+AGG | 0.498570 | 3_2:+67233855 | None:intergenic |
| CACAACAAAGTTCCTTTCGA+AGG | 0.499101 | 3_2:-67234058 | Msa0419310:CDS |
| AAGGACGAAATCAAGCCTAA+TGG | 0.501353 | 3_2:-67233641 | Msa0419310:CDS |
| CTGTAATCCTTACTTCATGC+TGG | 0.522064 | 3_2:-67233862 | Msa0419310:CDS |
| GTACTGTCACACTGAGGCAA+GGG | 0.522922 | 3_2:-67234147 | Msa0419310:CDS |
| CTTGAAGGAATTGCAGGTGT+AGG | 0.530115 | 3_2:+67233761 | None:intergenic |
| TATCTGTGTGAAGTTGGGTC+GGG | 0.549535 | 3_2:+67233823 | None:intergenic |
| TGCAGGTGTAGGAGGCGAAA+CGG | 0.551922 | 3_2:+67233772 | None:intergenic |
| GAAGGAATTGCAGGTGTAGG+AGG | 0.556650 | 3_2:+67233764 | None:intergenic |
| CATAGAATCTTGTCTAAAGA+GGG | 0.557072 | 3_2:-67233538 | Msa0419310:three_prime_UTR |
| CGGCGATACACCTAGAGTAA+AGG | 0.566162 | 3_2:-67233660 | Msa0419310:CDS |
| TTATCTGTGTGAAGTTGGGT+CGG | 0.573170 | 3_2:+67233822 | None:intergenic |
| AGGTTTGACATGCCTTCGAA+AGG | 0.577484 | 3_2:+67234046 | None:intergenic |
| ATGGCAAAACGTGATGACAC+CGG | 0.589230 | 3_2:-67233680 | Msa0419310:CDS |
| CCATTAAGGAGCTCGTACCA+GGG | 0.592520 | 3_2:+67233699 | None:intergenic |
| AGTACTGTCACACTGAGGCA+AGG | 0.598182 | 3_2:-67234148 | Msa0419310:CDS |
| CCTTACTTCATGCTGGCAAG+AGG | 0.616813 | 3_2:-67233855 | Msa0419310:CDS |
| AACACTGGCTGAAACAGCAA+AGG | 0.617534 | 3_2:+67233615 | None:intergenic |
| CTTTACTCTAGGTGTATCGC+CGG | 0.619229 | 3_2:+67233661 | None:intergenic |
| TACTGTCACACTGAGGCAAG+GGG | 0.631225 | 3_2:-67234146 | Msa0419310:CDS |
| CATTAAGGAGCTCGTACCAG+GGG | 0.631355 | 3_2:+67233700 | None:intergenic |
| TCGGGAAGATGATCCGCACT+CGG | 0.635028 | 3_2:+67233893 | None:intergenic |
| TTAGAATGTAAGGCCGAGTG+CGG | 0.636499 | 3_2:-67233906 | Msa0419310:intron |
| GTGTTGCCACCAGAATCCCC+TGG | 0.645611 | 3_2:-67233716 | Msa0419310:CDS |
| TGTTCAAGAGTTAATAACAC+TGG | 0.654358 | 3_2:+67233600 | None:intergenic |
| CTCGTACCAGGGGATTCTGG+TGG | 0.665696 | 3_2:+67233710 | None:intergenic |
| AGGGGATTCTGGTGGCAACA+CGG | 0.676571 | 3_2:+67233718 | None:intergenic |
| TATACAGTACTGTCACACTG+AGG | 0.785024 | 3_2:-67234153 | Msa0419310:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | CTTTTGGTTTTTAGAATGTA+AGG | - | chr3_2:67233717-67233736 | Msa0419310:CDS | 25.0% |
| !!! | AAAGATAATTTAGGAGCATT+TGG | + | chr3_2:67233838-67233857 | None:intergenic | 25.0% |
| ! | AAACGGTGTAAAGATAATTT+AGG | + | chr3_2:67233847-67233866 | None:intergenic | 25.0% |
| ! | ATTTACCAAGTCATCAAAAA+AGG | + | chr3_2:67234123-67234142 | None:intergenic | 25.0% |
| !! | ATAGCTTTGCAATCGTATTT+TGG | - | chr3_2:67233543-67233562 | Msa0419310:three_prime_UTR | 30.0% |
| !! | TAGCTTTGCAATCGTATTTT+GGG | - | chr3_2:67233544-67233563 | Msa0419310:three_prime_UTR | 30.0% |
