AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0750530

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750530 MtrunA17_Chr5g0395811 98.234 623 9 2 1 623 1 621 0.0 1247
Msa0750530 MtrunA17_Chr4g0039531 55.078 512 197 12 126 623 244 736 3.56e-159 474
Msa0750530 MtrunA17_Chr4g0039531 70.139 144 38 2 10 148 2 145 1.48e-56 203
Msa0750530 MtrunA17_Chr8g0341521 67.857 112 36 0 10 121 19 130 3.66e-41 160
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0750530 AT3G03140.1 36.673 529 278 20 125 609 243 758 3.99e-65 228
Msa0750530 AT3G03140.1 74.400 125 32 0 1 125 1 125 6.12e-56 202
Msa0750530 AT3G21295.3 63.158 114 42 0 8 121 11 124 8.08e-40 153
Msa0750530 AT3G21295.2 60.833 120 47 0 2 121 5 124 3.26e-39 153
Msa0750530 AT3G21295.1 63.158 114 42 0 8 121 11 124 3.28e-39 153
Msa0750530 AT1G51745.1 54.098 122 54 1 2 123 5 124 3.48e-33 135

Find 214 sgRNAs with CRISPR-Local

Find 444 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCTCTTGTGGTTTAAA+TGG 0.164129 5_2:-3979380 None:intergenic
TAACAGAGATTGGTATAATT+TGG 0.169000 5_2:+3975686 Msa0750530:intron
CACAAAATTTCAATCAGATT+TGG 0.200228 5_2:-3974668 None:intergenic
ACAAAATTTCAATCAGATTT+GGG 0.249464 5_2:-3974667 None:intergenic
TTGCAACCTCTCTAGGAGTT+AGG 0.253177 5_2:-3979488 None:intergenic
CAATAGGGACTGACTCTTTC+GGG 0.255657 5_2:-3979677 None:intergenic
AATGGATATAAGAGATTAAA+TGG 0.257606 5_2:+3979957 Msa0750530:CDS
TGGAACTCCGGTTAAGCTTC+TGG 0.266144 5_2:+3974969 Msa0750530:CDS
ATTATTTCTTTCCTGATCTA+AGG 0.266623 5_2:-3979937 None:intergenic
TCTTCTGTTTATCAGTCTTC+AGG 0.275069 5_2:-3980495 None:intergenic
GCGCCGTTGGATCCCTTGTT+TGG 0.280360 5_2:+3974860 Msa0750530:CDS
TGCTTTCAGTAGTGTGGATT+AGG 0.289825 5_2:-3974692 None:intergenic
CGCCGTTGGATCCCTTGTTT+GGG 0.307336 5_2:+3974861 Msa0750530:CDS
CTACTAAATACCAGTTTAAC+TGG 0.311660 5_2:-3980233 None:intergenic
GATTACTTGAGAAGATTAAT+AGG 0.314220 5_2:+3980255 Msa0750530:CDS
CTAAGGAAACAAGATAAATT+AGG 0.318396 5_2:+3975864 Msa0750530:CDS
TTAGATGGGAGTTCTATAAT+TGG 0.320462 5_2:+3979717 Msa0750530:CDS
TATCAGTCTTCAGGATGAAT+TGG 0.320732 5_2:-3980486 None:intergenic
GAGATGGATGGGGAGGGTTT+AGG 0.322136 5_2:+3974826 Msa0750530:exon
GCCTGCTTTGAAAGAATATT+CGG 0.324033 5_2:+3979554 Msa0750530:CDS
CAACTTGGGGAGTATGCTTA+TGG 0.325361 5_2:+3976858 Msa0750530:CDS
GTATCCAAATGGCAATTAAA+AGG 0.330224 5_2:+3979261 Msa0750530:CDS
TAGAAGGACCGGTTTGGATT+TGG 0.333856 5_2:-3974578 None:intergenic
ACCACGACCCGTTTCTTCTT+CGG 0.334820 5_2:-3974885 None:intergenic
GTCAAACAAGTTCTCAGTTT+CGG 0.347282 5_2:-3980758 None:intergenic
ATCAGTCTTCAGGATGAATT+GGG 0.353757 5_2:-3980485 None:intergenic
ATAACCGTAACCTTGTAAAA+AGG 0.356178 5_2:+3979292 Msa0750530:CDS
TGAAACTGCTTCTATTAAAT+CGG 0.357173 5_2:+3976941 Msa0750530:CDS
CCAATATCATCTTCCCAACT+TGG 0.357429 5_2:+3976843 Msa0750530:CDS
TTAGATCAGGAAAGAAATAA+TGG 0.359142 5_2:+3979939 Msa0750530:CDS
CCAAGTTGGGAAGATGATAT+TGG 0.359457 5_2:-3976843 None:intergenic
AAAATATGAGCAATTTAAGT+TGG 0.363830 5_2:+3980693 Msa0750530:three_prime_UTR
TGAAGTTTGAATCTTCTAGA+AGG 0.364578 5_2:-3974594 None:intergenic
CCATCCTTAAGGACTTCAAT+TGG 0.381058 5_2:-3979750 None:intergenic
TTGCTCGTAATAGATACAAT+AGG 0.381680 5_2:-3979693 None:intergenic
TGCAACCTCTCTAGGAGTTA+GGG 0.381710 5_2:-3979487 None:intergenic
GGGAGGGGAGGAGATGGATG+GGG 0.386941 5_2:+3974816 Msa0750530:exon
TTCGAGGTTCCCGCGGATAA+AGG 0.387198 5_2:-3979224 None:intergenic
GCATCTGCCTTTCAAGCTCC+AGG 0.391605 5_2:-3975842 None:intergenic
ATGACTAAACCAGAGGTCTC+TGG 0.391626 5_2:+3980188 Msa0750530:CDS
ACAATAGGGACTGACTCTTT+CGG 0.391982 5_2:-3979678 None:intergenic
AATCGTATTTAATTGATTGT+TGG 0.393488 5_2:+3980433 Msa0750530:three_prime_UTR
TCTCTTCCCAGAAGCTTAAC+CGG 0.395300 5_2:-3974976 None:intergenic
AAATATGAGCAATTTAAGTT+GGG 0.398243 5_2:+3980694 Msa0750530:three_prime_UTR
GCGGAGGGGAGGGGAGGAGA+TGG 0.399238 5_2:+3974810 Msa0750530:exon
AAGAAACGGGTCGTGGTGGC+CGG 0.399939 5_2:+3974891 Msa0750530:CDS
TTATCTATTGAAGATAATCT+TGG 0.404235 5_2:+3980122 Msa0750530:CDS
GATGACAGCGATCAAATGTT+TGG 0.412210 5_2:+3979447 Msa0750530:CDS
AGGGGAGGGGAGGAGATGGA+TGG 0.415178 5_2:+3974814 Msa0750530:exon
TCTGAACGGCTTCACTCGCT+TGG 0.416919 5_2:-3975715 None:intergenic
TGAGAAGCGGCAAGGTCATC+AGG 0.419003 5_2:-3974928 None:intergenic
ACCGTATCAATTCATCAAGC+TGG 0.421376 5_2:+3974768 Msa0750530:five_prime_UTR
AGGGGAGGAGATGGATGGGG+AGG 0.421381 5_2:+3974819 Msa0750530:exon
AAAAGTTAAGCGGAGGGGAG+GGG 0.422206 5_2:+3974801 Msa0750530:five_prime_UTR
CACATTTGCTCCTCTTTGCT+CGG 0.423627 5_2:-3976761 None:intergenic
TCTATTACGAGCAAGTTAGA+TGG 0.426232 5_2:+3979702 Msa0750530:CDS
TAAGGACTTCAATTGGGATT+GGG 0.426606 5_2:-3979743 None:intergenic
GGGGAGGGGAGGAGATGGAT+GGG 0.427742 5_2:+3974815 Msa0750530:exon
GCTTTCAGTAGTGTGGATTA+GGG 0.428399 5_2:-3974691 None:intergenic
CATCTGACCTCACCTCGATC+TGG 0.430909 5_2:+3974949 Msa0750530:CDS
AGCTTGCATACCAGTTAAAC+TGG 0.431814 5_2:+3980223 Msa0750530:CDS
TTGACGGCCCGGCATTGTTA+AGG 0.432666 5_2:-3980022 None:intergenic
TGAAAGGGCGGAGACAGCTC+TGG 0.433854 5_2:+3975761 Msa0750530:CDS
ATCTTCTAGAAGGACCGGTT+TGG 0.434842 5_2:-3974584 None:intergenic
AACATTTGATCGCTGTCATC+AGG 0.436781 5_2:-3979444 None:intergenic
TTCAATAGATAAAGAGGAAA+GGG 0.436850 5_2:-3980111 None:intergenic
GCCTGAGTCTAGTGATTCTC+TGG 0.439209 5_2:+3976794 Msa0750530:CDS
AAGGACTTCTTGTCAATTGA+CGG 0.439535 5_2:-3980038 None:intergenic
AGATGTAGACTTGAAGGTTC+AGG 0.441230 5_2:+3979647 Msa0750530:CDS
CATTTAAACCACAAGAGAAT+GGG 0.443241 5_2:+3979381 Msa0750530:CDS
TTAAGGACTTCAATTGGGAT+TGG 0.443487 5_2:-3979744 None:intergenic
GGAACTCCGGTTAAGCTTCT+GGG 0.446719 5_2:+3974970 Msa0750530:CDS
AGCTCTATTTGATGATTGAT+AGG 0.450091 5_2:+3980622 Msa0750530:three_prime_UTR
AATCCCAATTGAAGTCCTTA+AGG 0.453310 5_2:+3979746 Msa0750530:CDS
CTATAGTCATTTCTGTAGTA+AGG 0.453653 5_2:-3979414 None:intergenic
GCCTTTCAAGCTCCAGGGCG+TGG 0.453849 5_2:-3975836 None:intergenic
GCTGGTAGATGTAGACTTGA+AGG 0.453903 5_2:+3979641 Msa0750530:CDS
ATTATCTTCAATAGATAAAG+AGG 0.455659 5_2:-3980117 None:intergenic
AGCTGTCTCCGCCCTTTCAA+TGG 0.456193 5_2:-3975757 None:intergenic
CATCCTTAAGGACTTCAATT+GGG 0.457744 5_2:-3979749 None:intergenic
AGTGATCCTTATCATTATGA+TGG 0.463734 5_2:+3979603 Msa0750530:CDS
CCATTTAAACCACAAGAGAA+TGG 0.464770 5_2:+3979380 Msa0750530:CDS
GGTCTGTTGCTGCTTCTGAT+AGG 0.470300 5_2:+3979313 Msa0750530:CDS
TGTCAGTTGAGCCATCCTTA+AGG 0.470737 5_2:-3979761 None:intergenic
CAATATCATCTTCCCAACTT+GGG 0.470747 5_2:+3976844 Msa0750530:CDS
TGTAACTAATCCTAGTTGTA+AGG 0.471691 5_2:-3974495 None:intergenic
