AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0178840

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178840 MtrunA17_Chr1g0208721 96.633 297 7 1 1 297 1 294 0.0 581
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0178840 AT1G15140.1 70.732 287 77 3 16 297 11 295 2.07e-142 403
Msa0178840 AT1G15140.2 69.583 240 66 3 16 250 11 248 1.52e-113 329
Msa0178840 AT1G15140.3 69.583 240 66 3 16 250 11 248 1.52e-113 329

Find 144 sgRNAs with CRISPR-Local

Find 321 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCATTCTCTTCAGGTTTC+TGG 0.108389 1_4:+66282188 None:intergenic
TTCTGACCAAAATGGAATTT+TGG 0.144657 1_4:-66280738 Msa0178840:exon
GAATGTAAAATAAACAATTT+TGG 0.174190 1_4:-66280658 Msa0178840:three_prime_UTR
TATCAGGGATCTACAGTTTA+AGG 0.189359 1_4:+66280317 None:intergenic
ATTACAGATGCCAATTTATC+AGG 0.202510 1_4:+66280301 None:intergenic
ATCGACCCACCCGAGAAATT+TGG 0.234673 1_4:-66283767 Msa0178840:CDS
CCTGAAGAGAATGGCTTATC+AGG 0.258718 1_4:-66282181 Msa0178840:intron
ACAATGCCAAAATTCCATTT+TGG 0.260562 1_4:+66280732 None:intergenic
TGTTGAGCTTAGTCCGGTTA+TGG 0.301742 1_4:-66283813 Msa0178840:CDS
CCTGATAAGCCATTCTCTTC+AGG 0.302056 1_4:+66282181 None:intergenic
TAAAGAACTTCTGACCAAAA+TGG 0.311227 1_4:-66280746 Msa0178840:exon
ACTGTAGATCCCTGATAAAT+TGG 0.328093 1_4:-66280311 Msa0178840:three_prime_UTR
TTGCCACTGGATCCGGAATT+AGG 0.330537 1_4:-66283730 Msa0178840:intron
GTGTGAGACGTGGCAAGGTC+AGG 0.331915 1_4:+66284007 None:intergenic
TTATTATTTGGTGATGAGTT+TGG 0.332009 1_4:+66284293 None:intergenic
CTTGTCTTTGCCACTGGATC+CGG 0.337767 1_4:-66283737 Msa0178840:CDS
AATATATTGACACAAACTTA+TGG 0.348143 1_4:-66280482 Msa0178840:three_prime_UTR
ACGTGTCAAACCTTTCTTGA+TGG 0.351331 1_4:+66284404 None:intergenic
TGTTTGATAAAATACGCTTT+AGG 0.369792 1_4:+66284347 None:intergenic
GTTGAGCTTAGTCCGGTTAT+GGG 0.374160 1_4:-66283812 Msa0178840:CDS
CTTAGTCCGGTTATGGGGAA+TGG 0.384177 1_4:-66283806 Msa0178840:CDS
TTATCCAACCCTTTGTCAAC+TGG 0.387952 1_4:-66281872 Msa0178840:CDS
TCTTGATGGTCCGATAGAAT+TGG 0.389250 1_4:+66284418 None:intergenic
ACTGTTCTTGTCTTTGCCAC+TGG 0.391138 1_4:-66283743 Msa0178840:CDS
ATCAGGGATCTACAGTTTAA+GGG 0.392229 1_4:+66280318 None:intergenic
TATAGGAGAGATTTAAAGAC+TGG 0.394111 1_4:-66282080 Msa0178840:intron
CTAATACAACGTGTTTAAAC+AGG 0.404090 1_4:+66280398 None:intergenic
ATTCGGTCACTTATTGAGTC+AGG 0.405073 1_4:-66282255 Msa0178840:CDS
GGCTAAAGTGCGCATGGGAG+TGG 0.410046 1_4:+66284221 None:intergenic
TCAACTGGTGCTGTACTTTG+TGG 0.414186 1_4:-66281857 Msa0178840:CDS
TTTAAAGACTGGGAATCTTC+CGG 0.416173 1_4:-66282069 Msa0178840:CDS
CGTTGTGTGGGTTGAAGAAA+GGG 0.418149 1_4:-66283841 Msa0178840:CDS
GCGTTGTGTGGGTTGAAGAA+AGG 0.428547 1_4:-66283842 Msa0178840:CDS
CGTAGGATGGACATGGGAAA+GGG 0.429123 1_4:+66284193 None:intergenic
GGCAGAAACTGACCTAATTC+CGG 0.434711 1_4:+66283718 None:intergenic
TCGATCTCGGAGAGAGGAGC+TGG 0.438598 1_4:+66284079 None:intergenic
ACATCTATTCTTGTTGCTGA+TGG 0.438700 1_4:-66280789 Msa0178840:CDS
TCAAACCCATTCCCCATAAC+CGG 0.441227 1_4:+66283800 None:intergenic
CAACTGGTGCTGTACTTTGT+GGG 0.442180 1_4:-66281856 Msa0178840:CDS
TTGACGTACGGCGGCGGAAA+GGG 0.449809 1_4:+66284120 None:intergenic
GACTCAATAAGTGACCGAAT+TGG 0.449902 1_4:+66282258 None:intergenic
CTTGACGTACGGCGGCGGAA+AGG 0.459299 1_4:+66284119 None:intergenic
TGACGGAGACGGTGGTTGGT+GGG 0.462815 1_4:+66284154 None:intergenic
TCTCCAGTCCAACTATCATC+TGG 0.464149 1_4:+66282018 None:intergenic
GTCGGAAGTGGCGGCAGGAG+GGG 0.468552 1_4:+66284321 None:intergenic
GCGTAGGATGGACATGGGAA+AGG 0.470876 1_4:+66284192 None:intergenic
GTGACGGAGACGGTGGTTGG+TGG 0.471139 1_4:+66284153 None:intergenic
GAGTCGGAAGTGGCGGCAGG+AGG 0.474111 1_4:+66284319 None:intergenic
ATAGCAAGAAACGACGGTTT+CGG 0.475246 1_4:+66283944 None:intergenic
GGTGCGTATTGTATAATTGA+GGG 0.478156 1_4:+66284368 None:intergenic
TACGTCAAGACACCACCGTC+TGG 0.479107 1_4:-66284105 Msa0178840:CDS
GTAGGATGGACATGGGAAAG+GGG 0.482435 1_4:+66284194 None:intergenic
TGTGAGACGTGGCAAGGTCA+GGG 0.483409 1_4:+66284008 None:intergenic
TTAGTCCGGTTATGGGGAAT+GGG 0.485622 1_4:-66283805 Msa0178840:CDS
AGGTGCGTATTGTATAATTG+AGG 0.488520 1_4:+66284367 None:intergenic
GAGTGGAGGGTAAGAGGATG+AGG 0.493794 1_4:+66284238 None:intergenic
CGTGGCAAGGTCAGGGGCGT+CGG 0.495943 1_4:+66284015 None:intergenic
TTCTATCGGACCATCAAGAA+AGG 0.498583 1_4:-66284414 Msa0178840:five_prime_UTR
GGATGTTGTTGAGCTTAGTC+CGG 0.502498 1_4:-66283819 Msa0178840:CDS
TAGGATGGACATGGGAAAGG+GGG 0.503705 1_4:+66284195 None:intergenic
AAGAACAGTTCCAAATTTCT+CGG 0.503898 1_4:+66283757 None:intergenic
TGTCTCAACCAGATGATAGT+TGG 0.504609 1_4:-66282026 Msa0178840:CDS
GACGGAGACGGTGGTTGGTG+GGG 0.509831 1_4:+66284155 None:intergenic
