AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0688610

Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688610 MtrunA17_Chr5g0395811 98.074 623 10 2 1 623 1 621 0.0 1245
Msa0688610 MtrunA17_Chr4g0039531 54.883 512 198 12 126 623 244 736 2.09e-158 472
Msa0688610 MtrunA17_Chr4g0039531 70.139 144 38 2 10 148 2 145 1.45e-56 204
Msa0688610 MtrunA17_Chr8g0341521 67.857 112 36 0 10 121 19 130 3.80e-41 159
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0688610 AT3G03140.1 36.862 529 277 20 125 609 243 758 1.00e-65 230
Msa0688610 AT3G03140.1 74.400 125 32 0 1 125 1 125 6.24e-56 202
Msa0688610 AT3G21295.3 63.158 114 42 0 8 121 11 124 7.93e-40 153
Msa0688610 AT3G21295.2 60.833 120 47 0 2 121 5 124 3.17e-39 153
Msa0688610 AT3G21295.1 63.158 114 42 0 8 121 11 124 3.22e-39 153
Msa0688610 AT1G51745.1 54.098 122 54 1 2 123 5 124 3.61e-33 135

Find 215 sgRNAs with CRISPR-Local

Find 495 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCATTCTCTTGTGGTTTAAA+TGG 0.164129 4_4:+54734998 None:intergenic
TAACAGAGATTGGTATAATT+TGG 0.169000 4_4:-54739496 Msa0688610:intron
CACAAAATTTCAATCAGATT+TGG 0.200228 4_4:+54740528 None:intergenic
ACAAAATTTCAATCAGATTT+GGG 0.249464 4_4:+54740529 None:intergenic
TTGCAACCTCTCTAGGAGTT+AGG 0.253177 4_4:+54734890 None:intergenic
CAATAGGGACTGACTCTTTC+GGG 0.255657 4_4:+54734701 None:intergenic
AATGGATATAAGAGATTAAA+TGG 0.257606 4_4:-54734421 Msa0688610:CDS
TGGAACTCCGGTTAAGCTTC+TGG 0.266144 4_4:-54740227 Msa0688610:CDS
ATTATTTCTTTCCTGATCTA+AGG 0.266623 4_4:+54734441 None:intergenic
TCTTCTGTTTATCAGTCTTC+AGG 0.275069 4_4:+54733883 None:intergenic
GCGCCGTTGGATCCCTTGTT+TGG 0.280360 4_4:-54740336 Msa0688610:CDS
TGCTTTCAGTAGTGTGGATT+AGG 0.289825 4_4:+54740504 None:intergenic
CGCCGTTGGATCCCTTGTTT+GGG 0.307336 4_4:-54740335 Msa0688610:CDS
CTACTAAATACCAGTTTAAC+TGG 0.311660 4_4:+54734145 None:intergenic
GATTACTTGAGAAGATTAAT+AGG 0.314220 4_4:-54734123 Msa0688610:CDS
CTAAGGAAACAAGATAAATT+AGG 0.318396 4_4:-54739318 Msa0688610:intron
TTAGATGGGAGTTCTATAAT+TGG 0.320462 4_4:-54734661 Msa0688610:CDS
TATCAGTCTTCAGGATGAAT+TGG 0.320732 4_4:+54733892 None:intergenic
GAGATGGATGGGGAGGGTTT+AGG 0.322136 4_4:-54740370 Msa0688610:CDS
GCCTGCTTTGAAAGAATATT+CGG 0.324033 4_4:-54734824 Msa0688610:CDS
CAACTTGGGGAGTATGCTTA+TGG 0.325361 4_4:-54738336 Msa0688610:CDS
GTATCCAAATGGCAATTAAA+AGG 0.330224 4_4:-54735117 Msa0688610:CDS
TAGAAGGACCGGTTTGGATT+TGG 0.333856 4_4:+54740618 None:intergenic
ACCACGACCCGTTTCTTCTT+CGG 0.334820 4_4:+54740311 None:intergenic
GTCAAACAAGTTCTCAGTTT+CGG 0.347282 4_4:+54733620 None:intergenic
ATCAGTCTTCAGGATGAATT+GGG 0.353757 4_4:+54733893 None:intergenic
ATAACCGTAACCTTGTAAAA+AGG 0.356178 4_4:-54735086 Msa0688610:CDS
TGAAACTGCTTCTATTAAAT+CGG 0.357173 4_4:-54738253 Msa0688610:CDS
CCAATATCATCTTCCCAACT+TGG 0.357429 4_4:-54738351 Msa0688610:CDS
TTAGATCAGGAAAGAAATAA+TGG 0.359142 4_4:-54734439 Msa0688610:CDS
CCAAGTTGGGAAGATGATAT+TGG 0.359457 4_4:+54738351 None:intergenic
AAAATATGAGCAATTTAAGT+TGG 0.363830 4_4:-54733685 Msa0688610:three_prime_UTR
TGAAGTTTGAATCTTCTAGA+AGG 0.364578 4_4:+54740602 None:intergenic
CCATCCTTAAGGACTTCAAT+TGG 0.381058 4_4:+54734628 None:intergenic
TTGCTCGTAATAGATACAAT+AGG 0.381680 4_4:+54734685 None:intergenic
TGCAACCTCTCTAGGAGTTA+GGG 0.381710 4_4:+54734891 None:intergenic
GGGAGGGGAGGAGATGGATG+GGG 0.386941 4_4:-54740380 Msa0688610:exon
TTCGAGGTTCCCGCGGATAA+AGG 0.387198 4_4:+54735154 None:intergenic
GCATCTGCCTTTCAAGCTCC+AGG 0.391605 4_4:+54739340 None:intergenic
ATGACTAAACCAGAGGTCTC+TGG 0.391626 4_4:-54734190 Msa0688610:CDS
ACAATAGGGACTGACTCTTT+CGG 0.391982 4_4:+54734700 None:intergenic
AATCGTATTTAATTGATTGT+TGG 0.393488 4_4:-54733945 Msa0688610:three_prime_UTR
TCTCTTCCCAGAAGCTTAAC+CGG 0.395300 4_4:+54740220 None:intergenic
AAATATGAGCAATTTAAGTT+GGG 0.398243 4_4:-54733684 Msa0688610:three_prime_UTR
GCGGAGGGGAGGGGAGGAGA+TGG 0.399238 4_4:-54740386 Msa0688610:exon
AAGAAACGGGTCGTGGTGGC+CGG 0.399939 4_4:-54740305 Msa0688610:CDS
TTATCTATTGAAGATAATCT+TGG 0.404235 4_4:-54734256 Msa0688610:CDS
GATGACAGCGATCAAATGTT+TGG 0.412210 4_4:-54734931 Msa0688610:CDS
AGGGGAGGGGAGGAGATGGA+TGG 0.415178 4_4:-54740382 Msa0688610:exon
TCTGAACGGCTTCACTCGCT+TGG 0.416919 4_4:+54739467 None:intergenic
TGAGAAGCGGCAAGGTCATC+AGG 0.419003 4_4:+54740268 None:intergenic
ACCGTATCAATTCATCAAGC+TGG 0.421376 4_4:-54740428 Msa0688610:five_prime_UTR
AGGGGAGGAGATGGATGGGG+AGG 0.421381 4_4:-54740377 Msa0688610:exon
AAAAGTTAAGCGGAGGGGAG+GGG 0.422206 4_4:-54740395 Msa0688610:five_prime_UTR
CACATTTGCTCCTCTTTGCT+CGG 0.423627 4_4:+54738433 None:intergenic
TCTATTACGAGCAAGTTAGA+TGG 0.426232 4_4:-54734676 Msa0688610:CDS
TAAGGACTTCAATTGGGATT+GGG 0.426606 4_4:+54734635 None:intergenic
GGGGAGGGGAGGAGATGGAT+GGG 0.427742 4_4:-54740381 Msa0688610:exon
GCTTTCAGTAGTGTGGATTA+GGG 0.428399 4_4:+54740505 None:intergenic
CATCTGACCTCACCTCGATC+TGG 0.430909 4_4:-54740247 Msa0688610:CDS
AGCTTGCATACCAGTTAAAC+TGG 0.431814 4_4:-54734155 Msa0688610:CDS
TTGACGGCCCGGCATTGTTA+AGG 0.432666 4_4:+54734356 None:intergenic
TGAAAGGGCGGAGACAGCTC+TGG 0.433854 4_4:-54739421 Msa0688610:CDS
ATCTTCTAGAAGGACCGGTT+TGG 0.434842 4_4:+54740612 None:intergenic
AACATTTGATCGCTGTCATC+AGG 0.436781 4_4:+54734934 None:intergenic
TTCAATAGATAAAGAGGAAA+GGG 0.436850 4_4:+54734267 None:intergenic
GCCTGAGTCTAGTGATTCTC+TGG 0.439209 4_4:-54738400 Msa0688610:CDS
AAGGACTTCTTGTCAATTGA+CGG 0.439535 4_4:+54734340 None:intergenic
AGATGTAGACTTGAAGGTTC+AGG 0.441230 4_4:-54734731 Msa0688610:CDS
CATTTAAACCACAAGAGAAT+GGG 0.443241 4_4:-54734997 Msa0688610:CDS
TTAAGGACTTCAATTGGGAT+TGG 0.443487 4_4:+54734634 None:intergenic
GGAACTCCGGTTAAGCTTCT+GGG 0.446719 4_4:-54740226 Msa0688610:CDS
AGCTCTATTTGATGATTGAT+AGG 0.450091 4_4:-54733756 Msa0688610:three_prime_UTR
AATCCCAATTGAAGTCCTTA+AGG 0.453310 4_4:-54734632 Msa0688610:CDS
CTATAGTCATTTCTGTAGTA+AGG 0.453653 4_4:+54734964 None:intergenic
GCCTTTCAAGCTCCAGGGCG+TGG 0.453849 4_4:+54739346 None:intergenic
GCTGGTAGATGTAGACTTGA+AGG 0.453903 4_4:-54734737 Msa0688610:CDS
ATTATCTTCAATAGATAAAG+AGG 0.455659 4_4:+54734261 None:intergenic
AGCTGTCTCCGCCCTTTCAA+TGG 0.456193 4_4:+54739425 None:intergenic
CATCCTTAAGGACTTCAATT+GGG 0.457744 4_4:+54734629 None:intergenic
AGTGATCCTTATCATTATGA+TGG 0.463734 4_4:-54734775 Msa0688610:CDS
CCATTTAAACCACAAGAGAA+TGG 0.464770 4_4:-54734998 Msa0688610:CDS
AAATACGATTTCTATTTCGT+TGG 0.469150 4_4:+54733958 None:intergenic
GGTCTGTTGCTGCTTCTGAT+AGG 0.470300 4_4:-54735065 Msa0688610:CDS
TGTCAGTTGAGCCATCCTTA+AGG 0.470737 4_4:+54734617 None:intergenic
CAATATCATCTTCCCAACTT+GGG 0.470747 4_4:-54738350 Msa0688610:CDS
TGAAGACTTCTCCTTAGATC+AGG 0.472242 4_4:-54734452 Msa0688610:CDS
TCCGAATATTCTTTCAAAGC+AGG 0.474772 4_4:+54734823 None:intergenic
GGTGCAGAGGATTGCGCCGT+TGG 0.476058 4_4:-54740349 Msa0688610:CDS
GTTTGGGTCCGAAGAAGAAA+CGG 0.476480 4_4:-54740319 Msa0688610:CDS
AATTTGATGCATCCATTGAA+AGG 0.477697 4_4:-54739437 Msa0688610:CDS
CAACATTTGATGACGATATG+TGG 0.479561 4_4:+54734476 None:intergenic
CATAAGCATACTCCCCAAGT+TGG 0.481163 4_4:+54738337 None:intergenic
TTTGGGTCCGAAGAAGAAAC+GGG 0.485259 4_4:-54740318 Msa0688610:CDS
TGCTCGTAATAGATACAATA+GGG 0.488620 4_4:+54734686 None:intergenic