TGAAGACTTCTCCTTAGATC+AGG 0.472242 5_2:+3979926 Msa0750530:CDS
TCCGAATATTCTTTCAAAGC+AGG 0.474772 5_2:-3979555 None:intergenic
GGTGCAGAGGATTGCGCCGT+TGG 0.476058 5_2:+3974847 Msa0750530:CDS
GTTTGGGTCCGAAGAAGAAA+CGG 0.476480 5_2:+3974877 Msa0750530:CDS
AATTTGATGCATCCATTGAA+AGG 0.477697 5_2:+3975745 Msa0750530:CDS
CAACATTTGATGACGATATG+TGG 0.479561 5_2:-3979902 None:intergenic
CATAAGCATACTCCCCAAGT+TGG 0.481163 5_2:-3976857 None:intergenic
TTTGGGTCCGAAGAAGAAAC+GGG 0.485259 5_2:+3974878 Msa0750530:CDS
TGCTCGTAATAGATACAATA+GGG 0.488620 5_2:-3979692 None:intergenic
AGTTAAGCGGAGGGGAGGGG+AGG 0.491607 5_2:+3974804 Msa0750530:five_prime_UTR
TAATAATTATCTTGCAGTGA+TGG 0.493971 5_2:+3980370 Msa0750530:three_prime_UTR
TTTGAATCTTCTAGAAGGAC+CGG 0.496692 5_2:-3974589 None:intergenic
CTCCTCGCAGTCCTCCAAGC+TGG 0.497373 5_2:-3979852 None:intergenic
GTGATGGCACAACAAATTGC+TGG 0.497763 5_2:+3980386 Msa0750530:three_prime_UTR
ATCATTAACCAAATCCAAAC+CGG 0.498808 5_2:+3974570 Msa0750530:five_prime_UTR
AGAAACGGGTCGTGGTGGCC+GGG 0.499873 5_2:+3974892 Msa0750530:CDS
CCGTATCAATTCATCAAGCT+GGG 0.506076 5_2:+3974769 Msa0750530:five_prime_UTR
GTGATCCTTATCATTATGAT+GGG 0.506423 5_2:+3979604 Msa0750530:CDS
TAAGGCCGTTCTTCTTCCAA+TGG 0.508139 5_2:-3980004 None:intergenic
AACCAGGCCCCATTCTCTTG+TGG 0.510552 5_2:-3979389 None:intergenic
GGCGCAACCGCCGCCGGTGA+AGG 0.510950 5_2:-3974745 None:intergenic
ATAAGCATACTCCCCAAGTT+GGG 0.516000 5_2:-3976856 None:intergenic
CCAATGGCTTGCATTATGAC+TGG 0.516730 5_2:-3979988 None:intergenic
TCCACGCCCTGGAGCTTGAA+AGG 0.516755 5_2:+3975835 Msa0750530:CDS
TACGGTGGCGCAACCGCCGC+CGG 0.516951 5_2:-3974751 None:intergenic
AACATTTGATGACGATATGT+GGG 0.517456 5_2:-3979901 None:intergenic
AAGGTCTTGATTGGGATGAA+TGG 0.518276 5_2:+3979517 Msa0750530:CDS
CGGTGTAGAGCATACAAGTA+GGG 0.521947 5_2:-3980738 None:intergenic
ACAGCTTCATTGCACGTTCG+AGG 0.523686 5_2:-3979240 None:intergenic
AGAACGGCCTTAACAATGCC+GGG 0.524186 5_2:+3980015 Msa0750530:CDS
GACTTCAGTAATGATATGAT+TGG 0.524533 5_2:+3979804 Msa0750530:CDS
AGCTTGAAAGGCAGATGCTA+AGG 0.525873 5_2:+3975847 Msa0750530:CDS
ATTTGATGCATCCATTGAAA+GGG 0.526659 5_2:+3975746 Msa0750530:CDS
CAAAATTTCAATCAGATTTG+GGG 0.526980 5_2:-3974666 None:intergenic
TTATATGGAGCAGATATTGA+AGG 0.527413 5_2:+3979348 Msa0750530:CDS
TTCTTCTTCGGACCCAAACA+AGG 0.527567 5_2:-3974873 None:intergenic
TGACTAAACCAGAGGTCTCT+GGG 0.528670 5_2:+3980189 Msa0750530:CDS
CTCACCTCGATCTGGAACTC+CGG 0.529139 5_2:+3974957 Msa0750530:CDS
AATATGAGCAATTTAAGTTG+GGG 0.532478 5_2:+3980695 Msa0750530:three_prime_UTR
TTGATTGGGATGAATGGCCG+TGG 0.533085 5_2:+3979523 Msa0750530:CDS
AATGGCAATTAAAAGGAAAG+AGG 0.536424 5_2:+3979268 Msa0750530:CDS
CTCGCAGTCCTCCAAGCTGG+TGG 0.539878 5_2:-3979849 None:intergenic
AAGAACGGCCTTAACAATGC+CGG 0.541891 5_2:+3980014 Msa0750530:CDS
CCCAGCTTGATGAATTGATA+CGG 0.542016 5_2:-3974769 None:intergenic
ATAAAGGTGAGGCATGTCAC+TGG 0.542681 5_2:-3979208 None:intergenic
GCAATGAAGCTGTATCCAAA+TGG 0.548001 5_2:+3979250 Msa0750530:CDS
CTTCTTGTCAATTGACGGCC+CGG 0.548257 5_2:-3980033 None:intergenic
GATGGCCACGGTAGTTGTCA+AGG 0.549940 5_2:-3974539 None:intergenic
AGATGCTATTCTCCACGCCC+TGG 0.550064 5_2:+3975824 Msa0750530:CDS
GGGGAGGAGATGGATGGGGA+GGG 0.553319 5_2:+3974820 Msa0750530:exon
CTATTACGAGCAAGTTAGAT+GGG 0.553342 5_2:+3979703 Msa0750530:CDS
GTAGTGAGCCCAGAGACCTC+TGG 0.554233 5_2:-3980197 None:intergenic
GGTTAATGATGTGGCGGAGA+TGG 0.554841 5_2:-3974557 None:intergenic
GTGTACTTCCACCAGCTTGG+AGG 0.555706 5_2:+3979841 Msa0750530:CDS
GTAGTGTACTTCCACCAGCT+TGG 0.557455 5_2:+3979838 Msa0750530:CDS
TGAAACTGCTTTCAGTAGTG+TGG 0.557725 5_2:-3974698 None:intergenic
GCATACAAGTAGGGGACAGA+GGG 0.558569 5_2:-3980729 None:intergenic
CCAGTCATAATGCAAGCCAT+TGG 0.558583 5_2:+3979988 Msa0750530:CDS
TTTGGATTTGGTTAATGATG+TGG 0.560550 5_2:-3974566 None:intergenic
CTTCAATAGATAAAGAGGAA+AGG 0.560576 5_2:-3980112 None:intergenic
TCCGAAGAAGAAACGGGTCG+TGG 0.563277 5_2:+3974884 Msa0750530:CDS
TAAAAGCTTCTAGTAAGTGA+TGG 0.563281 5_2:-3980152 None:intergenic
TTTAAAAGCATCTACTAATG+TGG 0.564522 5_2:+3980283 Msa0750530:CDS
AACCACAAGAGAATGGGGCC+TGG 0.572020 5_2:+3979387 Msa0750530:CDS
TGGGGAGGGTTTAGGTGCAG+AGG 0.573698 5_2:+3974834 Msa0750530:CDS
AGCATACAAGTAGGGGACAG+AGG 0.575724 5_2:-3980730 None:intergenic
AAAATTTCAATCAGATTTGG+GGG 0.577680 5_2:-3974665 None:intergenic
TTATGGAAGTTCATTTGCTG+AGG 0.579123 5_2:+3976875 Msa0750530:CDS
TCGGTGTAGAGCATACAAGT+AGG 0.585711 5_2:-3980739 None:intergenic
AATGTGGATGTGTTGAATCC+CGG 0.586904 5_2:+3980299 Msa0750530:CDS
TGTGAGAATTCTACACTACA+AGG 0.589547 5_2:-3980538 None:intergenic
AATATCATCTTCCCAACTTG+GGG 0.592578 5_2:+3976845 Msa0750530:CDS
CATGCCTCACCTTTATCCGC+GGG 0.593895 5_2:+3979215 Msa0750530:CDS
GAAAGGGCGGAGACAGCTCT+GGG 0.594889 5_2:+3975762 Msa0750530:CDS
AACTGCAGAAACTGGTGATG+AGG 0.595711 5_2:+3979122 Msa0750530:intron
CGAGTGAAGCCGTTCAGATG+CGG 0.598434 5_2:+3975720 Msa0750530:CDS
CCAATTGAAGTCCTTAAGGA+TGG 0.599661 5_2:+3979750 Msa0750530:CDS
GATGACGATATGTGGGGACG+AGG 0.600202 5_2:-3979894 None:intergenic
CATCTGCCTTTCAAGCTCCA+GGG 0.601453 5_2:-3975841 None:intergenic
GGGAAGATGATATTGGAACA+TGG 0.604182 5_2:-3976836 None:intergenic
TCAAATTCGCCGCATCTGAA+CGG 0.607632 5_2:-3975729 None:intergenic
GGAAGATGATATTGGAACAT+GGG 0.607866 5_2:-3976835 None:intergenic
GACCCAAACAAGGGATCCAA+CGG 0.608724 5_2:-3974863 None:intergenic
TGATGTGGCGGAGATGGCCA+CGG 0.610939 5_2:-3974551 None:intergenic
GCAAGCCATTGGAAGAAGAA+CGG 0.617037 5_2:+3979999 Msa0750530:CDS
ATCCTTATCATTATGATGGG+GGG 0.621541 5_2:+3979607 Msa0750530:CDS
TGATGCATCCATTGAAAGGG+CGG 0.623713 5_2:+3975749 Msa0750530:CDS
TTGGGATGAATGGCCGTGGG+AGG 0.625534 5_2:+3979527 Msa0750530:CDS
AATGATATGATTGGCTACGA+GGG 0.627677 5_2:+3979813 Msa0750530:CDS
GATCCTTATCATTATGATGG+GGG 0.627693 5_2:+3979606 Msa0750530:CDS
TCCAGAGAATCACTAGACTC+AGG 0.629818 5_2:-3976795 None:intergenic
TTGCACGTTCGAGGTTCCCG+CGG 0.629874 5_2:-3979231 None:intergenic
TGATTGGGATGAATGGCCGT+GGG 0.629990 5_2:+3979524 Msa0750530:CDS
TGATCCTTATCATTATGATG+GGG 0.631936 5_2:+3979605 Msa0750530:CDS
TTTCTGTAGTAAGGATAACC+AGG 0.632972 5_2:-3979405 None:intergenic
CGGTGAAGGAAAACGATGAA+CGG 0.634035 5_2:-3974731 None:intergenic
TCTTCTTCGGACCCAAACAA+GGG 0.634856 5_2:-3974872 None:intergenic
ACATGCCTCACCTTTATCCG+CGG 0.634920 5_2:+3979214 Msa0750530:CDS
AAGTAGGGGACAGAGGGACG+AGG 0.635254 5_2:-3980723 None:intergenic
AGGTGAGGTCAGATGAGAAG+CGG 0.637403 5_2:-3974941 None:intergenic
TAATGATATGATTGGCTACG+AGG 0.638869 5_2:+3979812 Msa0750530:CDS
