Alfalfa Gene Editing Database
Alfalfa Gene Editing Database
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753780 | sp|Q56XX3|Y2215_ARATH | 37.657 | 239 | 47 | 5 | 34 | 180 | 95 | 323 | 1.75e-33 | 131 |
| Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753780 | A0A396GU09 | 53.237 | 278 | 28 | 4 | 3 | 181 | 97 | 371 | 1.74e-76 | 253 |
| Gene ID | Type | Classification |
|---|
| Gene ID | Type | Classification |
|---|
Co-expression Network
| Gene1 | Gene2 | correlation coefficient | p_value | FDR |
|---|---|---|---|---|
| Msa0691380 | Msa0753780 | 0.825258 | 5.171457e-54 | -8.615850e-47 |
| Msa0753780 | Msa0845400 | 0.820813 | 5.625437e-53 | -8.615850e-47 |
| Msa0753780 | Msa0925290 | 0.825922 | 3.599777e-54 | -8.615850e-47 |
| Msa0753780 | Msa0990960 | 0.802285 | 6.032332e-49 | -8.615850e-47 |
| Msa0753780 | Msa0995270 | 0.826489 | 2.638102e-54 | -8.615850e-47 |
| Msa0753780 | Msa1115430 | 0.803429 | 3.501166e-49 | -8.615850e-47 |
| Msa0753780 | Msa1162550 | -0.800146 | 1.652850e-48 | -8.615850e-47 |
| Msa0753780 | Msa1420290 | 0.806604 | 7.587562e-50 | -8.615850e-47 |
| Msa0202750 | Msa0753780 | 0.810472 | 1.133544e-50 | -8.615850e-47 |
| Msa0291540 | Msa0753780 | 0.820490 | 6.674626e-53 | -8.615850e-47 |
PPI
| Gene1 | Gene2 | Type |
|---|
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753780 | MtrunA17_Chr8g0375221 | 53.237 | 278 | 28 | 4 | 3 | 181 | 97 | 371 | 3.36e-80 | 253 |
| Msa0753780 | MtrunA17_Chr3g0087691 | 39.370 | 127 | 57 | 4 | 237 | 350 | 146 | 265 | 6.25e-17 | 82.0 |
| Msa0753780 | MtrunA17_Chr3g0144591 | 42.157 | 102 | 43 | 2 | 262 | 350 | 206 | 304 | 2.79e-16 | 80.1 |
| Msa0753780 | MtrunA17_Chr8g0384791 | 32.673 | 101 | 52 | 2 | 263 | 350 | 5 | 102 | 2.29e-12 | 67.8 |
| Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
|---|---|---|---|---|---|---|---|---|---|---|---|
| Msa0753780 | AT2G02148.5 | 37.657 | 239 | 47 | 5 | 34 | 180 | 95 | 323 | 1.77e-34 | 131 |
| Msa0753780 | AT2G02148.4 | 37.657 | 239 | 47 | 5 | 34 | 180 | 95 | 323 | 1.77e-34 | 131 |
| Msa0753780 | AT2G02148.1 | 37.657 | 239 | 47 | 5 | 34 | 180 | 95 | 323 | 1.77e-34 | 131 |
| Msa0753780 | AT2G02148.3 | 37.657 | 239 | 47 | 5 | 34 | 180 | 95 | 323 | 1.77e-34 | 131 |
| Msa0753780 | AT2G02148.2 | 37.657 | 239 | 47 | 5 | 34 | 180 | 95 | 323 | 2.91e-34 | 130 |
Find 75 sgRNAs with CRISPR-Local
Find 181 sgRNAs with CRISPR-GE
CRISPR-Local
| sgRNA_sequence | on_target_score | Position | Region |
|---|---|---|---|
| ATTAAATTCTTCACTTTAGA+TGG | 0.201008 | 5_2:-7392436 | None:intergenic |
| AAAGGGACATCTGGGAAATT+TGG | 0.226092 | 5_2:-7391159 | None:intergenic |
| CTAAAGTGAAGAATTTAATT+TGG | 0.231008 | 5_2:+7392440 | Msa0753780:CDS |
| GGTATTCACGATAAGTTTAT+TGG | 0.232054 | 5_2:+7390131 | Msa0753780:CDS |
| TGTGGCAAAACCATGCTTAA+AGG | 0.249269 | 5_2:-7391177 | None:intergenic |
| GAGGTATACATCTTTGTTTA+AGG | 0.262254 | 5_2:+7391776 | Msa0753780:intron |
| TTGGGAATTGGGATTGTATT+TGG | 0.267475 | 5_2:+7392401 | Msa0753780:CDS |
| TTTAAGGAAATAATAGTATC+TGG | 0.305604 | 5_2:+7391792 | Msa0753780:CDS |
| ACCATGCTTAAAGGGACATC+TGG | 0.312144 | 5_2:-7391168 | None:intergenic |
| GAAGGTTGATGATCTGTTAA+TGG | 0.315435 | 5_2:+7392204 | Msa0753780:CDS |
| GAAAGGTGTGGTTGGGAATT+GGG | 0.318182 | 5_2:+7392390 | Msa0753780:CDS |