TGTAACCAATCCTAGTTGTA+AGG 0.489542 4_4:+54740701 None:intergenic
AGTTAAGCGGAGGGGAGGGG+AGG 0.491607 4_4:-54740392 Msa0688610:five_prime_UTR
TAATAATTATCTTGCAGTGA+TGG 0.493971 4_4:-54734008 Msa0688610:three_prime_UTR
TTTGAATCTTCTAGAAGGAC+CGG 0.496692 4_4:+54740607 None:intergenic
CTCCTCGCAGTCCTCCAAGC+TGG 0.497373 4_4:+54734526 None:intergenic
GTGATGGCACAACAAATTGC+TGG 0.497763 4_4:-54733992 Msa0688610:three_prime_UTR
ATCATTAACCAAATCCAAAC+CGG 0.498808 4_4:-54740626 Msa0688610:five_prime_UTR
AGAAACGGGTCGTGGTGGCC+GGG 0.499873 4_4:-54740304 Msa0688610:CDS
CCGTATCAATTCATCAAGCT+GGG 0.506076 4_4:-54740427 Msa0688610:five_prime_UTR
GTGATCCTTATCATTATGAT+GGG 0.506423 4_4:-54734774 Msa0688610:CDS
TAAGGCCGTTCTTCTTCCAA+TGG 0.508139 4_4:+54734374 None:intergenic
AACCAGGCCCCATTCTCTTG+TGG 0.510552 4_4:+54734989 None:intergenic
GGCGCAACCGCCGCCGGTGA+AGG 0.510950 4_4:+54740451 None:intergenic
ATAAGCATACTCCCCAAGTT+GGG 0.516000 4_4:+54738338 None:intergenic
CCAATGGCTTGCATTATGAC+TGG 0.516730 4_4:+54734390 None:intergenic
TCCACGCCCTGGAGCTTGAA+AGG 0.516755 4_4:-54739347 Msa0688610:CDS
TACGGTGGCGCAACCGCCGC+CGG 0.516951 4_4:+54740445 None:intergenic
AACATTTGATGACGATATGT+GGG 0.517456 4_4:+54734477 None:intergenic
AAGGTCTTGATTGGGATGAA+TGG 0.518276 4_4:-54734861 Msa0688610:CDS
CGGTGTAGAGCATACAAGTA+GGG 0.521947 4_4:+54733640 None:intergenic
ACAGCTTCATTGCACGTTCG+AGG 0.523686 4_4:+54735138 None:intergenic
AGAACGGCCTTAACAATGCC+GGG 0.524186 4_4:-54734363 Msa0688610:CDS
AGCTTGAAAGGCAGATGCTA+AGG 0.525873 4_4:-54739335 Msa0688610:CDS
ATTTGATGCATCCATTGAAA+GGG 0.526659 4_4:-54739436 Msa0688610:CDS
CAAAATTTCAATCAGATTTG+GGG 0.526980 4_4:+54740530 None:intergenic
TTATATGGAGCAGATATTGA+AGG 0.527413 4_4:-54735030 Msa0688610:CDS
TTCTTCTTCGGACCCAAACA+AGG 0.527567 4_4:+54740323 None:intergenic
TGACTAAACCAGAGGTCTCT+GGG 0.528670 4_4:-54734189 Msa0688610:CDS
CTCACCTCGATCTGGAACTC+CGG 0.529139 4_4:-54740239 Msa0688610:CDS
AATATGAGCAATTTAAGTTG+GGG 0.532478 4_4:-54733683 Msa0688610:three_prime_UTR
TTGATTGGGATGAATGGCCG+TGG 0.533085 4_4:-54734855 Msa0688610:CDS
AATGGCAATTAAAAGGAAAG+AGG 0.536424 4_4:-54735110 Msa0688610:CDS
CTCGCAGTCCTCCAAGCTGG+TGG 0.539878 4_4:+54734529 None:intergenic
AAGAACGGCCTTAACAATGC+CGG 0.541891 4_4:-54734364 Msa0688610:CDS
CCCAGCTTGATGAATTGATA+CGG 0.542016 4_4:+54740427 None:intergenic
ATAAAGGTGAGGCATGTCAC+TGG 0.542681 4_4:+54735170 None:intergenic
GCAATGAAGCTGTATCCAAA+TGG 0.548001 4_4:-54735128 Msa0688610:CDS
CTTCTTGTCAATTGACGGCC+CGG 0.548257 4_4:+54734345 None:intergenic
GATGGCCACGGTAGTTGTCA+AGG 0.549940 4_4:+54740657 None:intergenic
AGATGCTATTCTCCACGCCC+TGG 0.550064 4_4:-54739358 Msa0688610:CDS
GGGGAGGAGATGGATGGGGA+GGG 0.553319 4_4:-54740376 Msa0688610:exon
CTATTACGAGCAAGTTAGAT+GGG 0.553342 4_4:-54734675 Msa0688610:CDS
GTAGTGAGCCCAGAGACCTC+TGG 0.554233 4_4:+54734181 None:intergenic
GGTTAATGATGTGGCGGAGA+TGG 0.554841 4_4:+54740639 None:intergenic
GTGTACTTCCACCAGCTTGG+AGG 0.555706 4_4:-54734537 Msa0688610:CDS
GTAGTGTACTTCCACCAGCT+TGG 0.557455 4_4:-54734540 Msa0688610:CDS
TGAAACTGCTTTCAGTAGTG+TGG 0.557725 4_4:+54740498 None:intergenic
GCATACAAGTAGGGGACAGA+GGG 0.558569 4_4:+54733649 None:intergenic
CCAGTCATAATGCAAGCCAT+TGG 0.558583 4_4:-54734390 Msa0688610:CDS
TTTGGATTTGGTTAATGATG+TGG 0.560550 4_4:+54740630 None:intergenic
CTTCAATAGATAAAGAGGAA+AGG 0.560576 4_4:+54734266 None:intergenic
TCCGAAGAAGAAACGGGTCG+TGG 0.563277 4_4:-54740312 Msa0688610:CDS
TAAAAGCTTCTAGTAAGTGA+TGG 0.563281 4_4:+54734226 None:intergenic
TTTAAAAGCATCTACTAATG+TGG 0.564522 4_4:-54734095 Msa0688610:CDS
AACCACAAGAGAATGGGGCC+TGG 0.572020 4_4:-54734991 Msa0688610:CDS
TGGGGAGGGTTTAGGTGCAG+AGG 0.573698 4_4:-54740362 Msa0688610:CDS
AGCATACAAGTAGGGGACAG+AGG 0.575724 4_4:+54733648 None:intergenic
AAAATTTCAATCAGATTTGG+GGG 0.577680 4_4:+54740531 None:intergenic
TTATGGAAGTTCATTTGCTG+AGG 0.579123 4_4:-54738319 Msa0688610:CDS
TCGGTGTAGAGCATACAAGT+AGG 0.585711 4_4:+54733639 None:intergenic
AATGTGGATGTGTTGAATCC+CGG 0.586904 4_4:-54734079 Msa0688610:CDS
TGTGAGAATTCTACACTACA+AGG 0.589547 4_4:+54733840 None:intergenic
AATATCATCTTCCCAACTTG+GGG 0.592578 4_4:-54738349 Msa0688610:CDS
CATGCCTCACCTTTATCCGC+GGG 0.593895 4_4:-54735163 Msa0688610:CDS
GAAAGGGCGGAGACAGCTCT+GGG 0.594889 4_4:-54739420 Msa0688610:CDS
AACTGCAGAAACTGGTGATG+AGG 0.595711 4_4:-54735256 Msa0688610:intron
CGAGTGAAGCCGTTCAGATG+CGG 0.598434 4_4:-54739462 Msa0688610:CDS
CCAATTGAAGTCCTTAAGGA+TGG 0.599661 4_4:-54734628 Msa0688610:CDS
GATGACGATATGTGGGGACG+AGG 0.600202 4_4:+54734484 None:intergenic
CATCTGCCTTTCAAGCTCCA+GGG 0.601453 4_4:+54739341 None:intergenic
GGGAAGATGATATTGGAACA+TGG 0.604182 4_4:+54738358 None:intergenic
TCAAATTCGCCGCATCTGAA+CGG 0.607632 4_4:+54739453 None:intergenic
GGAAGATGATATTGGAACAT+GGG 0.607866 4_4:+54738359 None:intergenic
GACCCAAACAAGGGATCCAA+CGG 0.608724 4_4:+54740333 None:intergenic
TGATGTGGCGGAGATGGCCA+CGG 0.610939 4_4:+54740645 None:intergenic
GACTTCAGTAATGATATGAC+TGG 0.614342 4_4:-54734574 Msa0688610:CDS
GCAAGCCATTGGAAGAAGAA+CGG 0.617037 4_4:-54734379 Msa0688610:CDS
ATCCTTATCATTATGATGGG+GGG 0.621541 4_4:-54734771 Msa0688610:CDS
TGATGCATCCATTGAAAGGG+CGG 0.623713 4_4:-54739433 Msa0688610:CDS
TTGGGATGAATGGCCGTGGG+AGG 0.625534 4_4:-54734851 Msa0688610:CDS
GATCCTTATCATTATGATGG+GGG 0.627693 4_4:-54734772 Msa0688610:CDS
TCCAGAGAATCACTAGACTC+AGG 0.629818 4_4:+54738399 None:intergenic
TTGCACGTTCGAGGTTCCCG+CGG 0.629874 4_4:+54735147 None:intergenic
TGATTGGGATGAATGGCCGT+GGG 0.629990 4_4:-54734854 Msa0688610:CDS
TGATCCTTATCATTATGATG+GGG 0.631936 4_4:-54734773 Msa0688610:CDS
TTTCTGTAGTAAGGATAACC+AGG 0.632972 4_4:+54734973 None:intergenic
CGGTGAAGGAAAACGATGAA+CGG 0.634035 4_4:+54740465 None:intergenic
TCTTCTTCGGACCCAAACAA+GGG 0.634856 4_4:+54740324 None:intergenic
ACATGCCTCACCTTTATCCG+CGG 0.634920 4_4:-54735164 Msa0688610:CDS
AAGTAGGGGACAGAGGGACG+AGG 0.635254 4_4:+54733655 None:intergenic
AGGTGAGGTCAGATGAGAAG+CGG 0.637403 4_4:+54740255 None:intergenic
CACCAGCTTGGAGGACTGCG+AGG 0.639410 4_4:-54734528 Msa0688610:CDS
ATGGCCACGGTAGTTGTCAA+GGG 0.641239 4_4:+54740658 None:intergenic
AGGTCAGATGAGAAGCGGCA+AGG 0.642030 4_4:+54740260 None:intergenic
AATGATATGACTGGCTACGA+GGG 0.643107 4_4:-54734565 Msa0688610:CDS
AAAGCAGGCTGATCCTCCCA+CGG 0.647660 4_4:+54734838 None:intergenic
CGGCGTGGAGAGAAAATCGT+AGG 0.648319 4_4:-54734059 Msa0688610:exon
GGATTTGGTTAATGATGTGG+CGG 0.651298 4_4:+54740633 None:intergenic
GGATATAAGAGATTAAATGG+TGG 0.658972 4_4:-54734418 Msa0688610:CDS
GAAGAAGAAACGGGTCGTGG+TGG 0.659280 4_4:-54740309 Msa0688610:CDS
ATTTAAACCACAAGAGAATG+GGG 0.661307 4_4:-54734996 Msa0688610:CDS
AGCTTGATGAATTGATACGG+TGG 0.666136 4_4:+54740430 None:intergenic
GCGCAGCATTCCGAGCAAAG+AGG 0.666694 4_4:-54738443 Msa0688610:CDS
ATGACGATATGTGGGGACGA+GGG 0.668022 4_4:+54734485 None:intergenic
TCAGTCTTCAGGATGAATTG+GGG 0.668572 4_4:+54733894 None:intergenic
CGTATCAATTCATCAAGCTG+GGG 0.675897 4_4:-54740426 Msa0688610:five_prime_UTR
TAATGATATGACTGGCTACG+AGG 0.681096 4_4:-54734566 Msa0688610:CDS
GGTGTAGAGCATACAAGTAG+GGG 0.682526 4_4:+54733641 None:intergenic
CGGAGTTCCAGATCGAGGTG+AGG 0.682627 4_4:+54740240 None:intergenic
GGTTCCCGCGGATAAAGGTG+AGG 0.684975 4_4:+54735159 None:intergenic
