AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0042950

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042950 MtrunA17_Chr1g0208721 96.296 297 8 1 1 297 1 294 0.0 578
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0042950 AT1G15140.1 70.732 287 77 3 16 297 11 295 1.28e-142 404
Msa0042950 AT1G15140.2 69.583 240 66 3 16 250 11 248 9.19e-114 329
Msa0042950 AT1G15140.3 69.583 240 66 3 16 250 11 248 9.19e-114 329

Find 145 sgRNAs with CRISPR-Local

Find 325 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AGCCATTCTCTTCAGGTTTC+TGG 0.108389 1_1:+73900456 None:intergenic
TTCTGACCAAAATGGAATTT+TGG 0.144657 1_1:-73898987 Msa0042950:exon
GAATGTAAAATAAACAATTT+TGG 0.174190 1_1:-73898907 Msa0042950:three_prime_UTR
TATCAGGGATCTACAGTTTA+AGG 0.189359 1_1:+73898566 None:intergenic
ATTACAGATGCCAATTTATC+AGG 0.202510 1_1:+73898550 None:intergenic
ATCGACCCACCCGAGAAATT+TGG 0.234673 1_1:-73902033 Msa0042950:CDS
CCTGAAGAGAATGGCTTATC+AGG 0.258718 1_1:-73900449 Msa0042950:intron
ACAATGCCAAAATTCCATTT+TGG 0.260562 1_1:+73898981 None:intergenic
TGTTGAGCTTAGTCCGGTTA+TGG 0.301742 1_1:-73902079 Msa0042950:CDS
CCTGATAAGCCATTCTCTTC+AGG 0.302056 1_1:+73900449 None:intergenic
TAAAGAACTTCTGACCAAAA+TGG 0.311227 1_1:-73898995 Msa0042950:exon
ACTGTAGATCCCTGATAAAT+TGG 0.328093 1_1:-73898560 Msa0042950:three_prime_UTR
TTGCCACTGGATCCGGAATT+AGG 0.330537 1_1:-73901996 Msa0042950:intron
GTGTGAGACGTGGCAAGGTC+AGG 0.331915 1_1:+73902273 None:intergenic
TTATTATTTGGTGATGAGTT+TGG 0.332009 1_1:+73902559 None:intergenic
CTTGTCTTTGCCACTGGATC+CGG 0.337767 1_1:-73902003 Msa0042950:CDS
AATATATTGACACAAACTTA+TGG 0.348143 1_1:-73898731 Msa0042950:three_prime_UTR
ACGTGTCAAACCTTTCTTGA+TGG 0.351331 1_1:+73902670 None:intergenic
GTTGAGCTTAGTCCGGTTAT+GGG 0.374160 1_1:-73902078 Msa0042950:CDS
CTTAGTCCGGTTATGGGGAA+TGG 0.384177 1_1:-73902072 Msa0042950:CDS
TTATCCAACCCTTTGTCAAC+TGG 0.387952 1_1:-73900121 Msa0042950:CDS
TCTTGATGGTCCGATAGAAT+TGG 0.389250 1_1:+73902684 None:intergenic
ACTGTTCTTGTCTTTGCCAC+TGG 0.391138 1_1:-73902009 Msa0042950:CDS
ATCAGGGATCTACAGTTTAA+GGG 0.392229 1_1:+73898567 None:intergenic
TATAGGAGAGATTTAAAGAC+TGG 0.394111 1_1:-73900329 Msa0042950:intron
CGCTAAAGTGCGCATGGGAG+TGG 0.398172 1_1:+73902487 None:intergenic
ATTCGGTCACTTATTGAGTC+AGG 0.405073 1_1:-73900523 Msa0042950:CDS
GTGTTTGATAAAATACGCTT+TGG 0.408656 1_1:+73902612 None:intergenic
CTAATACAATGTGTTTAAAC+AGG 0.410988 1_1:+73898647 None:intergenic
TCAACTGGTGCTGTACTTTG+TGG 0.414186 1_1:-73900106 Msa0042950:CDS
TTTAAAGACTGGGAATCTTC+CGG 0.416173 1_1:-73900318 Msa0042950:CDS
CGTTGTGTGGGTTGAAGAAA+GGG 0.418149 1_1:-73902107 Msa0042950:CDS
GCGTTGTGTGGGTTGAAGAA+AGG 0.428547 1_1:-73902108 Msa0042950:CDS
CGTAGGATGGACATGGGAAA+GGG 0.429123 1_1:+73902459 None:intergenic
GGCAGAAACTGACCTAATTC+CGG 0.434711 1_1:+73901984 None:intergenic
TCGATCTCGGAGAGAGGAGC+TGG 0.438598 1_1:+73902345 None:intergenic
ACATCTATTCTTGTTGCTGA+TGG 0.438700 1_1:-73899038 Msa0042950:CDS
TCAAACCCATTCCCCATAAC+CGG 0.441227 1_1:+73902066 None:intergenic
CAACTGGTGCTGTACTTTGT+GGG 0.442180 1_1:-73900105 Msa0042950:CDS
GGGTGCGTATTGTCTAATTG+AGG 0.443714 1_1:+73902633 None:intergenic
TTGACGTACGGCGGCGGAAA+GGG 0.449809 1_1:+73902386 None:intergenic
GACTCAATAAGTGACCGAAT+TGG 0.449902 1_1:+73900526 None:intergenic
TGTTTGATAAAATACGCTTT+GGG 0.450385 1_1:+73902613 None:intergenic
CTTGACGTACGGCGGCGGAA+AGG 0.459299 1_1:+73902385 None:intergenic
TGACGGAGACGGTGGTTGGT+GGG 0.462815 1_1:+73902420 None:intergenic
TCTCCAGTCCAACTATCATC+TGG 0.464149 1_1:+73900267 None:intergenic
GGTGCGTATTGTCTAATTGA+GGG 0.465429 1_1:+73902634 None:intergenic
GTCGGAAGTGGCGGCAGGAG+GGG 0.468552 1_1:+73902587 None:intergenic
GCGTAGGATGGACATGGGAA+AGG 0.470876 1_1:+73902458 None:intergenic
GTGACGGAGACGGTGGTTGG+TGG 0.471139 1_1:+73902419 None:intergenic
GAGTCGGAAGTGGCGGCAGG+AGG 0.474111 1_1:+73902585 None:intergenic
ATAGCAAGAAACGACGGTTT+CGG 0.475246 1_1:+73902210 None:intergenic
TACGTCAAGACACCACCGTC+TGG 0.479107 1_1:-73902371 Msa0042950:CDS
GTAGGATGGACATGGGAAAG+GGG 0.482435 1_1:+73902460 None:intergenic
TGTGAGACGTGGCAAGGTCA+GGG 0.483409 1_1:+73902274 None:intergenic
TTAGTCCGGTTATGGGGAAT+GGG 0.485622 1_1:-73902071 Msa0042950:CDS
GAGTGGAGGGTAAGAGGATG+AGG 0.493794 1_1:+73902504 None:intergenic
CGTGGCAAGGTCAGGGGCGT+CGG 0.495943 1_1:+73902281 None:intergenic
TTCTATCGGACCATCAAGAA+AGG 0.498583 1_1:-73902680 Msa0042950:five_prime_UTR
GGATGTTGTTGAGCTTAGTC+CGG 0.502498 1_1:-73902085 Msa0042950:CDS
TAGGATGGACATGGGAAAGG+GGG 0.503705 1_1:+73902461 None:intergenic
AAGAACAGTTCCAAATTTCT+CGG 0.503898 1_1:+73902023 None:intergenic
TGTCTCAACCAGATGATAGT+TGG 0.504609 1_1:-73900275 Msa0042950:CDS
GACGGAGACGGTGGTTGGTG+GGG 0.509831 1_1:+73902421 None:intergenic
