AlfalfaGEDB | Msa1071420

M. sativa cultivar zhongmu-4 / Msa1071420

KEGG: -
GO: -
PFAM: PF00855.20

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071420	XP_003610874.1	98.074	623	10	2	1	623	1	621	0.0	1245

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071420	sp\|P59278\|Y1745_ARATH	54.098	122	54	1	2	123	5	124	2.40e-32	135

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071420	G7K6J4	98.074	623	10	2	1	623	1	621	0.0	1245

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0029700	Msa1071420	0.832703	8.127520e-56	-8.615850e-47
Msa0080020	Msa1071420	0.840900	6.579147e-58	-8.615850e-47
Msa0124960	Msa1071420	0.843227	1.595558e-58	-8.615850e-47
Msa0154730	Msa1071420	0.847797	9.211228e-60	-8.615850e-47
Msa0238950	Msa1071420	0.805071	1.593344e-49	-8.615850e-47
Msa0308750	Msa1071420	0.806932	6.470480e-50	-8.615850e-47
Msa0316740	Msa1071420	0.805190	1.504351e-49	-8.615850e-47
Msa0481100	Msa1071420	0.813896	2.028992e-51	-8.615850e-47
Msa0615780	Msa1071420	0.810639	1.042779e-50	-8.615850e-47
Msa0655200	Msa1071420	0.815589	8.555851e-52	-8.615850e-47

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PPI

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Gene1	Gene2	Type
No data available in table

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071420	MtrunA17_Chr5g0395811	98.074	623	10	2	1	623	1	621	0.0	1245
Msa1071420	MtrunA17_Chr4g0039531	54.883	512	198	12	126	623	244	736	2.09e-158	472
Msa1071420	MtrunA17_Chr4g0039531	70.139	144	38	2	10	148	2	145	1.45e-56	204
Msa1071420	MtrunA17_Chr8g0341521	67.857	112	36	0	10	121	19	130	3.80e-41	159

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa1071420	AT3G03140.1	36.862	529	277	20	125	609	243	758	1.00e-65	230
Msa1071420	AT3G03140.1	74.400	125	32	0	1	125	1	125	6.24e-56	202
Msa1071420	AT3G21295.3	63.158	114	42	0	8	121	11	124	7.93e-40	153
Msa1071420	AT3G21295.2	60.833	120	47	0	2	121	5	124	3.17e-39	153
Msa1071420	AT3G21295.1	63.158	114	42	0	8	121	11	124	3.22e-39	153
Msa1071420	AT1G51745.1	54.098	122	54	1	2	123	5	124	3.61e-33	135

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Find 215 sgRNAs with CRISPR-Local