TTATTGTGTGCAGTCCAATT+CGG 0.511671 1_4:-66282272 Msa0178840:intron
TGGAGAAAGTGGCTTTGTAC+AGG 0.512190 1_4:-66282001 Msa0178840:intron
TCAGAGTCGGAAGTGGCGGC+AGG 0.512965 1_4:+66284316 None:intergenic
CAACCAGATGATAGTTGGAC+TGG 0.517272 1_4:-66282021 Msa0178840:CDS
ATTGAGTCAGGATTTGATGC+TGG 0.518551 1_4:-66282243 Msa0178840:CDS
AGAACAGTTCCAAATTTCTC+GGG 0.523438 1_4:+66283758 None:intergenic
GGAAGTGGCGGCAGGAGGGG+CGG 0.523885 1_4:+66284324 None:intergenic
GGGTGGGGCTAAAGTGCGCA+TGG 0.524410 1_4:+66284215 None:intergenic
AGTCGGAAGTGGCGGCAGGA+GGG 0.524838 1_4:+66284320 None:intergenic
GGTTTAGATTGAAGCGGCGT+AGG 0.525093 1_4:+66284176 None:intergenic
GCATGGGAGTGGAGGGTAAG+AGG 0.525884 1_4:+66284232 None:intergenic
TAAAGTGCGCATGGGAGTGG+AGG 0.532726 1_4:+66284224 None:intergenic
ATCTTCCACTCCAATTCTAT+CGG 0.539225 1_4:-66284428 Msa0178840:five_prime_UTR
TGTATAATTGAGGGTTATCA+CGG 0.542709 1_4:+66284377 None:intergenic
GACGGTGGTGTCTTGACGTA+CGG 0.543425 1_4:+66284108 None:intergenic
GATAGTTGGACTGGAGAAAG+TGG 0.543932 1_4:-66282012 Msa0178840:CDS
GGTGTCTTGACGTACGGCGG+CGG 0.544339 1_4:+66284114 None:intergenic
TCCACTGCAGAAGCGTTGTG+TGG 0.545176 1_4:-66283854 Msa0178840:CDS
GTGTCTATGACTGCACACTC+TGG 0.549427 1_4:-66280557 Msa0178840:three_prime_UTR
TAGATTGAAGCGGCGTAGGA+TGG 0.550133 1_4:+66284180 None:intergenic
GATGAGGCGGTGTTAATGAA+AGG 0.551705 1_4:+66284254 None:intergenic
AAAGGGTTGCGAGTCGGTGA+CGG 0.551990 1_4:+66284137 None:intergenic
GGCCAGAAACCTGAAGAGAA+TGG 0.557359 1_4:-66282190 Msa0178840:CDS
TTGCGAGTCGGTGACGGAGA+CGG 0.557465 1_4:+66284143 None:intergenic
AGGGGCGTCGGAAACGTCGA+TGG 0.558624 1_4:+66284027 None:intergenic
ACAGTTCCAAATTTCTCGGG+TGG 0.560614 1_4:+66283761 None:intergenic
GGAATGGGTTTGATATTAGT+CGG 0.561988 1_4:-66283790 Msa0178840:CDS
CTCAGCGGCAGGTTCGATCT+CGG 0.562464 1_4:+66284066 None:intergenic
CGCGTGTGTGAGACGTGGCA+AGG 0.563503 1_4:+66284002 None:intergenic
TCGGTGACGGAGACGGTGGT+TGG 0.563811 1_4:+66284150 None:intergenic
CTCTTAATCGCAAGCTTCGG+CGG 0.564323 1_4:+66283914 None:intergenic
GTGATGAGTTTGGTCAGAGT+CGG 0.570585 1_4:+66284303 None:intergenic
TGGAAGAGTGACTCAGCGGC+AGG 0.570715 1_4:+66284055 None:intergenic
GTACAGCACCAGTTGACAAA+GGG 0.571677 1_4:+66281864 None:intergenic
GAGAGGAGCTGGAGTCCAGA+CGG 0.574346 1_4:+66284090 None:intergenic
TTACAGATGCCAATTTATCA+GGG 0.577062 1_4:+66280302 None:intergenic
GGTGGGGCTAAAGTGCGCAT+GGG 0.577657 1_4:+66284216 None:intergenic
TCATCTGGTTGAGACAATAC+AGG 0.579533 1_4:+66282033 None:intergenic
TTGAGCTTAGTCCGGTTATG+GGG 0.580245 1_4:-66283811 Msa0178840:CDS
CAGTTCCAAATTTCTCGGGT+GGG 0.584521 1_4:+66283762 None:intergenic
CCACTCTTAATCGCAAGCTT+CGG 0.586640 1_4:+66283911 None:intergenic
GTGAGACGTGGCAAGGTCAG+GGG 0.594184 1_4:+66284009 None:intergenic
CCCACACAACGCTTCTGCAG+TGG 0.596333 1_4:+66283853 None:intergenic
AGTTTGGTCAGAGTCGGAAG+TGG 0.597586 1_4:+66284309 None:intergenic
TGGTGGGGTTTAGATTGAAG+CGG 0.600108 1_4:+66284170 None:intergenic
GAAGCGGCGTAGGATGGACA+TGG 0.600277 1_4:+66284186 None:intergenic
AGCACCAGTTGACAAAGGGT+TGG 0.602600 1_4:+66281868 None:intergenic
TTGGTCAGAGTCGGAAGTGG+CGG 0.603781 1_4:+66284312 None:intergenic
AGTACAGCACCAGTTGACAA+AGG 0.607829 1_4:+66281863 None:intergenic
TTTGAATTATGCCTTTGCTG+AGG 0.608362 1_4:-66280699 Msa0178840:three_prime_UTR
GCAGGTTCGATCTCGGAGAG+AGG 0.610044 1_4:+66284073 None:intergenic
CCGAAGCTTGCGATTAAGAG+TGG 0.610290 1_4:-66283911 Msa0178840:CDS
CCACTGCAGAAGCGTTGTGT+GGG 0.619285 1_4:-66283853 Msa0178840:CDS
AGGAGCTGGAGTCCAGACGG+TGG 0.619490 1_4:+66284093 None:intergenic
CAGTATCTTCAGCTTAAAGT+CGG 0.619863 1_4:-66283974 Msa0178840:CDS
GCCACGTCTCACACACGCGC+CGG 0.620260 1_4:-66283998 Msa0178840:CDS
CGGCGGAAAGGGTTGCGAGT+CGG 0.621174 1_4:+66284131 None:intergenic
CAGGATTTGATGCTGGCAAG+AGG 0.625026 1_4:-66282236 Msa0178840:CDS
AAAGTGCGCATGGGAGTGGA+GGG 0.625677 1_4:+66284225 None:intergenic
ATGGTCCGATAGAATTGGAG+TGG 0.627347 1_4:+66284423 None:intergenic
TGACCTAATTCCGGATCCAG+TGG 0.627958 1_4:+66283727 None:intergenic
TGGAGGGTAAGAGGATGAGG+CGG 0.630907 1_4:+66284241 None:intergenic
AGATGTTTGATCCTCAGCAA+AGG 0.639485 1_4:+66280688 None:intergenic
ATAGGAGAGATTTAAAGACT+GGG 0.643444 1_4:-66282079 Msa0178840:intron
TTTAAGCTGAAGATACTGAC+CGG 0.649623 1_4:+66283979 None:intergenic
CGGAAACGTCGATGGAAACG+TGG 0.650313 1_4:+66284035 None:intergenic
GGCTGCATATACGAGAGCAA+AGG 0.651480 1_4:-66281897 Msa0178840:CDS
TACAGGTACAATCTTGACAC+CGG 0.656089 1_4:+66282050 None:intergenic
GAGGATCAAACATCTCAGCA+TGG 0.667075 1_4:-66280680 Msa0178840:three_prime_UTR
ATCAAGAAAGGTTTGACACG+TGG 0.669419 1_4:-66284402 Msa0178840:five_prime_UTR
CGAGTCGGTGACGGAGACGG+TGG 0.672480 1_4:+66284146 None:intergenic
GTTGTGTGGGTTGAAGAAAG+GGG 0.680851 1_4:-66283840 Msa0178840:CDS