| ATGATCTTAGATTACCTTGA+AGG | + | chr3_2:67233633-67233652 | None:intergenic | 30.0% | |
| AATATTCTTGAAGGAATTGC+AGG | + | chr3_2:67233881-67233900 | None:intergenic | 30.0% | |
| TCAGAAGTGAATATTCTTGA+AGG | + | chr3_2:67233890-67233909 | None:intergenic | 30.0% | |
| TGTTCAAGAGTTAATAACAC+TGG | + | chr3_2:67234036-67234055 | None:intergenic | 30.0% | |
| ! | AGTGTTATTAACTCTTGAAC+AGG | - | chr3_2:67234035-67234054 | Msa0419310:CDS | 30.0% |
| !! | CAGGTCTTTAAAGTACAAAA+TGG | - | chr3_2:67234054-67234073 | Msa0419310:CDS | 30.0% |
| ACATAGAATCTTGTCTAAAG+AGG | - | chr3_2:67234094-67234113 | Msa0419310:CDS | 30.0% | |
| CATAGAATCTTGTCTAAAGA+GGG | - | chr3_2:67234095-67234114 | Msa0419310:CDS | 30.0% | |
| !! | AGCTATAAGCATCGACTTTA+TGG | + | chr3_2:67233529-67233548 | None:intergenic | 35.0% |
| AAGGATTACAGCCAATTCTT+CGG | + | chr3_2:67233762-67233781 | None:intergenic | 35.0% | |
| TGGATTATCTGTGTGAAGTT+GGG | + | chr3_2:67233818-67233837 | None:intergenic | 35.0% | |
| TTGGATTATCTGTGTGAAGT+TGG | + | chr3_2:67233819-67233838 | None:intergenic | 35.0% | |
| TTGATTTCGTCCTTTACTCT+AGG | + | chr3_2:67233986-67234005 | None:intergenic | 35.0% | |
| AAACAGCAAAGGAAACCATT+AGG | + | chr3_2:67234010-67234029 | None:intergenic | 35.0% | |
| TATACAGTACTGTCACACTG+AGG | - | chr3_2:67233480-67233499 | Msa0419310:three_prime_UTR | 40.0% | |
| CACAACAAAGTTCCTTTCGA+AGG | - | chr3_2:67233575-67233594 | Msa0419310:three_prime_UTR | 40.0% | |
| AGGATTACAGCCAATTCTTC+GGG | + | chr3_2:67233761-67233780 | None:intergenic | 40.0% | |
| CTGTAATCCTTACTTCATGC+TGG | - | chr3_2:67233771-67233790 | Msa0419310:CDS | 40.0% | |
| TTATCTGTGTGAAGTTGGGT+CGG | + | chr3_2:67233814-67233833 | None:intergenic | 40.0% | |
| ! | GTCATCACGTTTTGCCATTA+AGG | + | chr3_2:67233951-67233970 | None:intergenic | 40.0% |
| AAGGACGAAATCAAGCCTAA+TGG | - | chr3_2:67233992-67234011 | Msa0419310:intron | 40.0% | |
| !!! | GGGATCCTTTTTTGATGACT+TGG | - | chr3_2:67234115-67234134 | Msa0419310:CDS | 40.0% |
| AGGTTTGACATGCCTTCGAA+AGG | + | chr3_2:67233590-67233609 | None:intergenic | 45.0% | |
| ! | CGCGTGTCAACAGTTTTTGA+CGG | + | chr3_2:67233696-67233715 | None:intergenic | 45.0% |
| ! | AACTGTTGACACGCGTCTTT+TGG | - | chr3_2:67233701-67233720 | Msa0419310:CDS | 45.0% |
| TTAGAATGTAAGGCCGAGTG+CGG | - | chr3_2:67233727-67233746 | Msa0419310:CDS | 45.0% | |
| GGATCATCTTCCCGAAGAAT+TGG | - | chr3_2:67233748-67233767 | Msa0419310:CDS | 45.0% | |
| TATCTGTGTGAAGTTGGGTC+GGG | + | chr3_2:67233813-67233832 | None:intergenic | 45.0% | |
| CTTGAAGGAATTGCAGGTGT+AGG | + | chr3_2:67233875-67233894 | None:intergenic | 45.0% | |
| ATGGCAAAACGTGATGACAC+CGG | - | chr3_2:67233953-67233972 | Msa0419310:intron | 45.0% | |
| CTTTACTCTAGGTGTATCGC+CGG | + | chr3_2:67233975-67233994 | None:intergenic | 45.0% | |