Find 495 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTTAAGCGGAGGGGAG+GGG	0.422206	7_2:+67930379	Msa1071420:five_prime_UTR
AAAATATGAGCAATTTAAGT+TGG	0.363830	7_2:+67937089	Msa1071420:three_prime_UTR
AAAATTTCAATCAGATTTGG+GGG	0.577680	7_2:-67930243	None:intergenic
AAAGCAGGCTGATCCTCCCA+CGG	0.647660	7_2:-67935936	None:intergenic
AAATACGATTTCTATTTCGT+TGG	0.469150	7_2:-67936816	None:intergenic
AAATATGAGCAATTTAAGTT+GGG	0.398243	7_2:+67937090	Msa1071420:three_prime_UTR
AACATTTGATCGCTGTCATC+AGG	0.436781	7_2:-67935840	None:intergenic
AACATTTGATGACGATATGT+GGG	0.517456	7_2:-67936297	None:intergenic
AACCACAAGAGAATGGGGCC+TGG	0.572020	7_2:+67935783	Msa1071420:CDS
AACCAGGCCCCATTCTCTTG+TGG	0.510552	7_2:-67935785	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
ATCATTAACCAAATCCAAAC+CGG	+	chr7_2:67930148-67930167	Msa1071420:five_prime_UTR	30.0%
TGAAGTTTGAATCTTCTAGA+AGG	-	chr7_2:67930175-67930194	None:intergenic	30.0%
TACGATATAAAGCCGAATTT+CGG	-	chr7_2:67930786-67930805	None:intergenic	30.0%
GATAGATTTGAGCATATTAG+GGG	+	chr7_2:67930829-67930848	Msa1071420:intron	30.0%
AGCATAAAGAACACAAACAA+GGG	-	chr7_2:67930927-67930946	None:intergenic	30.0%
CATAATAGACAACACAAACA+AGG	-	chr7_2:67931010-67931029	None:intergenic	30.0%
CAACATAAACAACACAAACA+AGG	-	chr7_2:67931075-67931094	None:intergenic	30.0%
TAATGAACCAACACAAACAA+GGG	-	chr7_2:67931167-67931186	None:intergenic	30.0%
ATAATGAACCAACACAAACA+AGG	-	chr7_2:67931168-67931187	None:intergenic	30.0%
AATTTGATGCATCCATTGAA+AGG	+	chr7_2:67931337-67931356	Msa1071420:CDS	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr7_2	gene	67930074	67937209	67930074	ID=Msa1071420;Name=Msa1071420
chr7_2	mRNA	67930074	67937209	67930074	ID=Msa1071420-mRNA-1;Parent=Msa1071420;Name=Msa1071420-mRNA-1;_AED=0.09;_eAED=0.09;_QI=333\|1\|1\|1\|1\|1\|4\|473\|623
chr7_2	exon	67930074	67930588	67930074	ID=Msa1071420-mRNA-1:exon:14790;Parent=Msa1071420-mRNA-1
chr7_2	exon	67931284	67931477	67931284	ID=Msa1071420-mRNA-1:exon:14791;Parent=Msa1071420-mRNA-1
chr7_2	exon	67932316	67932600	67932316	ID=Msa1071420-mRNA-1:exon:14792;Parent=Msa1071420-mRNA-1
chr7_2	exon	67935526	67937209	67935526	ID=Msa1071420-mRNA-1:exon:14793;Parent=Msa1071420-mRNA-1
chr7_2	five_prime_UTR	67930074	67930406	67930074	ID=Msa1071420-mRNA-1:five_prime_utr;Parent=Msa1071420-mRNA-1
chr7_2	CDS	67930407	67930588	67930407	ID=Msa1071420-mRNA-1:cds;Parent=Msa1071420-mRNA-1
chr7_2	CDS	67931284	67931477	67931284	ID=Msa1071420-mRNA-1:cds;Parent=Msa1071420-mRNA-1
chr7_2	CDS	67932316	67932600	67932316	ID=Msa1071420-mRNA-1:cds;Parent=Msa1071420-mRNA-1
chr7_2	CDS	67935526	67936736	67935526	ID=Msa1071420-mRNA-1:cds;Parent=Msa1071420-mRNA-1
chr7_2	three_prime_UTR	67936737	67937209	67936737	ID=Msa1071420-mRNA-1:three_prime_utr;Parent=Msa1071420-mRNA-1