GAAACTATGCATTATCAGAG+AGG 0.691201 1_4:-66280513 Msa0178840:three_prime_UTR
AAGCGGCGTAGGATGGACAT+GGG 0.692247 1_4:+66284187 None:intergenic
AGATGTCTTAGAAAAGTGAG+TGG 0.694735 1_4:+66284454 None:intergenic
AGGGATCTACAGTTTAAGGG+AGG 0.698588 1_4:+66280321 None:intergenic
ACCGGCGCGTGTGTGAGACG+TGG 0.704486 1_4:+66283997 None:intergenic
GGTGGTGTCTTGACGTACGG+CGG 0.712276 1_4:+66284111 None:intergenic
AACGTGGAAGAGTGACTCAG+CGG 0.719906 1_4:+66284051 None:intergenic
GAAGCGATAGCAAGAAACGA+CGG 0.765356 1_4:+66283938 None:intergenic
TGGGCAGAAACAGATGACTG+AGG 0.793337 1_4:-66281837 Msa0178840:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!! CTAATAATACATATATATAT+AGG + chr1_4:66281386-66281405 None:intergenic 10.0%
!!! TAAAATTTAAAACAATCAAA+AGG - chr1_4:66283130-66283149 Msa0178840:intron 10.0%
!!! ACATGTTAACTTTTATTATT+TGG + chr1_4:66280422-66280441 None:intergenic 15.0%
!!! TTATTTTCCAAAATTTGATT+TGG - chr1_4:66281041-66281060 Msa0178840:intron 15.0%
!!! ACAATTTTCTTTTATGTTAT+AGG - chr1_4:66282603-66282622 Msa0178840:intron 15.0%
!! AACTACATTATTCAAAAATA+GGG - chr1_4:66283292-66283311 Msa0178840:intron 15.0%
!! ATATATCAATAAAAGAACAA+AGG + chr1_4:66283699-66283718 None:intergenic 15.0%
!! ATAATAACATTGATATTGAA+AGG + chr1_4:66283880-66283899 None:intergenic 15.0%
!!! GAATGTAAAATAAACAATTT+TGG - chr1_4:66284042-66284061 Msa0178840:CDS 15.0%
!!! AACATTTTTTTATCGTAAAA+AGG - chr1_4:66284335-66284354 Msa0178840:five_prime_UTR 15.0%
!! TTAATACTGACAATTATACA+AGG + chr1_4:66281169-66281188 None:intergenic 20.0%
!! TTGTATAATTGTCAGTATTA+AGG - chr1_4:66281168-66281187 Msa0178840:intron 20.0%
!! AACATCGAATCAATATATTT+AGG - chr1_4:66281641-66281660 Msa0178840:intron 20.0%
!! ACATCGAATCAATATATTTA+GGG - chr1_4:66281642-66281661 Msa0178840:intron 20.0%
!! AAAGAATTGTGTACTTAATA+GGG + chr1_4:66281895-66281914 None:intergenic 20.0%
!! AAAAGAATTGTGTACTTAAT+AGG + chr1_4:66281896-66281915 None:intergenic 20.0%
!!! ATTCTTTTTCACTTATATCA+TGG - chr1_4:66281908-66281927 Msa0178840:intron 20.0%
!! CAAAAATATCTATATTCGAA+AGG + chr1_4:66282029-66282048 None:intergenic 20.0%
!!! CTTTCGAATATAGATATTTT+TGG - chr1_4:66282027-66282046 Msa0178840:CDS 20.0%
!! ACAATATTATCCTTAGAAAA+AGG + chr1_4:66282162-66282181 None:intergenic 20.0%
!! CAACTACATTATTCAAAAAT+AGG - chr1_4:66283291-66283310 Msa0178840:intron 20.0%
!! AATATCAATGTTATTATTGC+AGG - chr1_4:66283883-66283902 Msa0178840:CDS 20.0%
!!! TTTTTTAAGAAAAAAGGTGT+GGG + chr1_4:66284115-66284134 None:intergenic 20.0%
!!! TTTTTTTAAGAAAAAAGGTG+TGG + chr1_4:66284116-66284135 None:intergenic 20.0%
!!! CCAACTTTTTTTAAGAAAAA+AGG + chr1_4:66284121-66284140 None:intergenic 20.0%
!!! CCTTTTTTCTTAAAAAAAGT+TGG - chr1_4:66284118-66284137 Msa0178840:CDS 20.0%
!! AATATATTGACACAAACTTA+TGG - chr1_4:66284218-66284237 Msa0178840:CDS 20.0%
! TGTTTGATAAAATACGCTTT+AGG + chr1_4:66280356-66280375 None:intergenic 25.0%
!!! TTATTATTTGGTGATGAGTT+TGG + chr1_4:66280410-66280429 None:intergenic 25.0%
!! ATCAACACCAAATCAAATTT+TGG + chr1_4:66281051-66281070 None:intergenic 25.0%
! TTGTTATGATCTAGTAAAGT+AGG - chr1_4:66281251-66281270 Msa0178840:intron 25.0%
! TGTTGCAGATATTAAGATTA+TGG - chr1_4:66281338-66281357 Msa0178840:intron 25.0%
! ACTAAGAAGCTATTAACAAT+TGG - chr1_4:66281448-66281467 Msa0178840:intron 25.0%
! GGAAAATGATGATCAATAAT+GGG + chr1_4:66281759-66281778 None:intergenic 25.0%
! AGGAAAATGATGATCAATAA+TGG + chr1_4:66281760-66281779 None:intergenic 25.0%
!! ATTCTTTGTTCCTTTTTCTA+AGG - chr1_4:66282149-66282168 Msa0178840:intron 25.0%
! AAACGATGAATTCAAAGAAA+AGG + chr1_4:66282190-66282209 None:intergenic 25.0%
! AATGTGAAAAACACTTTGAA+TGG - chr1_4:66282273-66282292 Msa0178840:intron 25.0%
! AGAGAGTAAAGAGAAAATAT+TGG + chr1_4:66282382-66282401 None:intergenic 25.0%
! TCTTTACTCTCTTTGATATT+GGG - chr1_4:66282390-66282409 Msa0178840:intron 25.0%
! AGTACAGAGTTATTGTAAAA+AGG + chr1_4:66282565-66282584 None:intergenic 25.0%
! GAAAGATGATAGCAATAATA+AGG + chr1_4:66282891-66282910 None:intergenic 25.0%
!!! ATTTTAGCCATTTCCTAATT+AGG - chr1_4:66283060-66283079 Msa0178840:intron 25.0%
!! TATTTGAAGTCTACCTAATT+AGG + chr1_4:66283076-66283095 None:intergenic 25.0%
! ATAATGTCTTGGATTTGTAA+AGG + chr1_4:66283382-66283401 None:intergenic 25.0%
! AGAATATCATGACAAATATC+AGG - chr1_4:66283624-66283643 Msa0178840:intron 25.0%
!!! TTTTGAAGAAAACAAAAGCT+TGG + chr1_4:66284259-66284278 None:intergenic 25.0%
!!! AAGCTTTTGTTTTCTTCAAA+AGG - chr1_4:66284258-66284277 Msa0178840:CDS 25.0%
TGTATAATTGAGGGTTATCA+CGG + chr1_4:66280326-66280345 None:intergenic 30.0%
AAGAACAGTTCCAAATTTCT+CGG + chr1_4:66280946-66280965 None:intergenic 30.0%
! AACATTTTCAACCCAAATTG+AGG + chr1_4:66281006-66281025 None:intergenic 30.0%