TTATTGTGTGCAGTCCAATT+CGG 0.511671 1_1:-73900540 Msa0042950:intron
TGGAGAAAGTGGCTTTGTAC+AGG 0.512190 1_1:-73900250 Msa0042950:intron
TCAGAGTCGGAAGTGGCGGC+AGG 0.512965 1_1:+73902582 None:intergenic
CAACCAGATGATAGTTGGAC+TGG 0.517272 1_1:-73900270 Msa0042950:CDS
ATTGAGTCAGGATTTGATGC+TGG 0.518551 1_1:-73900511 Msa0042950:CDS
AGAACAGTTCCAAATTTCTC+GGG 0.523438 1_1:+73902024 None:intergenic
GGAAGTGGCGGCAGGAGGGG+CGG 0.523885 1_1:+73902590 None:intergenic
AGTCGGAAGTGGCGGCAGGA+GGG 0.524838 1_1:+73902586 None:intergenic
GGTTTAGATTGAAGCGGCGT+AGG 0.525093 1_1:+73902442 None:intergenic
GCATGGGAGTGGAGGGTAAG+AGG 0.525884 1_1:+73902498 None:intergenic
GGGTGGCGCTAAAGTGCGCA+TGG 0.529313 1_1:+73902481 None:intergenic
ATCTTCCACTCCAATTCTAT+CGG 0.539225 1_1:-73902694 Msa0042950:five_prime_UTR
GACGGTGGTGTCTTGACGTA+CGG 0.543425 1_1:+73902374 None:intergenic
GATAGTTGGACTGGAGAAAG+TGG 0.543932 1_1:-73900261 Msa0042950:CDS
GGTGTCTTGACGTACGGCGG+CGG 0.544339 1_1:+73902380 None:intergenic
TCCACTGCAGAAGCGTTGTG+TGG 0.545176 1_1:-73902120 Msa0042950:CDS
TAGATTGAAGCGGCGTAGGA+TGG 0.550133 1_1:+73902446 None:intergenic
TGTCTAATTGAGGGTTATCA+CGG 0.551013 1_1:+73902643 None:intergenic
GATGAGGCGGTGTTAATGAA+AGG 0.551705 1_1:+73902520 None:intergenic
AAAGGGTTGCGAGTCGGTGA+CGG 0.551990 1_1:+73902403 None:intergenic
GGCCAGAAACCTGAAGAGAA+TGG 0.557359 1_1:-73900458 Msa0042950:CDS
TTGCGAGTCGGTGACGGAGA+CGG 0.557465 1_1:+73902409 None:intergenic
AGGGGCGTCGGAAACGTCGA+TGG 0.558624 1_1:+73902293 None:intergenic
TAAAGTGCGCATGGGAGTGG+AGG 0.559176 1_1:+73902490 None:intergenic
ACAGTTCCAAATTTCTCGGG+TGG 0.560614 1_1:+73902027 None:intergenic
GGAATGGGTTTGATATTAGT+CGG 0.561988 1_1:-73902056 Msa0042950:CDS
CTCAGCGGCAGGTTCGATCT+CGG 0.562464 1_1:+73902332 None:intergenic
CGCGTGTGTGAGACGTGGCA+AGG 0.563503 1_1:+73902268 None:intergenic
TCGGTGACGGAGACGGTGGT+TGG 0.563811 1_1:+73902416 None:intergenic
CTCTTAATCGCAAGCTTCGG+CGG 0.564323 1_1:+73902180 None:intergenic
GTGATGAGTTTGGTCAGAGT+CGG 0.570585 1_1:+73902569 None:intergenic
TGGAAGAGTGACTCAGCGGC+AGG 0.570715 1_1:+73902321 None:intergenic
GTACAGCACCAGTTGACAAA+GGG 0.571677 1_1:+73900113 None:intergenic
GAGAGGAGCTGGAGTCCAGA+CGG 0.574346 1_1:+73902356 None:intergenic
TTACAGATGCCAATTTATCA+GGG 0.577062 1_1:+73898551 None:intergenic
TCATCTGGTTGAGACAATAC+AGG 0.579533 1_1:+73900282 None:intergenic
TTGAGCTTAGTCCGGTTATG+GGG 0.580245 1_1:-73902077 Msa0042950:CDS
GGGTCTATTACTGCACACTC+TGG 0.580642 1_1:-73898806 Msa0042950:three_prime_UTR
CAGTTCCAAATTTCTCGGGT+GGG 0.584521 1_1:+73902028 None:intergenic
CCACTCTTAATCGCAAGCTT+CGG 0.586640 1_1:+73902177 None:intergenic
GTGAGACGTGGCAAGGTCAG+GGG 0.594184 1_1:+73902275 None:intergenic
GGTGGCGCTAAAGTGCGCAT+GGG 0.595257 1_1:+73902482 None:intergenic
CCCACACAACGCTTCTGCAG+TGG 0.596333 1_1:+73902119 None:intergenic
AGTTTGGTCAGAGTCGGAAG+TGG 0.597586 1_1:+73902575 None:intergenic
TGGTGGGGTTTAGATTGAAG+CGG 0.600108 1_1:+73902436 None:intergenic
GAAGCGGCGTAGGATGGACA+TGG 0.600277 1_1:+73902452 None:intergenic
AGCACCAGTTGACAAAGGGT+TGG 0.602600 1_1:+73900117 None:intergenic
TTGGTCAGAGTCGGAAGTGG+CGG 0.603781 1_1:+73902578 None:intergenic
AGTACAGCACCAGTTGACAA+AGG 0.607829 1_1:+73900112 None:intergenic
TTTGAATTATGCCTTTGCTG+AGG 0.608362 1_1:-73898948 Msa0042950:three_prime_UTR
GCAGGTTCGATCTCGGAGAG+AGG 0.610044 1_1:+73902339 None:intergenic
CCGAAGCTTGCGATTAAGAG+TGG 0.610290 1_1:-73902177 Msa0042950:CDS
AAAGTGCGCATGGGAGTGGA+GGG 0.615711 1_1:+73902491 None:intergenic
CCACTGCAGAAGCGTTGTGT+GGG 0.619285 1_1:-73902119 Msa0042950:CDS
AGGAGCTGGAGTCCAGACGG+TGG 0.619490 1_1:+73902359 None:intergenic
CAGTATCTTCAGCTTAAAGT+CGG 0.619863 1_1:-73902240 Msa0042950:CDS
GCCACGTCTCACACACGCGC+CGG 0.620260 1_1:-73902264 Msa0042950:CDS
CGGCGGAAAGGGTTGCGAGT+CGG 0.621174 1_1:+73902397 None:intergenic
CAGGATTTGATGCTGGCAAG+AGG 0.625026 1_1:-73900504 Msa0042950:CDS
ATGGTCCGATAGAATTGGAG+TGG 0.627347 1_1:+73902689 None:intergenic
TGACCTAATTCCGGATCCAG+TGG 0.627958 1_1:+73901993 None:intergenic
TGGAGGGTAAGAGGATGAGG+CGG 0.630907 1_1:+73902507 None:intergenic
AGATGTTTGATCCTCAGCAA+AGG 0.639485 1_1:+73898937 None:intergenic
ATAGGAGAGATTTAAAGACT+GGG 0.643444 1_1:-73900328 Msa0042950:intron
TTTAAGCTGAAGATACTGAC+CGG 0.649623 1_1:+73902245 None:intergenic
CGGAAACGTCGATGGAAACG+TGG 0.650313 1_1:+73902301 None:intergenic
GGCTGCATATACGAGAGCAA+AGG 0.651480 1_1:-73900146 Msa0042950:CDS
TACAGGTACAATCTTGACAC+CGG 0.656089 1_1:+73900299 None:intergenic
GAGGATCAAACATCTCAGCA+TGG 0.667075 1_1:-73898929 Msa0042950:three_prime_UTR
ATCAAGAAAGGTTTGACACG+TGG 0.669419 1_1:-73902668 Msa0042950:five_prime_UTR
CGAGTCGGTGACGGAGACGG+TGG 0.672480 1_1:+73902412 None:intergenic
GTTGTGTGGGTTGAAGAAAG+GGG 0.680851 1_1:-73902106 Msa0042950:CDS