Gene Sequence

>Msa1071420

ATGGATGGGGAGGGTTTAGGTGCAGAGGATTGCGCCGTTGGATCCCTTGTTTGGGTCCGAAGAAGAAACGGGTCGTGGTGGCCGGGTCAAATACTCGATCCTGATGACCTTGCCGCTTCTCATCTGACCTCACCTCGATCTGGAACTCCGGTTAAGCTTCTGGGAAGAGAAGATGCCAGCGTAGATTGGTATAATTTGGAGAAATCCAAGCGAGTGAAGCCGTTCAGATGCGGCGAATTTGATGCATCCATTGAAAGGGCGGAGACAGCTCTGGGTATGCCATTGAAGAAAAGAGAGAAATATGCACGAAGAGAAGATGCTATTCTCCACGCCCTGGAGCTTGAAAGGCAGATGCTAAGGAAACAAGATAAATTAGGATCTGGGCAAATAGGCGCAGCATTCCGAGCAAAGAGGAGCAAATGTGTGTACTTGCCGCCTGAGTCTAGTGATTCTCTGGATTACAATGAAACTCTAGCCCATGTTCCAATATCATCTTCCCAACTTGGGGAGTATGCTTATGGAAGTTCATTTGCTGAGGAGAGCGAATCTGCTTTTCTGAATGATGTTGAATCTGATTCTTCTGAAACTGCTTCTATTAAATCGGAATCAGATTCTTCTGAAACAGAACTAGACAATGACGAAGACATGACTATATTTTCAGAAACTGGTGATGAGGACGACGAAGAACAAGAAAGCACTAGCAGTGAGGAGCATGATGAGTTAGCTGAGTTAGCAACTTCCAGTGACATGCCTCACCTTTATCCGCGGGAACCTCGAACGTGCAATGAAGCTGTATCCAAATGGCAATTAAAAGGAAAGAGGAATAACCGTAACCTTGTAAAAAGGTCTGTTGCTGCTTCTGATAGGAAAGACGTTGTTTTATATGGAGCAGATATTGAAGGACAGAGAAGCCATTTAAACCACAAGAGAATGGGGCCTGGTTATCCTTACTACAGAAATGACTATAGTGATGCTCCTGATGACAGCGATCAAATGTTTGGATCAGAAGATGAATACACCCTAACTCCTAGAGAGGTTGCAAAAAGTCAAGGTCTTGATTGGGATGAATGGCCGTGGGAGGATCAGCCTGCTTTGAAAGAATATTCGGATTTTAAAGGGTTTGCTTCATTATATAGTGATCCTTATCATTATGATGGGGGGAAGGGATCAATGCTGGTAGATGTAGACTTGAAGGTTCAGGCAAGTTACCCGAAAGAGTCAGTCCCTATTGTATCTATTACGAGCAAGTTAGATGGGAGTTCTATAATTGGACGCCCAATCCCAATTGAAGTCCTTAAGGATGGCTCAACTGACAATCTATTTTCTGCAATTGATGACTTCAGTAATGATATGACTGGCTACGAGGGAAGTAGTGTACTTCCACCAGCTTGGAGGACTGCGAGGAGAACAGCTAACTTTCGTGTCCCTCGTCCCCACATATCGTCATCAAATGTTGATGAAGACTTCTCCTTAGATCAGGAAAGAAATAATGGATATAAGAGATTAAATGGTGGAAATTCCAGTCATAATGCAAGCCATTGGAAGAAGAACGGCCTTAACAATGCCGGGCCGTCAATTGACAAGAAGTCCTTTAAAAAGAGTGCAAAAAAAGTGAGCTTGTCATCTAGTCAGAAAACTAGAACCCTTTCCTCTTTATCTATTGAAGATAATCTTGGTAGAAAACCATCACTTACTAGAAGCTTTTATCGAACAGACAAGATGACTAAACCAGAGGTCTCTGGGCTCACTACTGTAGCTTGCATACCAGTTAAACTGGTATTTAGTAGATTACTTGAGAAGATTAATAGGCCACCTTTAAAAGCATCTACTAATGTGGATGTGTTGAATCCCGGCGTGGAGAGAAAATCGTAG

Protein sequence

>Msa1071420

MDGEGLGAEDCAVGSLVWVRRRNGSWWPGQILDPDDLAASHLTSPRSGTPVKLLGREDASVDWYNLEKSKRVKPFRCGEFDASIERAETALGMPLKKREKYARREDAILHALELERQMLRKQDKLGSGQIGAAFRAKRSKCVYLPPESSDSLDYNETLAHVPISSSQLGEYAYGSSFAEESESAFLNDVESDSSETASIKSESDSSETELDNDEDMTIFSETGDEDDEEQESTSSEEHDELAELATSSDMPHLYPREPRTCNEAVSKWQLKGKRNNRNLVKRSVAASDRKDVVLYGADIEGQRSHLNHKRMGPGYPYYRNDYSDAPDDSDQMFGSEDEYTLTPREVAKSQGLDWDEWPWEDQPALKEYSDFKGFASLYSDPYHYDGGKGSMLVDVDLKVQASYPKESVPIVSITSKLDGSSIIGRPIPIEVLKDGSTDNLFSAIDDFSNDMTGYEGSSVLPPAWRTARRTANFRVPRPHISSSNVDEDFSLDQERNNGYKRLNGGNSSHNASHWKKNGLNNAGPSIDKKSFKKSAKKVSLSSSQKTRTLSSLSIEDNLGRKPSLTRSFYRTDKMTKPEVSGLTTVACIPVKLVFSRLLEKINRPPLKASTNVDVLNPGVERKS*