| TAACAAATGATGCATATAAT+TGG | 0.318327 | 5_2:-7392165 | None:intergenic |
| TGATTTGTGAAATGAAATAT+TGG | 0.334743 | 5_2:+7392628 | Msa0753780:three_prime_UTR |
| TGAAAGGTGTGGTTGGGAAT+TGG | 0.337363 | 5_2:+7392389 | Msa0753780:CDS |
| GACTATAACCTGTTGCAAAA+TGG | 0.347886 | 5_2:+7392605 | Msa0753780:three_prime_UTR |
| TTGGGATTGTATTTGGTGTT+TGG | 0.365233 | 5_2:+7392408 | Msa0753780:CDS |
| ATTTAGCTTGCTTTGTTGAA+TGG | 0.373117 | 5_2:+7390110 | Msa0753780:intron |
| GGTTTAAAAGATTGACAGGT+TGG | 0.403575 | 5_2:+7391055 | Msa0753780:intron |
| TTGCAACAGGTTATAGTCCC+TGG | 0.415326 | 5_2:-7392600 | None:intergenic |
| GTGGCAAAACCATGCTTAAA+GGG | 0.415737 | 5_2:-7391176 | None:intergenic |
| GACGGTGGCAGCGTGATCTT+CGG | 0.432273 | 5_2:-7389683 | None:intergenic |
| TTTAGGTTTAAAAGATTGAC+AGG | 0.444883 | 5_2:+7391051 | Msa0753780:intron |
| TAGCAAATATGAAGGATTGA+AGG | 0.457968 | 5_2:+7392186 | Msa0753780:CDS |
| AATGAGAGATGGTTGCTTGC+TGG | 0.461368 | 5_2:+7392121 | Msa0753780:CDS |
| ATGAAGAAATTTCCTAAAAG+AGG | 0.466161 | 5_2:+7390194 | Msa0753780:CDS |
| TCTGTTAATGGCTGAGCAAA+AGG | 0.466466 | 5_2:+7392216 | Msa0753780:CDS |
| CACCACTCAGCGTCATCAAT+AGG | 0.471360 | 5_2:-7390516 | None:intergenic |
| CCACGCCTACGCTTGTGTCT+TGG | 0.478372 | 5_2:-7391120 | None:intergenic |
| TCTTGAAGCTGTGGGTGGAT+TGG | 0.482825 | 5_2:+7390160 | Msa0753780:CDS |
| TTGAAAATGAAAGGTGTGGT+TGG | 0.483697 | 5_2:+7392382 | Msa0753780:CDS |
| GTCGTAGAATTGTCTGCTCC+AGG | 0.485125 | 5_2:-7391501 | None:intergenic |
| ATCCTATCCTTTGTCATCGA+TGG | 0.487207 | 5_2:+7392088 | Msa0753780:CDS |
| TGGTGTTGCTCTTGAAGCTG+TGG | 0.494955 | 5_2:+7390151 | Msa0753780:CDS |
| TTCAATCAGTGCAGCATGAC+AGG | 0.495109 | 5_2:+7392272 | Msa0753780:CDS |
| GGTGTTGCTCTTGAAGCTGT+GGG | 0.496269 | 5_2:+7390152 | Msa0753780:CDS |
| TGAAAATGAAAGGTGTGGTT+GGG | 0.499852 | 5_2:+7392383 | Msa0753780:CDS |
| TCATTTGTTAGCAAATATGA+AGG | 0.500662 | 5_2:+7392178 | Msa0753780:CDS |
| TCTTTCAAACGAATTCTATG+AGG | 0.503334 | 5_2:-7392484 | None:intergenic |
| CCCAGATGTCCCTTTAAGCA+TGG | 0.515404 | 5_2:+7391167 | Msa0753780:CDS |
| GTCGATCATTTGAAAATGAA+AGG | 0.518074 | 5_2:+7392373 | Msa0753780:CDS |
| GATTTGTGAAATGAAATATT+GGG | 0.520782 | 5_2:+7392629 | Msa0753780:three_prime_UTR |
| GGCGGTGTTGATGTCGTCGA+TGG | 0.524602 | 5_2:-7389662 | None:intergenic |
| ATGTCGTCGATGGAGGTGGC+TGG | 0.532267 | 5_2:-7389652 | None:intergenic |
| AGTTAAGAACAAATGTAAAA+CGG | 0.535275 | 5_2:+7392663 | Msa0753780:three_prime_UTR |
| GATGTTTATACAGATTGTGA+TGG | 0.537591 | 5_2:+7389911 | Msa0753780:CDS |
| TGCAGCATGACAGGCACACA+TGG | 0.543298 | 5_2:+7392281 | Msa0753780:CDS |
| TAGAATTCGTTTGAAAGATG+AGG | 0.548268 | 5_2:+7392489 | Msa0753780:three_prime_UTR |
| GTTGCTCTTGAAGCTGTGGG+TGG | 0.555929 | 5_2:+7390155 | Msa0753780:CDS |
| TTTCGCAGATTGAATCAGCT+AGG | 0.566039 | 5_2:+7389886 | Msa0753780:CDS |
| TTCGCAGATTGAATCAGCTA+GGG | 0.571007 | 5_2:+7389887 | Msa0753780:CDS |
| TCGATTTCTACACTGTGAAG+TGG | 0.576052 | 5_2:-7389712 | None:intergenic |
| GTTGATGTCGTCGATGGAGG+TGG | 0.578190 | 5_2:-7389656 | None:intergenic |
| CCATGCTTAAAGGGACATCT+GGG | 0.591031 | 5_2:-7391167 | None:intergenic |
| ACATGGAAGGTGGAAAACCA+TGG | 0.596401 | 5_2:+7392298 | Msa0753780:CDS |
| TTCAAACGAATTCTATGAGG+CGG | 0.605569 | 5_2:-7392481 | None:intergenic |
| ACTGATCACTCTACGTGCAA+AGG | 0.609664 | 5_2:+7391854 | Msa0753780:CDS |