GAAACTATGCATTATCAGAG+AGG 0.691201 1_1:-73898762 Msa0042950:three_prime_UTR
AAGCGGCGTAGGATGGACAT+GGG 0.692247 1_1:+73902453 None:intergenic
AGATGTCTTAGAAAAGTGAG+TGG 0.694735 1_1:+73902720 None:intergenic
AGGGATCTACAGTTTAAGGG+AGG 0.698588 1_1:+73898570 None:intergenic
ACCGGCGCGTGTGTGAGACG+TGG 0.704486 1_1:+73902263 None:intergenic
GGTGGTGTCTTGACGTACGG+CGG 0.712276 1_1:+73902377 None:intergenic
AACGTGGAAGAGTGACTCAG+CGG 0.719906 1_1:+73902317 None:intergenic
GAAGCGATAGCAAGAAACGA+CGG 0.765356 1_1:+73902204 None:intergenic
TGGGCAGAAACAGATGACTG+AGG 0.793337 1_1:-73900086 Msa0042950:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTTTAAACAATCAAA+AGG - chr1_1:73901396-73901415 Msa0042950:intron 10.0%
!!! ACATGTTAACTTTTATTATT+TGG + chr1_1:73898671-73898690 None:intergenic 15.0%
!!! TTATTTTCCAAAATTTGATT+TGG - chr1_1:73899290-73899309 Msa0042950:intron 15.0%
!! CACTAATAATACATATATAT+AGG + chr1_1:73899635-73899654 None:intergenic 15.0%
!! AAAGAATTGTATACTTAATA+GGG + chr1_1:73900142-73900161 None:intergenic 15.0%
!! AAAAGAATTGTATACTTAAT+AGG + chr1_1:73900143-73900162 None:intergenic 15.0%
!!! ACAATTTTCTTTTATGTTAT+AGG - chr1_1:73900869-73900888 Msa0042950:intron 15.0%
!! AACTACATTATTCAAAAATA+GGG - chr1_1:73901558-73901577 Msa0042950:intron 15.0%
!! ATATATCAATAAAAGAACAA+AGG + chr1_1:73901965-73901984 None:intergenic 15.0%
!! ATAATAACATTGATATTGAA+AGG + chr1_1:73902146-73902165 None:intergenic 15.0%
!!! GAATGTAAAATAAACAATTT+TGG - chr1_1:73902308-73902327 Msa0042950:CDS 15.0%
!!! AACATTTTTTTATCGTAAAA+AGG - chr1_1:73902601-73902620 Msa0042950:five_prime_UTR 15.0%
!! TTAATACTGACAATTATACA+GGG + chr1_1:73899418-73899437 None:intergenic 20.0%
!! AACATCGAATCAATATATTT+AGG - chr1_1:73899888-73899907 Msa0042950:intron 20.0%
!! ACATCGAATCAATATATTTA+GGG - chr1_1:73899889-73899908 Msa0042950:intron 20.0%
!!! ATTCTTTTTCACTTATATCA+TGG - chr1_1:73900155-73900174 Msa0042950:intron 20.0%
!! CAAAAATATCTATATTCGAA+AGG + chr1_1:73900276-73900295 None:intergenic 20.0%
!!! CTTTCGAATATAGATATTTT+TGG - chr1_1:73900274-73900293 Msa0042950:CDS 20.0%
!! AAACAATGAATTCAAAGAAA+AGG + chr1_1:73900437-73900456 None:intergenic 20.0%
!! CAACTACATTATTCAAAAAT+AGG - chr1_1:73901557-73901576 Msa0042950:intron 20.0%
!! AATATCAATGTTATTATTGC+AGG - chr1_1:73902149-73902168 Msa0042950:CDS 20.0%
!!! TTTTTTAAGAAAAAAGGTGT+GGG + chr1_1:73902381-73902400 None:intergenic 20.0%
!!! TTTTTTTAAGAAAAAAGGTG+TGG + chr1_1:73902382-73902401 None:intergenic 20.0%
!!! CCAACTTTTTTTAAGAAAAA+AGG + chr1_1:73902387-73902406 None:intergenic 20.0%
!!! CCTTTTTTCTTAAAAAAAGT+TGG - chr1_1:73902384-73902403 Msa0042950:CDS 20.0%
!!! TTTTCTTAAAAAAAGTTGGA+AGG - chr1_1:73902388-73902407 Msa0042950:CDS 20.0%
!! TTTCTTAAAAAAAGTTGGAA+GGG - chr1_1:73902389-73902408 Msa0042950:CDS 20.0%
!! AATATATTGACACAAACTTA+TGG - chr1_1:73902484-73902503 Msa0042950:CDS 20.0%
! TGTTTGATAAAATACGCTTT+GGG + chr1_1:73898605-73898624 None:intergenic 25.0%
!!! TTATTATTTGGTGATGAGTT+TGG + chr1_1:73898659-73898678 None:intergenic 25.0%
!! ATCAACACCAAATCAAATTT+TGG + chr1_1:73899300-73899319 None:intergenic 25.0%
! CTTAATACTGACAATTATAC+AGG + chr1_1:73899419-73899438 None:intergenic 25.0%
! CTGTATAATTGTCAGTATTA+AGG - chr1_1:73899417-73899436 Msa0042950:intron 25.0%
! TTGTTATGATCTAGTAAAGT+AGG - chr1_1:73899500-73899519 Msa0042950:intron 25.0%
! TGTTGCAGATATTAAGATTA+TGG - chr1_1:73899587-73899606 Msa0042950:intron 25.0%
! ACTAAGAAGCTATTAACAAT+TGG - chr1_1:73899695-73899714 Msa0042950:intron 25.0%
! GGAAAATGATGATCAATAAT+GGG + chr1_1:73900006-73900025 None:intergenic 25.0%
! AGGAAAATGATGATCAATAA+TGG + chr1_1:73900007-73900026 None:intergenic 25.0%
! ACAATATTATCCTTCGAAAA+AGG + chr1_1:73900409-73900428 None:intergenic 25.0%
! AATGTGAAAAACACTTTGAA+TGG - chr1_1:73900520-73900539 Msa0042950:CDS 25.0%
! AGAGAGTAAAGAGAAAATAT+TGG + chr1_1:73900629-73900648 None:intergenic 25.0%
! TCTTTACTCTCTTTGATATT+GGG - chr1_1:73900637-73900656 Msa0042950:intron 25.0%
!!! ATTTTAGCCATTTCCTAATT+AGG - chr1_1:73901326-73901345 Msa0042950:intron 25.0%
!! TATTTGAAGTCTACCTAATT+AGG + chr1_1:73901342-73901361 None:intergenic 25.0%
! ATAATGTCTTGGATTTGTAA+AGG + chr1_1:73901648-73901667 None:intergenic 25.0%
! AGAATATCATGACAAATATC+AGG - chr1_1:73901890-73901909 Msa0042950:intron 25.0%
!! AAATACATATTGCCTTTTGA+AGG + chr1_1:73902539-73902558 None:intergenic 25.0%
! CTAATACAATGTGTTTAAAC+AGG + chr1_1:73902571-73902590 None:intergenic 25.0%
GTGTTTGATAAAATACGCTT+TGG + chr1_1:73898606-73898625 None:intergenic 30.0%
AAGAACAGTTCCAAATTTCT+CGG + chr1_1:73899195-73899214 None:intergenic 30.0%
! AACATTTTCAACCCAAATTG+AGG + chr1_1:73899255-73899274 None:intergenic 30.0%
!! CAATTTGGGTTGAAAATGTT+AGG - chr1_1:73899255-73899274 Msa0042950:intron 30.0%