ACAAGAAAGCACTAGCAGTG+AGG 0.686399 4_4:-54735223 Msa0688610:CDS
TCAGGATCGAGTATTTGACC+CGG 0.688455 4_4:+54740286 None:intergenic
ATACACCCTAACTCCTAGAG+AGG 0.691111 4_4:-54734896 Msa0688610:CDS
ACATTTGATGACGATATGTG+GGG 0.693273 4_4:+54734478 None:intergenic
AGAGAATCACTAGACTCAGG+CGG 0.696781 4_4:+54738402 None:intergenic
TTAACCGGAGTTCCAGATCG+AGG 0.712187 4_4:+54740235 None:intergenic
AGACAAGATGACTAAACCAG+AGG 0.726249 4_4:-54734197 Msa0688610:CDS
TGATAAACAGAAGATACATG+AGG 0.727731 4_4:-54733874 Msa0688610:three_prime_UTR
GCAACCCTTGACAACTACCG+TGG 0.734982 4_4:-54740662 Msa0688610:five_prime_UTR
GGATGTGTTGAATCCCGGCG+TGG 0.752904 4_4:-54734074 Msa0688610:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! GAAATTTTAAGAAAAAAATT+AGG - chr4_4:54735059-54735078 Msa0688610:CDS 10.0%
!!! ATTTTTGGAATATTTTTTTT+CGG + chr4_4:54738253-54738272 None:intergenic 10.0%
!! TTAAAAAATTTAAGAGTTTA+AGG - chr4_4:54738420-54738439 Msa0688610:CDS 10.0%
!! TAAACAAAATTTATTTACAA+TGG - chr4_4:54738448-54738467 Msa0688610:CDS 10.0%
!! AATTAACCAAAAATTAACAT+GGG + chr4_4:54734261-54734280 None:intergenic 15.0%
!! AAATTAACCAAAAATTAACA+TGG + chr4_4:54734262-54734281 None:intergenic 15.0%
!! AAAATATACAAACATAAACA+AGG + chr4_4:54734470-54734489 None:intergenic 15.0%
!! ATAATATTCGGTAAAATTAA+CGG + chr4_4:54735401-54735420 None:intergenic 15.0%
!! TCAAATTTACAATCTTTATA+AGG + chr4_4:54736318-54736337 None:intergenic 15.0%
!!! TTTTGCAATATTTATTGATA+AGG - chr4_4:54736452-54736471 Msa0688610:intron 15.0%
!!! ATCTATAAACTCTATTTTTA+GGG + chr4_4:54736522-54736541 None:intergenic 15.0%
!!! AATCTATAAACTCTATTTTT+AGG + chr4_4:54736523-54736542 None:intergenic 15.0%
!! ATGTATTACAAGTTAAAATA+AGG - chr4_4:54737211-54737230 Msa0688610:intron 15.0%
!! AAGCATAAATTAAACAAATT+TGG + chr4_4:54738169-54738188 None:intergenic 15.0%
!! AGATATAAGTAACAAAAATA+TGG + chr4_4:54738289-54738308 None:intergenic 15.0%
!! ACAAAATTTCAATCAGATTT+GGG + chr4_4:54733761-54733780 None:intergenic 20.0%
!! AAAACTGAATTTGAAGAAAA+GGG + chr4_4:54734112-54734131 None:intergenic 20.0%
!! AAAAACTGAATTTGAAGAAA+AGG + chr4_4:54734113-54734132 None:intergenic 20.0%
!!! ATTCAGTTTTTTTTTTGTTC+TGG - chr4_4:54734122-54734141 Msa0688610:CDS 20.0%
!!! TTCAGTTTTTTTTTTGTTCT+GGG - chr4_4:54734123-54734142 Msa0688610:CDS 20.0%
!! CATATAAACAACACAAATAA+GGG + chr4_4:54734649-54734668 None:intergenic 20.0%
!! ACATATAAACAACACAAATA+AGG + chr4_4:54734650-54734669 None:intergenic 20.0%
!!! GTATATTTTTTAACAGAGAT+TGG - chr4_4:54734781-54734800 Msa0688610:CDS 20.0%
!! AGTATTATACAATCCAAAAT+TGG + chr4_4:54735012-54735031 None:intergenic 20.0%
!! ATTGTATAATACTATTGAGA+AGG - chr4_4:54735019-54735038 Msa0688610:CDS 20.0%
!! TTGTATAATACTATTGAGAA+GGG - chr4_4:54735020-54735039 Msa0688610:CDS 20.0%
!!! ATGACTAAAAAAAACTTGTT+TGG - chr4_4:54735185-54735204 Msa0688610:CDS 20.0%
!!! TTTTTCAATTAAGATTGCAA+GGG + chr4_4:54735318-54735337 None:intergenic 20.0%
!!! TTTTTTCAATTAAGATTGCA+AGG + chr4_4:54735319-54735338 None:intergenic 20.0%
!! CTGATTGAACTTATAATATT+CGG + chr4_4:54735413-54735432 None:intergenic 20.0%
!! GTGACTAATATTAAATAAAG+AGG - chr4_4:54735729-54735748 Msa0688610:intron 20.0%
!! ATTGTAAATTAGTGAAGATT+AGG - chr4_4:54735772-54735791 Msa0688610:intron 20.0%
!! AAGAAATAAAATGAAGTGTA+AGG + chr4_4:54736177-54736196 None:intergenic 20.0%
!! AGACTAGAAATAATCATAAA+CGG + chr4_4:54736764-54736783 None:intergenic 20.0%
!!! AACTTGTAATACATTTTGTT+TGG + chr4_4:54737205-54737224 None:intergenic 20.0%
!!! TATTATACTGTGTTTTCTAA+GGG + chr4_4:54737349-54737368 None:intergenic 20.0%
!!! ATATTATACTGTGTTTTCTA+AGG + chr4_4:54737350-54737369 None:intergenic 20.0%
!!! TTCAAATTGTCTAGAATATT+AGG + chr4_4:54737389-54737408 None:intergenic 20.0%
!!! TTCAAATTGTCTAGAATATT+AGG + chr4_4:54737389-54737408 None:intergenic 20.0%
!! CTATTAAATTAAGTCATGTA+AGG + chr4_4:54737764-54737783 None:intergenic 20.0%
!! CTTACATGACTTAATTTAAT+AGG - chr4_4:54737762-54737781 Msa0688610:intron 20.0%
!! TGATCTTTCATCAAAATTAT+TGG - chr4_4:54737824-54737843 Msa0688610:intron 20.0%
!!! ATACATCAAAGCAATTTTAT+TGG - chr4_4:54737909-54737928 Msa0688610:intron 20.0%
!!! TACATCAAAGCAATTTTATT+GGG - chr4_4:54737910-54737929 Msa0688610:intron 20.0%
!! AAGTACTATATGACAATTTA+AGG + chr4_4:54738019-54738038 None:intergenic 20.0%
!!! ATTGTCATATAGTACTTTTT+TGG - chr4_4:54738022-54738041 Msa0688610:intron 20.0%
!!! TTGTCATATAGTACTTTTTT+GGG - chr4_4:54738023-54738042 Msa0688610:intron 20.0%
!!! GTTTTTCAACAATTTTTTAC+AGG - chr4_4:54738199-54738218 Msa0688610:CDS 20.0%
!! AATTCCTAACGATAAATTTA+TGG + chr4_4:54738563-54738582 None:intergenic 20.0%
!!! AAGTTAAATTGTTTTCGTAT+AGG + chr4_4:54738863-54738882 None:intergenic 20.0%
!!! AAAGAATATTCGGATTTTAA+AGG - chr4_4:54739473-54739492 Msa0688610:CDS 20.0%
!!! AAGAATATTCGGATTTTAAA+GGG - chr4_4:54739474-54739493 Msa0688610:CDS 20.0%
!! AATGGATATAAGAGATTAAA+TGG - chr4_4:54739866-54739885 Msa0688610:intron 20.0%
!!! TTTTTTTGCACTCTTTTTAA+AGG + chr4_4:54739969-54739988 None:intergenic 20.0%
!! ATTATCTTCAATAGATAAAG+AGG + chr4_4:54740029-54740048 None:intergenic 20.0%
!! TTATCTATTGAAGATAATCT+TGG - chr4_4:54740031-54740050 Msa0688610:intron 20.0%
!! AATCGTATTTAATTGATTGT+TGG - chr4_4:54740342-54740361 Msa0688610:CDS 20.0%
!!! TATGCAAAAAGCATTATTAT+TGG - chr4_4:54740497-54740516 Msa0688610:five_prime_UTR 20.0%
!! AAAATATGAGCAATTTAAGT+TGG - chr4_4:54740602-54740621 Msa0688610:five_prime_UTR 20.0%
!!! AAATATGAGCAATTTAAGTT+GGG - chr4_4:54740603-54740622 Msa0688610:five_prime_UTR 20.0%
! AAAATTTCAATCAGATTTGG+GGG + chr4_4:54733759-54733778 None:intergenic 25.0%
! CAAAATTTCAATCAGATTTG+GGG + chr4_4:54733760-54733779 None:intergenic 25.0%
! CACAAAATTTCAATCAGATT+TGG + chr4_4:54733762-54733781 None:intergenic 25.0%
!! TATGAACCCATGTTAATTTT+TGG - chr4_4:54734252-54734271 Msa0688610:CDS 25.0%
! TTGATAGATTTGAGCATATT+AGG - chr4_4:54734340-54734359 Msa0688610:CDS 25.0%
! TGATAGATTTGAGCATATTA+GGG - chr4_4:54734341-54734360 Msa0688610:CDS 25.0%
! AAAGTCAACAATCATTTCAT+TGG + chr4_4:54734392-54734411 None:intergenic 25.0%
! ATAATAGACAACACAAACAA+GGG + chr4_4:54734522-54734541 None:intergenic 25.0%
! AACATAAACAACACAAACAA+GGG + chr4_4:54734587-54734606 None:intergenic 25.0%
! AAATATACAGACACAAACAA+GGG + chr4_4:54734616-54734635 None:intergenic 25.0%
! AAAATATACAGACACAAACA+AGG + chr4_4:54734617-54734636 None:intergenic 25.0%
! TAACAGAGATTGGTATAATT+TGG - chr4_4:54734791-54734810 Msa0688610:CDS 25.0%
!! TATTTCTCTCTTTTCTTCAA+TGG + chr4_4:54734897-54734916 None:intergenic 25.0%
! CTAAGGAAACAAGATAAATT+AGG - chr4_4:54734969-54734988 Msa0688610:CDS 25.0%
!! ATTGGAAAATAGACTTTTGT+AGG - chr4_4:54735115-54735134 Msa0688610:CDS 25.0%
! ACTTATAAGCAAGATTATAG+CGG + chr4_4:54735452-54735471 None:intergenic 25.0%
!! CTTTGTTTGGTAAAAAATAG+TGG + chr4_4:54735568-54735587 None:intergenic 25.0%
! GAACATAACTTGGTATATTA+GGG + chr4_4:54735648-54735667 None:intergenic 25.0%
! AGAACATAACTTGGTATATT+AGG + chr4_4:54735649-54735668 None:intergenic 25.0%
! TGAAACTGCTTCTATTAAAT+CGG - chr4_4:54736034-54736053 Msa0688610:intron 25.0%
! ATCAGAATTATTACCTAGAT+TGG - chr4_4:54736488-54736507 Msa0688610:intron 25.0%
! TATACATACATTACGTAAAC+AGG + chr4_4:54736566-54736585 None:intergenic 25.0%