| GATGTCGATGTAATGAGAGA+TGG | 0.611625 | 5_2:+7392110 | Msa0753780:CDS |
| TGACGATCATGTGATTGAAG+TGG | 0.615105 | 5_2:+7389944 | Msa0753780:CDS |
| CCAAGACACAAGCGTAGGCG+TGG | 0.615730 | 5_2:+7391120 | Msa0753780:CDS |
| TTTGCACTGAATAATTCCCA+TGG | 0.620727 | 5_2:-7392315 | None:intergenic |
| CATGGAAGGTGGAAAACCAT+GGG | 0.622622 | 5_2:+7392299 | Msa0753780:CDS |
| ATCCATCGATGACAAAGGAT+AGG | 0.624812 | 5_2:-7392090 | None:intergenic |
| TGACAGGCACACATGGAAGG+TGG | 0.625937 | 5_2:+7392288 | Msa0753780:CDS |
| ACGACATTGACTACTACTCA+AGG | 0.626522 | 5_2:+7391519 | Msa0753780:CDS |
| GGTGTTGATGTCGTCGATGG+AGG | 0.638256 | 5_2:-7389659 | None:intergenic |
| TCGACATCCATCGATGACAA+AGG | 0.646386 | 5_2:-7392095 | None:intergenic |
| GCATGACAGGCACACATGGA+AGG | 0.651963 | 5_2:+7392285 | Msa0753780:CDS |
| CTCAGCGTCATCAATAGGTG+AGG | 0.655807 | 5_2:-7390511 | None:intergenic |
| GGTGGCAGCGTGATCTTCGG+CGG | 0.656608 | 5_2:-7389680 | None:intergenic |
| ACTGTGAAGTGGCAAACAGA+CGG | 0.664901 | 5_2:-7389701 | None:intergenic |
| CACCTATTGATGACGCTGAG+TGG | 0.674231 | 5_2:+7390514 | Msa0753780:CDS |
| TCATTTGAAAATGAAAGGTG+TGG | 0.678535 | 5_2:+7392378 | Msa0753780:CDS |
| TAATGGCTGAGCAAAAGGAG+TGG | 0.684676 | 5_2:+7392221 | Msa0753780:CDS |
| GTGAAGTGGCAAACAGACGG+TGG | 0.718305 | 5_2:-7389698 | None:intergenic |
| ACTCTCCAAGACACAAGCGT+AGG | 0.721844 | 5_2:+7391115 | Msa0753780:CDS |
CRISPR-GE
| badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
|---|---|---|---|---|---|
| !!! | ATTTCTAACAATTTTTTATA+AGG | + | chr5_2:7391693-7391712 | Msa0753780:intron | 10.0% |
| !!! | TTTTTTTTTTTTTAAGAATC+GGG | + | chr5_2:7392539-7392558 | Msa0753780:three_prime_UTR | 10.0% |
| !!! | TATATAATGTTTTATTGCTT+AGG | + | chr5_2:7390295-7390314 | Msa0753780:intron | 15.0% |
| !!! | ATATAATGTTTTATTGCTTA+GGG | + | chr5_2:7390296-7390315 | Msa0753780:intron | 15.0% |
| !!! | TGTGTTTATTTTTTATTTGA+TGG | + | chr5_2:7390549-7390568 | Msa0753780:intron | 15.0% |
| !!! | AAAATGACATAATAGAATTT+TGG | - | chr5_2:7390811-7390830 | None:intergenic | 15.0% |
| !! | AATATAAATATAATGTGCTT+TGG | + | chr5_2:7391322-7391341 | Msa0753780:intron | 15.0% |
| !! | ATGATGTATATTATACTAAA+TGG | + | chr5_2:7391380-7391399 | Msa0753780:intron | 15.0% |
| !! | TGATGTATATTATACTAAAT+GGG | + | chr5_2:7391381-7391400 | Msa0753780:intron | 15.0% |
| !! | AAAAAAAAAAACACACATAA+AGG | - | chr5_2:7392528-7392547 | None:intergenic | 15.0% |
| !! | ATATTAGCTAAATACTTCAA+AGG | - | chr5_2:7390062-7390081 | None:intergenic | 20.0% |
| !!! | ATATAAAAATGACCTCTTTT+AGG | - | chr5_2:7390209-7390228 | None:intergenic | 20.0% |
| !! | TTCGTTAAAATGTAACAAAA+GGG | - | chr5_2:7390901-7390920 | None:intergenic | 20.0% |
| !!! | ACTTGTTTGTTTTTGTTTTT+AGG | + | chr5_2:7391034-7391053 | Msa0753780:intron | 20.0% |
| !!! | ATTTATTTTGTTTAACTCAG+AGG | + | chr5_2:7391757-7391776 | Msa0753780:intron | 20.0% |
| !! | TTTAAGGAAATAATAGTATC+TGG | + | chr5_2:7391792-7391811 | Msa0753780:CDS | 20.0% |
| !! | TAACAAATGATGCATATAAT+TGG | - | chr5_2:7392168-7392187 | None:intergenic | 20.0% |
| !! | ATTAAATTCTTCACTTTAGA+TGG | - | chr5_2:7392439-7392458 | None:intergenic | 20.0% |
| !! | CTAAAGTGAAGAATTTAATT+TGG | + | chr5_2:7392440-7392459 | Msa0753780:CDS | 20.0% |
| !!! | TGATTTGTGAAATGAAATAT+TGG | + | chr5_2:7392628-7392647 | Msa0753780:three_prime_UTR | 20.0% |