! AGGACACAAAATTTCTAAAG+GGG + chr1_1:73899526-73899545 None:intergenic 30.0%
CAGGACACAAAATTTCTAAA+GGG + chr1_1:73899527-73899546 None:intergenic 30.0%
ACAGGACACAAAATTTCTAA+AGG + chr1_1:73899528-73899547 None:intergenic 30.0%
GTTTGATCCTTAGAATGATA+TGG - chr1_1:73899824-73899843 Msa0042950:intron 30.0%
GTACAATCCATATCATTCTA+AGG + chr1_1:73899834-73899853 None:intergenic 30.0%
TGTATACTTAATAGGGAACT+TGG + chr1_1:73900135-73900154 None:intergenic 30.0%
GTAATGAAGTAATGCTACAT+TGG + chr1_1:73900203-73900222 None:intergenic 30.0%
TGTAGCATTACTTCATTACT+CGG - chr1_1:73900204-73900223 Msa0042950:intron 30.0%
ACACTTTATAGCACTTACAT+TGG + chr1_1:73900300-73900319 None:intergenic 30.0%
!!! ATTCTTTGTTCCTTTTTCGA+AGG - chr1_1:73900396-73900415 Msa0042950:intron 30.0%
!! GAATTCATTGTTTCTACTGA+TGG - chr1_1:73900444-73900463 Msa0042950:intron 30.0%
GTTCGACACATAAATTGTTT+CGG - chr1_1:73900479-73900498 Msa0042950:CDS 30.0%
CACATTCAAAATCATACTCA+AGG + chr1_1:73900506-73900525 None:intergenic 30.0%
AAGTAGTGATTTACATGCAA+AGG + chr1_1:73900573-73900592 None:intergenic 30.0%
CTCTTTACTCTCTTTGATAT+TGG - chr1_1:73900636-73900655 Msa0042950:intron 30.0%
! TCTGATGTGAGACTATTTTA+TGG - chr1_1:73900734-73900753 Msa0042950:intron 30.0%
! CTGATGTGAGACTATTTTAT+GGG - chr1_1:73900735-73900754 Msa0042950:intron 30.0%
! TGATGTGAGACTATTTTATG+GGG - chr1_1:73900736-73900755 Msa0042950:intron 30.0%
TATAGGAGAGATTTAAAGAC+TGG - chr1_1:73900886-73900905 Msa0042950:intron 30.0%
ATAGGAGAGATTTAAAGACT+GGG - chr1_1:73900887-73900906 Msa0042950:intron 30.0%
AAACAATCTTTACCACTTGA+AGG + chr1_1:73901028-73901047 None:intergenic 30.0%
TCTTTCTTTCACTCTATGAT+AGG + chr1_1:73901230-73901249 None:intergenic 30.0%
!! CGACAGTAATGATTGTTTTT+AGG - chr1_1:73901250-73901269 Msa0042950:intron 30.0%
AAGTCTACCTAATTAGGAAA+TGG + chr1_1:73901336-73901355 None:intergenic 30.0%
!! CTTTGCAATTTTAATCATCG+CGG + chr1_1:73901368-73901387 None:intergenic 30.0%
! AAAATGCATGTCTCTTTTCT+TGG - chr1_1:73901470-73901489 Msa0042950:intron 30.0%
TTGGAAGAAGAAAGAAAAAG+AGG + chr1_1:73901531-73901550 None:intergenic 30.0%
AATAATGTAGTTGCAGTTGT+TGG + chr1_1:73901550-73901569 None:intergenic 30.0%
ATTATTCAAAAATAGGGTCC+TGG - chr1_1:73901564-73901583 Msa0042950:intron 30.0%
AAGAATCACCAAAACTAACA+AGG - chr1_1:73901616-73901635 Msa0042950:intron 30.0%
!! GGATAAAACCTTGTTAGTTT+TGG + chr1_1:73901627-73901646 None:intergenic 30.0%
!! ATGATGGATCAATAATGTCT+TGG + chr1_1:73901659-73901678 None:intergenic 30.0%
! TGACAACAATGTCATCATTT+TGG + chr1_1:73901687-73901706 None:intergenic 30.0%
TATCATGACAAATATCAGGA+AGG - chr1_1:73901894-73901913 Msa0042950:intron 30.0%
TAAAGAACTTCTGACCAAAA+TGG - chr1_1:73902220-73902239 Msa0042950:CDS 30.0%
! TTCTGACCAAAATGGAATTT+TGG - chr1_1:73902228-73902247 Msa0042950:CDS 30.0%
! ACAATGCCAAAATTCCATTT+TGG + chr1_1:73902237-73902256 None:intergenic 30.0%
!! TTTTGAAGGAAACAAAAGCT+TGG + chr1_1:73902525-73902544 None:intergenic 30.0%
!! AAGCTTTTGTTTCCTTCAAA+AGG - chr1_1:73902524-73902543 Msa0042950:CDS 30.0%
TTACAGATGCCAATTTATCA+GGG + chr1_1:73902667-73902686 None:intergenic 30.0%
ATTACAGATGCCAATTTATC+AGG + chr1_1:73902668-73902687 None:intergenic 30.0%
AGATGTCTTAGAAAAGTGAG+TGG + chr1_1:73898498-73898517 None:intergenic 35.0%
ATCTTCCACTCCAATTCTAT+CGG - chr1_1:73898521-73898540 Msa0042950:three_prime_UTR 35.0%
TGTCTAATTGAGGGTTATCA+CGG + chr1_1:73898575-73898594 None:intergenic 35.0%
TTTAAGCTGAAGATACTGAC+CGG + chr1_1:73898973-73898992 None:intergenic 35.0%
CAGTATCTTCAGCTTAAAGT+CGG - chr1_1:73898975-73898994 Msa0042950:three_prime_UTR 35.0%
!!! TTTTTGGTGAAGAGTGTTGT+TGG - chr1_1:73899071-73899090 Msa0042950:intron 35.0%
!!! TTTTGGTGAAGAGTGTTGTT+GGG - chr1_1:73899072-73899091 Msa0042950:intron 35.0%
! GGAATGGGTTTGATATTAGT+CGG - chr1_1:73899159-73899178 Msa0042950:intron 35.0%
AGAACAGTTCCAAATTTCTC+GGG + chr1_1:73899194-73899213 None:intergenic 35.0%
TTAGTGATTCATTGGCACTA+TGG - chr1_1:73899547-73899566 Msa0042950:intron 35.0%
! ATTATTAGTGCCACTCTGTT+CGG - chr1_1:73899645-73899664 Msa0042950:intron 35.0%
ATGACACATTCACAACCTAA+AGG + chr1_1:73899726-73899745 None:intergenic 35.0%
! TTAGGTTGTGAATGTGTCAT+TGG - chr1_1:73899726-73899745 Msa0042950:intron 35.0%
ACTCTTGCACTTACTTTCTT+TGG + chr1_1:73899806-73899825 None:intergenic 35.0%
TGGATTGTACTGAATGTACT+CGG - chr1_1:73899844-73899863 Msa0042950:intron 35.0%
GCTTGGATTTGCACATAAAT+AGG + chr1_1:73900027-73900046 None:intergenic 35.0%
ATCGTAAAATCAAGGAAGCT+TGG + chr1_1:73900044-73900063 None:intergenic 35.0%
GGCTATTCATCGTAAAATCA+AGG + chr1_1:73900052-73900071 None:intergenic 35.0%
TTACGATTCAAAATCGCTTG+TGG + chr1_1:73900108-73900127 None:intergenic 35.0%
TTATTGTGTGCAGTCCAATT+CGG - chr1_1:73900675-73900694 Msa0042950:intron 35.0%