!!! TTGGTTTTGGTTTTTATTAC+TGG + chr4_4:54736990-54737009 None:intergenic 25.0%
!! TTGTCTGCAATTAAAGTTTT+AGG - chr4_4:54737238-54737257 Msa0688610:intron 25.0%
!!! GTACTTATTTTCTCTCAAAA+AGG + chr4_4:54737306-54737325 None:intergenic 25.0%
!! AAATAATGTCAAGCTTTTCA+AGG + chr4_4:54737457-54737476 None:intergenic 25.0%
! AAGCTTGACATTATTTACAA+TGG - chr4_4:54737461-54737480 Msa0688610:intron 25.0%
! GTGAGTTTGTGTTATATATT+AGG + chr4_4:54737538-54737557 None:intergenic 25.0%
!! AAATAATGTCAAGCTTTTCA+AGG + chr4_4:54737457-54737476 None:intergenic 25.0%
! TTGATCTCTATTACATTGAT+AGG + chr4_4:54737686-54737705 None:intergenic 25.0%
! AAGTAAGAACTAAACTTACA+AGG + chr4_4:54738082-54738101 None:intergenic 25.0%
! AAACAAATTTGGATTGAGTA+AGG + chr4_4:54738158-54738177 None:intergenic 25.0%
! GTGTTAAGAACGTTATTAAA+AGG - chr4_4:54738223-54738242 Msa0688610:CDS 25.0%
!!! TTTGGAATATTTTTTTTCGG+AGG + chr4_4:54738250-54738269 None:intergenic 25.0%
! TAAGATCTAAATGATGGTTA+AGG + chr4_4:54738644-54738663 None:intergenic 25.0%
!!! ACATTCTAAGATCTAAATGA+TGG + chr4_4:54738650-54738669 None:intergenic 25.0%
!! TCTTAGAATGTCTTACATTT+TGG - chr4_4:54738659-54738678 Msa0688610:intron 25.0%
!! CTTAGAATGTCTTACATTTT+GGG - chr4_4:54738660-54738679 Msa0688610:intron 25.0%
!! ATTATTTCTTTCCTGATCTA+AGG + chr4_4:54739849-54739868 None:intergenic 25.0%
! TTAGATCAGGAAAGAAATAA+TGG - chr4_4:54739848-54739867 Msa0688610:intron 25.0%
! TTCAATAGATAAAGAGGAAA+GGG + chr4_4:54740023-54740042 None:intergenic 25.0%
! GATTACTTGAGAAGATTAAT+AGG - chr4_4:54740164-54740183 Msa0688610:intron 25.0%
!! ACATTAGTAGATGCTTTTAA+AGG + chr4_4:54740193-54740212 None:intergenic 25.0%
!!! TTTAAAAGCATCTACTAATG+TGG - chr4_4:54740192-54740211 Msa0688610:intron 25.0%
! TAATAATTATCTTGCAGTGA+TGG - chr4_4:54740279-54740298 Msa0688610:CDS 25.0%
! AAATACGATTTCTATTTCGT+TGG + chr4_4:54740332-54740351 None:intergenic 25.0%
!! AATTGATTGTTGGTATTTTG+AGG - chr4_4:54740352-54740371 Msa0688610:CDS 25.0%
!!! AATATGAGCAATTTAAGTTG+GGG - chr4_4:54740604-54740623 Msa0688610:five_prime_UTR 25.0%
! TTTGGATTTGGTTAATGATG+TGG + chr4_4:54733660-54733679 None:intergenic 30.0%
ATCATTAACCAAATCCAAAC+CGG - chr4_4:54733661-54733680 Msa0688610:three_prime_UTR 30.0%
TGAAGTTTGAATCTTCTAGA+AGG + chr4_4:54733688-54733707 None:intergenic 30.0%
TACGATATAAAGCCGAATTT+CGG + chr4_4:54734299-54734318 None:intergenic 30.0%
GATAGATTTGAGCATATTAG+GGG - chr4_4:54734342-54734361 Msa0688610:CDS 30.0%
!!! TGATTGTTGACTTTTATGAG+TGG - chr4_4:54734398-54734417 Msa0688610:CDS 30.0%
AGCATAAAGAACACAAACAA+GGG + chr4_4:54734440-54734459 None:intergenic 30.0%
CATAATAGACAACACAAACA+AGG + chr4_4:54734523-54734542 None:intergenic 30.0%
CAACATAAACAACACAAACA+AGG + chr4_4:54734588-54734607 None:intergenic 30.0%
TAATGAACCAACACAAACAA+GGG + chr4_4:54734680-54734699 None:intergenic 30.0%
ATAATGAACCAACACAAACA+AGG + chr4_4:54734681-54734700 None:intergenic 30.0%
!! TAATTTGCTCTTGTTTGTGT+TGG - chr4_4:54734759-54734778 Msa0688610:CDS 30.0%
AATTTGATGCATCCATTGAA+AGG - chr4_4:54734850-54734869 Msa0688610:CDS 30.0%
ATTTGATGCATCCATTGAAA+GGG - chr4_4:54734851-54734870 Msa0688610:CDS 30.0%
! GCTTCTGATTAAACCAATTT+TGG - chr4_4:54734996-54735015 Msa0688610:CDS 30.0%
AAACAAAATCACATGCAACA+TGG - chr4_4:54735086-54735105 Msa0688610:CDS 30.0%
CATAAGTCAAAAGGCAAATT+AGG + chr4_4:54735505-54735524 None:intergenic 30.0%
! GTTTGGTAAAAAATAGTGGA+TGG + chr4_4:54735564-54735583 None:intergenic 30.0%
!!! TGTTTTGTTTTTCAGGATCT+GGG - chr4_4:54735814-54735833 Msa0688610:intron 30.0%
! GAAGACATGACTATATTTTC+AGG - chr4_4:54736092-54736111 Msa0688610:intron 30.0%
CTTTATAAGGAAAAGAAGTG+AGG + chr4_4:54736305-54736324 None:intergenic 30.0%
TCATCAGAAGAGAGTAAATA+GGG + chr4_4:54736419-54736438 None:intergenic 30.0%
TTCATCAGAAGAGAGTAAAT+AGG + chr4_4:54736420-54736439 None:intergenic 30.0%
!!! ACTCTATTTTTAGGGTACAT+TGG + chr4_4:54736514-54736533 None:intergenic 30.0%
! ACGTAAACAGGATTTTACAA+AGG + chr4_4:54736554-54736573 None:intergenic 30.0%
CAAAAATGAAAGATGCACAA+TGG + chr4_4:54736714-54736733 None:intergenic 30.0%
! AACCCATAAATACTCCTTTT+AGG - chr4_4:54736948-54736967 Msa0688610:intron 30.0%
!! AGCCTAAAAGGAGTATTTAT+GGG + chr4_4:54736953-54736972 None:intergenic 30.0%
!! TAGCCTAAAAGGAGTATTTA+TGG + chr4_4:54736954-54736973 None:intergenic 30.0%
!! TTTTATTACTGGTGGTTTGT+AGG + chr4_4:54736979-54736998 None:intergenic 30.0%
!!! GTTTTGGTTTTTATTACTGG+TGG + chr4_4:54736987-54737006 None:intergenic 30.0%
!! TTAGTAGGGTACTTTAAGAT+TGG + chr4_4:54737009-54737028 None:intergenic 30.0%
!!! CTTGAAAGGAGTTTTTAGTA+GGG + chr4_4:54737023-54737042 None:intergenic 30.0%
!!! ACTTGAAAGGAGTTTTTAGT+AGG + chr4_4:54737024-54737043 None:intergenic 30.0%
TAATACCTTGTGAACTTGAA+AGG + chr4_4:54737037-54737056 None:intergenic 30.0%
AATCTTTCAAATCTTACACG+CGG - chr4_4:54737091-54737110 Msa0688610:intron 30.0%
TGTTCTAGTCAATGTATTAG+AGG - chr4_4:54737172-54737191 Msa0688610:intron 30.0%
TCTCAAAAAGGAAAGAAATC+TGG + chr4_4:54737294-54737313 None:intergenic 30.0%
GAAAATAAGTACATAGCTAG+AGG - chr4_4:54737314-54737333 Msa0688610:intron 30.0%
TACACATAGATTGTAGAGTT+GGG + chr4_4:54737504-54737523 None:intergenic 30.0%
TTACACATAGATTGTAGAGT+TGG + chr4_4:54737505-54737524 None:intergenic 30.0%
! ACTTGAAGGTGCATTAATAT+TGG - chr4_4:54737880-54737899 Msa0688610:intron 30.0%
TTATTGGGTATGATTCTTAG+AGG - chr4_4:54737925-54737944 Msa0688610:intron 30.0%
!!! GAGTGCAGAATTTTTTTGTA+GGG + chr4_4:54738126-54738145 None:intergenic 30.0%
!!! TGAGTGCAGAATTTTTTTGT+AGG + chr4_4:54738127-54738146 None:intergenic 30.0%
! GGACGTAGAAATCAAATTTT+TGG + chr4_4:54738268-54738287 None:intergenic 30.0%
! CAAGTTTAGAACACTATGAA+AGG + chr4_4:54738386-54738405 None:intergenic 30.0%
CACATATAGATTGTAGAGTT+GGG + chr4_4:54738491-54738510 None:intergenic 30.0%
CAACTCTACAATCTATATGT+GGG - chr4_4:54738490-54738509 Msa0688610:intron 30.0%
ATAGATTCGCATTACAAGTT+AGG + chr4_4:54738536-54738555 None:intergenic 30.0%
GTGACCATAAATTTATCGTT+AGG - chr4_4:54738556-54738575 Msa0688610:intron 30.0%
AGGAATAGATTATTGACATG+TGG + chr4_4:54738610-54738629 None:intergenic 30.0%
! ATTTTCATATGCTCTCCAAA+TGG - chr4_4:54738817-54738836 Msa0688610:intron 30.0%
AATGATGTGATACAGAACTA+AGG + chr4_4:54738983-54739002 None:intergenic 30.0%
!! AACTTTTTAACTGCAGAAAC+TGG - chr4_4:54739023-54739042 Msa0688610:intron 30.0%
GTATCCAAATGGCAATTAAA+AGG - chr4_4:54739170-54739189 Msa0688610:intron 30.0%
!! CTTTCCTTTTAATTGCCATT+TGG + chr4_4:54739177-54739196 None:intergenic 30.0%
AATGGCAATTAAAAGGAAAG+AGG - chr4_4:54739177-54739196 Msa0688610:intron 30.0%
ATAACCGTAACCTTGTAAAA+AGG - chr4_4:54739201-54739220 Msa0688610:intron 30.0%
!! AGGAAAGACGTTGTTTTATA+TGG - chr4_4:54739242-54739261 Msa0688610:intron 30.0%
TTATATGGAGCAGATATTGA+AGG - chr4_4:54739257-54739276 Msa0688610:intron 30.0%
CATTTAAACCACAAGAGAAT+GGG - chr4_4:54739290-54739309 Msa0688610:intron 30.0%
ATTTAAACCACAAGAGAATG+GGG - chr4_4:54739291-54739310 Msa0688610:intron 30.0%
CTATAGTCATTTCTGTAGTA+AGG + chr4_4:54739326-54739345 None:intergenic 30.0%
AAAAAGTCAAGGTCTTGATT+GGG - chr4_4:54739418-54739437 Msa0688610:CDS 30.0%
AGTGATCCTTATCATTATGA+TGG - chr4_4:54739512-54739531 Msa0688610:intron 30.0%