| !! | GATTTGTGAAATGAAATATT+GGG | + | chr5_2:7392629-7392648 | Msa0753780:three_prime_UTR | 20.0% |
| !! | AGTTAAGAACAAATGTAAAA+CGG | + | chr5_2:7392663-7392682 | Msa0753780:three_prime_UTR | 20.0% |
| ! | ATGAAGAAATTTCCTAAAAG+AGG | + | chr5_2:7390194-7390213 | Msa0753780:CDS | 25.0% |
| ! | TACATATAAGAGAAGAGAAT+TGG | + | chr5_2:7390381-7390400 | Msa0753780:intron | 25.0% |
| ! | CAAAGAAATCCAAACAAAAA+AGG | - | chr5_2:7390675-7390694 | None:intergenic | 25.0% |
| ! | TGTTTGTAGAGATTGAAAAT+TGG | + | chr5_2:7390693-7390712 | Msa0753780:intron | 25.0% |
| !! | AAATACAAGCACTATTTCTT+AGG | - | chr5_2:7390767-7390786 | None:intergenic | 25.0% |
| !!! | GTATTTTATCTGTATTTCTG+TGG | + | chr5_2:7390781-7390800 | Msa0753780:intron | 25.0% |
| ! | CTTCGTTAAAATGTAACAAA+AGG | - | chr5_2:7390902-7390921 | None:intergenic | 25.0% |
| !!! | CTTTTGTTACATTTTAACGA+AGG | + | chr5_2:7390900-7390919 | Msa0753780:intron | 25.0% |
| !! | TTTAGGTTTAAAAGATTGAC+AGG | + | chr5_2:7391051-7391070 | Msa0753780:intron | 25.0% |
| ! | CTAGTAAAATATTTCCATAG+CGG | - | chr5_2:7391281-7391300 | None:intergenic | 25.0% |
| !! | AATATTTTACTAGCATGCAT+TGG | + | chr5_2:7391288-7391307 | Msa0753780:intron | 25.0% |
| ! | GGGATAGTAATACTATTTAA+AGG | + | chr5_2:7391401-7391420 | Msa0753780:intron | 25.0% |
| ! | CTATTTAAAGGTTGCATAAA+TGG | + | chr5_2:7391413-7391432 | Msa0753780:intron | 25.0% |
| ! | AAAGTCAACATCATAAAGTT+TGG | - | chr5_2:7391459-7391478 | None:intergenic | 25.0% |
| !!! | TTTTTGGTTTGTCATTACAT+GGG | + | chr5_2:7391644-7391663 | Msa0753780:intron | 25.0% |
| !!! | CATGCAAAAGGTATTAATTA+AGG | - | chr5_2:7392038-7392057 | None:intergenic | 25.0% |
| !! | CTTAATTAATACCTTTTGCA+TGG | + | chr5_2:7392036-7392055 | Msa0753780:intron | 25.0% |
| !! | TCATTTGTTAGCAAATATGA+AGG | + | chr5_2:7392178-7392197 | Msa0753780:CDS | 25.0% |
| !!! | ACTTGTTTTTTCAATGTGAA+GGG | + | chr5_2:7392576-7392595 | Msa0753780:three_prime_UTR | 25.0% |
| !! | AAATGTTCTAGAATATTCGC+TGG | - | chr5_2:7389761-7389780 | None:intergenic | 30.0% |
| GAATATATCTTAACCGTTGA+TGG | + | chr5_2:7389783-7389802 | Msa0753780:intron | 30.0% | |
| TTGCAAAATGTTACCATCAA+CGG | - | chr5_2:7389799-7389818 | None:intergenic | 30.0% | |
| !! | TTCAGCTTGTTAAAATGTTG+TGG | + | chr5_2:7389826-7389845 | Msa0753780:intron | 30.0% |
| GATGTTTATACAGATTGTGA+TGG | + | chr5_2:7389911-7389930 | Msa0753780:CDS | 30.0% | |
| ! | GTTGATTCAGATGTTGATTA+AGG | + | chr5_2:7389966-7389985 | Msa0753780:intron | 30.0% |
| ATCAAGATAAACTGAACAAG+AGG | + | chr5_2:7389991-7390010 | Msa0753780:intron | 30.0% | |
| TCAAGATAAACTGAACAAGA+GGG | + | chr5_2:7389992-7390011 | Msa0753780:intron | 30.0% | |
| !! | ATTTAGCTTGCTTTGTTGAA+TGG | + | chr5_2:7390110-7390129 | Msa0753780:intron | 30.0% |
| GGTATTCACGATAAGTTTAT+TGG | + | chr5_2:7390131-7390150 | Msa0753780:CDS | 30.0% | |
| !! | TGCTTTTAGCTATATAGTGT+TGG | + | chr5_2:7390251-7390270 | Msa0753780:intron | 30.0% |
| TATAACTAGTTATGGAAACC+CGG | - | chr5_2:7390428-7390447 | None:intergenic | 30.0% | |
| CCTTCTTGTATAACTAGTTA+TGG | - | chr5_2:7390436-7390455 | None:intergenic | 30.0% | |
| CCATAACTAGTTATACAAGA+AGG | + | chr5_2:7390433-7390452 | Msa0753780:intron | 30.0% | |
| !!! | TTGTTCTATCCTGTTTTGAT+TGG | + | chr5_2:7390635-7390654 | Msa0753780:intron | 30.0% |