CAAGGCTTCATATTGTCAAA+AGG + chr1_1:73900812-73900831 None:intergenic 35.0%
TTTAAAGACTGGGAATCTTC+CGG - chr1_1:73900897-73900916 Msa0042950:intron 35.0%
! AGGTAAAGTGTGTGGAATTT+TGG - chr1_1:73900985-73901004 Msa0042950:intron 35.0%
ATAGACATGATTACCTTTGC+AGG - chr1_1:73901048-73901067 Msa0042950:intron 35.0%
TAACTAAACAAGAACGACAG+TGG + chr1_1:73901197-73901216 None:intergenic 35.0%
!! AGTTTTGGTGATTCTTCTAC+CGG + chr1_1:73901612-73901631 None:intergenic 35.0%
! CATCATTTTGGACAGTATGA+TGG + chr1_1:73901675-73901694 None:intergenic 35.0%
ATGATGACATTGTTGTCACT+CGG - chr1_1:73901689-73901708 Msa0042950:intron 35.0%
ATGGAACATCCTTTCCAAAA+TGG + chr1_1:73901740-73901759 None:intergenic 35.0%
!! ATTTTGGAAAGGATGTTCCA+TGG - chr1_1:73901739-73901758 Msa0042950:intron 35.0%
TGTCATGATATTCTCCCAAT+TGG + chr1_1:73901884-73901903 None:intergenic 35.0%
AGCGTCAATAAGTTTCAACT+AGG - chr1_1:73902082-73902101 Msa0042950:CDS 35.0%
ACATCTATTCTTGTTGCTGA+TGG - chr1_1:73902177-73902196 Msa0042950:CDS 35.0%
TTTGAATTATGCCTTTGCTG+AGG - chr1_1:73902267-73902286 Msa0042950:CDS 35.0%
! CACTTTTGCAGCTCAAATAT+AGG - chr1_1:73902348-73902367 Msa0042950:CDS 35.0%
GAAACTATGCATTATCAGAG+AGG - chr1_1:73902453-73902472 Msa0042950:CDS 35.0%
ATCAGGGATCTACAGTTTAA+GGG + chr1_1:73902651-73902670 None:intergenic 35.0%
TATCAGGGATCTACAGTTTA+AGG + chr1_1:73902652-73902671 None:intergenic 35.0%
ACTGTAGATCCCTGATAAAT+TGG - chr1_1:73902655-73902674 Msa0042950:five_prime_UTR 35.0%
! TCTTGATGGTCCGATAGAAT+TGG + chr1_1:73898534-73898553 None:intergenic 40.0%
TTCTATCGGACCATCAAGAA+AGG - chr1_1:73898535-73898554 Msa0042950:three_prime_UTR 40.0%
ACGTGTCAAACCTTTCTTGA+TGG + chr1_1:73898548-73898567 None:intergenic 40.0%
ATCAAGAAAGGTTTGACACG+TGG - chr1_1:73898547-73898566 Msa0042950:three_prime_UTR 40.0%
GGTGCGTATTGTCTAATTGA+GGG + chr1_1:73898584-73898603 None:intergenic 40.0%
ATAGCAAGAAACGACGGTTT+CGG + chr1_1:73899008-73899027 None:intergenic 40.0%
!! GAGTGGTGTGTTTGAGTTTT+TGG - chr1_1:73899055-73899074 Msa0042950:intron 40.0%
GTCAGTTTCTGCCTCAATTT+GGG - chr1_1:73899241-73899260 Msa0042950:intron 40.0%
GTGTCCTGTTAGTGATTCAT+TGG - chr1_1:73899539-73899558 Msa0042950:intron 40.0%
AGTGCCAATGAATCACTAAC+AGG + chr1_1:73899546-73899565 None:intergenic 40.0%
ACAAAAAACTCCGAACAGAG+TGG + chr1_1:73899658-73899677 None:intergenic 40.0%
TAACAATTGGCGTTGCCTTT+AGG - chr1_1:73899708-73899727 Msa0042950:intron 40.0%
ATTGTACTGAATGTACTCGG+AGG - chr1_1:73899847-73899866 Msa0042950:intron 40.0%
AAGCTAAGCACAAGTCCATA+GGG - chr1_1:73899949-73899968 Msa0042950:intron 40.0%
! GCTATAAAGTGTTTCAGCCA+TGG - chr1_1:73900308-73900327 Msa0042950:CDS 40.0%
ATCACTCTACAAGTCTACCA+AGG + chr1_1:73900356-73900375 None:intergenic 40.0%
TGGTAGACTTGTAGAGTGAT+TGG - chr1_1:73900356-73900375 Msa0042950:intron 40.0%
GTTTCTGTTGCAACTCTATC+TGG - chr1_1:73900547-73900566 Msa0042950:intron 40.0%
GACTCAATAAGTGACCGAAT+TGG + chr1_1:73900692-73900711 None:intergenic 40.0%
ATTCGGTCACTTATTGAGTC+AGG - chr1_1:73900692-73900711 Msa0042950:intron 40.0%
ATTGAGTCAGGATTTGATGC+TGG - chr1_1:73900704-73900723 Msa0042950:intron 40.0%
TACAGGTACAATCTTGACAC+CGG + chr1_1:73900919-73900938 None:intergenic 40.0%
TCATCTGGTTGAGACAATAC+AGG + chr1_1:73900936-73900955 None:intergenic 40.0%
TGTCTCAACCAGATGATAGT+TGG - chr1_1:73900940-73900959 Msa0042950:intron 40.0%
CTTTGTACAGGTAAAGTGTG+TGG - chr1_1:73900977-73900996 Msa0042950:intron 40.0%
TTTGCTTGACTACCTTCAAG+TGG - chr1_1:73901013-73901032 Msa0042950:intron 40.0%
TTATCCAACCCTTTGTCAAC+TGG - chr1_1:73901094-73901113 Msa0042950:intron 40.0%
TTTAGGAAACCGAACCTACT+AGG - chr1_1:73901267-73901286 Msa0042950:intron 40.0%
CTCACTTACTACTTGTACAC+CGG - chr1_1:73901590-73901609 Msa0042950:intron 40.0%
TGATGACATTGTTGTCACTC+GGG - chr1_1:73901690-73901709 Msa0042950:intron 40.0%
!! TATGAGGGCATCATCATTGA+AGG - chr1_1:73901767-73901786 Msa0042950:intron 40.0%
ATCATCATTGAAGGAGCTAG+AGG - chr1_1:73901776-73901795 Msa0042950:intron 40.0%
GAACCCTCTCATACTTTATG+CGG + chr1_1:73901862-73901881 None:intergenic 40.0%
AAGTATGAGAGGGTTCCAAT+TGG - chr1_1:73901866-73901885 Msa0042950:intron 40.0%
AGTATGAGAGGGTTCCAATT+GGG - chr1_1:73901867-73901886 Msa0042950:intron 40.0%
AGATGTTTGATCCTCAGCAA+AGG + chr1_1:73902281-73902300 None:intergenic 40.0%
ATGGTCCGATAGAATTGGAG+TGG + chr1_1:73898529-73898548 None:intergenic 45.0%
GGGTGCGTATTGTCTAATTG+AGG + chr1_1:73898585-73898604 None:intergenic 45.0%
GTGATGAGTTTGGTCAGAGT+CGG + chr1_1:73898649-73898668 None:intergenic 45.0%
! GATGAGGCGGTGTTAATGAA+AGG + chr1_1:73898698-73898717 None:intergenic 45.0%
TGGTGGGGTTTAGATTGAAG+CGG + chr1_1:73898782-73898801 None:intergenic 45.0%
GAAGCGATAGCAAGAAACGA+CGG + chr1_1:73899014-73899033 None:intergenic 45.0%
CCACTCTTAATCGCAAGCTT+CGG + chr1_1:73899041-73899060 None:intergenic 45.0%