GTGATCCTTATCATTATGAT+GGG - chr4_4:54739513-54739532 Msa0688610:intron 30.0%
TGATCCTTATCATTATGATG+GGG - chr4_4:54739514-54739533 Msa0688610:intron 30.0%
TGCTCGTAATAGATACAATA+GGG + chr4_4:54739604-54739623 None:intergenic 30.0%
TTGCTCGTAATAGATACAAT+AGG + chr4_4:54739605-54739624 None:intergenic 30.0%
TTAGATGGGAGTTCTATAAT+TGG - chr4_4:54739626-54739645 Msa0688610:intron 30.0%
!! AACATTTGATGACGATATGT+GGG + chr4_4:54739813-54739832 None:intergenic 30.0%
GGATATAAGAGATTAAATGG+TGG - chr4_4:54739869-54739888 Msa0688610:intron 30.0%
CTTCAATAGATAAAGAGGAA+AGG + chr4_4:54740024-54740043 None:intergenic 30.0%
TAAAAGCTTCTAGTAAGTGA+TGG + chr4_4:54740064-54740083 None:intergenic 30.0%
CTACTAAATACCAGTTTAAC+TGG + chr4_4:54740145-54740164 None:intergenic 30.0%
!! TTAGTAGATGCTTTTAAAGG+TGG + chr4_4:54740190-54740209 None:intergenic 30.0%
TGATAAACAGAAGATACATG+AGG - chr4_4:54740413-54740432 Msa0688610:five_prime_UTR 30.0%
! AGCTCTATTTGATGATTGAT+AGG - chr4_4:54740531-54740550 Msa0688610:five_prime_UTR 30.0%
! ATTGCAGAAACTCAATTTTC+TGG - chr4_4:54740699-54740718 Msa0688610:five_prime_UTR 30.0%
! TTTGAATCTTCTAGAAGGAC+CGG + chr4_4:54733683-54733702 None:intergenic 35.0%
! TGGGGGAATTGAATTTTCTA+GGG + chr4_4:54733742-54733761 None:intergenic 35.0%
! TTGGGGGAATTGAATTTTCT+AGG + chr4_4:54733743-54733762 None:intergenic 35.0%
GGAAGCGAAAAAAAGTTAAG+CGG - chr4_4:54733882-54733901 Msa0688610:three_prime_UTR 35.0%
CAGCATAAAGAACACAAACA+AGG + chr4_4:54734441-54734460 None:intergenic 35.0%
! TTGCCCTTGTTTATGTTGAT+TGG - chr4_4:54734496-54734515 Msa0688610:CDS 35.0%
CATGCAACATGGCAATATAT+TGG - chr4_4:54735097-54735116 Msa0688610:CDS 35.0%
! AATAGACTTTTGTAGGACTG+TGG - chr4_4:54735122-54735141 Msa0688610:CDS 35.0%
! ATAGACTTTTGTAGGACTGT+GGG - chr4_4:54735123-54735142 Msa0688610:CDS 35.0%
AGGAGTCTGGTAAAATATAG+CGG + chr4_4:54735485-54735504 None:intergenic 35.0%
GGATAAGCTCATAAGTCAAA+AGG + chr4_4:54735514-54735533 None:intergenic 35.0%
! AGCTAGCTTATTGCTAAGAA+CGG + chr4_4:54735535-54735554 None:intergenic 35.0%
AGAAGTCCAAAGGCAAATTA+GGG + chr4_4:54735591-54735610 None:intergenic 35.0%
!! TAGGGCTTTGAATCATAAGA+AGG + chr4_4:54735630-54735649 None:intergenic 35.0%
CCTAAGTGAAGAACATAACT+TGG + chr4_4:54735658-54735677 None:intergenic 35.0%
CCAAGTTATGTTCTTCACTT+AGG - chr4_4:54735655-54735674 Msa0688610:intron 35.0%
AGTACAGTCGAAGTTATCTT+TGG - chr4_4:54735679-54735698 Msa0688610:intron 35.0%
!!! GTGTTTTGTTTTTCAGGATC+TGG - chr4_4:54735813-54735832 Msa0688610:intron 35.0%
GGAAGATGATATTGGAACAT+GGG + chr4_4:54735931-54735950 None:intergenic 35.0%
CAATATCATCTTCCCAACTT+GGG - chr4_4:54735937-54735956 Msa0688610:intron 35.0%
AATATCATCTTCCCAACTTG+GGG - chr4_4:54735938-54735957 Msa0688610:intron 35.0%
! TTATGGAAGTTCATTTGCTG+AGG - chr4_4:54735968-54735987 Msa0688610:intron 35.0%
TACTTTCCTTGAGCTTACAT+CGG - chr4_4:54736129-54736148 Msa0688610:intron 35.0%
AATAAACCGATGTAAGCTCA+AGG + chr4_4:54736138-54736157 None:intergenic 35.0%
ATTCGTACAATAGTGCAACA+AGG + chr4_4:54736222-54736241 None:intergenic 35.0%
!! GTATCAGATGTGATTTGCTA+AGG - chr4_4:54736633-54736652 Msa0688610:intron 35.0%
TGTTCTCAGTCTAATGTCTT+GGG + chr4_4:54736659-54736678 None:intergenic 35.0%
TTGTTCTCAGTCTAATGTCT+TGG + chr4_4:54736660-54736679 None:intergenic 35.0%
AGACATTAGACTGAGAACAA+AGG - chr4_4:54736660-54736679 Msa0688610:intron 35.0%
GTTTGTAGGTTTAGCCTAAA+AGG + chr4_4:54736965-54736984 None:intergenic 35.0%
!!! GGGTACTTTAAGATTGGTTT+TGG + chr4_4:54737003-54737022 None:intergenic 35.0%
!! AAACTCCTTTCAAGTTCACA+AGG - chr4_4:54737029-54737048 Msa0688610:intron 35.0%
! TCAAGTTCACAAGGTATTAC+AGG - chr4_4:54737038-54737057 Msa0688610:intron 35.0%
!! TTTTAGGTAACAAAGTTGCG+TGG - chr4_4:54737254-54737273 Msa0688610:intron 35.0%
! TCAAGTTGTTTGTGTGGAAT+TGG + chr4_4:54737866-54737885 None:intergenic 35.0%
ATTCCACACAAACAACTTGA+AGG - chr4_4:54737866-54737885 Msa0688610:intron 35.0%
AAGGTGCATTAATATTGGTG+AGG - chr4_4:54737885-54737904 Msa0688610:intron 35.0%
AGCGAGTGAAATACTATATG+TGG - chr4_4:54737958-54737977 Msa0688610:intron 35.0%
! TACAAGGTCGCAATTTTGTA+GGG + chr4_4:54738066-54738085 None:intergenic 35.0%
! TTACAAGGTCGCAATTTTGT+AGG + chr4_4:54738067-54738086 None:intergenic 35.0%
CCACATATAGATTGTAGAGT+TGG + chr4_4:54738492-54738511 None:intergenic 35.0%
CCAACTCTACAATCTATATG+TGG - chr4_4:54738489-54738508 Msa0688610:intron 35.0%
TGTGGGTCTGAATTCATATA+TGG - chr4_4:54738507-54738526 Msa0688610:intron 35.0%
AAATGATGGTTAAGGTGAGA+GGG + chr4_4:54738636-54738655 None:intergenic 35.0%
TAAATGATGGTTAAGGTGAG+AGG + chr4_4:54738637-54738656 None:intergenic 35.0%
!! ACTGCTTAGATTGACTTGTT+TGG - chr4_4:54738745-54738764 Msa0688610:intron 35.0%
!! CTGCTTAGATTGACTTGTTT+GGG - chr4_4:54738746-54738765 Msa0688610:intron 35.0%
!! AGCTGTTTTCATAAGCCATT+TGG + chr4_4:54738835-54738854 None:intergenic 35.0%
ATTAAGCTCTTCATCCAAAC+AGG - chr4_4:54738956-54738975 Msa0688610:intron 35.0%
! CAGACCTTTTTACAAGGTTA+CGG + chr4_4:54739208-54739227 None:intergenic 35.0%
CCATTCTCTTGTGGTTTAAA+TGG + chr4_4:54739292-54739311 None:intergenic 35.0%
CCATTTAAACCACAAGAGAA+TGG - chr4_4:54739289-54739308 Msa0688610:intron 35.0%
TTTCTGTAGTAAGGATAACC+AGG + chr4_4:54739317-54739336 None:intergenic 35.0%
CAAAAAGTCAAGGTCTTGAT+TGG - chr4_4:54739417-54739436 Msa0688610:CDS 35.0%
!! GCCTGCTTTGAAAGAATATT+CGG - chr4_4:54739463-54739482 Msa0688610:CDS 35.0%
TCCGAATATTCTTTCAAAGC+AGG + chr4_4:54739467-54739486 None:intergenic 35.0%
GATCCTTATCATTATGATGG+GGG - chr4_4:54739515-54739534 Msa0688610:intron 35.0%
! ATCCTTATCATTATGATGGG+GGG - chr4_4:54739516-54739535 Msa0688610:intron 35.0%
TCTATTACGAGCAAGTTAGA+TGG - chr4_4:54739611-54739630 Msa0688610:intron 35.0%
CTATTACGAGCAAGTTAGAT+GGG - chr4_4:54739612-54739631 Msa0688610:intron 35.0%
TAAGGACTTCAATTGGGATT+GGG + chr4_4:54739655-54739674 None:intergenic 35.0%
TTAAGGACTTCAATTGGGAT+TGG + chr4_4:54739656-54739675 None:intergenic 35.0%
AATCCCAATTGAAGTCCTTA+AGG - chr4_4:54739655-54739674 Msa0688610:intron 35.0%
CATCCTTAAGGACTTCAATT+GGG + chr4_4:54739661-54739680 None:intergenic 35.0%
GACTTCAGTAATGATATGAC+TGG - chr4_4:54739713-54739732 Msa0688610:intron 35.0%
!! ACATTTGATGACGATATGTG+GGG + chr4_4:54739812-54739831 None:intergenic 35.0%
!! CAACATTTGATGACGATATG+TGG + chr4_4:54739814-54739833 None:intergenic 35.0%
AAGGACTTCTTGTCAATTGA+CGG + chr4_4:54739950-54739969 None:intergenic 35.0%
ATCAGTCTTCAGGATGAATT+GGG + chr4_4:54740397-54740416 None:intergenic 35.0%
TATCAGTCTTCAGGATGAAT+TGG + chr4_4:54740398-54740417 None:intergenic 35.0%
TCTTCTGTTTATCAGTCTTC+AGG + chr4_4:54740407-54740426 None:intergenic 35.0%
TGTGAGAATTCTACACTACA+AGG + chr4_4:54740450-54740469 None:intergenic 35.0%
!!! TCTCACATGTTGATTTTCTG+AGG - chr4_4:54740463-54740482 Msa0688610:five_prime_UTR 35.0%
GTCAAACAAGTTCTCAGTTT+CGG + chr4_4:54740670-54740689 None:intergenic 35.0%
! GGATTTGGTTAATGATGTGG+CGG + chr4_4:54733657-54733676 None:intergenic 40.0%
! GCTTTCAGTAGTGTGGATTA+GGG + chr4_4:54733785-54733804 None:intergenic 40.0%
TGCTTTCAGTAGTGTGGATT+AGG + chr4_4:54733786-54733805 None:intergenic 40.0%
TGAAACTGCTTTCAGTAGTG+TGG + chr4_4:54733792-54733811 None:intergenic 40.0%
AGCTTGATGAATTGATACGG+TGG + chr4_4:54733860-54733879 None:intergenic 40.0%