CACCAGCTTGGAGGACTGCG+AGG 0.639410 5_2:+3979850 Msa0750530:CDS
ATGGCCACGGTAGTTGTCAA+GGG 0.641239 5_2:-3974538 None:intergenic
AGGTCAGATGAGAAGCGGCA+AGG 0.642030 5_2:-3974936 None:intergenic
AAAGCAGGCTGATCCTCCCA+CGG 0.647660 5_2:-3979540 None:intergenic
CGGCGTGGAGAGAAAATCGT+AGG 0.648319 5_2:+3980319 Msa0750530:CDS
GGATTTGGTTAATGATGTGG+CGG 0.651298 5_2:-3974563 None:intergenic
GGATATAAGAGATTAAATGG+TGG 0.658972 5_2:+3979960 Msa0750530:CDS
GAAGAAGAAACGGGTCGTGG+TGG 0.659280 5_2:+3974887 Msa0750530:CDS
ATTTAAACCACAAGAGAATG+GGG 0.661307 5_2:+3979382 Msa0750530:CDS
AGCTTGATGAATTGATACGG+TGG 0.666136 5_2:-3974766 None:intergenic
GCGCAGCATTCCGAGCAAAG+AGG 0.666694 5_2:+3976751 Msa0750530:CDS
ATGACGATATGTGGGGACGA+GGG 0.668022 5_2:-3979893 None:intergenic
TCAGTCTTCAGGATGAATTG+GGG 0.668572 5_2:-3980484 None:intergenic
CGTATCAATTCATCAAGCTG+GGG 0.675897 5_2:+3974770 Msa0750530:five_prime_UTR
GGTGTAGAGCATACAAGTAG+GGG 0.682526 5_2:-3980737 None:intergenic
CGGAGTTCCAGATCGAGGTG+AGG 0.682627 5_2:-3974956 None:intergenic
GGTTCCCGCGGATAAAGGTG+AGG 0.684975 5_2:-3979219 None:intergenic
ACAAGAAAGCACTAGCAGTG+AGG 0.686399 5_2:+3979155 Msa0750530:CDS
TCAGGATCGAGTATTTGACC+CGG 0.688455 5_2:-3974910 None:intergenic
ATACACCCTAACTCCTAGAG+AGG 0.691111 5_2:+3979482 Msa0750530:CDS
ACATTTGATGACGATATGTG+GGG 0.693273 5_2:-3979900 None:intergenic
AGAGAATCACTAGACTCAGG+CGG 0.696781 5_2:-3976792 None:intergenic
TTAACCGGAGTTCCAGATCG+AGG 0.712187 5_2:-3974961 None:intergenic
AGACAAGATGACTAAACCAG+AGG 0.726249 5_2:+3980181 Msa0750530:CDS
TGATAAACAGAAGATACATG+AGG 0.727731 5_2:+3980504 Msa0750530:three_prime_UTR
GCAACCCTTGACAACTACCG+TGG 0.734982 5_2:+3974534 Msa0750530:five_prime_UTR
GGATGTGTTGAATCCCGGCG+TGG 0.752904 5_2:+3980304 Msa0750530:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATTTTAAGAAAAAAATT+AGG + chr5_2:3975954-3975973 Msa0750530:intron 10.0%
!! AATTAACCAAAAATTAACAT+GGG - chr5_2:3975177-3975196 None:intergenic 15.0%
!! AAATTAACCAAAAATTAACA+TGG - chr5_2:3975178-3975197 None:intergenic 15.0%
!! AAAATATACAAACATAAACA+AGG - chr5_2:3975386-3975405 None:intergenic 15.0%
!! ATAATATTCGGTAAAATTAA+CGG - chr5_2:3976296-3976315 None:intergenic 15.0%
!! TCAAATTTACAATCTTTATA+AGG - chr5_2:3977225-3977244 None:intergenic 15.0%
!!! TTTTGCAATATTTATTGATA+AGG + chr5_2:3977359-3977378 Msa0750530:intron 15.0%
!!! ATCTATAAACTCTATTTTTA+GGG - chr5_2:3977429-3977448 None:intergenic 15.0%
!!! AATCTATAAACTCTATTTTT+AGG - chr5_2:3977430-3977449 None:intergenic 15.0%
!! ATGTATTACAAGTTAAAATA+AGG + chr5_2:3978118-3978137 Msa0750530:intron 15.0%
!! ACAAAATTTCAATCAGATTT+GGG - chr5_2:3974670-3974689 None:intergenic 20.0%
!! AAAACTGAATTTGAAGAAAA+GGG - chr5_2:3975021-3975040 None:intergenic 20.0%
!! AAAAACTGAATTTGAAGAAA+AGG - chr5_2:3975022-3975041 None:intergenic 20.0%
!! ATATTAAACAACACAAACAA+GGG - chr5_2:3975503-3975522 None:intergenic 20.0%
!! AATATTAAACAACACAAACA+AGG - chr5_2:3975504-3975523 None:intergenic 20.0%
!! CATATAAACAACACAAATAA+GGG - chr5_2:3975538-3975557 None:intergenic 20.0%
!! ACATATAAACAACACAAATA+AGG - chr5_2:3975539-3975558 None:intergenic 20.0%
!!! GTATATTTTTTAACAGAGAT+TGG + chr5_2:3975676-3975695 Msa0750530:intron 20.0%
!! AGTATTATACAATCCAAAAT+TGG - chr5_2:3975907-3975926 None:intergenic 20.0%
!! ATTGTATAATACTATTGAGA+AGG + chr5_2:3975914-3975933 Msa0750530:intron 20.0%
!! TTGTATAATACTATTGAGAA+GGG + chr5_2:3975915-3975934 Msa0750530:intron 20.0%
!!! ATGACTAAAAAAAACTTGTT+TGG + chr5_2:3976080-3976099 Msa0750530:intron 20.0%
!!! TTTTTCAATTAAGATTGCAA+GGG - chr5_2:3976213-3976232 None:intergenic 20.0%
!!! TTTTTTCAATTAAGATTGCA+AGG - chr5_2:3976214-3976233 None:intergenic 20.0%
!! CTGATTGAACTTATAATATT+CGG - chr5_2:3976308-3976327 None:intergenic 20.0%
!! GTGACTAATATTAAATAAAG+AGG + chr5_2:3976624-3976643 Msa0750530:intron 20.0%
!! ATTGTAAATTAGTGAAGATT+AGG + chr5_2:3976679-3976698 Msa0750530:intron 20.0%
!! AAGAAATAAAATGAAGTGTA+AGG - chr5_2:3977084-3977103 None:intergenic 20.0%
!! AGACTAGAAATAATCATAAA+CGG - chr5_2:3977672-3977691 None:intergenic 20.0%
!!! AACTTGTAATACATTTTGTT+TGG - chr5_2:3978112-3978131 None:intergenic 20.0%
!!! TATTATACTGTGTTTTCTAA+GGG - chr5_2:3978256-3978275 None:intergenic 20.0%
!!! ATATTATACTGTGTTTTCTA+AGG - chr5_2:3978257-3978276 None:intergenic 20.0%
!!! TTCAAATTGTCTAGAATATT+AGG - chr5_2:3978296-3978315 None:intergenic 20.0%
!!! TTCAAATTGTCTAGAATATT+AGG - chr5_2:3978296-3978315 None:intergenic 20.0%
!! AATTCCTAACGATAAATTTA+TGG - chr5_2:3978654-3978673 None:intergenic 20.0%
!!! AAGTTAAATTGTTTTCGTAT+AGG - chr5_2:3978954-3978973 None:intergenic 20.0%
!!! AAAGAATATTCGGATTTTAA+AGG + chr5_2:3979564-3979583 Msa0750530:CDS 20.0%
!!! AAGAATATTCGGATTTTAAA+GGG + chr5_2:3979565-3979584 Msa0750530:CDS 20.0%
!! AATGGATATAAGAGATTAAA+TGG + chr5_2:3979957-3979976 Msa0750530:CDS 20.0%
!!! TTTTTTTGCACTCTTTTTAA+AGG - chr5_2:3980060-3980079 None:intergenic 20.0%
!! ATTATCTTCAATAGATAAAG+AGG - chr5_2:3980120-3980139 None:intergenic 20.0%
!! TTATCTATTGAAGATAATCT+TGG + chr5_2:3980122-3980141 Msa0750530:CDS 20.0%
!!! AAATACGATTTCTATTTTGT+TGG - chr5_2:3980423-3980442 None:intergenic 20.0%
!! AATCGTATTTAATTGATTGT+TGG + chr5_2:3980433-3980452 Msa0750530:three_prime_UTR 20.0%
!!! TATGCAAAAAGCATTATTAT+TGG + chr5_2:3980588-3980607 Msa0750530:three_prime_UTR 20.0%
!! AAAATATGAGCAATTTAAGT+TGG + chr5_2:3980693-3980712 Msa0750530:three_prime_UTR 20.0%
!!! AAATATGAGCAATTTAAGTT+GGG + chr5_2:3980694-3980713 Msa0750530:three_prime_UTR 20.0%
! AAAATTTCAATCAGATTTGG+GGG - chr5_2:3974668-3974687 None:intergenic 25.0%
! CAAAATTTCAATCAGATTTG+GGG - chr5_2:3974669-3974688 None:intergenic 25.0%
! CACAAAATTTCAATCAGATT+TGG - chr5_2:3974671-3974690 None:intergenic 25.0%
!! TATGAACCCATGTTAATTTT+TGG + chr5_2:3975168-3975187 Msa0750530:intron 25.0%
! TTGATAGATTTGAGCATATT+AGG + chr5_2:3975256-3975275 Msa0750530:intron 25.0%
! TGATAGATTTGAGCATATTA+GGG + chr5_2:3975257-3975276 Msa0750530:intron 25.0%
! AAAGTCAACAATCATTTCAT+TGG - chr5_2:3975308-3975327 None:intergenic 25.0%
! ATAATAGACAACACAAACAA+GGG - chr5_2:3975438-3975457 None:intergenic 25.0%
! CAAGAGCAAATTAACAAAAT+AGG - chr5_2:3975647-3975666 None:intergenic 25.0%
! TAACAGAGATTGGTATAATT+TGG + chr5_2:3975686-3975705 Msa0750530:intron 25.0%
!! TATTTCTCTCTTTTCTTCAA+TGG - chr5_2:3975792-3975811 None:intergenic 25.0%
! CTAAGGAAACAAGATAAATT+AGG + chr5_2:3975864-3975883 Msa0750530:CDS 25.0%
!! ATTGGAAAATAGACTTTTGT+AGG + chr5_2:3976010-3976029 Msa0750530:intron 25.0%
! ACTTATAAGCAAGATTATAG+CGG - chr5_2:3976347-3976366 None:intergenic 25.0%