!! CAATTTGGGTTGAAAATGTT+AGG - chr1_4:66281006-66281025 Msa0178840:intron 30.0%
! AGGACACAAAATTTCTAAAG+GGG + chr1_4:66281277-66281296 None:intergenic 30.0%
CAGGACACAAAATTTCTAAA+GGG + chr1_4:66281278-66281297 None:intergenic 30.0%
ACAGGACACAAAATTTCTAA+AGG + chr1_4:66281279-66281298 None:intergenic 30.0%
GTTTGATCCTTAGAATGATA+TGG - chr1_4:66281577-66281596 Msa0178840:intron 30.0%
GTACAATCCATATCATTCTA+AGG + chr1_4:66281587-66281606 None:intergenic 30.0%
GCTTGGATTTGTACATAAAT+AGG + chr1_4:66281780-66281799 None:intergenic 30.0%
GTAATGAAGTAATGCTACAT+TGG + chr1_4:66281956-66281975 None:intergenic 30.0%
TGTAGCATTACTTCATTACT+CGG - chr1_4:66281957-66281976 Msa0178840:intron 30.0%
ACACTTTATAGCACTTACAT+TGG + chr1_4:66282053-66282072 None:intergenic 30.0%
GTTCGACACATAAATTGTTT+CGG - chr1_4:66282232-66282251 Msa0178840:CDS 30.0%
CACATTCAAAATCATACTCA+AGG + chr1_4:66282259-66282278 None:intergenic 30.0%
CTCTTTACTCTCTTTGATAT+TGG - chr1_4:66282389-66282408 Msa0178840:intron 30.0%
! TCTGATGTGAGACTATTTTA+TGG - chr1_4:66282487-66282506 Msa0178840:intron 30.0%
! CTGATGTGAGACTATTTTAT+GGG - chr1_4:66282488-66282507 Msa0178840:intron 30.0%
! TGATGTGAGACTATTTTATG+GGG - chr1_4:66282489-66282508 Msa0178840:intron 30.0%
TATAGGAGAGATTTAAAGAC+TGG - chr1_4:66282620-66282639 Msa0178840:intron 30.0%
ATAGGAGAGATTTAAAGACT+GGG - chr1_4:66282621-66282640 Msa0178840:intron 30.0%
AAACAATCTTTACCACTTGA+AGG + chr1_4:66282762-66282781 None:intergenic 30.0%
TCTTTCTTTCACTCTATGAT+AGG + chr1_4:66282964-66282983 None:intergenic 30.0%
!! CGACAGTAATGATTGTTTTT+AGG - chr1_4:66282984-66283003 Msa0178840:intron 30.0%
AAGTCTACCTAATTAGGAAA+TGG + chr1_4:66283070-66283089 None:intergenic 30.0%
!! CTTTGCAATTTTAATCATCG+CGG + chr1_4:66283102-66283121 None:intergenic 30.0%
! AAAATGCATGTCTCTTTTCT+TGG - chr1_4:66283204-66283223 Msa0178840:intron 30.0%
TTGGAAGAAGAAAGAAAAAG+AGG + chr1_4:66283265-66283284 None:intergenic 30.0%
AATAATGTAGTTGCAGTTGT+TGG + chr1_4:66283284-66283303 None:intergenic 30.0%
ATTATTCAAAAATAGGGTCC+TGG - chr1_4:66283298-66283317 Msa0178840:intron 30.0%
AAGAATCACCAAAACTAACA+AGG - chr1_4:66283350-66283369 Msa0178840:intron 30.0%
!! GGATAAAACCTTGTTAGTTT+TGG + chr1_4:66283361-66283380 None:intergenic 30.0%
!! ATGATGGATCAATAATGTCT+TGG + chr1_4:66283393-66283412 None:intergenic 30.0%
! TGACAACAATGTCATCATTT+TGG + chr1_4:66283421-66283440 None:intergenic 30.0%
TATCATGACAAATATCAGGA+AGG - chr1_4:66283628-66283647 Msa0178840:intron 30.0%
TAAAGAACTTCTGACCAAAA+TGG - chr1_4:66283954-66283973 Msa0178840:CDS 30.0%
! TTCTGACCAAAATGGAATTT+TGG - chr1_4:66283962-66283981 Msa0178840:CDS 30.0%
! ACAATGCCAAAATTCCATTT+TGG + chr1_4:66283971-66283990 None:intergenic 30.0%
CTAATACAACGTGTTTAAAC+AGG + chr1_4:66284305-66284324 None:intergenic 30.0%
TTACAGATGCCAATTTATCA+GGG + chr1_4:66284401-66284420 None:intergenic 30.0%
ATTACAGATGCCAATTTATC+AGG + chr1_4:66284402-66284421 None:intergenic 30.0%
AGATGTCTTAGAAAAGTGAG+TGG + chr1_4:66280249-66280268 None:intergenic 35.0%
ATCTTCCACTCCAATTCTAT+CGG - chr1_4:66280272-66280291 Msa0178840:three_prime_UTR 35.0%
GGTGCGTATTGTATAATTGA+GGG + chr1_4:66280335-66280354 None:intergenic 35.0%
AGGTGCGTATTGTATAATTG+AGG + chr1_4:66280336-66280355 None:intergenic 35.0%
TTTAAGCTGAAGATACTGAC+CGG + chr1_4:66280724-66280743 None:intergenic 35.0%
CAGTATCTTCAGCTTAAAGT+CGG - chr1_4:66280726-66280745 Msa0178840:three_prime_UTR 35.0%
!!! TTTTTGGTGAAGAGTGTTGT+TGG - chr1_4:66280822-66280841 Msa0178840:intron 35.0%
!!! TTTTGGTGAAGAGTGTTGTT+GGG - chr1_4:66280823-66280842 Msa0178840:intron 35.0%
! GGAATGGGTTTGATATTAGT+CGG - chr1_4:66280910-66280929 Msa0178840:intron 35.0%
AGAACAGTTCCAAATTTCTC+GGG + chr1_4:66280945-66280964 None:intergenic 35.0%
TTAGTGATTCATTGGCACTA+TGG - chr1_4:66281298-66281317 Msa0178840:intron 35.0%
! ATTATTAGTGCCACTCTGTT+CGG - chr1_4:66281398-66281417 Msa0178840:intron 35.0%
!! TAACAATTGGTGTTGCCTTT+AGG - chr1_4:66281461-66281480 Msa0178840:intron 35.0%
ATGACACATTCACAACCTAA+AGG + chr1_4:66281479-66281498 None:intergenic 35.0%
! TTAGGTTGTGAATGTGTCAT+TGG - chr1_4:66281479-66281498 Msa0178840:intron 35.0%
ACTCTTGCACTTACTTTCTT+TGG + chr1_4:66281559-66281578 None:intergenic 35.0%
TGGATTGTACTGAATGTACT+CGG - chr1_4:66281597-66281616 Msa0178840:intron 35.0%
ATCGTAAAATCAAGGAAGCT+TGG + chr1_4:66281797-66281816 None:intergenic 35.0%
GGCTATTCATCGTAAAATCA+AGG + chr1_4:66281805-66281824 None:intergenic 35.0%
TTACGATTCAAAATCGCTTG+TGG + chr1_4:66281861-66281880 None:intergenic 35.0%
TGTGTACTTAATAGGGAACT+TGG + chr1_4:66281888-66281907 None:intergenic 35.0%
GAATTCATCGTTTCTACTGA+TGG - chr1_4:66282197-66282216 Msa0178840:CDS 35.0%
AAGTAGTGATTTACATGCAG+AGG + chr1_4:66282326-66282345 None:intergenic 35.0%