! CGTTGTGTGGGTTGAAGAAA+GGG - chr1_1:73899108-73899127 Msa0042950:intron 45.0%
! GTTGTGTGGGTTGAAGAAAG+GGG - chr1_1:73899109-73899128 Msa0042950:intron 45.0%
GGATGTTGTTGAGCTTAGTC+CGG - chr1_1:73899130-73899149 Msa0042950:intron 45.0%
TGTTGAGCTTAGTCCGGTTA+TGG - chr1_1:73899136-73899155 Msa0042950:intron 45.0%
GTTGAGCTTAGTCCGGTTAT+GGG - chr1_1:73899137-73899156 Msa0042950:intron 45.0%
TTGAGCTTAGTCCGGTTATG+GGG - chr1_1:73899138-73899157 Msa0042950:intron 45.0%
TTAGTCCGGTTATGGGGAAT+GGG - chr1_1:73899144-73899163 Msa0042950:intron 45.0%
TCAAACCCATTCCCCATAAC+CGG + chr1_1:73899152-73899171 None:intergenic 45.0%
CAGTTCCAAATTTCTCGGGT+GGG + chr1_1:73899190-73899209 None:intergenic 45.0%
ACAGTTCCAAATTTCTCGGG+TGG + chr1_1:73899191-73899210 None:intergenic 45.0%
ACTGTTCTTGTCTTTGCCAC+TGG - chr1_1:73899206-73899225 Msa0042950:intron 45.0%
GGCAGAAACTGACCTAATTC+CGG + chr1_1:73899234-73899253 None:intergenic 45.0%
GGTCAGTTTCTGCCTCAATT+TGG - chr1_1:73899240-73899259 Msa0042950:intron 45.0%
! GGTTGTGAATGTGTCATTGG+TGG - chr1_1:73899729-73899748 Msa0042950:intron 45.0%
ACCTAACTGATAGACAGTCG+AGG - chr1_1:73899755-73899774 Msa0042950:intron 45.0%
CCTAACTGATAGACAGTCGA+GGG - chr1_1:73899756-73899775 Msa0042950:intron 45.0%
CTAACTGATAGACAGTCGAG+GGG - chr1_1:73899757-73899776 Msa0042950:intron 45.0%
GAAGCTAAGCACAAGTCCAT+AGG - chr1_1:73899948-73899967 Msa0042950:intron 45.0%
GAAAAGTCTCCTTCTCCCTA+TGG + chr1_1:73899967-73899986 None:intergenic 45.0%
TGGCATAGCATAATTGGTCG+AGG + chr1_1:73900088-73900107 None:intergenic 45.0%
CGCTTGTGGCATAGCATAAT+TGG + chr1_1:73900094-73900113 None:intergenic 45.0%
TTTCAGCCATGGCTGTAAGA+GGG - chr1_1:73900319-73900338 Msa0042950:CDS 45.0%
CTCTACAAGTCTACCAAGGA+AGG + chr1_1:73900352-73900371 None:intergenic 45.0%
! AGCCATTCTCTTCAGGTTTC+TGG + chr1_1:73900762-73900781 None:intergenic 45.0%
CCTGATAAGCCATTCTCTTC+AGG + chr1_1:73900769-73900788 None:intergenic 45.0%
CCTGAAGAGAATGGCTTATC+AGG - chr1_1:73900766-73900785 Msa0042950:intron 45.0%
CAACCAGATGATAGTTGGAC+TGG - chr1_1:73900945-73900964 Msa0042950:intron 45.0%
TCTCCAGTCCAACTATCATC+TGG + chr1_1:73900951-73900970 None:intergenic 45.0%
! GATAGTTGGACTGGAGAAAG+TGG - chr1_1:73900954-73900973 Msa0042950:intron 45.0%
!! TGGAGAAAGTGGCTTTGTAC+AGG - chr1_1:73900965-73900984 Msa0042950:intron 45.0%
GTACAGCACCAGTTGACAAA+GGG + chr1_1:73901105-73901124 None:intergenic 45.0%
AGTACAGCACCAGTTGACAA+AGG + chr1_1:73901106-73901125 None:intergenic 45.0%
!! TCAACTGGTGCTGTACTTTG+TGG - chr1_1:73901109-73901128 Msa0042950:intron 45.0%
!! CAACTGGTGCTGTACTTTGT+GGG - chr1_1:73901110-73901129 Msa0042950:intron 45.0%
AGAGCTAGTCCTAGTAGGTT+CGG + chr1_1:73901279-73901298 None:intergenic 45.0%
ATTCCAGAGCTAGTCCTAGT+AGG + chr1_1:73901284-73901303 None:intergenic 45.0%
CAAGTAGTAAGTGAGCAACC+AGG + chr1_1:73901585-73901604 None:intergenic 45.0%
CTCGCTAGTCCAATTAAACC+AGG + chr1_1:73901716-73901735 None:intergenic 45.0%
!! CTGGTTTAATTGGACTAGCG+AGG - chr1_1:73901714-73901733 Msa0042950:intron 45.0%
TTGGAAAGGATGTTCCATGG+AGG - chr1_1:73901742-73901761 Msa0042950:intron 45.0%
! ATGTTCCATGGAGGAGTATG+AGG - chr1_1:73901751-73901770 Msa0042950:intron 45.0%
! TGTTCCATGGAGGAGTATGA+GGG - chr1_1:73901752-73901771 Msa0042950:intron 45.0%
TCATTGAAGGAGCTAGAGGA+TGG - chr1_1:73901780-73901799 Msa0042950:intron 45.0%
ACCACCGCATAAAGTATGAG+AGG - chr1_1:73901855-73901874 Msa0042950:intron 45.0%
CCACCGCATAAAGTATGAGA+GGG - chr1_1:73901856-73901875 Msa0042950:intron 45.0%
! TGAAGCAGCTAACTGGTTCA+CGG + chr1_1:73902013-73902032 None:intergenic 45.0%
TGAGAGATGAAGCAGCTAAC+TGG + chr1_1:73902020-73902039 None:intergenic 45.0%
CATCTCTCAATACAGTGTCC+TGG - chr1_1:73902031-73902050 Msa0042950:CDS 45.0%
AACACCAGTTGACACAAACC+AGG + chr1_1:73902052-73902071 None:intergenic 45.0%
GAGGATCAAACATCTCAGCA+TGG - chr1_1:73902286-73902305 Msa0042950:CDS 45.0%
AGGGATCTACAGTTTAAGGG+AGG + chr1_1:73902648-73902667 None:intergenic 45.0%
AGTTTGGTCAGAGTCGGAAG+TGG + chr1_1:73898643-73898662 None:intergenic 50.0%
TAGGATGGACATGGGAAAGG+GGG + chr1_1:73898757-73898776 None:intergenic 50.0%
GTAGGATGGACATGGGAAAG+GGG + chr1_1:73898758-73898777 None:intergenic 50.0%
CGTAGGATGGACATGGGAAA+GGG + chr1_1:73898759-73898778 None:intergenic 50.0%
TAGATTGAAGCGGCGTAGGA+TGG + chr1_1:73898772-73898791 None:intergenic 50.0%
GGTTTAGATTGAAGCGGCGT+AGG + chr1_1:73898776-73898795 None:intergenic 50.0%
AACGTGGAAGAGTGACTCAG+CGG + chr1_1:73898901-73898920 None:intergenic 50.0%
CTCTTAATCGCAAGCTTCGG+CGG + chr1_1:73899038-73899057 None:intergenic 50.0%
CCGAAGCTTGCGATTAAGAG+TGG - chr1_1:73899038-73899057 Msa0042950:CDS 50.0%
! GCGTTGTGTGGGTTGAAGAA+AGG - chr1_1:73899107-73899126 Msa0042950:intron 50.0%
CTTAGTCCGGTTATGGGGAA+TGG - chr1_1:73899143-73899162 Msa0042950:intron 50.0%