!! CTTTGTTTGGTAAAAAATAG+TGG - chr5_2:3976463-3976482 None:intergenic 25.0%
! GAACATAACTTGGTATATTA+GGG - chr5_2:3976543-3976562 None:intergenic 25.0%
! AGAACATAACTTGGTATATT+AGG - chr5_2:3976544-3976563 None:intergenic 25.0%
! TGAAACTGCTTCTATTAAAT+CGG + chr5_2:3976941-3976960 Msa0750530:CDS 25.0%
! ATCAGAATTATTACCTAGAT+TGG + chr5_2:3977395-3977414 Msa0750530:intron 25.0%
! TATACATACATTACGTAAAC+AGG - chr5_2:3977474-3977493 None:intergenic 25.0%
!!! TTGGTTTTGGTTTTTATTAC+TGG - chr5_2:3977897-3977916 None:intergenic 25.0%
!! TTGTCTGCAATTAAAGTTTT+AGG + chr5_2:3978145-3978164 Msa0750530:intron 25.0%
! GTACTTATATTCTCTCAAAA+AGG - chr5_2:3978213-3978232 None:intergenic 25.0%
!! AAATAATGTCAAGCTTTTCA+AGG - chr5_2:3978364-3978383 None:intergenic 25.0%
! AAGCTTGACATTATTTACAA+TGG + chr5_2:3978368-3978387 Msa0750530:intron 25.0%
! GTGAGTTTGTGTTATATATT+AGG - chr5_2:3978445-3978464 None:intergenic 25.0%
!! AAATAATGTCAAGCTTTTCA+AGG - chr5_2:3978364-3978383 None:intergenic 25.0%
! AAGCTTGACATTATTTACAA+TGG + chr5_2:3978368-3978387 Msa0750530:intron 25.0%
! CACATATAGATTGTAAAGTT+GGG - chr5_2:3978582-3978601 None:intergenic 25.0%
! CAACTTTACAATCTATATGT+GGG + chr5_2:3978581-3978600 Msa0750530:intron 25.0%
! ATAGATTCACATTACAAGTT+AGG - chr5_2:3978627-3978646 None:intergenic 25.0%
! TAAGATCTAAATGATGGTTA+AGG - chr5_2:3978735-3978754 None:intergenic 25.0%
!!! ACATTCTAAGATCTAAATGA+TGG - chr5_2:3978741-3978760 None:intergenic 25.0%
!! TCTTAGAATGTCTTACATTT+TGG + chr5_2:3978750-3978769 Msa0750530:intron 25.0%
!! CTTAGAATGTCTTACATTTT+GGG + chr5_2:3978751-3978770 Msa0750530:intron 25.0%
!! ATTATTTCTTTCCTGATCTA+AGG - chr5_2:3979940-3979959 None:intergenic 25.0%
! TTAGATCAGGAAAGAAATAA+TGG + chr5_2:3979939-3979958 Msa0750530:CDS 25.0%
! TTCAATAGATAAAGAGGAAA+GGG - chr5_2:3980114-3980133 None:intergenic 25.0%
! GATTACTTGAGAAGATTAAT+AGG + chr5_2:3980255-3980274 Msa0750530:CDS 25.0%
!! ACATTAGTAGATGCTTTTAA+AGG - chr5_2:3980284-3980303 None:intergenic 25.0%
!!! TTTAAAAGCATCTACTAATG+TGG + chr5_2:3980283-3980302 Msa0750530:CDS 25.0%
! TAATAATTATCTTGCAGTGA+TGG + chr5_2:3980370-3980389 Msa0750530:three_prime_UTR 25.0%
!! AATTGATTGTTGGTATTTTG+AGG + chr5_2:3980443-3980462 Msa0750530:three_prime_UTR 25.0%
!!! AATATGAGCAATTTAAGTTG+GGG + chr5_2:3980695-3980714 Msa0750530:three_prime_UTR 25.0%
! TTTGGATTTGGTTAATGATG+TGG - chr5_2:3974569-3974588 None:intergenic 30.0%
ATCATTAACCAAATCCAAAC+CGG + chr5_2:3974570-3974589 Msa0750530:five_prime_UTR 30.0%
TGAAGTTTGAATCTTCTAGA+AGG - chr5_2:3974597-3974616 None:intergenic 30.0%
TACGATATAAAGCCGAATTT+CGG - chr5_2:3975215-3975234 None:intergenic 30.0%
GATAGATTTGAGCATATTAG+GGG + chr5_2:3975258-3975277 Msa0750530:intron 30.0%
!!! TGATTGTTGACTTTTATGAG+TGG + chr5_2:3975314-3975333 Msa0750530:intron 30.0%
AGCATAAAGAACACAAACAA+GGG - chr5_2:3975356-3975375 None:intergenic 30.0%
CATAATAGACAACACAAACA+AGG - chr5_2:3975439-3975458 None:intergenic 30.0%
!! TAATTTGCTCTTGTTTGTGT+TGG + chr5_2:3975654-3975673 Msa0750530:intron 30.0%
AATTTGATGCATCCATTGAA+AGG + chr5_2:3975745-3975764 Msa0750530:CDS 30.0%
ATTTGATGCATCCATTGAAA+GGG + chr5_2:3975746-3975765 Msa0750530:CDS 30.0%
! GCTTCTGATTAAACCAATTT+TGG + chr5_2:3975891-3975910 Msa0750530:intron 30.0%
AAACAAAATCACATGCAACA+TGG + chr5_2:3975981-3976000 Msa0750530:intron 30.0%
CATAAGTCAAAAGGCAAATT+AGG - chr5_2:3976400-3976419 None:intergenic 30.0%
! GTTTGGTAAAAAATAGTGGA+TGG - chr5_2:3976459-3976478 None:intergenic 30.0%
!!! TGTTTTGTTTTTCAGGATCT+GGG + chr5_2:3976721-3976740 Msa0750530:intron 30.0%
! GAAGACATGACTATATTTTC+AGG + chr5_2:3976999-3977018 Msa0750530:CDS 30.0%
CTTTATAAGGAAAAGAAGTG+AGG - chr5_2:3977212-3977231 None:intergenic 30.0%
TCATCAGAAGAGAGTAAATA+GGG - chr5_2:3977326-3977345 None:intergenic 30.0%
TTCATCAGAAGAGAGTAAAT+AGG - chr5_2:3977327-3977346 None:intergenic 30.0%
!!! ACTCTATTTTTAGGGTACAT+TGG - chr5_2:3977421-3977440 None:intergenic 30.0%
! ACGTAAACAGGATTTTACAA+AGG - chr5_2:3977462-3977481 None:intergenic 30.0%
CAAAAATGAAAGATGCACAA+TGG - chr5_2:3977622-3977641 None:intergenic 30.0%
! AACCCATAAATACTCCTTTT+AGG + chr5_2:3977855-3977874 Msa0750530:intron 30.0%
!! AGCCTAAAAGGAGTATTTAT+GGG - chr5_2:3977860-3977879 None:intergenic 30.0%
!! TAGCCTAAAAGGAGTATTTA+TGG - chr5_2:3977861-3977880 None:intergenic 30.0%
!! TTTTATTACTGGTGGTTTGT+AGG - chr5_2:3977886-3977905 None:intergenic 30.0%
!!! GTTTTGGTTTTTATTACTGG+TGG - chr5_2:3977894-3977913 None:intergenic 30.0%
!! TTAGTAGGGTACTTTAAGAT+TGG - chr5_2:3977916-3977935 None:intergenic 30.0%
!!! CTTGAAAGGAGTTTTTAGTA+GGG - chr5_2:3977930-3977949 None:intergenic 30.0%
!!! ACTTGAAAGGAGTTTTTAGT+AGG - chr5_2:3977931-3977950 None:intergenic 30.0%
TAATACCTTGTGAACTTGAA+AGG - chr5_2:3977944-3977963 None:intergenic 30.0%
AATCTTTCAAATCTTACACG+CGG + chr5_2:3977998-3978017 Msa0750530:intron 30.0%
TGTTCTAGTCAATGTATTAG+AGG + chr5_2:3978079-3978098 Msa0750530:intron 30.0%
GAATATAAGTACATAGCTAG+AGG + chr5_2:3978221-3978240 Msa0750530:intron 30.0%
TACACATAGATTGTAGAGTT+GGG - chr5_2:3978411-3978430 None:intergenic 30.0%
TTACACATAGATTGTAGAGT+TGG - chr5_2:3978412-3978431 None:intergenic 30.0%
CCACATATAGATTGTAAAGT+TGG - chr5_2:3978583-3978602 None:intergenic 30.0%
CCAACTTTACAATCTATATG+TGG + chr5_2:3978580-3978599 Msa0750530:intron 30.0%
GTGACCATAAATTTATCGTT+AGG + chr5_2:3978647-3978666 Msa0750530:intron 30.0%
AGGAATAGATTATTGACATG+TGG - chr5_2:3978701-3978720 None:intergenic 30.0%
! ATTTTCATATGCTCTCCAAA+TGG + chr5_2:3978908-3978927 Msa0750530:intron 30.0%
AATGATGTGATACAGAACTA+AGG - chr5_2:3979074-3979093 None:intergenic 30.0%
!! AACTTTTTAACTGCAGAAAC+TGG + chr5_2:3979114-3979133 Msa0750530:intron 30.0%
GTATCCAAATGGCAATTAAA+AGG + chr5_2:3979261-3979280 Msa0750530:CDS 30.0%
!! CTTTCCTTTTAATTGCCATT+TGG - chr5_2:3979268-3979287 None:intergenic 30.0%
AATGGCAATTAAAAGGAAAG+AGG + chr5_2:3979268-3979287 Msa0750530:CDS 30.0%
ATAACCGTAACCTTGTAAAA+AGG + chr5_2:3979292-3979311 Msa0750530:CDS 30.0%
!! AGGAAAGACGTTGTTTTATA+TGG + chr5_2:3979333-3979352 Msa0750530:CDS 30.0%
TTATATGGAGCAGATATTGA+AGG + chr5_2:3979348-3979367 Msa0750530:CDS 30.0%
CATTTAAACCACAAGAGAAT+GGG + chr5_2:3979381-3979400 Msa0750530:CDS 30.0%
ATTTAAACCACAAGAGAATG+GGG + chr5_2:3979382-3979401 Msa0750530:CDS 30.0%
CTATAGTCATTTCTGTAGTA+AGG - chr5_2:3979417-3979436 None:intergenic 30.0%
AAAAAGTCAAGGTCTTGATT+GGG + chr5_2:3979509-3979528 Msa0750530:CDS 30.0%
AGTGATCCTTATCATTATGA+TGG + chr5_2:3979603-3979622 Msa0750530:CDS 30.0%