ACCGTATCAATTCATCAAGC+TGG - chr4_4:54733859-54733878 Msa0688610:three_prime_UTR 40.0%
CCCAGCTTGATGAATTGATA+CGG + chr4_4:54733863-54733882 None:intergenic 40.0%
CCGTATCAATTCATCAAGCT+GGG - chr4_4:54733860-54733879 Msa0688610:three_prime_UTR 40.0%
CGTATCAATTCATCAAGCTG+GGG - chr4_4:54733861-54733880 Msa0688610:three_prime_UTR 40.0%
AGCGAAAAAAAGTTAAGCGG+AGG - chr4_4:54733885-54733904 Msa0688610:three_prime_UTR 40.0%
GCGAAAAAAAGTTAAGCGGA+GGG - chr4_4:54733886-54733905 Msa0688610:three_prime_UTR 40.0%
CGAAAAAAAGTTAAGCGGAG+GGG - chr4_4:54733887-54733906 Msa0688610:three_prime_UTR 40.0%
! TGTGCTTAAGCTTTTCTGCA+GGG - chr4_4:54734188-54734207 Msa0688610:CDS 40.0%
TATAAAGCCGAATTTCGGTG+TGG + chr4_4:54734294-54734313 None:intergenic 40.0%
AGATTTGAGCATATTAGGGG+TGG - chr4_4:54734345-54734364 Msa0688610:CDS 40.0%
GGGCCAATCAACATAAACAA+GGG + chr4_4:54734502-54734521 None:intergenic 40.0%
AGGGCCAATCAACATAAACA+AGG + chr4_4:54734503-54734522 None:intergenic 40.0%
! TGATTTGCACTTGTTTGCGT+TGG - chr4_4:54734544-54734563 Msa0688610:CDS 40.0%
! CTTGTTTGCGTTGGTCTATT+TGG - chr4_4:54734553-54734572 Msa0688610:CDS 40.0%
! TGATTTGCCCTTGTTTGTGT+TGG - chr4_4:54734430-54734449 Msa0688610:CDS 40.0%
AAATAGACCGACGCAAACAA+GGG + chr4_4:54734736-54734755 None:intergenic 40.0%
AAAATAGACCGACGCAAACA+AGG + chr4_4:54734737-54734756 None:intergenic 40.0%
!! TGGTAAAATATAGCGGATGG+CGG + chr4_4:54735478-54735497 None:intergenic 40.0%
! GTCTGGTAAAATATAGCGGA+TGG + chr4_4:54735481-54735500 None:intergenic 40.0%
CAAAAGGCAAATTAGGAGTC+TGG + chr4_4:54735498-54735517 None:intergenic 40.0%
!! AGGCAAATTAGGGCTTTGTT+TGG + chr4_4:54735581-54735600 None:intergenic 40.0%
! ACAAAGCCCTAATTTGCCTT+TGG - chr4_4:54735582-54735601 Msa0688610:intron 40.0%
CAGAAGTCCAAAGGCAAATT+AGG + chr4_4:54735592-54735611 None:intergenic 40.0%
TTTGCCTTTGGACTTCTGAA+AGG - chr4_4:54735594-54735613 Msa0688610:intron 40.0%
! TTGCCTTTGGACTTCTGAAA+GGG - chr4_4:54735595-54735614 Msa0688610:intron 40.0%
GGCTGAAGAAAAAGTAAACG+AGG - chr4_4:54735700-54735719 Msa0688610:intron 40.0%
CCTGAAAAACAAAACACAGC+AGG + chr4_4:54735810-54735829 None:intergenic 40.0%
!!! CCTGCTGTGTTTTGTTTTTC+AGG - chr4_4:54735807-54735826 Msa0688610:intron 40.0%
!! TTTTCAGGATCTGGGCAAAT+AGG - chr4_4:54735822-54735841 Msa0688610:intron 40.0%
GGGAAGATGATATTGGAACA+TGG + chr4_4:54735932-54735951 None:intergenic 40.0%
! CCAAGTTGGGAAGATGATAT+TGG + chr4_4:54735939-54735958 None:intergenic 40.0%
CCAATATCATCTTCCCAACT+TGG - chr4_4:54735936-54735955 Msa0688610:intron 40.0%
ATAAGCATACTCCCCAAGTT+GGG + chr4_4:54735952-54735971 None:intergenic 40.0%
CGAGAATGTTGAAGGATGAA+TGG + chr4_4:54736275-54736294 None:intergenic 40.0%
GAATAGTGCGAGAATGTTGA+AGG + chr4_4:54736283-54736302 None:intergenic 40.0%
! AGTAAATAGGGAGGTATGGT+GGG + chr4_4:54736407-54736426 None:intergenic 40.0%
AGAGAGTAAATAGGGAGGTA+TGG + chr4_4:54736411-54736430 None:intergenic 40.0%
TCAGAAGAGAGTAAATAGGG+AGG + chr4_4:54736416-54736435 None:intergenic 40.0%
AGCAAGAAAACCAACAGAGA+TGG - chr4_4:54736891-54736910 Msa0688610:intron 40.0%
! TTGCTTTGTTCGAACGCTTT+CGG + chr4_4:54736929-54736948 None:intergenic 40.0%
! AAGGTATTACAGGTTGCAAC+AGG - chr4_4:54737048-54737067 Msa0688610:intron 40.0%
TTGACTAGAACATGCTGTTG+AGG + chr4_4:54737164-54737183 None:intergenic 40.0%
!! AAATTATTGGCCTTCGAACC+CGG - chr4_4:54737837-54737856 Msa0688610:intron 40.0%
GCTGAAAACAGTTACGTACA+TGG + chr4_4:54738795-54738814 None:intergenic 40.0%
TACAGAACTAAGGTCCTGTT+TGG + chr4_4:54738973-54738992 None:intergenic 40.0%
GCAATGAAGCTGTATCCAAA+TGG - chr4_4:54739159-54739178 Msa0688610:intron 40.0%
! CAGCAACAGACCTTTTTACA+AGG + chr4_4:54739214-54739233 None:intergenic 40.0%
AACATTTGATCGCTGTCATC+AGG + chr4_4:54739356-54739375 None:intergenic 40.0%
GATGACAGCGATCAAATGTT+TGG - chr4_4:54739356-54739375 Msa0688610:CDS 40.0%
! TGACTTTTTGCAACCTCTCT+AGG + chr4_4:54739407-54739426 None:intergenic 40.0%
AGAGAGGTTGCAAAAAGTCA+AGG - chr4_4:54739407-54739426 Msa0688610:CDS 40.0%
AAGGTCTTGATTGGGATGAA+TGG - chr4_4:54739426-54739445 Msa0688610:CDS 40.0%
TTCCCCCCATCATAATGATA+AGG + chr4_4:54739521-54739540 None:intergenic 40.0%
! TTATCATTATGATGGGGGGA+AGG - chr4_4:54739520-54739539 Msa0688610:intron 40.0%
! TATCATTATGATGGGGGGAA+GGG - chr4_4:54739521-54739540 Msa0688610:intron 40.0%
AGATGTAGACTTGAAGGTTC+AGG - chr4_4:54739556-54739575 Msa0688610:intron 40.0%
! ACAATAGGGACTGACTCTTT+CGG + chr4_4:54739590-54739609 None:intergenic 40.0%
CCATCCTTAAGGACTTCAAT+TGG + chr4_4:54739662-54739681 None:intergenic 40.0%
CCAATTGAAGTCCTTAAGGA+TGG - chr4_4:54739659-54739678 Msa0688610:intron 40.0%
! TAATGATATGACTGGCTACG+AGG - chr4_4:54739721-54739740 Msa0688610:intron 40.0%
! AATGATATGACTGGCTACGA+GGG - chr4_4:54739722-54739741 Msa0688610:intron 40.0%
TGAAGACTTCTCCTTAGATC+AGG - chr4_4:54739835-54739854 Msa0688610:intron 40.0%
AGACAAGATGACTAAACCAG+AGG - chr4_4:54740090-54740109 Msa0688610:intron 40.0%
AGCTTGCATACCAGTTAAAC+TGG - chr4_4:54740132-54740151 Msa0688610:intron 40.0%
AATGTGGATGTGTTGAATCC+CGG - chr4_4:54740208-54740227 Msa0688610:CDS 40.0%
TCAGTCTTCAGGATGAATTG+GGG + chr4_4:54740396-54740415 None:intergenic 40.0%
!! TAGAAGGACCGGTTTGGATT+TGG + chr4_4:54733672-54733691 None:intergenic 45.0%
! ATCTTCTAGAAGGACCGGTT+TGG + chr4_4:54733678-54733697 None:intergenic 45.0%
CGGTGAAGGAAAACGATGAA+CGG + chr4_4:54733825-54733844 None:intergenic 45.0%
! CGTTCATCGTTTTCCTTCAC+CGG - chr4_4:54733823-54733842 Msa0688610:three_prime_UTR 45.0%
AAAAAAGTTAAGCGGAGGGG+AGG - chr4_4:54733890-54733909 Msa0688610:three_prime_UTR 45.0%
AAAAAGTTAAGCGGAGGGGA+GGG - chr4_4:54733891-54733910 Msa0688610:three_prime_UTR 45.0%
TCTTCTTCGGACCCAAACAA+GGG + chr4_4:54733966-54733985 None:intergenic 45.0%
TTCTTCTTCGGACCCAAACA+AGG + chr4_4:54733967-54733986 None:intergenic 45.0%
GTTTGGGTCCGAAGAAGAAA+CGG - chr4_4:54733968-54733987 Msa0688610:three_prime_UTR 45.0%
TTTGGGTCCGAAGAAGAAAC+GGG - chr4_4:54733969-54733988 Msa0688610:three_prime_UTR 45.0%
TCAGGATCGAGTATTTGACC+CGG + chr4_4:54734004-54734023 None:intergenic 45.0%
TCTCTTCCCAGAAGCTTAAC+CGG + chr4_4:54734070-54734089 None:intergenic 45.0%
!! AGAAAAGGGCATTTACACGC+TGG + chr4_4:54734098-54734117 None:intergenic 45.0%
! CTGTGCTTAAGCTTTTCTGC+AGG - chr4_4:54734187-54734206 Msa0688610:CDS 45.0%
! TGATTTCCCCTTGTTTGCGT+CGG - chr4_4:54734726-54734745 Msa0688610:CDS 45.0%
AATAGACCGACGCAAACAAG+GGG + chr4_4:54734735-54734754 None:intergenic 45.0%
TCAAATTCGCCGCATCTGAA+CGG + chr4_4:54734837-54734856 None:intergenic 45.0%
TGATGCATCCATTGAAAGGG+CGG - chr4_4:54734854-54734873 Msa0688610:CDS 45.0%
AGCTTGAAAGGCAGATGCTA+AGG - chr4_4:54734952-54734971 Msa0688610:CDS 45.0%
CTTCCCTTTCAGAAGTCCAA+AGG + chr4_4:54735601-54735620 None:intergenic 45.0%
CACATTTGCTCCTCTTTGCT+CGG + chr4_4:54735857-54735876 None:intergenic 45.0%
AGAGAATCACTAGACTCAGG+CGG + chr4_4:54735888-54735907 None:intergenic 45.0%
TCCAGAGAATCACTAGACTC+AGG + chr4_4:54735891-54735910 None:intergenic 45.0%
CATAAGCATACTCCCCAAGT+TGG + chr4_4:54735953-54735972 None:intergenic 45.0%
! CAACTTGGGGAGTATGCTTA+TGG - chr4_4:54735951-54735970 Msa0688610:intron 45.0%
! GAGTAAATAGGGAGGTATGG+TGG + chr4_4:54736408-54736427 None:intergenic 45.0%
TAGGGTACATTGGCCAATCT+AGG + chr4_4:54736504-54736523 None:intergenic 45.0%