TTATTGTGTGCAGTCCAATT+CGG - chr1_4:66282428-66282447 Msa0178840:intron 35.0%
TTTAAAGACTGGGAATCTTC+CGG - chr1_4:66282631-66282650 Msa0178840:intron 35.0%
! AGGTAAAGTGTGTGGAATTT+TGG - chr1_4:66282719-66282738 Msa0178840:intron 35.0%
TTTGCTTAACTACCTTCAAG+TGG - chr1_4:66282747-66282766 Msa0178840:intron 35.0%
ATAGACATGATTACCTTTGC+AGG - chr1_4:66282782-66282801 Msa0178840:intron 35.0%
!! AGTTTTGGTGATTCTTCTAC+CGG + chr1_4:66283346-66283365 None:intergenic 35.0%
! CATCATTTTGGACAGTATGA+TGG + chr1_4:66283409-66283428 None:intergenic 35.0%
ATGATGACATTGTTGTCACT+CGG - chr1_4:66283423-66283442 Msa0178840:intron 35.0%
ATGGAACATCCTTTCCAAAA+CGG + chr1_4:66283474-66283493 None:intergenic 35.0%
TGTCATGATATTCTCCCAAT+TGG + chr1_4:66283618-66283637 None:intergenic 35.0%
AGCGTCAATAAGTTTCAACT+AGG - chr1_4:66283816-66283835 Msa0178840:CDS 35.0%
ACATCTATTCTTGTTGCTGA+TGG - chr1_4:66283911-66283930 Msa0178840:CDS 35.0%
TTTGAATTATGCCTTTGCTG+AGG - chr1_4:66284001-66284020 Msa0178840:CDS 35.0%
! CACTTTTGCAGCTCAAATAT+AGG - chr1_4:66284082-66284101 Msa0178840:CDS 35.0%
GAAACTATGCATTATCAGAG+AGG - chr1_4:66284187-66284206 Msa0178840:CDS 35.0%
ATCAGGGATCTACAGTTTAA+GGG + chr1_4:66284385-66284404 None:intergenic 35.0%
TATCAGGGATCTACAGTTTA+AGG + chr1_4:66284386-66284405 None:intergenic 35.0%
ACTGTAGATCCCTGATAAAT+TGG - chr1_4:66284389-66284408 Msa0178840:five_prime_UTR 35.0%
! TCTTGATGGTCCGATAGAAT+TGG + chr1_4:66280285-66280304 None:intergenic 40.0%
TTCTATCGGACCATCAAGAA+AGG - chr1_4:66280286-66280305 Msa0178840:three_prime_UTR 40.0%
ACGTGTCAAACCTTTCTTGA+TGG + chr1_4:66280299-66280318 None:intergenic 40.0%
ATCAAGAAAGGTTTGACACG+TGG - chr1_4:66280298-66280317 Msa0178840:three_prime_UTR 40.0%
ATAGCAAGAAACGACGGTTT+CGG + chr1_4:66280759-66280778 None:intergenic 40.0%
!! GAGTGGTGTGTTTGAGTTTT+TGG - chr1_4:66280806-66280825 Msa0178840:intron 40.0%
GTCAGTTTCTGCCTCAATTT+GGG - chr1_4:66280992-66281011 Msa0178840:intron 40.0%
GTGTCCTGTTAGTGATTCAT+TGG - chr1_4:66281290-66281309 Msa0178840:intron 40.0%
AGTGCCAATGAATCACTAAC+AGG + chr1_4:66281297-66281316 None:intergenic 40.0%
ACAAAAAACTCCGAACAGAG+TGG + chr1_4:66281411-66281430 None:intergenic 40.0%
ATTGTACTGAATGTACTCGG+AGG - chr1_4:66281600-66281619 Msa0178840:intron 40.0%
AAGCTAAGCACAAGTCCATA+GGG - chr1_4:66281702-66281721 Msa0178840:intron 40.0%
TGGCATAACATAATTGGTCG+AGG + chr1_4:66281841-66281860 None:intergenic 40.0%
CGCTTGTGGCATAACATAAT+TGG + chr1_4:66281847-66281866 None:intergenic 40.0%
! GCTATAAAGTGTTTCAGCCA+TGG - chr1_4:66282061-66282080 Msa0178840:CDS 40.0%
ATCACTCTACAAGTCTACCA+AGG + chr1_4:66282109-66282128 None:intergenic 40.0%
TGGTAGACTTGTAGAGTGAT+TGG - chr1_4:66282109-66282128 Msa0178840:intron 40.0%
GTTTCTGTTGCAACTCTATC+TGG - chr1_4:66282300-66282319 Msa0178840:intron 40.0%
GACTCAATAAGTGACCGAAT+TGG + chr1_4:66282445-66282464 None:intergenic 40.0%
ATTCGGTCACTTATTGAGTC+AGG - chr1_4:66282445-66282464 Msa0178840:intron 40.0%
ATTGAGTCAGGATTTGATGC+TGG - chr1_4:66282457-66282476 Msa0178840:intron 40.0%
TACAGGTACAATCTTGACAC+CGG + chr1_4:66282653-66282672 None:intergenic 40.0%
TCATCTGGTTGAGACAATAC+AGG + chr1_4:66282670-66282689 None:intergenic 40.0%
TGTCTCAACCAGATGATAGT+TGG - chr1_4:66282674-66282693 Msa0178840:intron 40.0%
CTTTGTACAGGTAAAGTGTG+TGG - chr1_4:66282711-66282730 Msa0178840:intron 40.0%
TTATCCAACCCTTTGTCAAC+TGG - chr1_4:66282828-66282847 Msa0178840:intron 40.0%
TCACTAAACAAGAACGACAG+TGG + chr1_4:66282931-66282950 None:intergenic 40.0%
TTTAGGAAACCGAACCTACT+AGG - chr1_4:66283001-66283020 Msa0178840:intron 40.0%
CTCACTTACTACTTGTACAC+CGG - chr1_4:66283324-66283343 Msa0178840:intron 40.0%
TGATGACATTGTTGTCACTC+GGG - chr1_4:66283424-66283443 Msa0178840:intron 40.0%
!!! GTTTTGGAAAGGATGTTCCA+TGG - chr1_4:66283473-66283492 Msa0178840:intron 40.0%
!! TATGAGGGCATCATCATTGA+AGG - chr1_4:66283501-66283520 Msa0178840:intron 40.0%
ATCATCATTGAAGGAGCTAG+AGG - chr1_4:66283510-66283529 Msa0178840:intron 40.0%
GAACCCTCTCATACTTTATG+CGG + chr1_4:66283596-66283615 None:intergenic 40.0%
AAGTATGAGAGGGTTCCAAT+TGG - chr1_4:66283600-66283619 Msa0178840:intron 40.0%
AGTATGAGAGGGTTCCAATT+GGG - chr1_4:66283601-66283620 Msa0178840:intron 40.0%
AGATGTTTGATCCTCAGCAA+AGG + chr1_4:66284015-66284034 None:intergenic 40.0%
ATGGTCCGATAGAATTGGAG+TGG + chr1_4:66280280-66280299 None:intergenic 45.0%
GTGATGAGTTTGGTCAGAGT+CGG + chr1_4:66280400-66280419 None:intergenic 45.0%
! GATGAGGCGGTGTTAATGAA+AGG + chr1_4:66280449-66280468 None:intergenic 45.0%
TGGTGGGGTTTAGATTGAAG+CGG + chr1_4:66280533-66280552 None:intergenic 45.0%
GAAGCGATAGCAAGAAACGA+CGG + chr1_4:66280765-66280784 None:intergenic 45.0%
CCACTCTTAATCGCAAGCTT+CGG + chr1_4:66280792-66280811 None:intergenic 45.0%