| AAAATCTTGCCAATCAAAAC+AGG | - | chr5_2:7390647-7390666 | None:intergenic | 30.0% | |
| !! | TTTTGATTGGCAAGATTTTG+TGG | + | chr5_2:7390648-7390667 | Msa0753780:intron | 30.0% |
| ! | TTTGATTGGCAAGATTTTGT+GGG | + | chr5_2:7390649-7390668 | Msa0753780:intron | 30.0% |
| TTATTCCTAGCTACTACTAA+TGG | + | chr5_2:7390927-7390946 | Msa0753780:intron | 30.0% | |
| TATTCCTAGCTACTACTAAT+GGG | + | chr5_2:7390928-7390947 | Msa0753780:intron | 30.0% | |
| AATGACAAAATCGGTTATGA+TGG | + | chr5_2:7390954-7390973 | Msa0753780:intron | 30.0% | |
| ATGACAAAATCGGTTATGAT+GGG | + | chr5_2:7390955-7390974 | Msa0753780:intron | 30.0% | |
| !!! | TTGTTTTTACAGAGTTATCC+TGG | + | chr5_2:7391483-7391502 | Msa0753780:intron | 30.0% |
| !!! | CTTTTTGGTTTGTCATTACA+TGG | + | chr5_2:7391643-7391662 | Msa0753780:intron | 30.0% |
| ! | GAGGTATACATCTTTGTTTA+AGG | + | chr5_2:7391776-7391795 | Msa0753780:intron | 30.0% |
| CACTTGTAAAAGCTTAACTA+GGG | - | chr5_2:7391922-7391941 | None:intergenic | 30.0% | |
| ACAAAAAATCACCATGCAAA+AGG | - | chr5_2:7392050-7392069 | None:intergenic | 30.0% | |
| TAGCAAATATGAAGGATTGA+AGG | + | chr5_2:7392186-7392205 | Msa0753780:CDS | 30.0% | |
| GTCGATCATTTGAAAATGAA+AGG | + | chr5_2:7392373-7392392 | Msa0753780:CDS | 30.0% | |
| TCATTTGAAAATGAAAGGTG+TGG | + | chr5_2:7392378-7392397 | Msa0753780:CDS | 30.0% | |
| TCTTTCAAACGAATTCTATG+AGG | - | chr5_2:7392487-7392506 | None:intergenic | 30.0% | |
| TAGAATTCGTTTGAAAGATG+AGG | + | chr5_2:7392489-7392508 | Msa0753780:three_prime_UTR | 30.0% | |
| !!! | CACTTGTTTTTTCAATGTGA+AGG | + | chr5_2:7392575-7392594 | Msa0753780:three_prime_UTR | 30.0% |
| !!! | CTTGTTTTTTCAATGTGAAG+GGG | + | chr5_2:7392577-7392596 | Msa0753780:three_prime_UTR | 30.0% |
| CAAGATAAACTGAACAAGAG+GGG | + | chr5_2:7389993-7390012 | Msa0753780:intron | 35.0% | |
| AAGATAAACTGAACAAGAGG+GGG | + | chr5_2:7389994-7390013 | Msa0753780:intron | 35.0% | |
| ACAAGAGAGATTCAGTATGA+AGG | + | chr5_2:7390017-7390036 | Msa0753780:intron | 35.0% | |
| AGCTAAATACTTCAAAGGCA+AGG | - | chr5_2:7390057-7390076 | None:intergenic | 35.0% | |
| AGCTAATATGCATGAGAGTT+TGG | + | chr5_2:7390073-7390092 | Msa0753780:intron | 35.0% | |
| ! | TAGCTATATAGTGTTGGAAG+TGG | + | chr5_2:7390257-7390276 | Msa0753780:intron | 35.0% |
| GCTTAGGGTCATATATGTAT+TGG | + | chr5_2:7390311-7390330 | Msa0753780:intron | 35.0% | |
| !! | TTTTGTGGGCCTTTTTTGTT+TGG | + | chr5_2:7390663-7390682 | Msa0753780:intron | 35.0% |
| AATGGGTGCAATGACAAAAT+CGG | + | chr5_2:7390945-7390964 | Msa0753780:intron | 35.0% | |
| GATTTCAGCTAACGATTACA+AGG | + | chr5_2:7390994-7391013 | Msa0753780:intron | 35.0% | |
| AAAACAAACAAGTGAGACCA+AGG | - | chr5_2:7391027-7391046 | None:intergenic | 35.0% | |
| GGTTTAAAAGATTGACAGGT+TGG | + | chr5_2:7391055-7391074 | Msa0753780:intron | 35.0% | |
| ! | GCACTTCATTTTCCAAAATG+TGG | - | chr5_2:7391198-7391217 | None:intergenic | 35.0% |
| !! | TTTGTTAGTTTGTCATCGCA+TGG | + | chr5_2:7391583-7391602 | Msa0753780:intron | 35.0% |
| CAAACCAAAAAGTCAAACTG+CGG | - | chr5_2:7391635-7391654 | None:intergenic | 35.0% | |
| ACAAAATAAATAGACGCCGA+GGG | - | chr5_2:7391748-7391767 | None:intergenic | 35.0% | |
| AACAAAATAAATAGACGCCG+AGG | - | chr5_2:7391749-7391768 | None:intergenic | 35.0% | |
| GCACTTGTAAAAGCTTAACT+AGG | - | chr5_2:7391923-7391942 | None:intergenic | 35.0% | |