GTGATCCTTATCATTATGAT+GGG + chr5_2:3979604-3979623 Msa0750530:CDS 30.0%
TGATCCTTATCATTATGATG+GGG + chr5_2:3979605-3979624 Msa0750530:CDS 30.0%
TGCTCGTAATAGATACAATA+GGG - chr5_2:3979695-3979714 None:intergenic 30.0%
TTGCTCGTAATAGATACAAT+AGG - chr5_2:3979696-3979715 None:intergenic 30.0%
TTAGATGGGAGTTCTATAAT+TGG + chr5_2:3979717-3979736 Msa0750530:CDS 30.0%
GACTTCAGTAATGATATGAT+TGG + chr5_2:3979804-3979823 Msa0750530:CDS 30.0%
!! AACATTTGATGACGATATGT+GGG - chr5_2:3979904-3979923 None:intergenic 30.0%
GGATATAAGAGATTAAATGG+TGG + chr5_2:3979960-3979979 Msa0750530:CDS 30.0%
CTTCAATAGATAAAGAGGAA+AGG - chr5_2:3980115-3980134 None:intergenic 30.0%
TAAAAGCTTCTAGTAAGTGA+TGG - chr5_2:3980155-3980174 None:intergenic 30.0%
CTACTAAATACCAGTTTAAC+TGG - chr5_2:3980236-3980255 None:intergenic 30.0%
!! TTAGTAGATGCTTTTAAAGG+TGG - chr5_2:3980281-3980300 None:intergenic 30.0%
TGATAAACAGAAGATACATG+AGG + chr5_2:3980504-3980523 Msa0750530:three_prime_UTR 30.0%
! AGCTCTATTTGATGATTGAT+AGG + chr5_2:3980622-3980641 Msa0750530:three_prime_UTR 30.0%
! ATTGCAGAAACTCAATTTTC+TGG + chr5_2:3980790-3980809 Msa0750530:three_prime_UTR 30.0%
! TTTGAATCTTCTAGAAGGAC+CGG - chr5_2:3974592-3974611 None:intergenic 35.0%
! TGGGGGAATTGAATTTTCTA+GGG - chr5_2:3974651-3974670 None:intergenic 35.0%
! TTGGGGGAATTGAATTTTCT+AGG - chr5_2:3974652-3974671 None:intergenic 35.0%
GGAAGCGAAAAAAAGTTAAG+CGG + chr5_2:3974791-3974810 Msa0750530:five_prime_UTR 35.0%
CAGCATAAAGAACACAAACA+AGG - chr5_2:3975357-3975376 None:intergenic 35.0%
! TTGCCCTTGTTTATGTTGAT+TGG + chr5_2:3975412-3975431 Msa0750530:intron 35.0%
AACTGAACCAACACAAACAA+GGG - chr5_2:3975569-3975588 None:intergenic 35.0%
AAACTGAACCAACACAAACA+AGG - chr5_2:3975570-3975589 None:intergenic 35.0%
CATGCAACATGGCAATATAT+TGG + chr5_2:3975992-3976011 Msa0750530:intron 35.0%
! AATAGACTTTTGTAGGACTG+TGG + chr5_2:3976017-3976036 Msa0750530:intron 35.0%
! ATAGACTTTTGTAGGACTGT+GGG + chr5_2:3976018-3976037 Msa0750530:intron 35.0%
AGGAGTCTGGTAAAATATAG+CGG - chr5_2:3976380-3976399 None:intergenic 35.0%
GGATAAGCTCATAAGTCAAA+AGG - chr5_2:3976409-3976428 None:intergenic 35.0%
! AGCTAGCTTATTGCTAAGAA+CGG - chr5_2:3976430-3976449 None:intergenic 35.0%
AGAAGTCCAAAGGCAAATTA+GGG - chr5_2:3976486-3976505 None:intergenic 35.0%
!! TAGGGCTTTGAATCATAAGA+AGG - chr5_2:3976525-3976544 None:intergenic 35.0%
CCTAAGTGAAGAACATAACT+TGG - chr5_2:3976553-3976572 None:intergenic 35.0%
CCAAGTTATGTTCTTCACTT+AGG + chr5_2:3976550-3976569 Msa0750530:intron 35.0%
AGTACAGTCGAAGTTATCTT+TGG + chr5_2:3976574-3976593 Msa0750530:intron 35.0%
!!! GTGTTTTGTTTTTCAGGATC+TGG + chr5_2:3976720-3976739 Msa0750530:intron 35.0%
GGAAGATGATATTGGAACAT+GGG - chr5_2:3976838-3976857 None:intergenic 35.0%
CAATATCATCTTCCCAACTT+GGG + chr5_2:3976844-3976863 Msa0750530:CDS 35.0%
AATATCATCTTCCCAACTTG+GGG + chr5_2:3976845-3976864 Msa0750530:CDS 35.0%
! TTATGGAAGTTCATTTGCTG+AGG + chr5_2:3976875-3976894 Msa0750530:CDS 35.0%
TACTTTCCTTGAGCTTACAT+CGG + chr5_2:3977036-3977055 Msa0750530:intron 35.0%
AATAAACCGATGTAAGCTCA+AGG - chr5_2:3977045-3977064 None:intergenic 35.0%
ATTCGTACAATAGTGCAACA+AGG - chr5_2:3977129-3977148 None:intergenic 35.0%
!! GTATCAGATGTGATTTGCTA+AGG + chr5_2:3977541-3977560 Msa0750530:intron 35.0%
TGTTCTCAGTCTAATGTCTT+GGG - chr5_2:3977567-3977586 None:intergenic 35.0%
TTGTTCTCAGTCTAATGTCT+TGG - chr5_2:3977568-3977587 None:intergenic 35.0%
AGACATTAGACTGAGAACAA+AGG + chr5_2:3977568-3977587 Msa0750530:intron 35.0%
GTTTGTAGGTTTAGCCTAAA+AGG - chr5_2:3977872-3977891 None:intergenic 35.0%
!!! GGGTACTTTAAGATTGGTTT+TGG - chr5_2:3977910-3977929 None:intergenic 35.0%
!! AAACTCCTTTCAAGTTCACA+AGG + chr5_2:3977936-3977955 Msa0750530:intron 35.0%
! TCAAGTTCACAAGGTATTAC+AGG + chr5_2:3977945-3977964 Msa0750530:intron 35.0%
!! TTTTAGGTAACAAAGTTGCG+TGG + chr5_2:3978161-3978180 Msa0750530:intron 35.0%
TGTGGGTCTGAATTCATATA+TGG + chr5_2:3978598-3978617 Msa0750530:intron 35.0%
AAATGATGGTTAAGGTGACA+GGG - chr5_2:3978727-3978746 None:intergenic 35.0%
TAAATGATGGTTAAGGTGAC+AGG - chr5_2:3978728-3978747 None:intergenic 35.0%
!! ACTGCTTAGATTGACTTGTT+TGG + chr5_2:3978836-3978855 Msa0750530:intron 35.0%
!! CTGCTTAGATTGACTTGTTT+GGG + chr5_2:3978837-3978856 Msa0750530:intron 35.0%
!! AGCTGTTTTCATAAGCCATT+TGG - chr5_2:3978926-3978945 None:intergenic 35.0%
ATTAAGCTCTTCATCCAAAC+AGG + chr5_2:3979047-3979066 Msa0750530:intron 35.0%
! CAGACCTTTTTACAAGGTTA+CGG - chr5_2:3979299-3979318 None:intergenic 35.0%
CCATTCTCTTGTGGTTTAAA+TGG - chr5_2:3979383-3979402 None:intergenic 35.0%
CCATTTAAACCACAAGAGAA+TGG + chr5_2:3979380-3979399 Msa0750530:CDS 35.0%
TTTCTGTAGTAAGGATAACC+AGG - chr5_2:3979408-3979427 None:intergenic 35.0%
CAAAAAGTCAAGGTCTTGAT+TGG + chr5_2:3979508-3979527 Msa0750530:CDS 35.0%
!! GCCTGCTTTGAAAGAATATT+CGG + chr5_2:3979554-3979573 Msa0750530:CDS 35.0%
TCCGAATATTCTTTCAAAGC+AGG - chr5_2:3979558-3979577 None:intergenic 35.0%
GATCCTTATCATTATGATGG+GGG + chr5_2:3979606-3979625 Msa0750530:CDS 35.0%
! ATCCTTATCATTATGATGGG+GGG + chr5_2:3979607-3979626 Msa0750530:CDS 35.0%
TCTATTACGAGCAAGTTAGA+TGG + chr5_2:3979702-3979721 Msa0750530:CDS 35.0%
CTATTACGAGCAAGTTAGAT+GGG + chr5_2:3979703-3979722 Msa0750530:CDS 35.0%
TAAGGACTTCAATTGGGATT+GGG - chr5_2:3979746-3979765 None:intergenic 35.0%
TTAAGGACTTCAATTGGGAT+TGG - chr5_2:3979747-3979766 None:intergenic 35.0%
AATCCCAATTGAAGTCCTTA+AGG + chr5_2:3979746-3979765 Msa0750530:CDS 35.0%
CATCCTTAAGGACTTCAATT+GGG - chr5_2:3979752-3979771 None:intergenic 35.0%
! TAATGATATGATTGGCTACG+AGG + chr5_2:3979812-3979831 Msa0750530:CDS 35.0%
! AATGATATGATTGGCTACGA+GGG + chr5_2:3979813-3979832 Msa0750530:CDS 35.0%
!! ACATTTGATGACGATATGTG+GGG - chr5_2:3979903-3979922 None:intergenic 35.0%
!! CAACATTTGATGACGATATG+TGG - chr5_2:3979905-3979924 None:intergenic 35.0%
AAGGACTTCTTGTCAATTGA+CGG - chr5_2:3980041-3980060 None:intergenic 35.0%
ATCAGTCTTCAGGATGAATT+GGG - chr5_2:3980488-3980507 None:intergenic 35.0%
TATCAGTCTTCAGGATGAAT+TGG - chr5_2:3980489-3980508 None:intergenic 35.0%
TCTTCTGTTTATCAGTCTTC+AGG - chr5_2:3980498-3980517 None:intergenic 35.0%
TGTGAGAATTCTACACTACA+AGG - chr5_2:3980541-3980560 None:intergenic 35.0%
!!! TCTCACATGTTGATTTTCTG+AGG + chr5_2:3980554-3980573 Msa0750530:three_prime_UTR 35.0%
GTCAAACAAGTTCTCAGTTT+CGG - chr5_2:3980761-3980780 None:intergenic 35.0%
! GGATTTGGTTAATGATGTGG+CGG - chr5_2:3974566-3974585 None:intergenic 40.0%
! GCTTTCAGTAGTGTGGATTA+GGG - chr5_2:3974694-3974713 None:intergenic 40.0%
TGCTTTCAGTAGTGTGGATT+AGG - chr5_2:3974695-3974714 None:intergenic 40.0%