! CGTTGTGTGGGTTGAAGAAA+GGG - chr1_4:66280859-66280878 Msa0178840:intron 45.0%
! GTTGTGTGGGTTGAAGAAAG+GGG - chr1_4:66280860-66280879 Msa0178840:intron 45.0%
GGATGTTGTTGAGCTTAGTC+CGG - chr1_4:66280881-66280900 Msa0178840:intron 45.0%
TGTTGAGCTTAGTCCGGTTA+TGG - chr1_4:66280887-66280906 Msa0178840:intron 45.0%
GTTGAGCTTAGTCCGGTTAT+GGG - chr1_4:66280888-66280907 Msa0178840:intron 45.0%
TTGAGCTTAGTCCGGTTATG+GGG - chr1_4:66280889-66280908 Msa0178840:intron 45.0%
TTAGTCCGGTTATGGGGAAT+GGG - chr1_4:66280895-66280914 Msa0178840:intron 45.0%
TCAAACCCATTCCCCATAAC+CGG + chr1_4:66280903-66280922 None:intergenic 45.0%
CAGTTCCAAATTTCTCGGGT+GGG + chr1_4:66280941-66280960 None:intergenic 45.0%
ACAGTTCCAAATTTCTCGGG+TGG + chr1_4:66280942-66280961 None:intergenic 45.0%
ACTGTTCTTGTCTTTGCCAC+TGG - chr1_4:66280957-66280976 Msa0178840:intron 45.0%
GGCAGAAACTGACCTAATTC+CGG + chr1_4:66280985-66281004 None:intergenic 45.0%
GGTCAGTTTCTGCCTCAATT+TGG - chr1_4:66280991-66281010 Msa0178840:intron 45.0%
! GGTTGTGAATGTGTCATTGG+TGG - chr1_4:66281482-66281501 Msa0178840:intron 45.0%
ACCTAACTGATAGACAGTCG+AGG - chr1_4:66281508-66281527 Msa0178840:intron 45.0%
CCTAACTGATAGACAGTCGA+GGG - chr1_4:66281509-66281528 Msa0178840:intron 45.0%
CTAACTGATAGACAGTCGAG+GGG - chr1_4:66281510-66281529 Msa0178840:intron 45.0%
GAAGCTAAGCACAAGTCCAT+AGG - chr1_4:66281701-66281720 Msa0178840:intron 45.0%
GAAAAGTCTCCTTCTCCCTA+TGG + chr1_4:66281720-66281739 None:intergenic 45.0%
TTTCAGCCATGGCTGTAAGA+GGG - chr1_4:66282072-66282091 Msa0178840:CDS 45.0%
CTCTACAAGTCTACCAAGGA+AGG + chr1_4:66282105-66282124 None:intergenic 45.0%
! AGCCATTCTCTTCAGGTTTC+TGG + chr1_4:66282515-66282534 None:intergenic 45.0%
CCTGATAAGCCATTCTCTTC+AGG + chr1_4:66282522-66282541 None:intergenic 45.0%
CCTGAAGAGAATGGCTTATC+AGG - chr1_4:66282519-66282538 Msa0178840:intron 45.0%
CAACCAGATGATAGTTGGAC+TGG - chr1_4:66282679-66282698 Msa0178840:intron 45.0%
TCTCCAGTCCAACTATCATC+TGG + chr1_4:66282685-66282704 None:intergenic 45.0%
! GATAGTTGGACTGGAGAAAG+TGG - chr1_4:66282688-66282707 Msa0178840:intron 45.0%
!! TGGAGAAAGTGGCTTTGTAC+AGG - chr1_4:66282699-66282718 Msa0178840:intron 45.0%
GTACAGCACCAGTTGACAAA+GGG + chr1_4:66282839-66282858 None:intergenic 45.0%
AGTACAGCACCAGTTGACAA+AGG + chr1_4:66282840-66282859 None:intergenic 45.0%
!! TCAACTGGTGCTGTACTTTG+TGG - chr1_4:66282843-66282862 Msa0178840:intron 45.0%
!! CAACTGGTGCTGTACTTTGT+GGG - chr1_4:66282844-66282863 Msa0178840:intron 45.0%
AGAGCTAGTCCTAGTAGGTT+CGG + chr1_4:66283013-66283032 None:intergenic 45.0%
ATTCCAGAGCTAGTCCTAGT+AGG + chr1_4:66283018-66283037 None:intergenic 45.0%
TTGGAAAGGATGTTCCATGG+AGG - chr1_4:66283476-66283495 Msa0178840:intron 45.0%
! ATGTTCCATGGAGGAGTATG+AGG - chr1_4:66283485-66283504 Msa0178840:intron 45.0%
! TGTTCCATGGAGGAGTATGA+GGG - chr1_4:66283486-66283505 Msa0178840:intron 45.0%
TCATTGAAGGAGCTAGAGGA+TGG - chr1_4:66283514-66283533 Msa0178840:intron 45.0%
ACCACCGCATAAAGTATGAG+AGG - chr1_4:66283589-66283608 Msa0178840:intron 45.0%
CCACCGCATAAAGTATGAGA+GGG - chr1_4:66283590-66283609 Msa0178840:intron 45.0%
! GAAGCAGCTAACTGGTTCAT+GGG + chr1_4:66283746-66283765 None:intergenic 45.0%
! TGAAGCAGCTAACTGGTTCA+TGG + chr1_4:66283747-66283766 None:intergenic 45.0%
TGAGAGATGAAGCAGCTAAC+TGG + chr1_4:66283754-66283773 None:intergenic 45.0%
CATCTCTCAATACAGTGTCC+TGG - chr1_4:66283765-66283784 Msa0178840:CDS 45.0%
AACACCAGTTGACACAAACC+AGG + chr1_4:66283786-66283805 None:intergenic 45.0%
GAGGATCAAACATCTCAGCA+TGG - chr1_4:66284020-66284039 Msa0178840:CDS 45.0%
AGGGATCTACAGTTTAAGGG+AGG + chr1_4:66284382-66284401 None:intergenic 45.0%
AGTTTGGTCAGAGTCGGAAG+TGG + chr1_4:66280394-66280413 None:intergenic 50.0%
TAGGATGGACATGGGAAAGG+GGG + chr1_4:66280508-66280527 None:intergenic 50.0%
GTAGGATGGACATGGGAAAG+GGG + chr1_4:66280509-66280528 None:intergenic 50.0%
CGTAGGATGGACATGGGAAA+GGG + chr1_4:66280510-66280529 None:intergenic 50.0%
TAGATTGAAGCGGCGTAGGA+TGG + chr1_4:66280523-66280542 None:intergenic 50.0%
GGTTTAGATTGAAGCGGCGT+AGG + chr1_4:66280527-66280546 None:intergenic 50.0%
AACGTGGAAGAGTGACTCAG+CGG + chr1_4:66280652-66280671 None:intergenic 50.0%
CTCTTAATCGCAAGCTTCGG+CGG + chr1_4:66280789-66280808 None:intergenic 50.0%
CCGAAGCTTGCGATTAAGAG+TGG - chr1_4:66280789-66280808 Msa0178840:CDS 50.0%
! GCGTTGTGTGGGTTGAAGAA+AGG - chr1_4:66280858-66280877 Msa0178840:intron 50.0%
CTTAGTCCGGTTATGGGGAA+TGG - chr1_4:66280894-66280913 Msa0178840:intron 50.0%
ATCGACCCACCCGAGAAATT+TGG - chr1_4:66280933-66280952 Msa0178840:intron 50.0%
CTTGTCTTTGCCACTGGATC+CGG - chr1_4:66280963-66280982 Msa0178840:intron 50.0%
TTGCCACTGGATCCGGAATT+AGG - chr1_4:66280970-66280989 Msa0178840:intron 50.0%