| !! | GAAGGTTGATGATCTGTTAA+TGG | + | chr5_2:7392204-7392223 | Msa0753780:CDS | 35.0% |
| TTTGCACTGAATAATTCCCA+TGG | - | chr5_2:7392318-7392337 | None:intergenic | 35.0% | |
| ! | TTGAAAATGAAAGGTGTGGT+TGG | + | chr5_2:7392382-7392401 | Msa0753780:CDS | 35.0% |
| ! | TGAAAATGAAAGGTGTGGTT+GGG | + | chr5_2:7392383-7392402 | Msa0753780:CDS | 35.0% |
| TTGGGAATTGGGATTGTATT+TGG | + | chr5_2:7392401-7392420 | Msa0753780:CDS | 35.0% | |
| !! | TTGGGATTGTATTTGGTGTT+TGG | + | chr5_2:7392408-7392427 | Msa0753780:CDS | 35.0% |
| TTCAAACGAATTCTATGAGG+CGG | - | chr5_2:7392484-7392503 | None:intergenic | 35.0% | |
| GACTATAACCTGTTGCAAAA+TGG | + | chr5_2:7392605-7392624 | Msa0753780:three_prime_UTR | 35.0% | |
| ! | ACAAATCACCATTTTGCAAC+AGG | - | chr5_2:7392616-7392635 | None:intergenic | 35.0% |
| TCGATTTCTACACTGTGAAG+TGG | - | chr5_2:7389715-7389734 | None:intergenic | 40.0% | |
| TTTCGCAGATTGAATCAGCT+AGG | + | chr5_2:7389886-7389905 | Msa0753780:CDS | 40.0% | |
| TTCGCAGATTGAATCAGCTA+GGG | + | chr5_2:7389887-7389906 | Msa0753780:CDS | 40.0% | |
| TGACGATCATGTGATTGAAG+TGG | + | chr5_2:7389944-7389963 | Msa0753780:CDS | 40.0% | |
| ATTCTATGTTGTTCCTCGAC+AGG | + | chr5_2:7390352-7390371 | Msa0753780:intron | 40.0% | |
| ATATGTACATGTTCCTGTCG+AGG | - | chr5_2:7390368-7390387 | None:intergenic | 40.0% | |
| GTTCGCTTTGTGGTAGTTAA+TGG | + | chr5_2:7390462-7390481 | Msa0753780:intron | 40.0% | |
| ! | AATCGGTTATGATGGGATAG+AGG | + | chr5_2:7390962-7390981 | Msa0753780:intron | 40.0% |
| ! | GATTACAAGGAGTACAACCT+TGG | + | chr5_2:7391007-7391026 | Msa0753780:intron | 40.0% |
| AAAGGGACATCTGGGAAATT+TGG | - | chr5_2:7391162-7391181 | None:intergenic | 40.0% | |
| GTGGCAAAACCATGCTTAAA+GGG | - | chr5_2:7391179-7391198 | None:intergenic | 40.0% | |
| TGTGGCAAAACCATGCTTAA+AGG | - | chr5_2:7391180-7391199 | None:intergenic | 40.0% | |
| !! | AGCATGGTTTTGCCACATTT+TGG | + | chr5_2:7391183-7391202 | Msa0753780:intron | 40.0% |
| ! | ATGTCTAAATTGTGCCGCTA+TGG | + | chr5_2:7391264-7391283 | Msa0753780:intron | 40.0% |
| ! | ACGACATTGACTACTACTCA+AGG | + | chr5_2:7391519-7391538 | Msa0753780:CDS | 40.0% |
| ! | TAGTTTGTCATCGCATGGAA+TGG | + | chr5_2:7391588-7391607 | Msa0753780:intron | 40.0% |
| !! | TTCACCGCAGTTTGACTTTT+TGG | + | chr5_2:7391628-7391647 | Msa0753780:intron | 40.0% |
| ! | TGGTTTGTCATTACATGGGA+TGG | + | chr5_2:7391648-7391667 | Msa0753780:intron | 40.0% |
| ATCCTATCCTTTGTCATCGA+TGG | + | chr5_2:7392088-7392107 | Msa0753780:CDS | 40.0% | |
| ATCCATCGATGACAAAGGAT+AGG | - | chr5_2:7392093-7392112 | None:intergenic | 40.0% | |
| GATGTCGATGTAATGAGAGA+TGG | + | chr5_2:7392110-7392129 | Msa0753780:CDS | 40.0% | |
| TCTGTTAATGGCTGAGCAAA+AGG | + | chr5_2:7392216-7392235 | Msa0753780:CDS | 40.0% | |
| ACTGTGAAGTGGCAAACAGA+CGG | - | chr5_2:7389704-7389723 | None:intergenic | 45.0% | |
| ! | ATATTCGCTGGTATCGAGAC+TGG | - | chr5_2:7389749-7389768 | None:intergenic | 45.0% |
| TCAAAGGCAAGGCGAAATAC+AGG | - | chr5_2:7390046-7390065 | None:intergenic | 45.0% | |
| ! | AAGCCTTATCCCACTAAGTG+CGG | - | chr5_2:7390585-7390604 | None:intergenic | 45.0% |
| AGCATAGCATTAGAGAGCTG+TGG | - | chr5_2:7390870-7390889 | None:intergenic | 45.0% | |
| TGCACCCATTAGTAGTAGCT+AGG | - | chr5_2:7390935-7390954 | None:intergenic | 45.0% | |