TGAAACTGCTTTCAGTAGTG+TGG - chr5_2:3974701-3974720 None:intergenic 40.0%
AGCTTGATGAATTGATACGG+TGG - chr5_2:3974769-3974788 None:intergenic 40.0%
ACCGTATCAATTCATCAAGC+TGG + chr5_2:3974768-3974787 Msa0750530:five_prime_UTR 40.0%
CCCAGCTTGATGAATTGATA+CGG - chr5_2:3974772-3974791 None:intergenic 40.0%
CCGTATCAATTCATCAAGCT+GGG + chr5_2:3974769-3974788 Msa0750530:five_prime_UTR 40.0%
CGTATCAATTCATCAAGCTG+GGG + chr5_2:3974770-3974789 Msa0750530:five_prime_UTR 40.0%
AGCGAAAAAAAGTTAAGCGG+AGG + chr5_2:3974794-3974813 Msa0750530:five_prime_UTR 40.0%
GCGAAAAAAAGTTAAGCGGA+GGG + chr5_2:3974795-3974814 Msa0750530:five_prime_UTR 40.0%
CGAAAAAAAGTTAAGCGGAG+GGG + chr5_2:3974796-3974815 Msa0750530:five_prime_UTR 40.0%
! TGTGCTTAAGCTTTTCTGCA+GGG + chr5_2:3975104-3975123 Msa0750530:intron 40.0%
TATAAAGCCGAATTTCGGTG+TGG - chr5_2:3975210-3975229 None:intergenic 40.0%
AGATTTGAGCATATTAGGGG+TGG + chr5_2:3975261-3975280 Msa0750530:intron 40.0%
GGGCCAATCAACATAAACAA+GGG - chr5_2:3975418-3975437 None:intergenic 40.0%
AGGGCCAATCAACATAAACA+AGG - chr5_2:3975419-3975438 None:intergenic 40.0%
! TGATTTGCACTTGTTTGCGT+TGG + chr5_2:3975460-3975479 Msa0750530:intron 40.0%
! CTTGTTTGCGTTGGTCTATT+TGG + chr5_2:3975469-3975488 Msa0750530:intron 40.0%
! TGATTTGCCCTTGTTTGTGT+TGG + chr5_2:3975346-3975365 Msa0750530:intron 40.0%
!! TGGTAAAATATAGCGGATGG+CGG - chr5_2:3976373-3976392 None:intergenic 40.0%
! GTCTGGTAAAATATAGCGGA+TGG - chr5_2:3976376-3976395 None:intergenic 40.0%
CAAAAGGCAAATTAGGAGTC+TGG - chr5_2:3976393-3976412 None:intergenic 40.0%
!! AGGCAAATTAGGGCTTTGTT+TGG - chr5_2:3976476-3976495 None:intergenic 40.0%
! ACAAAGCCCTAATTTGCCTT+TGG + chr5_2:3976477-3976496 Msa0750530:intron 40.0%
CAGAAGTCCAAAGGCAAATT+AGG - chr5_2:3976487-3976506 None:intergenic 40.0%
TTTGCCTTTGGACTTCTGAA+AGG + chr5_2:3976489-3976508 Msa0750530:intron 40.0%
! TTGCCTTTGGACTTCTGAAA+GGG + chr5_2:3976490-3976509 Msa0750530:intron 40.0%
GGCTGAAGAAAAAGTAAACG+AGG + chr5_2:3976595-3976614 Msa0750530:intron 40.0%
CCTGAAAAACAAAACACAGC+AGG - chr5_2:3976717-3976736 None:intergenic 40.0%
!!! CCTGCTGTGTTTTGTTTTTC+AGG + chr5_2:3976714-3976733 Msa0750530:intron 40.0%
!! TTTTCAGGATCTGGGCAAAT+AGG + chr5_2:3976729-3976748 Msa0750530:intron 40.0%
GGGAAGATGATATTGGAACA+TGG - chr5_2:3976839-3976858 None:intergenic 40.0%
! CCAAGTTGGGAAGATGATAT+TGG - chr5_2:3976846-3976865 None:intergenic 40.0%
CCAATATCATCTTCCCAACT+TGG + chr5_2:3976843-3976862 Msa0750530:CDS 40.0%
ATAAGCATACTCCCCAAGTT+GGG - chr5_2:3976859-3976878 None:intergenic 40.0%
CGAGAATGTTGAAGGATGAA+TGG - chr5_2:3977182-3977201 None:intergenic 40.0%
GAATAGTGCGAGAATGTTGA+AGG - chr5_2:3977190-3977209 None:intergenic 40.0%
! AGTAAATAGGGAGGTATGGT+GGG - chr5_2:3977314-3977333 None:intergenic 40.0%
AGAGAGTAAATAGGGAGGTA+TGG - chr5_2:3977318-3977337 None:intergenic 40.0%
TCAGAAGAGAGTAAATAGGG+AGG - chr5_2:3977323-3977342 None:intergenic 40.0%
GCCTTTACACAAGTTGTGAA+GGG + chr5_2:3977773-3977792 Msa0750530:intron 40.0%
ACCCTTCACAACTTGTGTAA+AGG - chr5_2:3977777-3977796 None:intergenic 40.0%
AGCAAGAAAACCAACAGAGA+TGG + chr5_2:3977798-3977817 Msa0750530:intron 40.0%
! TTGCTTTGTTCGAACGCTTT+CGG - chr5_2:3977836-3977855 None:intergenic 40.0%
! AAGGTATTACAGGTTGCAAC+AGG + chr5_2:3977955-3977974 Msa0750530:intron 40.0%
TTGACTAGAACATGCTGTTG+AGG - chr5_2:3978071-3978090 None:intergenic 40.0%
GCTGAAAACAGTTACGTACA+TGG - chr5_2:3978886-3978905 None:intergenic 40.0%
TACAGAACTAAGGTCCTGTT+TGG - chr5_2:3979064-3979083 None:intergenic 40.0%
GCAATGAAGCTGTATCCAAA+TGG + chr5_2:3979250-3979269 Msa0750530:CDS 40.0%
! CAGCAACAGACCTTTTTACA+AGG - chr5_2:3979305-3979324 None:intergenic 40.0%
AACATTTGATCGCTGTCATC+AGG - chr5_2:3979447-3979466 None:intergenic 40.0%
GATGACAGCGATCAAATGTT+TGG + chr5_2:3979447-3979466 Msa0750530:CDS 40.0%
! TGACTTTTTGCAACCTCTCT+AGG - chr5_2:3979498-3979517 None:intergenic 40.0%
AGAGAGGTTGCAAAAAGTCA+AGG + chr5_2:3979498-3979517 Msa0750530:CDS 40.0%
AAGGTCTTGATTGGGATGAA+TGG + chr5_2:3979517-3979536 Msa0750530:CDS 40.0%
TTCCCCCCATCATAATGATA+AGG - chr5_2:3979612-3979631 None:intergenic 40.0%
! TTATCATTATGATGGGGGGA+AGG + chr5_2:3979611-3979630 Msa0750530:CDS 40.0%
! TATCATTATGATGGGGGGAA+GGG + chr5_2:3979612-3979631 Msa0750530:CDS 40.0%
AGATGTAGACTTGAAGGTTC+AGG + chr5_2:3979647-3979666 Msa0750530:CDS 40.0%
! ACAATAGGGACTGACTCTTT+CGG - chr5_2:3979681-3979700 None:intergenic 40.0%
CCATCCTTAAGGACTTCAAT+TGG - chr5_2:3979753-3979772 None:intergenic 40.0%
CCAATTGAAGTCCTTAAGGA+TGG + chr5_2:3979750-3979769 Msa0750530:CDS 40.0%
TGAAGACTTCTCCTTAGATC+AGG + chr5_2:3979926-3979945 Msa0750530:CDS 40.0%
AGACAAGATGACTAAACCAG+AGG + chr5_2:3980181-3980200 Msa0750530:CDS 40.0%
AGCTTGCATACCAGTTAAAC+TGG + chr5_2:3980223-3980242 Msa0750530:CDS 40.0%
AATGTGGATGTGTTGAATCC+CGG + chr5_2:3980299-3980318 Msa0750530:CDS 40.0%
TCAGTCTTCAGGATGAATTG+GGG - chr5_2:3980487-3980506 None:intergenic 40.0%
!! TAGAAGGACCGGTTTGGATT+TGG - chr5_2:3974581-3974600 None:intergenic 45.0%
! ATCTTCTAGAAGGACCGGTT+TGG - chr5_2:3974587-3974606 None:intergenic 45.0%
CGGTGAAGGAAAACGATGAA+CGG - chr5_2:3974734-3974753 None:intergenic 45.0%
! CGTTCATCGTTTTCCTTCAC+CGG + chr5_2:3974732-3974751 Msa0750530:five_prime_UTR 45.0%
AAAAAAGTTAAGCGGAGGGG+AGG + chr5_2:3974799-3974818 Msa0750530:five_prime_UTR 45.0%
AAAAAGTTAAGCGGAGGGGA+GGG + chr5_2:3974800-3974819 Msa0750530:five_prime_UTR 45.0%
TCTTCTTCGGACCCAAACAA+GGG - chr5_2:3974875-3974894 None:intergenic 45.0%
TTCTTCTTCGGACCCAAACA+AGG - chr5_2:3974876-3974895 None:intergenic 45.0%
GTTTGGGTCCGAAGAAGAAA+CGG + chr5_2:3974877-3974896 Msa0750530:CDS 45.0%
TTTGGGTCCGAAGAAGAAAC+GGG + chr5_2:3974878-3974897 Msa0750530:CDS 45.0%
TCAGGATCGAGTATTTGACC+CGG - chr5_2:3974913-3974932 None:intergenic 45.0%
TCTCTTCCCAGAAGCTTAAC+CGG - chr5_2:3974979-3974998 None:intergenic 45.0%
!! AGAAAAGGGCATTTACACGC+TGG - chr5_2:3975007-3975026 None:intergenic 45.0%
! CTGTGCTTAAGCTTTTCTGC+AGG + chr5_2:3975103-3975122 Msa0750530:intron 45.0%
! TGATTTCCCCTTGTTTGCGT+CGG + chr5_2:3975621-3975640 Msa0750530:intron 45.0%
AAATAGGCCGACGCAAACAA+GGG - chr5_2:3975631-3975650 None:intergenic 45.0%
AAAATAGGCCGACGCAAACA+AGG - chr5_2:3975632-3975651 None:intergenic 45.0%
TCAAATTCGCCGCATCTGAA+CGG - chr5_2:3975732-3975751 None:intergenic 45.0%
TGATGCATCCATTGAAAGGG+CGG + chr5_2:3975749-3975768 Msa0750530:CDS 45.0%
AGCTTGAAAGGCAGATGCTA+AGG + chr5_2:3975847-3975866 Msa0750530:CDS 45.0%
CTTCCCTTTCAGAAGTCCAA+AGG - chr5_2:3976496-3976515 None:intergenic 45.0%
CACATTTGCTCCTCTTTGCT+CGG - chr5_2:3976764-3976783 None:intergenic 45.0%