TGACCTAATTCCGGATCCAG+TGG + chr1_4:66280976-66280995 None:intergenic 50.0%
CCCTCGACTGTCTATCAGTT+AGG + chr1_4:66281512-66281531 None:intergenic 50.0%
ATAGACAGTCGAGGGGAACT+AGG - chr1_4:66281517-66281536 Msa0178840:intron 50.0%
AGCACAAGTCCATAGGGAGA+AGG - chr1_4:66281708-66281727 Msa0178840:intron 50.0%
GGTCGAGGCAAATTGACATG+TGG + chr1_4:66281826-66281845 None:intergenic 50.0%
GTTTCAGCCATGGCTGTAAG+AGG - chr1_4:66282071-66282090 Msa0178840:CDS 50.0%
AACTTGCCCTCTTACAGCCA+TGG + chr1_4:66282081-66282100 None:intergenic 50.0%
AGAGGGCAAGTTACCTTCCT+TGG - chr1_4:66282089-66282108 Msa0178840:intron 50.0%
CAGGATTTGATGCTGGCAAG+AGG - chr1_4:66282464-66282483 Msa0178840:intron 50.0%
GGCCAGAAACCTGAAGAGAA+TGG - chr1_4:66282510-66282529 Msa0178840:intron 50.0%
CTCGTATATGCAGCCTGCAA+AGG + chr1_4:66282798-66282817 None:intergenic 50.0%
GGCTGCATATACGAGAGCAA+AGG - chr1_4:66282803-66282822 Msa0178840:intron 50.0%
AGCACCAGTTGACAAAGGGT+TGG + chr1_4:66282835-66282854 None:intergenic 50.0%
TGGGCAGAAACAGATGACTG+AGG - chr1_4:66282863-66282882 Msa0178840:intron 50.0%
!! GAACCTACTAGGACTAGCTC+TGG - chr1_4:66283012-66283031 Msa0178840:intron 50.0%
CAAGTAGTAAGTGAGCGACC+AGG + chr1_4:66283319-66283338 None:intergenic 50.0%
!! GGATGGATTGCCAGTTAAGC+TGG - chr1_4:66283531-66283550 Msa0178840:intron 50.0%
! TTGCCAGTTAAGCTGGCTCT+TGG - chr1_4:66283538-66283557 Msa0178840:intron 50.0%
! TGCCAGTTAAGCTGGCTCTT+GGG - chr1_4:66283539-66283558 Msa0178840:intron 50.0%
CCCTCTCATACTTTATGCGG+TGG + chr1_4:66283593-66283612 None:intergenic 50.0%
! GTGTCCTGGTTTGTGTCAAC+TGG - chr1_4:66283779-66283798 Msa0178840:CDS 50.0%
GTGTCTATGACTGCACACTC+TGG - chr1_4:66284143-66284162 Msa0178840:CDS 50.0%
TTGGTCAGAGTCGGAAGTGG+CGG + chr1_4:66280391-66280410 None:intergenic 55.0%
TGGAGGGTAAGAGGATGAGG+CGG + chr1_4:66280462-66280481 None:intergenic 55.0%
GAGTGGAGGGTAAGAGGATG+AGG + chr1_4:66280465-66280484 None:intergenic 55.0%
AAAGTGCGCATGGGAGTGGA+GGG + chr1_4:66280478-66280497 None:intergenic 55.0%
TAAAGTGCGCATGGGAGTGG+AGG + chr1_4:66280479-66280498 None:intergenic 55.0%
ATGGACATGGGAAAGGGGGT+GGG + chr1_4:66280504-66280523 None:intergenic 55.0%
GCGTAGGATGGACATGGGAA+AGG + chr1_4:66280511-66280530 None:intergenic 55.0%
AAGCGGCGTAGGATGGACAT+GGG + chr1_4:66280516-66280535 None:intergenic 55.0%
AAAGGGTTGCGAGTCGGTGA+CGG + chr1_4:66280566-66280585 None:intergenic 55.0%
GACGGTGGTGTCTTGACGTA+CGG + chr1_4:66280595-66280614 None:intergenic 55.0%
TACGTCAAGACACCACCGTC+TGG - chr1_4:66280595-66280614 Msa0178840:three_prime_UTR 55.0%
CGGAAACGTCGATGGAAACG+TGG + chr1_4:66280668-66280687 None:intergenic 55.0%
TGTGAGACGTGGCAAGGTCA+GGG + chr1_4:66280695-66280714 None:intergenic 55.0%
!! TCCACTGCAGAAGCGTTGTG+TGG - chr1_4:66280846-66280865 Msa0178840:intron 55.0%
!! CCACTGCAGAAGCGTTGTGT+GGG - chr1_4:66280847-66280866 Msa0178840:intron 55.0%
ACATTGTTGTCACTCGGGCC+TGG - chr1_4:66283429-66283448 Msa0178840:intron 55.0%
CTCGCTAGTCCAACTAGACC+AGG + chr1_4:66283450-66283469 None:intergenic 55.0%
!! CTGGTCTAGTTGGACTAGCG+AGG - chr1_4:66283448-66283467 Msa0178840:intron 55.0%
!!! TTGGACTAGCGAGGCCGTTT+TGG - chr1_4:66283457-66283476 Msa0178840:intron 55.0%
!!! CTAGCGAGGCCGTTTTGGAA+AGG - chr1_4:66283462-66283481 Msa0178840:intron 55.0%
GATGCCCTCATACTCCTCCA+TGG + chr1_4:66283493-66283512 None:intergenic 55.0%
! GCCAGTTAAGCTGGCTCTTG+GGG - chr1_4:66283540-66283559 Msa0178840:intron 55.0%
! CCAGTTAAGCTGGCTCTTGG+GGG - chr1_4:66283541-66283560 Msa0178840:intron 55.0%
GCATGGGAGTGGAGGGTAAG+AGG + chr1_4:66280471-66280490 None:intergenic 60.0%
GGCTAAAGTGCGCATGGGAG+TGG + chr1_4:66280482-66280501 None:intergenic 60.0%
GGTGGGGCTAAAGTGCGCAT+GGG + chr1_4:66280487-66280506 None:intergenic 60.0%
TGGACATGGGAAAGGGGGTG+GGG + chr1_4:66280503-66280522 None:intergenic 60.0%
GATGGACATGGGAAAGGGGG+TGG + chr1_4:66280505-66280524 None:intergenic 60.0%
GAAGCGGCGTAGGATGGACA+TGG + chr1_4:66280517-66280536 None:intergenic 60.0%
TGACGGAGACGGTGGTTGGT+GGG + chr1_4:66280549-66280568 None:intergenic 60.0%
!! TTGCGAGTCGGTGACGGAGA+CGG + chr1_4:66280560-66280579 None:intergenic 60.0%
TTGACGTACGGCGGCGGAAA+GGG + chr1_4:66280583-66280602 None:intergenic 60.0%
GGTGGTGTCTTGACGTACGG+CGG + chr1_4:66280592-66280611 None:intergenic 60.0%
GAGAGGAGCTGGAGTCCAGA+CGG + chr1_4:66280613-66280632 None:intergenic 60.0%
TCGATCTCGGAGAGAGGAGC+TGG + chr1_4:66280624-66280643 None:intergenic 60.0%
GCAGGTTCGATCTCGGAGAG+AGG + chr1_4:66280630-66280649 None:intergenic 60.0%
CTCAGCGGCAGGTTCGATCT+CGG + chr1_4:66280637-66280656 None:intergenic 60.0%
TGGAAGAGTGACTCAGCGGC+AGG + chr1_4:66280648-66280667 None:intergenic 60.0%
GTGAGACGTGGCAAGGTCAG+GGG + chr1_4:66280694-66280713 None:intergenic 60.0%