| CCATGCTTAAAGGGACATCT+GGG | - | chr5_2:7391170-7391189 | None:intergenic | 45.0% | |
| ACCATGCTTAAAGGGACATC+TGG | - | chr5_2:7391171-7391190 | None:intergenic | 45.0% | |
| TTTCCCAGCACAAAAACCCT+CGG | + | chr5_2:7391729-7391748 | Msa0753780:intron | 45.0% | |
| ACTGATCACTCTACGTGCAA+AGG | + | chr5_2:7391854-7391873 | Msa0753780:CDS | 45.0% | |
| CAGCAAATACTGCAGTAGAC+AGG | + | chr5_2:7391885-7391904 | Msa0753780:intron | 45.0% | |
| TCGACATCCATCGATGACAA+AGG | - | chr5_2:7392098-7392117 | None:intergenic | 45.0% | |
| AATGAGAGATGGTTGCTTGC+TGG | + | chr5_2:7392121-7392140 | Msa0753780:CDS | 45.0% | |
| TAATGGCTGAGCAAAAGGAG+TGG | + | chr5_2:7392221-7392240 | Msa0753780:CDS | 45.0% | |
| TTCAATCAGTGCAGCATGAC+AGG | + | chr5_2:7392272-7392291 | Msa0753780:CDS | 45.0% | |
| ACATGGAAGGTGGAAAACCA+TGG | + | chr5_2:7392298-7392317 | Msa0753780:CDS | 45.0% | |
| CATGGAAGGTGGAAAACCAT+GGG | + | chr5_2:7392299-7392318 | Msa0753780:CDS | 45.0% | |
| ! | TGAAAGGTGTGGTTGGGAAT+TGG | + | chr5_2:7392389-7392408 | Msa0753780:CDS | 45.0% |
| ! | GAAAGGTGTGGTTGGGAATT+GGG | + | chr5_2:7392390-7392409 | Msa0753780:CDS | 45.0% |
| !! | TTTTTCAATGTGAAGGGGCC+AGG | + | chr5_2:7392582-7392601 | Msa0753780:three_prime_UTR | 45.0% |
| ! | TTTTCAATGTGAAGGGGCCA+GGG | + | chr5_2:7392583-7392602 | Msa0753780:three_prime_UTR | 45.0% |
| TTGCAACAGGTTATAGTCCC+TGG | - | chr5_2:7392603-7392622 | None:intergenic | 45.0% | |
| !!! | ATTTTTATTTAATTTCTTTA+AGG | - | chr5_2:7391945-7391964 | None:intergenic | 5.0% |
| !!! | TTTTTTTTTTTTTTAAGAAT+CGG | + | chr5_2:7392538-7392557 | Msa0753780:three_prime_UTR | 5.0% |
| !! | TGGTGTTGCTCTTGAAGCTG+TGG | + | chr5_2:7390151-7390170 | Msa0753780:CDS | 50.0% |
| !! | GGTGTTGCTCTTGAAGCTGT+GGG | + | chr5_2:7390152-7390171 | Msa0753780:CDS | 50.0% |
| TCTTGAAGCTGTGGGTGGAT+TGG | + | chr5_2:7390160-7390179 | Msa0753780:CDS | 50.0% | |
| TGGCAACTTCAACTGAGACG+AGG | + | chr5_2:7390401-7390420 | Msa0753780:intron | 50.0% | |
| ACTTCAACTGAGACGAGGAC+CGG | + | chr5_2:7390406-7390425 | Msa0753780:intron | 50.0% | |
| ! | AAGGAAGCGTGTTCGCTTTG+TGG | + | chr5_2:7390452-7390471 | Msa0753780:intron | 50.0% |
| CTCAGCGTCATCAATAGGTG+AGG | - | chr5_2:7390514-7390533 | None:intergenic | 50.0% | |
| !! | CACCTATTGATGACGCTGAG+TGG | + | chr5_2:7390514-7390533 | Msa0753780:CDS | 50.0% |
| CACCACTCAGCGTCATCAAT+AGG | - | chr5_2:7390519-7390538 | None:intergenic | 50.0% | |
| CTTATCCCACTAAGTGCGGT+CGG | - | chr5_2:7390581-7390600 | None:intergenic | 50.0% | |
| GCACTTAGTGGGATAAGGCT+TGG | + | chr5_2:7390584-7390603 | Msa0753780:intron | 50.0% | |
| ACTCTCCAAGACACAAGCGT+AGG | + | chr5_2:7391115-7391134 | Msa0753780:CDS | 50.0% | |
| CCCAGATGTCCCTTTAAGCA+TGG | + | chr5_2:7391167-7391186 | Msa0753780:CDS | 50.0% | |
| GTCGTAGAATTGTCTGCTCC+AGG | - | chr5_2:7391504-7391523 | None:intergenic | 50.0% | |
| GTTGATGTCGTCGATGGAGG+TGG | - | chr5_2:7389659-7389678 | None:intergenic | 55.0% | |
| !! | GGTGTTGATGTCGTCGATGG+AGG | - | chr5_2:7389662-7389681 | None:intergenic | 55.0% |
| GTGAAGTGGCAAACAGACGG+TGG | - | chr5_2:7389701-7389720 | None:intergenic | 55.0% | |
| GTTGCTCTTGAAGCTGTGGG+TGG | + | chr5_2:7390155-7390174 | Msa0753780:CDS | 55.0% | |
| CTTCAACTGAGACGAGGACC+GGG | + | chr5_2:7390407-7390426 | Msa0753780:intron | 55.0% | |
| ATGTAGCCGACCGCACTTAG+TGG | + | chr5_2:7390572-7390591 | Msa0753780:intron | 55.0% | |