AGAGAATCACTAGACTCAGG+CGG - chr5_2:3976795-3976814 None:intergenic 45.0%
TCCAGAGAATCACTAGACTC+AGG - chr5_2:3976798-3976817 None:intergenic 45.0%
CATAAGCATACTCCCCAAGT+TGG - chr5_2:3976860-3976879 None:intergenic 45.0%
! CAACTTGGGGAGTATGCTTA+TGG + chr5_2:3976858-3976877 Msa0750530:CDS 45.0%
! GAGTAAATAGGGAGGTATGG+TGG - chr5_2:3977315-3977334 None:intergenic 45.0%
TAGGGTACATTGGCCAATCT+AGG - chr5_2:3977411-3977430 None:intergenic 45.0%
AGGAAACAGAGAGACAGAGA+AGG + chr5_2:3977588-3977607 Msa0750530:intron 45.0%
CGCCTTTACACAAGTTGTGA+AGG + chr5_2:3977772-3977791 Msa0750530:intron 45.0%
CGTCATGTAACCATCTCTGT+TGG - chr5_2:3977811-3977830 None:intergenic 45.0%
! AACTGCAGAAACTGGTGATG+AGG + chr5_2:3979122-3979141 Msa0750530:intron 45.0%
!! ACAAGAAAGCACTAGCAGTG+AGG + chr5_2:3979155-3979174 Msa0750530:CDS 45.0%
ATAAAGGTGAGGCATGTCAC+TGG - chr5_2:3979211-3979230 None:intergenic 45.0%
ATACACCCTAACTCCTAGAG+AGG + chr5_2:3979482-3979501 Msa0750530:CDS 45.0%
! TGCAACCTCTCTAGGAGTTA+GGG - chr5_2:3979490-3979509 None:intergenic 45.0%
! TTGCAACCTCTCTAGGAGTT+AGG - chr5_2:3979491-3979510 None:intergenic 45.0%
GCTGGTAGATGTAGACTTGA+AGG + chr5_2:3979641-3979660 Msa0750530:CDS 45.0%
! CAATAGGGACTGACTCTTTC+GGG - chr5_2:3979680-3979699 None:intergenic 45.0%
TGTCAGTTGAGCCATCCTTA+AGG - chr5_2:3979764-3979783 None:intergenic 45.0%
! CCAATGGCTTGCATTATGAC+TGG - chr5_2:3979991-3980010 None:intergenic 45.0%
CCAGTCATAATGCAAGCCAT+TGG + chr5_2:3979988-3980007 Msa0750530:CDS 45.0%
GCAAGCCATTGGAAGAAGAA+CGG + chr5_2:3979999-3980018 Msa0750530:CDS 45.0%
TAAGGCCGTTCTTCTTCCAA+TGG - chr5_2:3980007-3980026 None:intergenic 45.0%
AAGAACGGCCTTAACAATGC+CGG + chr5_2:3980014-3980033 Msa0750530:CDS 45.0%
ATGACTAAACCAGAGGTCTC+TGG + chr5_2:3980188-3980207 Msa0750530:CDS 45.0%
TGACTAAACCAGAGGTCTCT+GGG + chr5_2:3980189-3980208 Msa0750530:CDS 45.0%
GTGATGGCACAACAAATTGC+TGG + chr5_2:3980386-3980405 Msa0750530:three_prime_UTR 45.0%
GGTGTAGAGCATACAAGTAG+GGG - chr5_2:3980740-3980759 None:intergenic 45.0%
CGGTGTAGAGCATACAAGTA+GGG - chr5_2:3980741-3980760 None:intergenic 45.0%
TCGGTGTAGAGCATACAAGT+AGG - chr5_2:3980742-3980761 None:intergenic 45.0%
!!! TTTTTTTTTTTTTTTTGTTT+TGG + chr5_2:3975038-3975057 Msa0750530:intron 5.0%
!!! TTTTTTTTTTTTTTTGTTTT+GGG + chr5_2:3975039-3975058 Msa0750530:intron 5.0%
!!! AAATTTTAAGAAAAAAATTA+GGG + chr5_2:3975955-3975974 Msa0750530:intron 5.0%
ATGGCCACGGTAGTTGTCAA+GGG - chr5_2:3974541-3974560 None:intergenic 50.0%
! GGTTAATGATGTGGCGGAGA+TGG - chr5_2:3974560-3974579 None:intergenic 50.0%
! TCATCGTTTTCCTTCACCGG+CGG + chr5_2:3974735-3974754 Msa0750530:five_prime_UTR 50.0%
AAAAGTTAAGCGGAGGGGAG+GGG + chr5_2:3974801-3974820 Msa0750530:five_prime_UTR 50.0%
GACCCAAACAAGGGATCCAA+CGG - chr5_2:3974866-3974885 None:intergenic 50.0%
ACCACGACCCGTTTCTTCTT+CGG - chr5_2:3974888-3974907 None:intergenic 50.0%
AGGTGAGGTCAGATGAGAAG+CGG - chr5_2:3974944-3974963 None:intergenic 50.0%
TTAACCGGAGTTCCAGATCG+AGG - chr5_2:3974964-3974983 None:intergenic 50.0%
TGGAACTCCGGTTAAGCTTC+TGG + chr5_2:3974969-3974988 Msa0750530:CDS 50.0%
GGAACTCCGGTTAAGCTTCT+GGG + chr5_2:3974970-3974989 Msa0750530:CDS 50.0%
! AAAGCCGAATTTCGGTGTGG+CGG - chr5_2:3975207-3975226 None:intergenic 50.0%
AATAGGCCGACGCAAACAAG+GGG - chr5_2:3975630-3975649 None:intergenic 50.0%
CATCTGCCTTTCAAGCTCCA+GGG - chr5_2:3975844-3975863 None:intergenic 50.0%
TTTGTAGGACTGTGGGCTCT+AGG + chr5_2:3976025-3976044 Msa0750530:intron 50.0%
GCCTGAGTCTAGTGATTCTC+TGG + chr5_2:3976794-3976813 Msa0750530:CDS 50.0%
! GAGGTATGGTGGGAACTAGT+AGG - chr5_2:3977304-3977323 None:intergenic 50.0%
AAATCTTACACGCGGACTCG+TGG + chr5_2:3978006-3978025 Msa0750530:intron 50.0%
TGATGGTTAAGGTGACAGGG+AGG - chr5_2:3978724-3978743 None:intergenic 50.0%
ACATGCCTCACCTTTATCCG+CGG + chr5_2:3979214-3979233 Msa0750530:CDS 50.0%
ACAGCTTCATTGCACGTTCG+AGG - chr5_2:3979243-3979262 None:intergenic 50.0%
! GGTCTGTTGCTGCTTCTGAT+AGG + chr5_2:3979313-3979332 Msa0750530:CDS 50.0%
TTGATTGGGATGAATGGCCG+TGG + chr5_2:3979523-3979542 Msa0750530:CDS 50.0%
TGATTGGGATGAATGGCCGT+GGG + chr5_2:3979524-3979543 Msa0750530:CDS 50.0%
GTAGTGTACTTCCACCAGCT+TGG + chr5_2:3979838-3979857 Msa0750530:CDS 50.0%
ATGACGATATGTGGGGACGA+GGG - chr5_2:3979896-3979915 None:intergenic 50.0%
AGAACGGCCTTAACAATGCC+GGG + chr5_2:3980015-3980034 Msa0750530:CDS 50.0%
CTTCTTGTCAATTGACGGCC+CGG - chr5_2:3980036-3980055 None:intergenic 50.0%
! TACGATTTTCTCTCCACGCC+GGG - chr5_2:3980320-3980339 None:intergenic 50.0%
! CTACGATTTTCTCTCCACGC+CGG - chr5_2:3980321-3980340 None:intergenic 50.0%
GCATACAAGTAGGGGACAGA+GGG - chr5_2:3980732-3980751 None:intergenic 50.0%
AGCATACAAGTAGGGGACAG+AGG - chr5_2:3980733-3980752 None:intergenic 50.0%
GCAACCCTTGACAACTACCG+TGG + chr5_2:3974534-3974553 Msa0750530:five_prime_UTR 55.0%
GATGGCCACGGTAGTTGTCA+AGG - chr5_2:3974542-3974561 None:intergenic 55.0%
GAGATGGATGGGGAGGGTTT+AGG + chr5_2:3974826-3974845 Msa0750530:exon 55.0%
! CGCCGTTGGATCCCTTGTTT+GGG + chr5_2:3974861-3974880 Msa0750530:CDS 55.0%
TCCGAAGAAGAAACGGGTCG+TGG + chr5_2:3974884-3974903 Msa0750530:CDS 55.0%
GAAGAAGAAACGGGTCGTGG+TGG + chr5_2:3974887-3974906 Msa0750530:CDS 55.0%
TGAGAAGCGGCAAGGTCATC+AGG - chr5_2:3974931-3974950 None:intergenic 55.0%
AGGTCAGATGAGAAGCGGCA+AGG - chr5_2:3974939-3974958 None:intergenic 55.0%
CATCTGACCTCACCTCGATC+TGG + chr5_2:3974949-3974968 Msa0750530:CDS 55.0%
! CTCACCTCGATCTGGAACTC+CGG + chr5_2:3974957-3974976 Msa0750530:CDS 55.0%
CCATCCGCCACACCGAAATT+CGG + chr5_2:3975200-3975219 Msa0750530:intron 55.0%
TCTGAACGGCTTCACTCGCT+TGG - chr5_2:3975718-3975737 None:intergenic 55.0%
CGAGTGAAGCCGTTCAGATG+CGG + chr5_2:3975720-3975739 Msa0750530:CDS 55.0%
AGCTGTCTCCGCCCTTTCAA+TGG - chr5_2:3975760-3975779 None:intergenic 55.0%
AGATGCTATTCTCCACGCCC+TGG + chr5_2:3975824-3975843 Msa0750530:CDS 55.0%
GCATCTGCCTTTCAAGCTCC+AGG - chr5_2:3975845-3975864 None:intergenic 55.0%
!! TGTGGGCTCTAGGCTCTGTT+TGG + chr5_2:3976035-3976054 Msa0750530:intron 55.0%
TGGTTAAGGTGACAGGGAGG+AGG - chr5_2:3978721-3978740 None:intergenic 55.0%
CATGCCTCACCTTTATCCGC+GGG + chr5_2:3979215-3979234 Msa0750530:CDS 55.0%
TTCGAGGTTCCCGCGGATAA+AGG - chr5_2:3979227-3979246 None:intergenic 55.0%
AACCACAAGAGAATGGGGCC+TGG + chr5_2:3979387-3979406 Msa0750530:CDS 55.0%
AACCAGGCCCCATTCTCTTG+TGG - chr5_2:3979392-3979411 None:intergenic 55.0%
AAAGCAGGCTGATCCTCCCA+CGG - chr5_2:3979543-3979562 None:intergenic 55.0%
GTGTACTTCCACCAGCTTGG+AGG + chr5_2:3979841-3979860 Msa0750530:CDS 55.0%