AGGAAACAGAGAGACAGAGA+AGG - chr4_4:54736680-54736699 Msa0688610:intron 45.0%
GCCTTTACACAAGTCGTGAA+GGG - chr4_4:54736866-54736885 Msa0688610:intron 45.0%
ACCCTTCACGACTTGTGTAA+AGG + chr4_4:54736870-54736889 None:intergenic 45.0%
CGTCATGTAACCATCTCTGT+TGG + chr4_4:54736904-54736923 None:intergenic 45.0%
TTACATTGATAGGACCCGTG+CGG + chr4_4:54737676-54737695 None:intergenic 45.0%
TAACTCACCCATGCATCTCT+CGG + chr4_4:54737802-54737821 None:intergenic 45.0%
!! AATTATTGGCCTTCGAACCC+GGG - chr4_4:54737838-54737857 Msa0688610:intron 45.0%
!! GCACCTTCAAGTTGTTTGTG+TGG + chr4_4:54737872-54737891 None:intergenic 45.0%
! ATGGTGCAACATGTTGACTG+TGG + chr4_4:54737989-54738008 None:intergenic 45.0%
TCAACATGTTGCACCATGCA+GGG - chr4_4:54737992-54738011 Msa0688610:intron 45.0%
! AACTGCAGAAACTGGTGATG+AGG - chr4_4:54739031-54739050 Msa0688610:intron 45.0%
!! ACAAGAAAGCACTAGCAGTG+AGG - chr4_4:54739064-54739083 Msa0688610:intron 45.0%
ATAAAGGTGAGGCATGTCAC+TGG + chr4_4:54739120-54739139 None:intergenic 45.0%
ATACACCCTAACTCCTAGAG+AGG - chr4_4:54739391-54739410 Msa0688610:CDS 45.0%
! TGCAACCTCTCTAGGAGTTA+GGG + chr4_4:54739399-54739418 None:intergenic 45.0%
! TTGCAACCTCTCTAGGAGTT+AGG + chr4_4:54739400-54739419 None:intergenic 45.0%
GCTGGTAGATGTAGACTTGA+AGG - chr4_4:54739550-54739569 Msa0688610:intron 45.0%
! CAATAGGGACTGACTCTTTC+GGG + chr4_4:54739589-54739608 None:intergenic 45.0%
TGTCAGTTGAGCCATCCTTA+AGG + chr4_4:54739673-54739692 None:intergenic 45.0%
! CCAATGGCTTGCATTATGAC+TGG + chr4_4:54739900-54739919 None:intergenic 45.0%
CCAGTCATAATGCAAGCCAT+TGG - chr4_4:54739897-54739916 Msa0688610:intron 45.0%
GCAAGCCATTGGAAGAAGAA+CGG - chr4_4:54739908-54739927 Msa0688610:intron 45.0%
TAAGGCCGTTCTTCTTCCAA+TGG + chr4_4:54739916-54739935 None:intergenic 45.0%
AAGAACGGCCTTAACAATGC+CGG - chr4_4:54739923-54739942 Msa0688610:intron 45.0%
ATGACTAAACCAGAGGTCTC+TGG - chr4_4:54740097-54740116 Msa0688610:intron 45.0%
TGACTAAACCAGAGGTCTCT+GGG - chr4_4:54740098-54740117 Msa0688610:intron 45.0%
GTGATGGCACAACAAATTGC+TGG - chr4_4:54740295-54740314 Msa0688610:CDS 45.0%
GGTGTAGAGCATACAAGTAG+GGG + chr4_4:54740649-54740668 None:intergenic 45.0%
CGGTGTAGAGCATACAAGTA+GGG + chr4_4:54740650-54740669 None:intergenic 45.0%
TCGGTGTAGAGCATACAAGT+AGG + chr4_4:54740651-54740670 None:intergenic 45.0%
!!! AAATTTTAAGAAAAAAATTA+GGG - chr4_4:54735060-54735079 Msa0688610:CDS 5.0%
ATGGCCACGGTAGTTGTCAA+GGG + chr4_4:54733632-54733651 None:intergenic 50.0%
! GGTTAATGATGTGGCGGAGA+TGG + chr4_4:54733651-54733670 None:intergenic 50.0%
! TCATCGTTTTCCTTCACCGG+CGG - chr4_4:54733826-54733845 Msa0688610:three_prime_UTR 50.0%
AAAAGTTAAGCGGAGGGGAG+GGG - chr4_4:54733892-54733911 Msa0688610:three_prime_UTR 50.0%
GACCCAAACAAGGGATCCAA+CGG + chr4_4:54733957-54733976 None:intergenic 50.0%
ACCACGACCCGTTTCTTCTT+CGG + chr4_4:54733979-54733998 None:intergenic 50.0%
AGGTGAGGTCAGATGAGAAG+CGG + chr4_4:54734035-54734054 None:intergenic 50.0%
TTAACCGGAGTTCCAGATCG+AGG + chr4_4:54734055-54734074 None:intergenic 50.0%
TGGAACTCCGGTTAAGCTTC+TGG - chr4_4:54734060-54734079 Msa0688610:CDS 50.0%
GGAACTCCGGTTAAGCTTCT+GGG - chr4_4:54734061-54734080 Msa0688610:CDS 50.0%
! AAAGCCGAATTTCGGTGTGG+CGG + chr4_4:54734291-54734310 None:intergenic 50.0%
CATCTGCCTTTCAAGCTCCA+GGG + chr4_4:54734949-54734968 None:intergenic 50.0%
TTTGTAGGACTGTGGGCTCT+AGG - chr4_4:54735130-54735149 Msa0688610:CDS 50.0%
GCCTGAGTCTAGTGATTCTC+TGG - chr4_4:54735887-54735906 Msa0688610:intron 50.0%
! GAGGTATGGTGGGAACTAGT+AGG + chr4_4:54736397-54736416 None:intergenic 50.0%
CGCCTTTACACAAGTCGTGA+AGG - chr4_4:54736865-54736884 Msa0688610:intron 50.0%
AAATCTTACACGCGGACTCG+TGG - chr4_4:54737099-54737118 Msa0688610:intron 50.0%
TAGTGCATCCGAGAGATGCA+TGG - chr4_4:54737791-54737810 Msa0688610:intron 50.0%
AGTGCATCCGAGAGATGCAT+GGG - chr4_4:54737792-54737811 Msa0688610:intron 50.0%
! TTTGTGTGGAATTGGTGCCC+GGG + chr4_4:54737858-54737877 None:intergenic 50.0%
! GTTTGTGTGGAATTGGTGCC+CGG + chr4_4:54737859-54737878 None:intergenic 50.0%
GTCAACATGTTGCACCATGC+AGG - chr4_4:54737991-54738010 Msa0688610:intron 50.0%
CAACATGTTGCACCATGCAG+GGG - chr4_4:54737993-54738012 Msa0688610:intron 50.0%
! GACAATTTAAGGCCCCTGCA+TGG + chr4_4:54738008-54738027 None:intergenic 50.0%
TGATGGTTAAGGTGAGAGGG+AGG + chr4_4:54738633-54738652 None:intergenic 50.0%
ACATGCCTCACCTTTATCCG+CGG - chr4_4:54739123-54739142 Msa0688610:intron 50.0%
ACAGCTTCATTGCACGTTCG+AGG + chr4_4:54739152-54739171 None:intergenic 50.0%
! GGTCTGTTGCTGCTTCTGAT+AGG - chr4_4:54739222-54739241 Msa0688610:intron 50.0%
TTGATTGGGATGAATGGCCG+TGG - chr4_4:54739432-54739451 Msa0688610:CDS 50.0%
TGATTGGGATGAATGGCCGT+GGG - chr4_4:54739433-54739452 Msa0688610:CDS 50.0%
GTAGTGTACTTCCACCAGCT+TGG - chr4_4:54739747-54739766 Msa0688610:intron 50.0%
ATGACGATATGTGGGGACGA+GGG + chr4_4:54739805-54739824 None:intergenic 50.0%
AGAACGGCCTTAACAATGCC+GGG - chr4_4:54739924-54739943 Msa0688610:intron 50.0%
CTTCTTGTCAATTGACGGCC+CGG + chr4_4:54739945-54739964 None:intergenic 50.0%
! TACGATTTTCTCTCCACGCC+GGG + chr4_4:54740229-54740248 None:intergenic 50.0%
! CTACGATTTTCTCTCCACGC+CGG + chr4_4:54740230-54740249 None:intergenic 50.0%
GCATACAAGTAGGGGACAGA+GGG + chr4_4:54740641-54740660 None:intergenic 50.0%
AGCATACAAGTAGGGGACAG+AGG + chr4_4:54740642-54740661 None:intergenic 50.0%
GCAACCCTTGACAACTACCG+TGG - chr4_4:54733625-54733644 Msa0688610:three_prime_UTR 55.0%
GATGGCCACGGTAGTTGTCA+AGG + chr4_4:54733633-54733652 None:intergenic 55.0%
GAGATGGATGGGGAGGGTTT+AGG - chr4_4:54733917-54733936 Msa0688610:three_prime_UTR 55.0%
! CGCCGTTGGATCCCTTGTTT+GGG - chr4_4:54733952-54733971 Msa0688610:three_prime_UTR 55.0%
TCCGAAGAAGAAACGGGTCG+TGG - chr4_4:54733975-54733994 Msa0688610:three_prime_UTR 55.0%
GAAGAAGAAACGGGTCGTGG+TGG - chr4_4:54733978-54733997 Msa0688610:three_prime_UTR 55.0%
TGAGAAGCGGCAAGGTCATC+AGG + chr4_4:54734022-54734041 None:intergenic 55.0%
AGGTCAGATGAGAAGCGGCA+AGG + chr4_4:54734030-54734049 None:intergenic 55.0%
CATCTGACCTCACCTCGATC+TGG - chr4_4:54734040-54734059 Msa0688610:three_prime_UTR 55.0%
! CTCACCTCGATCTGGAACTC+CGG - chr4_4:54734048-54734067 Msa0688610:exon 55.0%
CCATCCGCCACACCGAAATT+CGG - chr4_4:54734284-54734303 Msa0688610:CDS 55.0%
TCTGAACGGCTTCACTCGCT+TGG + chr4_4:54734823-54734842 None:intergenic 55.0%
CGAGTGAAGCCGTTCAGATG+CGG - chr4_4:54734825-54734844 Msa0688610:CDS 55.0%
AGCTGTCTCCGCCCTTTCAA+TGG + chr4_4:54734865-54734884 None:intergenic 55.0%
AGATGCTATTCTCCACGCCC+TGG - chr4_4:54734929-54734948 Msa0688610:CDS 55.0%
GCATCTGCCTTTCAAGCTCC+AGG + chr4_4:54734950-54734969 None:intergenic 55.0%
!! TGTGGGCTCTAGGCTCTGTT+TGG - chr4_4:54735140-54735159 Msa0688610:CDS 55.0%
TGGTTAAGGTGAGAGGGAGG+AGG + chr4_4:54738630-54738649 None:intergenic 55.0%
CATGCCTCACCTTTATCCGC+GGG - chr4_4:54739124-54739143 Msa0688610:intron 55.0%
TTCGAGGTTCCCGCGGATAA+AGG + chr4_4:54739136-54739155 None:intergenic 55.0%
AACCACAAGAGAATGGGGCC+TGG - chr4_4:54739296-54739315 Msa0688610:intron 55.0%
AACCAGGCCCCATTCTCTTG+TGG + chr4_4:54739301-54739320 None:intergenic 55.0%
AAAGCAGGCTGATCCTCCCA+CGG + chr4_4:54739452-54739471 None:intergenic 55.0%
GTGTACTTCCACCAGCTTGG+AGG - chr4_4:54739750-54739769 Msa0688610:intron 55.0%