| TGTAGCCGACCGCACTTAGT+GGG | + | chr5_2:7390573-7390592 | Msa0753780:intron | 55.0% | |
| CGACCGCACTTAGTGGGATA+AGG | + | chr5_2:7390579-7390598 | Msa0753780:intron | 55.0% | |
| ! | ACGCCGAGGGTTTTTGTGCT+GGG | - | chr5_2:7391735-7391754 | None:intergenic | 55.0% |
| TGCAGCATGACAGGCACACA+TGG | + | chr5_2:7392281-7392300 | Msa0753780:CDS | 55.0% | |
| GCATGACAGGCACACATGGA+AGG | + | chr5_2:7392285-7392304 | Msa0753780:CDS | 55.0% | |
| TGACAGGCACACATGGAAGG+TGG | + | chr5_2:7392288-7392307 | Msa0753780:CDS | 55.0% | |
| ATGTCGTCGATGGAGGTGGC+TGG | - | chr5_2:7389655-7389674 | None:intergenic | 60.0% | |
| !! | GGCGGTGTTGATGTCGTCGA+TGG | - | chr5_2:7389665-7389684 | None:intergenic | 60.0% |
| GACGGTGGCAGCGTGATCTT+CGG | - | chr5_2:7389686-7389705 | None:intergenic | 60.0% | |
| CCACGCCTACGCTTGTGTCT+TGG | - | chr5_2:7391123-7391142 | None:intergenic | 60.0% | |
| CCAAGACACAAGCGTAGGCG+TGG | + | chr5_2:7391120-7391139 | Msa0753780:CDS | 60.0% | |
| ! | GACGCCGAGGGTTTTTGTGC+TGG | - | chr5_2:7391736-7391755 | None:intergenic | 60.0% |
| GGTGGCAGCGTGATCTTCGG+CGG | - | chr5_2:7389683-7389702 | None:intergenic | 65.0% |
| Chromosome | Type | Strat | End | Strand | Name |
|---|---|---|---|---|---|
| chr5_2 | gene | 7389649 | 7392714 | 7389649 | ID=Msa0753780;Name=Msa0753780 |
| chr5_2 | mRNA | 7389649 | 7392714 | 7389649 | ID=Msa0753780-mRNA-1;Parent=Msa0753780;Name=Msa0753780-mRNA-1;_AED=0.39;_eAED=0.45;_QI=0|0.14|0.25|1|1|1|8|249|350 |
| chr5_2 | exon | 7389649 | 7389748 | 7389649 | ID=Msa0753780-mRNA-1:exon:3332;Parent=Msa0753780-mRNA-1 |
| chr5_2 | exon | 7389883 | 7389977 | 7389883 | ID=Msa0753780-mRNA-1:exon:3333;Parent=Msa0753780-mRNA-1 |
| chr5_2 | exon | 7390116 | 7390215 | 7390116 | ID=Msa0753780-mRNA-1:exon:3334;Parent=Msa0753780-mRNA-1 |
| chr5_2 | exon | 7390478 | 7390535 | 7390478 | ID=Msa0753780-mRNA-1:exon:3335;Parent=Msa0753780-mRNA-1 |
| chr5_2 | exon | 7391056 | 7391188 | 7391056 | ID=Msa0753780-mRNA-1:exon:3336;Parent=Msa0753780-mRNA-1 |
| chr5_2 | exon | 7391495 | 7391551 | 7391495 | ID=Msa0753780-mRNA-1:exon:3337;Parent=Msa0753780-mRNA-1 |
| chr5_2 | exon | 7391777 | 7391898 | 7391777 | ID=Msa0753780-mRNA-1:exon:3338;Parent=Msa0753780-mRNA-1 |
| chr5_2 | exon | 7392078 | 7392714 | 7392078 | ID=Msa0753780-mRNA-1:exon:3339;Parent=Msa0753780-mRNA-1 |
| chr5_2 | CDS | 7389649 | 7389748 | 7389649 | ID=Msa0753780-mRNA-1:cds;Parent=Msa0753780-mRNA-1 |
| chr5_2 | CDS | 7389883 | 7389977 | 7389883 | ID=Msa0753780-mRNA-1:cds;Parent=Msa0753780-mRNA-1 |
| chr5_2 | CDS | 7390116 | 7390215 | 7390116 | ID=Msa0753780-mRNA-1:cds;Parent=Msa0753780-mRNA-1 |
| chr5_2 | CDS | 7390478 | 7390535 | 7390478 | ID=Msa0753780-mRNA-1:cds;Parent=Msa0753780-mRNA-1 |
| chr5_2 | CDS | 7391056 | 7391188 | 7391056 | ID=Msa0753780-mRNA-1:cds;Parent=Msa0753780-mRNA-1 |
| chr5_2 | CDS | 7391495 | 7391551 | 7391495 | ID=Msa0753780-mRNA-1:cds;Parent=Msa0753780-mRNA-1 |
| chr5_2 | CDS | 7391777 | 7391898 | 7391777 | ID=Msa0753780-mRNA-1:cds;Parent=Msa0753780-mRNA-1 |
| chr5_2 | CDS | 7392078 | 7392465 | 7392078 | ID=Msa0753780-mRNA-1:cds;Parent=Msa0753780-mRNA-1 |
| chr5_2 | three_prime_UTR | 7392466 | 7392714 | 7392466 | ID=Msa0753780-mRNA-1:three_prime_utr;Parent=Msa0753780-mRNA-1 |
| Gene Sequence |
| Protein sequence |