ATCGACCCACCCGAGAAATT+TGG - chr1_1:73899182-73899201 Msa0042950:intron 50.0%
CTTGTCTTTGCCACTGGATC+CGG - chr1_1:73899212-73899231 Msa0042950:intron 50.0%
TTGCCACTGGATCCGGAATT+AGG - chr1_1:73899219-73899238 Msa0042950:intron 50.0%
TGACCTAATTCCGGATCCAG+TGG + chr1_1:73899225-73899244 None:intergenic 50.0%
CCCTCGACTGTCTATCAGTT+AGG + chr1_1:73899759-73899778 None:intergenic 50.0%
ATAGACAGTCGAGGGGAACT+AGG - chr1_1:73899764-73899783 Msa0042950:intron 50.0%
AGCACAAGTCCATAGGGAGA+AGG - chr1_1:73899955-73899974 Msa0042950:intron 50.0%
GGTCGAGGCAAATTGACATG+TGG + chr1_1:73900073-73900092 None:intergenic 50.0%
GTTTCAGCCATGGCTGTAAG+AGG - chr1_1:73900318-73900337 Msa0042950:CDS 50.0%
AACTTGCCCTCTTACAGCCA+TGG + chr1_1:73900328-73900347 None:intergenic 50.0%
AGAGGGCAAGTTACCTTCCT+TGG - chr1_1:73900336-73900355 Msa0042950:intron 50.0%
CAGGATTTGATGCTGGCAAG+AGG - chr1_1:73900711-73900730 Msa0042950:intron 50.0%
GGCCAGAAACCTGAAGAGAA+TGG - chr1_1:73900757-73900776 Msa0042950:intron 50.0%
CTAGTACAGTACAGAGTCGC+AGG + chr1_1:73900838-73900857 None:intergenic 50.0%
CTCGTATATGCAGCCTGCAA+AGG + chr1_1:73901064-73901083 None:intergenic 50.0%
GGCTGCATATACGAGAGCAA+AGG - chr1_1:73901069-73901088 Msa0042950:intron 50.0%
AGCACCAGTTGACAAAGGGT+TGG + chr1_1:73901101-73901120 None:intergenic 50.0%
TGGGCAGAAACAGATGACTG+AGG - chr1_1:73901129-73901148 Msa0042950:intron 50.0%
!! GAACCTACTAGGACTAGCTC+TGG - chr1_1:73901278-73901297 Msa0042950:intron 50.0%
TCACTCGGGCCTGGTTTAAT+TGG - chr1_1:73901704-73901723 Msa0042950:intron 50.0%
!!! TTGGACTAGCGAGGCCATTT+TGG - chr1_1:73901723-73901742 Msa0042950:intron 50.0%
!! CTAGCGAGGCCATTTTGGAA+AGG - chr1_1:73901728-73901747 Msa0042950:intron 50.0%
!! GGATGGATTGCCAGTTAAGC+TGG - chr1_1:73901797-73901816 Msa0042950:intron 50.0%
! TTGCCAGTTAAGCTGGCTCT+TGG - chr1_1:73901804-73901823 Msa0042950:intron 50.0%
! TGCCAGTTAAGCTGGCTCTT+GGG - chr1_1:73901805-73901824 Msa0042950:intron 50.0%
CCCTCTCATACTTTATGCGG+TGG + chr1_1:73901859-73901878 None:intergenic 50.0%
! GAAGCAGCTAACTGGTTCAC+GGG + chr1_1:73902012-73902031 None:intergenic 50.0%
! GTGTCCTGGTTTGTGTCAAC+TGG - chr1_1:73902045-73902064 Msa0042950:CDS 50.0%
GGGTCTATTACTGCACACTC+TGG - chr1_1:73902409-73902428 Msa0042950:CDS 50.0%
TTGGTCAGAGTCGGAAGTGG+CGG + chr1_1:73898640-73898659 None:intergenic 55.0%
TGGAGGGTAAGAGGATGAGG+CGG + chr1_1:73898711-73898730 None:intergenic 55.0%
GAGTGGAGGGTAAGAGGATG+AGG + chr1_1:73898714-73898733 None:intergenic 55.0%
AAAGTGCGCATGGGAGTGGA+GGG + chr1_1:73898727-73898746 None:intergenic 55.0%
TAAAGTGCGCATGGGAGTGG+AGG + chr1_1:73898728-73898747 None:intergenic 55.0%
GCGTAGGATGGACATGGGAA+AGG + chr1_1:73898760-73898779 None:intergenic 55.0%
AAGCGGCGTAGGATGGACAT+GGG + chr1_1:73898765-73898784 None:intergenic 55.0%
AAAGGGTTGCGAGTCGGTGA+CGG + chr1_1:73898815-73898834 None:intergenic 55.0%
GACGGTGGTGTCTTGACGTA+CGG + chr1_1:73898844-73898863 None:intergenic 55.0%
TACGTCAAGACACCACCGTC+TGG - chr1_1:73898844-73898863 Msa0042950:three_prime_UTR 55.0%
CGGAAACGTCGATGGAAACG+TGG + chr1_1:73898917-73898936 None:intergenic 55.0%
TGTGAGACGTGGCAAGGTCA+GGG + chr1_1:73898944-73898963 None:intergenic 55.0%
!! TCCACTGCAGAAGCGTTGTG+TGG - chr1_1:73899095-73899114 Msa0042950:intron 55.0%
!! CCACTGCAGAAGCGTTGTGT+GGG - chr1_1:73899096-73899115 Msa0042950:intron 55.0%
GTACAGAGTCGCAGGTCACA+AGG + chr1_1:73900830-73900849 None:intergenic 55.0%
ACATTGTTGTCACTCGGGCC+TGG - chr1_1:73901695-73901714 Msa0042950:intron 55.0%
GATGCCCTCATACTCCTCCA+TGG + chr1_1:73901759-73901778 None:intergenic 55.0%
! GCCAGTTAAGCTGGCTCTTG+GGG - chr1_1:73901806-73901825 Msa0042950:intron 55.0%
! CCAGTTAAGCTGGCTCTTGG+GGG - chr1_1:73901807-73901826 Msa0042950:intron 55.0%
GCATGGGAGTGGAGGGTAAG+AGG + chr1_1:73898720-73898739 None:intergenic 60.0%
CGCTAAAGTGCGCATGGGAG+TGG + chr1_1:73898731-73898750 None:intergenic 60.0%
GGTGGCGCTAAAGTGCGCAT+GGG + chr1_1:73898736-73898755 None:intergenic 60.0%
GATGGACATGGGAAAGGGGG+TGG + chr1_1:73898754-73898773 None:intergenic 60.0%
GAAGCGGCGTAGGATGGACA+TGG + chr1_1:73898766-73898785 None:intergenic 60.0%
TGACGGAGACGGTGGTTGGT+GGG + chr1_1:73898798-73898817 None:intergenic 60.0%
!! TTGCGAGTCGGTGACGGAGA+CGG + chr1_1:73898809-73898828 None:intergenic 60.0%
TTGACGTACGGCGGCGGAAA+GGG + chr1_1:73898832-73898851 None:intergenic 60.0%
GGTGGTGTCTTGACGTACGG+CGG + chr1_1:73898841-73898860 None:intergenic 60.0%
GAGAGGAGCTGGAGTCCAGA+CGG + chr1_1:73898862-73898881 None:intergenic 60.0%
TCGATCTCGGAGAGAGGAGC+TGG + chr1_1:73898873-73898892 None:intergenic 60.0%
GCAGGTTCGATCTCGGAGAG+AGG + chr1_1:73898879-73898898 None:intergenic 60.0%
CTCAGCGGCAGGTTCGATCT+CGG + chr1_1:73898886-73898905 None:intergenic 60.0%