GATGACGATATGTGGGGACG+AGG + chr4_4:54739806-54739825 None:intergenic 55.0%
TTGACGGCCCGGCATTGTTA+AGG + chr4_4:54739934-54739953 None:intergenic 55.0%
CGGCGTGGAGAGAAAATCGT+AGG - chr4_4:54740228-54740247 Msa0688610:CDS 55.0%
! TGATGTGGCGGAGATGGCCA+CGG + chr4_4:54733645-54733664 None:intergenic 60.0%
! TCGTTTTCCTTCACCGGCGG+CGG - chr4_4:54733829-54733848 Msa0688610:three_prime_UTR 60.0%
TGGGGAGGGTTTAGGTGCAG+AGG - chr4_4:54733925-54733944 Msa0688610:three_prime_UTR 60.0%
GCGCCGTTGGATCCCTTGTT+TGG - chr4_4:54733951-54733970 Msa0688610:three_prime_UTR 60.0%
AAGAAACGGGTCGTGGTGGC+CGG - chr4_4:54733982-54734001 Msa0688610:three_prime_UTR 60.0%
CGGAGTTCCAGATCGAGGTG+AGG + chr4_4:54734050-54734069 None:intergenic 60.0%
! CCGAATTTCGGTGTGGCGGA+TGG + chr4_4:54734287-54734306 None:intergenic 60.0%
TGAAAGGGCGGAGACAGCTC+TGG - chr4_4:54734866-54734885 Msa0688610:CDS 60.0%
GAAAGGGCGGAGACAGCTCT+GGG - chr4_4:54734867-54734886 Msa0688610:CDS 60.0%
TCCACGCCCTGGAGCTTGAA+AGG - chr4_4:54734940-54734959 Msa0688610:CDS 60.0%
GCGCAGCATTCCGAGCAAAG+AGG - chr4_4:54735844-54735863 Msa0688610:intron 60.0%
ACACGCGGACTCGTGGATGA+TGG - chr4_4:54737106-54737125 Msa0688610:intron 60.0%
TCTTGACCCGTGCTACCGCA+CGG - chr4_4:54737658-54737677 Msa0688610:intron 60.0%
ATAGGACCCGTGCGGTAGCA+CGG + chr4_4:54737668-54737687 None:intergenic 60.0%
! GAATTGGTGCCCGGGTTCGA+AGG + chr4_4:54737850-54737869 None:intergenic 60.0%
GGTTCCCGCGGATAAAGGTG+AGG + chr4_4:54739131-54739150 None:intergenic 60.0%
TTGCACGTTCGAGGTTCCCG+CGG + chr4_4:54739143-54739162 None:intergenic 60.0%
TTGGGATGAATGGCCGTGGG+AGG - chr4_4:54739436-54739455 Msa0688610:CDS 60.0%
TGGGGGGAAGGGATCAATGC+TGG - chr4_4:54739532-54739551 Msa0688610:intron 60.0%
GTAGTGAGCCCAGAGACCTC+TGG + chr4_4:54740109-54740128 None:intergenic 60.0%
GGATGTGTTGAATCCCGGCG+TGG - chr4_4:54740213-54740232 Msa0688610:CDS 60.0%
AAGTAGGGGACAGAGGGACG+AGG + chr4_4:54740635-54740654 None:intergenic 60.0%
AGTTAAGCGGAGGGGAGGGG+AGG - chr4_4:54733895-54733914 Msa0688610:three_prime_UTR 65.0%
AGGGGAGGGGAGGAGATGGA+TGG - chr4_4:54733905-54733924 Msa0688610:three_prime_UTR 65.0%
GGGGAGGGGAGGAGATGGAT+GGG - chr4_4:54733906-54733925 Msa0688610:three_prime_UTR 65.0%
GGGAGGGGAGGAGATGGATG+GGG - chr4_4:54733907-54733926 Msa0688610:three_prime_UTR 65.0%
AGGGGAGGAGATGGATGGGG+AGG - chr4_4:54733910-54733929 Msa0688610:three_prime_UTR 65.0%
GGGGAGGAGATGGATGGGGA+GGG - chr4_4:54733911-54733930 Msa0688610:three_prime_UTR 65.0%
GGTGCAGAGGATTGCGCCGT+TGG - chr4_4:54733938-54733957 Msa0688610:three_prime_UTR 65.0%
AGAAACGGGTCGTGGTGGCC+GGG - chr4_4:54733983-54734002 Msa0688610:three_prime_UTR 65.0%
GCCTTTCAAGCTCCAGGGCG+TGG + chr4_4:54734944-54734963 None:intergenic 65.0%
CTTGACCCGTGCTACCGCAC+GGG - chr4_4:54737659-54737678 Msa0688610:intron 65.0%
TAGGACCCGTGCGGTAGCAC+GGG + chr4_4:54737667-54737686 None:intergenic 65.0%
CTCGCAGTCCTCCAAGCTGG+TGG + chr4_4:54739761-54739780 None:intergenic 65.0%
CACCAGCTTGGAGGACTGCG+AGG - chr4_4:54739759-54739778 Msa0688610:intron 65.0%
CTCCTCGCAGTCCTCCAAGC+TGG + chr4_4:54739764-54739783 None:intergenic 65.0%
TACGGTGGCGCAACCGCCGC+CGG + chr4_4:54733845-54733864 None:intergenic 75.0%
GCGGAGGGGAGGGGAGGAGA+TGG - chr4_4:54733901-54733920 Msa0688610:three_prime_UTR 75.0%
! GGCGCAACCGCCGCCGGTGA+AGG + chr4_4:54733839-54733858 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr4_4 gene 54733587 54740722 54733587 ID=Msa0688610;Name=Msa0688610
chr4_4 mRNA 54733587 54740722 54733587 ID=Msa0688610-mRNA-1;Parent=Msa0688610;Name=Msa0688610-mRNA-1;_AED=0.09;_eAED=0.09;_QI=333|1|1|1|1|1|4|473|623
chr4_4 exon 54733587 54735270 54733587 ID=Msa0688610-mRNA-1:exon:14440;Parent=Msa0688610-mRNA-1
chr4_4 exon 54738196 54738480 54738196 ID=Msa0688610-mRNA-1:exon:14439;Parent=Msa0688610-mRNA-1
chr4_4 exon 54739319 54739512 54739319 ID=Msa0688610-mRNA-1:exon:14438;Parent=Msa0688610-mRNA-1
chr4_4 exon 54740208 54740722 54740208 ID=Msa0688610-mRNA-1:exon:14437;Parent=Msa0688610-mRNA-1
chr4_4 five_prime_UTR 54740390 54740722 54740390 ID=Msa0688610-mRNA-1:five_prime_utr;Parent=Msa0688610-mRNA-1
chr4_4 CDS 54740208 54740389 54740208 ID=Msa0688610-mRNA-1:cds;Parent=Msa0688610-mRNA-1
chr4_4 CDS 54739319 54739512 54739319 ID=Msa0688610-mRNA-1:cds;Parent=Msa0688610-mRNA-1
chr4_4 CDS 54738196 54738480 54738196 ID=Msa0688610-mRNA-1:cds;Parent=Msa0688610-mRNA-1
chr4_4 CDS 54734060 54735270 54734060 ID=Msa0688610-mRNA-1:cds;Parent=Msa0688610-mRNA-1
chr4_4 three_prime_UTR 54733587 54734059 54733587 ID=Msa0688610-mRNA-1:three_prime_utr;Parent=Msa0688610-mRNA-1
Gene Sequence

>Msa0688610

ATGGATGGGGAGGGTTTAGGTGCAGAGGATTGCGCCGTTGGATCCCTTGTTTGGGTCCGAAGAAGAAACGGGTCGTGGTGGCCGGGTCAAATACTCGATCCTGATGACCTTGCCGCTTCTCATCTGACCTCACCTCGATCTGGAACTCCGGTTAAGCTTCTGGGAAGAGAAGATGCCAGCGTAGATTGGTATAATTTGGAGAAATCCAAGCGAGTGAAGCCGTTCAGATGCGGCGAATTTGATGCATCCATTGAAAGGGCGGAGACAGCTCTGGGTATGCCATTGAAGAAAAGAGAGAAATATGCACGAAGAGAAGATGCTATTCTCCACGCCCTGGAGCTTGAAAGGCAGATGCTAAGGAAACAAGATAAATTAGGATCTGGGCAAATAGGCGCAGCATTCCGAGCAAAGAGGAGCAAATGTGTGTACTTGCCGCCTGAGTCTAGTGATTCTCTGGATTACAATGAAACTCTAGCCCATGTTCCAATATCATCTTCCCAACTTGGGGAGTATGCTTATGGAAGTTCATTTGCTGAGGAGAGCGAATCTGCTTTTCTGAATGATGTTGAATCTGATTCTTCTGAAACTGCTTCTATTAAATCGGAATCAGATTCTTCTGAAACAGAACTAGACAATGACGAAGACATGACTATATTTTCAGAAACTGGTGATGAGGACGACGAAGAACAAGAAAGCACTAGCAGTGAGGAGCATGATGAGTTAGCTGAGTTAGCAACTTCCAGTGACATGCCTCACCTTTATCCGCGGGAACCTCGAACGTGCAATGAAGCTGTATCCAAATGGCAATTAAAAGGAAAGAGGAATAACCGTAACCTTGTAAAAAGGTCTGTTGCTGCTTCTGATAGGAAAGACGTTGTTTTATATGGAGCAGATATTGAAGGACAGAGAAGCCATTTAAACCACAAGAGAATGGGGCCTGGTTATCCTTACTACAGAAATGACTATAGTGATGCTCCTGATGACAGCGATCAAATGTTTGGATCAGAAGATGAATACACCCTAACTCCTAGAGAGGTTGCAAAAAGTCAAGGTCTTGATTGGGATGAATGGCCGTGGGAGGATCAGCCTGCTTTGAAAGAATATTCGGATTTTAAAGGGTTTGCTTCATTATATAGTGATCCTTATCATTATGATGGGGGGAAGGGATCAATGCTGGTAGATGTAGACTTGAAGGTTCAGGCAAGTTACCCGAAAGAGTCAGTCCCTATTGTATCTATTACGAGCAAGTTAGATGGGAGTTCTATAATTGGACGCCCAATCCCAATTGAAGTCCTTAAGGATGGCTCAACTGACAATCTATTTTCTGCAATTGATGACTTCAGTAATGATATGACTGGCTACGAGGGAAGTAGTGTACTTCCACCAGCTTGGAGGACTGCGAGGAGAACAGCTAACTTTCGTGTCCCTCGTCCCCACATATCGTCATCAAATGTTGATGAAGACTTCTCCTTAGATCAGGAAAGAAATAATGGATATAAGAGATTAAATGGTGGAAATTCCAGTCATAATGCAAGCCATTGGAAGAAGAACGGCCTTAACAATGCCGGGCCGTCAATTGACAAGAAGTCCTTTAAAAAGAGTGCAAAAAAAGTGAGCTTGTCATCTAGTCAGAAAACTAGAACCCTTTCCTCTTTATCTATTGAAGATAATCTTGGTAGAAAACCATCACTTACTAGAAGCTTTTATCGAACAGACAAGATGACTAAACCAGAGGTCTCTGGGCTCACTACTGTAGCTTGCATACCAGTTAAACTGGTATTTAGTAGATTACTTGAGAAGATTAATAGGCCACCTTTAAAAGCATCTACTAATGTGGATGTGTTGAATCCCGGCGTGGAGAGAAAATCGTAG
Protein sequence

>Msa0688610

MDGEGLGAEDCAVGSLVWVRRRNGSWWPGQILDPDDLAASHLTSPRSGTPVKLLGREDASVDWYNLEKSKRVKPFRCGEFDASIERAETALGMPLKKREKYARREDAILHALELERQMLRKQDKLGSGQIGAAFRAKRSKCVYLPPESSDSLDYNETLAHVPISSSQLGEYAYGSSFAEESESAFLNDVESDSSETASIKSESDSSETELDNDEDMTIFSETGDEDDEEQESTSSEEHDELAELATSSDMPHLYPREPRTCNEAVSKWQLKGKRNNRNLVKRSVAASDRKDVVLYGADIEGQRSHLNHKRMGPGYPYYRNDYSDAPDDSDQMFGSEDEYTLTPREVAKSQGLDWDEWPWEDQPALKEYSDFKGFASLYSDPYHYDGGKGSMLVDVDLKVQASYPKESVPIVSITSKLDGSSIIGRPIPIEVLKDGSTDNLFSAIDDFSNDMTGYEGSSVLPPAWRTARRTANFRVPRPHISSSNVDEDFSLDQERNNGYKRLNGGNSSHNASHWKKNGLNNAGPSIDKKSFKKSAKKVSLSSSQKTRTLSSLSIEDNLGRKPSLTRSFYRTDKMTKPEVSGLTTVACIPVKLVFSRLLEKINRPPLKASTNVDVLNPGVERKS*