GTGTGAGACGTGGCAAGGTC+AGG + chr1_4:66280696-66280715 None:intergenic 60.0%
CCCACACAACGCTTCTGCAG+TGG + chr1_4:66280850-66280869 None:intergenic 60.0%
TCACTCGGGCCTGGTCTAGT+TGG - chr1_4:66283438-66283457 Msa0178840:intron 60.0%
CCCCCAAGAGCCAGCTTAAC+TGG + chr1_4:66283544-66283563 None:intergenic 60.0%
GGGGGCAGTGGGACAGAAAA+CGG - chr1_4:66283559-66283578 Msa0178840:intron 60.0%
AGTCGGAAGTGGCGGCAGGA+GGG + chr1_4:66280383-66280402 None:intergenic 65.0%
TCAGAGTCGGAAGTGGCGGC+AGG + chr1_4:66280387-66280406 None:intergenic 65.0%
GGGTGGGGCTAAAGTGCGCA+TGG + chr1_4:66280488-66280507 None:intergenic 65.0%
! GACGGAGACGGTGGTTGGTG+GGG + chr1_4:66280548-66280567 None:intergenic 65.0%
! GTGACGGAGACGGTGGTTGG+TGG + chr1_4:66280550-66280569 None:intergenic 65.0%
!! TCGGTGACGGAGACGGTGGT+TGG + chr1_4:66280553-66280572 None:intergenic 65.0%
CGGCGGAAAGGGTTGCGAGT+CGG + chr1_4:66280572-66280591 None:intergenic 65.0%
CTTGACGTACGGCGGCGGAA+AGG + chr1_4:66280584-66280603 None:intergenic 65.0%
GGTGTCTTGACGTACGGCGG+CGG + chr1_4:66280589-66280608 None:intergenic 65.0%
AGGAGCTGGAGTCCAGACGG+TGG + chr1_4:66280610-66280629 None:intergenic 65.0%
!! AGGGGCGTCGGAAACGTCGA+TGG + chr1_4:66280676-66280695 None:intergenic 65.0%
CGCGTGTGTGAGACGTGGCA+AGG + chr1_4:66280701-66280720 None:intergenic 65.0%
! AAGCTGGCTCTTGGGGGCAG+TGG - chr1_4:66283547-66283566 Msa0178840:intron 65.0%
! AGCTGGCTCTTGGGGGCAGT+GGG - chr1_4:66283548-66283567 Msa0178840:intron 65.0%
GTCGGAAGTGGCGGCAGGAG+GGG + chr1_4:66280382-66280401 None:intergenic 70.0%
GAGTCGGAAGTGGCGGCAGG+AGG + chr1_4:66280384-66280403 None:intergenic 70.0%
!! CGAGTCGGTGACGGAGACGG+TGG + chr1_4:66280557-66280576 None:intergenic 70.0%
! CGTGGCAAGGTCAGGGGCGT+CGG + chr1_4:66280688-66280707 None:intergenic 70.0%
GCCACGTCTCACACACGCGC+CGG - chr1_4:66280702-66280721 Msa0178840:three_prime_UTR 70.0%
ACCGGCGCGTGTGTGAGACG+TGG + chr1_4:66280706-66280725 None:intergenic 70.0%
GGAAGTGGCGGCAGGAGGGG+CGG + chr1_4:66280379-66280398 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_4 gene 66280243 66284479 66280243 ID=Msa0178840;Name=Msa0178840
chr1_4 mRNA 66280243 66284479 66280243 ID=Msa0178840-mRNA-1;Parent=Msa0178840;Name=Msa0178840-mRNA-1;_AED=0.06;_eAED=0.06;_QI=195|1|1|1|1|1|5|512|297
chr1_4 exon 66280243 66280817 66280243 ID=Msa0178840-mRNA-1:exon:21653;Parent=Msa0178840-mRNA-1
chr1_4 exon 66281838 66281918 66281838 ID=Msa0178840-mRNA-1:exon:21652;Parent=Msa0178840-mRNA-1
chr1_4 exon 66282002 66282097 66282002 ID=Msa0178840-mRNA-1:exon:21651;Parent=Msa0178840-mRNA-1
chr1_4 exon 66282182 66282281 66282182 ID=Msa0178840-mRNA-1:exon:21650;Parent=Msa0178840-mRNA-1
chr1_4 exon 66283731 66284479 66283731 ID=Msa0178840-mRNA-1:exon:21649;Parent=Msa0178840-mRNA-1
chr1_4 five_prime_UTR 66284285 66284479 66284285 ID=Msa0178840-mRNA-1:five_prime_utr;Parent=Msa0178840-mRNA-1
chr1_4 CDS 66283731 66284284 66283731 ID=Msa0178840-mRNA-1:cds;Parent=Msa0178840-mRNA-1
chr1_4 CDS 66282182 66282281 66282182 ID=Msa0178840-mRNA-1:cds;Parent=Msa0178840-mRNA-1
chr1_4 CDS 66282002 66282097 66282002 ID=Msa0178840-mRNA-1:cds;Parent=Msa0178840-mRNA-1
chr1_4 CDS 66281838 66281918 66281838 ID=Msa0178840-mRNA-1:cds;Parent=Msa0178840-mRNA-1
chr1_4 CDS 66280755 66280817 66280755 ID=Msa0178840-mRNA-1:cds;Parent=Msa0178840-mRNA-1
chr1_4 three_prime_UTR 66280243 66280754 66280243 ID=Msa0178840-mRNA-1:three_prime_utr;Parent=Msa0178840-mRNA-1
Gene Sequence

>Msa0178840

ATGTCACTCCTTTCATTAACACCGCCTCATCCTCTTACCCTCCACTCCCATGCGCACTTTAGCCCCACCCCCTTTCCCATGTCCATCCTACGCCGCTTCAATCTAAACCCCACCAACCACCGTCTCCGTCACCGACTCGCAACCCTTTCCGCCGCCGTACGTCAAGACACCACCGTCTGGACTCCAGCTCCTCTCTCCGAGATCGAACCTGCCGCTGAGTCACTCTTCCACGTTTCCATCGACGTTTCCGACGCCCCTGACCTTGCCACGTCTCACACACGCGCCGGTCAGTATCTTCAGCTTAAAGTCGGTGATTCGCCGAAACCGTCGTTTCTTGCTATCGCTTCGCCGCCGAAGCTTGCGATTAAGAGTGGTGTGTTTGAGTTTTTGGTGAAGAGTGTTGTTGGGTCCACTGCAGAAGCGTTGTGTGGGTTGAAGAAAGGGGATGTTGTTGAGCTTAGTCCGGTTATGGGGAATGGGTTTGATATTAGTCGGATCGACCCACCCGAGAAATTTGGAACTGTTCTTGTCTTTGCCACTGGATCCGGAATTAGTCCAATTCGGTCACTTATTGAGTCAGGATTTGATGCTGGCAAGAGGTCTGATGTGAGACTATTTTATGGGGCCAGAAACCTGAAGAGAATGGCTTATCAGGAGAGATTTAAAGACTGGGAATCTTCCGGTGTCAAGATTGTACCTGTATTGTCTCAACCAGATGATAGTTGGACTGGAGAAAGTGGCTTTGTACAGGCTGCATATACGAGAGCAAAGGAATTATCCAACCCTTTGTCAACTGGTGCTGTACTTTGTGGGCAGAAACAGATGACTGAGGAAATTACATCTATTCTTGTTGCTGATGGAGTATCAGCTGAGAAGATACTAAAGAACTTCTGA
Protein sequence

>Msa0178840

MSLLSLTPPHPLTLHSHAHFSPTPFPMSILRRFNLNPTNHRLRHRLATLSAAVRQDTTVWTPAPLSEIEPAAESLFHVSIDVSDAPDLATSHTRAGQYLQLKVGDSPKPSFLAIASPPKLAIKSGVFEFLVKSVVGSTAEALCGLKKGDVVELSPVMGNGFDISRIDPPEKFGTVLVFATGSGISPIRSLIESGFDAGKRSDVRLFYGARNLKRMAYQERFKDWESSGVKIVPVLSQPDDSWTGESGFVQAAYTRAKELSNPLSTGAVLCGQKQMTEEITSILVADGVSAEKILKNF*