| ! | AACACTGGCTGAAACAGCAA+AGG | + | chr3_2:67234021-67234040 | None:intergenic | 45.0% |
| AGTACTGTCACACTGAGGCA+AGG | - | chr3_2:67233485-67233504 | Msa0419310:three_prime_UTR | 50.0% | |
| GTACTGTCACACTGAGGCAA+GGG | - | chr3_2:67233486-67233505 | Msa0419310:three_prime_UTR | 50.0% | |
| TACTGTCACACTGAGGCAAG+GGG | - | chr3_2:67233487-67233506 | Msa0419310:three_prime_UTR | 50.0% | |
| CTGCAGCATATGCAGCTTGA+AGG | + | chr3_2:67233610-67233629 | None:intergenic | 50.0% | |
| TGCATATGCTGCAGCCTTCA+AGG | - | chr3_2:67233616-67233635 | Msa0419310:CDS | 50.0% | |
| CCTCTTGCCAGCATGAAGTA+AGG | + | chr3_2:67233781-67233800 | None:intergenic | 50.0% | |
| CCTTACTTCATGCTGGCAAG+AGG | - | chr3_2:67233778-67233797 | Msa0419310:CDS | 50.0% | |
| GAAGGAATTGCAGGTGTAGG+AGG | + | chr3_2:67233872-67233891 | None:intergenic | 50.0% | |
| CATTAAGGAGCTCGTACCAG+GGG | + | chr3_2:67233936-67233955 | None:intergenic | 50.0% | |
| CCATTAAGGAGCTCGTACCA+GGG | + | chr3_2:67233937-67233956 | None:intergenic | 50.0% | |
| CGGCGATACACCTAGAGTAA+AGG | - | chr3_2:67233973-67233992 | Msa0419310:intron | 50.0% | |
| TCGGGAAGATGATCCGCACT+CGG | + | chr3_2:67233743-67233762 | None:intergenic | 55.0% | |
| TGCAGGTGTAGGAGGCGAAA+CGG | + | chr3_2:67233864-67233883 | None:intergenic | 55.0% | |
| AGGGGATTCTGGTGGCAACA+CGG | + | chr3_2:67233918-67233937 | None:intergenic | 55.0% | |
| CCCTGGTACGAGCTCCTTAA+TGG | - | chr3_2:67233934-67233953 | Msa0419310:intron | 55.0% | |
| GCCATTAAGGAGCTCGTACC+AGG | + | chr3_2:67233938-67233957 | None:intergenic | 55.0% | |
| GTGTTGCCACCAGAATCCCC+TGG | - | chr3_2:67233917-67233936 | Msa0419310:intron | 60.0% | |
| CTCGTACCAGGGGATTCTGG+TGG | + | chr3_2:67233926-67233945 | None:intergenic | 60.0% | |
| GAGCTCGTACCAGGGGATTC+TGG | + | chr3_2:67233929-67233948 | None:intergenic | 60.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr3_2 | gene | 67233479 | 67234176 | 67233479 | ID=Msa0419310;Name=Msa0419310 |
| chr3_2 | mRNA | 67233479 | 67234176 | 67233479 | ID=Msa0419310-mRNA-1;Parent=Msa0419310;Name=Msa0419310-mRNA-1;_AED=0.07;_eAED=0.07;_QI=0|1|0.5|1|1|1|2|131|157 |
| chr3_2 | exon | 67233479 | 67233924 | 67233479 | ID=Msa0419310-mRNA-1:exon:15622;Parent=Msa0419310-mRNA-1 |
| chr3_2 | exon | 67234018 | 67234176 | 67234018 | ID=Msa0419310-mRNA-1:exon:15621;Parent=Msa0419310-mRNA-1 |
| chr3_2 | CDS | 67234018 | 67234176 | 67234018 | ID=Msa0419310-mRNA-1:cds;Parent=Msa0419310-mRNA-1 |
| chr3_2 | CDS | 67233610 | 67233924 | 67233610 | ID=Msa0419310-mRNA-1:cds;Parent=Msa0419310-mRNA-1 |
| chr3_2 | three_prime_UTR | 67233479 | 67233609 | 67233479 | ID=Msa0419310-mRNA-1:three_prime_utr;Parent=Msa0419310-mRNA-1 |
| Gene Sequence |
| Protein sequence |