GATGACGATATGTGGGGACG+AGG - chr5_2:3979897-3979916 None:intergenic 55.0%
TTGACGGCCCGGCATTGTTA+AGG - chr5_2:3980025-3980044 None:intergenic 55.0%
CGGCGTGGAGAGAAAATCGT+AGG + chr5_2:3980319-3980338 Msa0750530:CDS 55.0%
! TGATGTGGCGGAGATGGCCA+CGG - chr5_2:3974554-3974573 None:intergenic 60.0%
! TCGTTTTCCTTCACCGGCGG+CGG + chr5_2:3974738-3974757 Msa0750530:five_prime_UTR 60.0%
TGGGGAGGGTTTAGGTGCAG+AGG + chr5_2:3974834-3974853 Msa0750530:CDS 60.0%
GCGCCGTTGGATCCCTTGTT+TGG + chr5_2:3974860-3974879 Msa0750530:CDS 60.0%
AAGAAACGGGTCGTGGTGGC+CGG + chr5_2:3974891-3974910 Msa0750530:CDS 60.0%
CGGAGTTCCAGATCGAGGTG+AGG - chr5_2:3974959-3974978 None:intergenic 60.0%
! CCGAATTTCGGTGTGGCGGA+TGG - chr5_2:3975203-3975222 None:intergenic 60.0%
TGAAAGGGCGGAGACAGCTC+TGG + chr5_2:3975761-3975780 Msa0750530:CDS 60.0%
GAAAGGGCGGAGACAGCTCT+GGG + chr5_2:3975762-3975781 Msa0750530:CDS 60.0%
TCCACGCCCTGGAGCTTGAA+AGG + chr5_2:3975835-3975854 Msa0750530:CDS 60.0%
GCGCAGCATTCCGAGCAAAG+AGG + chr5_2:3976751-3976770 Msa0750530:CDS 60.0%
ACACGCGGACTCGTGGATGA+TGG + chr5_2:3978013-3978032 Msa0750530:intron 60.0%
GGTTCCCGCGGATAAAGGTG+AGG - chr5_2:3979222-3979241 None:intergenic 60.0%
TTGCACGTTCGAGGTTCCCG+CGG - chr5_2:3979234-3979253 None:intergenic 60.0%
TTGGGATGAATGGCCGTGGG+AGG + chr5_2:3979527-3979546 Msa0750530:CDS 60.0%
TGGGGGGAAGGGATCAATGC+TGG + chr5_2:3979623-3979642 Msa0750530:CDS 60.0%
GTAGTGAGCCCAGAGACCTC+TGG - chr5_2:3980200-3980219 None:intergenic 60.0%
GGATGTGTTGAATCCCGGCG+TGG + chr5_2:3980304-3980323 Msa0750530:CDS 60.0%
AAGTAGGGGACAGAGGGACG+AGG - chr5_2:3980726-3980745 None:intergenic 60.0%
AGTTAAGCGGAGGGGAGGGG+AGG + chr5_2:3974804-3974823 Msa0750530:five_prime_UTR 65.0%
AGGGGAGGGGAGGAGATGGA+TGG + chr5_2:3974814-3974833 Msa0750530:exon 65.0%
GGGGAGGGGAGGAGATGGAT+GGG + chr5_2:3974815-3974834 Msa0750530:exon 65.0%
GGGAGGGGAGGAGATGGATG+GGG + chr5_2:3974816-3974835 Msa0750530:exon 65.0%
AGGGGAGGAGATGGATGGGG+AGG + chr5_2:3974819-3974838 Msa0750530:exon 65.0%
GGGGAGGAGATGGATGGGGA+GGG + chr5_2:3974820-3974839 Msa0750530:exon 65.0%
GGTGCAGAGGATTGCGCCGT+TGG + chr5_2:3974847-3974866 Msa0750530:CDS 65.0%
AGAAACGGGTCGTGGTGGCC+GGG + chr5_2:3974892-3974911 Msa0750530:CDS 65.0%
GCCTTTCAAGCTCCAGGGCG+TGG - chr5_2:3975839-3975858 None:intergenic 65.0%
CTCGCAGTCCTCCAAGCTGG+TGG - chr5_2:3979852-3979871 None:intergenic 65.0%
CACCAGCTTGGAGGACTGCG+AGG + chr5_2:3979850-3979869 Msa0750530:CDS 65.0%
CTCCTCGCAGTCCTCCAAGC+TGG - chr5_2:3979855-3979874 None:intergenic 65.0%
TACGGTGGCGCAACCGCCGC+CGG - chr5_2:3974754-3974773 None:intergenic 75.0%
GCGGAGGGGAGGGGAGGAGA+TGG + chr5_2:3974810-3974829 Msa0750530:exon 75.0%
! GGCGCAACCGCCGCCGGTGA+AGG - chr5_2:3974748-3974767 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr5_2 gene 3974496 3980813 3974496 ID=Msa0750530;Name=Msa0750530
chr5_2 mRNA 3974496 3980813 3974496 ID=Msa0750530-mRNA-1;Parent=Msa0750530;Name=Msa0750530-mRNA-1;_AED=0.09;_eAED=0.09;_QI=333|1|1|1|1|1|4|473|623
chr5_2 exon 3974496 3975010 3974496 ID=Msa0750530-mRNA-1:exon:1474;Parent=Msa0750530-mRNA-1
chr5_2 exon 3975692 3975885 3975692 ID=Msa0750530-mRNA-1:exon:1475;Parent=Msa0750530-mRNA-1
chr5_2 exon 3976736 3977020 3976736 ID=Msa0750530-mRNA-1:exon:1476;Parent=Msa0750530-mRNA-1
chr5_2 exon 3979130 3980813 3979130 ID=Msa0750530-mRNA-1:exon:1477;Parent=Msa0750530-mRNA-1
chr5_2 five_prime_UTR 3974496 3974828 3974496 ID=Msa0750530-mRNA-1:five_prime_utr;Parent=Msa0750530-mRNA-1
chr5_2 CDS 3974829 3975010 3974829 ID=Msa0750530-mRNA-1:cds;Parent=Msa0750530-mRNA-1
chr5_2 CDS 3975692 3975885 3975692 ID=Msa0750530-mRNA-1:cds;Parent=Msa0750530-mRNA-1
chr5_2 CDS 3976736 3977020 3976736 ID=Msa0750530-mRNA-1:cds;Parent=Msa0750530-mRNA-1
chr5_2 CDS 3979130 3980340 3979130 ID=Msa0750530-mRNA-1:cds;Parent=Msa0750530-mRNA-1
chr5_2 three_prime_UTR 3980341 3980813 3980341 ID=Msa0750530-mRNA-1:three_prime_utr;Parent=Msa0750530-mRNA-1
Gene Sequence

>Msa0750530

ATGGATGGGGAGGGTTTAGGTGCAGAGGATTGCGCCGTTGGATCCCTTGTTTGGGTCCGAAGAAGAAACGGGTCGTGGTGGCCGGGTCAAATACTCGATCCTGATGACCTTGCCGCTTCTCATCTGACCTCACCTCGATCTGGAACTCCGGTTAAGCTTCTGGGAAGAGAAGATGCCAGCGTAGATTGGTATAATTTGGAGAAATCCAAGCGAGTGAAGCCGTTCAGATGCGGCGAATTTGATGCATCCATTGAAAGGGCGGAGACAGCTCTGGGTATGCCATTGAAGAAAAGAGAGAAATATGCACGAAGAGAAGATGCTATTCTCCACGCCCTGGAGCTTGAAAGGCAGATGCTAAGGAAACAAGATAAATTAGGATCTGGGCAAATAGGCGCAGCATTCCGAGCAAAGAGGAGCAAATGTGTGTACTTGCCGCCTGAGTCTAGTGATTCTCTGGATTACAATGAAACTCTAGCCCATGTTCCAATATCATCTTCCCAACTTGGGGAGTATGCTTATGGAAGTTCATTTGCTGAGGAGAGCGAATCTGCTTTTCTGAATGATGTTGAATCTGATTCTTCTGAAACTGCTTCTATTAAATCGGAATCAGATTCTTCTGAAACAGAACTAGACAATGACGAAGACATGACTATATTTTCAGAAACTGGTGATGAGGACGACGAAGAACAAGAAAGCACTAGCAGTGAGGAGCATGATGAGTTAGCTGAGTTAGCAACTTCCAGTGACATGCCTCACCTTTATCCGCGGGAACCTCGAACGTGCAATGAAGCTGTATCCAAATGGCAATTAAAAGGAAAGAGGAATAACCGTAACCTTGTAAAAAGGTCTGTTGCTGCTTCTGATAGGAAAGACGTTGTTTTATATGGAGCAGATATTGAAGGACAGAGAAGCCATTTAAACCACAAGAGAATGGGGCCTGGTTATCCTTACTACAGAAATGACTATAGTGATGCTCCTGATGACAGCGATCAAATGTTTGGATCAGAAGATGAATACACCCTAACTCCTAGAGAGGTTGCAAAAAGTCAAGGTCTTGATTGGGATGAATGGCCGTGGGAGGATCAGCCTGCTTTGAAAGAATATTCGGATTTTAAAGGGTTTGCTTCATTATATAGTGATCCTTATCATTATGATGGGGGGAAGGGATCAATGCTGGTAGATGTAGACTTGAAGGTTCAGGCAAGTTACCCGAAAGAGTCAGTCCCTATTGTATCTATTACGAGCAAGTTAGATGGGAGTTCTATAATTGGACGCCCAATCCCAATTGAAGTCCTTAAGGATGGCTCAACTGACAATCTATTTTCTGCAATTGATGACTTCAGTAATGATATGATTGGCTACGAGGGAAGTAGTGTACTTCCACCAGCTTGGAGGACTGCGAGGAGAACAGCTAACTTTCGTGTCCCTCGTCCCCACATATCGTCATCAAATGTTGATGAAGACTTCTCCTTAGATCAGGAAAGAAATAATGGATATAAGAGATTAAATGGTGGAAATTCCAGTCATAATGCAAGCCATTGGAAGAAGAACGGCCTTAACAATGCCGGGCCGTCAATTGACAAGAAGTCCTTTAAAAAGAGTGCAAAAAAAGTGAGCTTGTCATCTAGTCAGAAAACTAGAACCCTTTCCTCTTTATCTATTGAAGATAATCTTGGTAGAAAACCATCACTTACTAGAAGCTTTTATCGAACAGACAAGATGACTAAACCAGAGGTCTCTGGGCTCACTACTGTAGCTTGCATACCAGTTAAACTGGTATTTAGTAGATTACTTGAGAAGATTAATAGGCCACCTTTAAAAGCATCTACTAATGTGGATGTGTTGAATCCCGGCGTGGAGAGAAAATCGTAG
Protein sequence

>Msa0750530

MDGEGLGAEDCAVGSLVWVRRRNGSWWPGQILDPDDLAASHLTSPRSGTPVKLLGREDASVDWYNLEKSKRVKPFRCGEFDASIERAETALGMPLKKREKYARREDAILHALELERQMLRKQDKLGSGQIGAAFRAKRSKCVYLPPESSDSLDYNETLAHVPISSSQLGEYAYGSSFAEESESAFLNDVESDSSETASIKSESDSSETELDNDEDMTIFSETGDEDDEEQESTSSEEHDELAELATSSDMPHLYPREPRTCNEAVSKWQLKGKRNNRNLVKRSVAASDRKDVVLYGADIEGQRSHLNHKRMGPGYPYYRNDYSDAPDDSDQMFGSEDEYTLTPREVAKSQGLDWDEWPWEDQPALKEYSDFKGFASLYSDPYHYDGGKGSMLVDVDLKVQASYPKESVPIVSITSKLDGSSIIGRPIPIEVLKDGSTDNLFSAIDDFSNDMIGYEGSSVLPPAWRTARRTANFRVPRPHISSSNVDEDFSLDQERNNGYKRLNGGNSSHNASHWKKNGLNNAGPSIDKKSFKKSAKKVSLSSSQKTRTLSSLSIEDNLGRKPSLTRSFYRTDKMTKPEVSGLTTVACIPVKLVFSRLLEKINRPPLKASTNVDVLNPGVERKS*