TGGAAGAGTGACTCAGCGGC+AGG + chr1_1:73898897-73898916 None:intergenic 60.0%
GTGAGACGTGGCAAGGTCAG+GGG + chr1_1:73898943-73898962 None:intergenic 60.0%
GTGTGAGACGTGGCAAGGTC+AGG + chr1_1:73898945-73898964 None:intergenic 60.0%
CCCACACAACGCTTCTGCAG+TGG + chr1_1:73899099-73899118 None:intergenic 60.0%
CCCCCAAGAGCCAGCTTAAC+TGG + chr1_1:73901810-73901829 None:intergenic 60.0%
GGGGGCAGTGGGACAGAAAA+CGG - chr1_1:73901825-73901844 Msa0042950:intron 60.0%
AGTCGGAAGTGGCGGCAGGA+GGG + chr1_1:73898632-73898651 None:intergenic 65.0%
TCAGAGTCGGAAGTGGCGGC+AGG + chr1_1:73898636-73898655 None:intergenic 65.0%
GGGTGGCGCTAAAGTGCGCA+TGG + chr1_1:73898737-73898756 None:intergenic 65.0%
! GACGGAGACGGTGGTTGGTG+GGG + chr1_1:73898797-73898816 None:intergenic 65.0%
! GTGACGGAGACGGTGGTTGG+TGG + chr1_1:73898799-73898818 None:intergenic 65.0%
!! TCGGTGACGGAGACGGTGGT+TGG + chr1_1:73898802-73898821 None:intergenic 65.0%
CGGCGGAAAGGGTTGCGAGT+CGG + chr1_1:73898821-73898840 None:intergenic 65.0%
CTTGACGTACGGCGGCGGAA+AGG + chr1_1:73898833-73898852 None:intergenic 65.0%
GGTGTCTTGACGTACGGCGG+CGG + chr1_1:73898838-73898857 None:intergenic 65.0%
AGGAGCTGGAGTCCAGACGG+TGG + chr1_1:73898859-73898878 None:intergenic 65.0%
!! AGGGGCGTCGGAAACGTCGA+TGG + chr1_1:73898925-73898944 None:intergenic 65.0%
CGCGTGTGTGAGACGTGGCA+AGG + chr1_1:73898950-73898969 None:intergenic 65.0%
! AAGCTGGCTCTTGGGGGCAG+TGG - chr1_1:73901813-73901832 Msa0042950:intron 65.0%
! AGCTGGCTCTTGGGGGCAGT+GGG - chr1_1:73901814-73901833 Msa0042950:intron 65.0%
GTCGGAAGTGGCGGCAGGAG+GGG + chr1_1:73898631-73898650 None:intergenic 70.0%
GAGTCGGAAGTGGCGGCAGG+AGG + chr1_1:73898633-73898652 None:intergenic 70.0%
!! CGAGTCGGTGACGGAGACGG+TGG + chr1_1:73898806-73898825 None:intergenic 70.0%
! CGTGGCAAGGTCAGGGGCGT+CGG + chr1_1:73898937-73898956 None:intergenic 70.0%
GCCACGTCTCACACACGCGC+CGG - chr1_1:73898951-73898970 Msa0042950:three_prime_UTR 70.0%
ACCGGCGCGTGTGTGAGACG+TGG + chr1_1:73898955-73898974 None:intergenic 70.0%
GGAAGTGGCGGCAGGAGGGG+CGG + chr1_1:73898628-73898647 None:intergenic 75.0%
Chromosome Type Strat End Strand Name
chr1_1 gene 73898492 73902745 73898492 ID=Msa0042950;Name=Msa0042950
chr1_1 mRNA 73898492 73902745 73898492 ID=Msa0042950-mRNA-1;Parent=Msa0042950;Name=Msa0042950-mRNA-1;_AED=0.06;_eAED=0.06;_QI=195|1|1|1|0.75|1|5|512|297
chr1_1 exon 73898492 73899066 73898492 ID=Msa0042950-mRNA-1:exon:24821;Parent=Msa0042950-mRNA-1
chr1_1 exon 73900087 73900167 73900087 ID=Msa0042950-mRNA-1:exon:24820;Parent=Msa0042950-mRNA-1
chr1_1 exon 73900251 73900346 73900251 ID=Msa0042950-mRNA-1:exon:24819;Parent=Msa0042950-mRNA-1
chr1_1 exon 73900450 73900549 73900450 ID=Msa0042950-mRNA-1:exon:24818;Parent=Msa0042950-mRNA-1
chr1_1 exon 73901997 73902745 73901997 ID=Msa0042950-mRNA-1:exon:24817;Parent=Msa0042950-mRNA-1
chr1_1 five_prime_UTR 73902551 73902745 73902551 ID=Msa0042950-mRNA-1:five_prime_utr;Parent=Msa0042950-mRNA-1
chr1_1 CDS 73901997 73902550 73901997 ID=Msa0042950-mRNA-1:cds;Parent=Msa0042950-mRNA-1
chr1_1 CDS 73900450 73900549 73900450 ID=Msa0042950-mRNA-1:cds;Parent=Msa0042950-mRNA-1
chr1_1 CDS 73900251 73900346 73900251 ID=Msa0042950-mRNA-1:cds;Parent=Msa0042950-mRNA-1
chr1_1 CDS 73900087 73900167 73900087 ID=Msa0042950-mRNA-1:cds;Parent=Msa0042950-mRNA-1
chr1_1 CDS 73899004 73899066 73899004 ID=Msa0042950-mRNA-1:cds;Parent=Msa0042950-mRNA-1
chr1_1 three_prime_UTR 73898492 73899003 73898492 ID=Msa0042950-mRNA-1:three_prime_utr;Parent=Msa0042950-mRNA-1
Gene Sequence

>Msa0042950

ATGTCACTCCTTTCATTAACACCGCCTCATCCTCTTACCCTCCACTCCCATGCGCACTTTAGCGCCACCCCCTTTCCCATGTCCATCCTACGCCGCTTCAATCTAAACCCCACCAACCACCGTCTCCGTCACCGACTCGCAACCCTTTCCGCCGCCGTACGTCAAGACACCACCGTCTGGACTCCAGCTCCTCTCTCCGAGATCGAACCTGCCGCTGAGTCACTCTTCCACGTTTCCATCGACGTTTCCGACGCCCCTGACCTTGCCACGTCTCACACACGCGCCGGTCAGTATCTTCAGCTTAAAGTCGGTGATTCGCCGAAACCGTCGTTTCTTGCTATCGCTTCGCCGCCGAAGCTTGCGATTAAGAGTGGTGTGTTTGAGTTTTTGGTGAAGAGTGTTGTTGGGTCCACTGCAGAAGCGTTGTGTGGGTTGAAGAAAGGGGATGTTGTTGAGCTTAGTCCGGTTATGGGGAATGGGTTTGATATTAGTCGGATCGACCCACCCGAGAAATTTGGAACTGTTCTTGTCTTTGCCACTGGATCCGGAATTAGTCCAATTCGGTCACTTATTGAGTCAGGATTTGATGCTGGCAAGAGGTCTGATGTGAGACTATTTTATGGGGCCAGAAACCTGAAGAGAATGGCTTATCAGGAGAGATTTAAAGACTGGGAATCTTCCGGTGTCAAGATTGTACCTGTATTGTCTCAACCAGATGATAGTTGGACTGGAGAAAGTGGCTTTGTACAGGCTGCATATACGAGAGCAAAGGAATTATCCAACCCTTTGTCAACTGGTGCTGTACTTTGTGGGCAGAAACAGATGACTGAGGAAATTACATCTATTCTTGTTGCTGATGGAGTATCAGCTGAGAAGATACTAAAGAACTTCTGA
Protein sequence

>Msa0042950

MSLLSLTPPHPLTLHSHAHFSATPFPMSILRRFNLNPTNHRLRHRLATLSAAVRQDTTVWTPAPLSEIEPAAESLFHVSIDVSDAPDLATSHTRAGQYLQLKVGDSPKPSFLAIASPPKLAIKSGVFEFLVKSVVGSTAEALCGLKKGDVVELSPVMGNGFDISRIDPPEKFGTVLVFATGSGISPIRSLIESGFDAGKRSDVRLFYGARNLKRMAYQERFKDWESSGVKIVPVLSQPDDSWTGESGFVQAAYTRAKELSNPLSTGAVLCGQKQMTEEITSILVADGVSAEKILKNF*