Alfalfa Gene Editing Database
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995270 | TKY45006.1 | 77.519 | 129 | 27 | 1 | 4 | 130 | 1 | 129 | 1.41e-66 | 207 |
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Query id | Subject id | identity % | alignment length | mis matches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995270 | A0A445D4R6 | 75.573 | 131 | 30 | 1 | 2 | 130 | 17 | 147 | 3.28e-66 | 206 |
Gene ID | Type | Classification |
---|
Gene ID | Type | Classification |
---|
Co-expression Network
Gene1 | Gene2 | correlation coefficient | p_value | FDR |
---|---|---|---|---|
Msa0006070 | Msa0995270 | 0.822845 | 1.905125e-53 | -8.615850e-47 |
Msa0012080 | Msa0995270 | 0.821944 | 3.084502e-53 | -8.615850e-47 |
Msa0017510 | Msa0995270 | 0.855517 | 5.982846e-62 | -8.615850e-47 |
Msa0028640 | Msa0995270 | 0.831313 | 1.791477e-55 | -8.615850e-47 |
Msa0037700 | Msa0995270 | 0.810745 | 9.895187e-51 | -8.615850e-47 |
Msa0054480 | Msa0995270 | 0.804445 | 2.152664e-49 | -8.615850e-47 |
Msa0089630 | Msa0995270 | 0.800919 | 1.149790e-48 | -8.615850e-47 |
Msa0091210 | Msa0995270 | -0.813518 | 2.458001e-51 | -8.615850e-47 |
Msa0114060 | Msa0995270 | 0.801012 | 1.100601e-48 | -8.615850e-47 |
Msa0606860 | Msa0995270 | 0.804268 | 2.344131e-49 | -8.615850e-47 |
Msa0608620 | Msa0995270 | 0.828025 | 1.130358e-54 | -8.615850e-47 |
Msa0610430 | Msa0995270 | 0.813970 | 1.954658e-51 | -8.615850e-47 |
Msa0625720 | Msa0995270 | 0.821789 | 3.349515e-53 | -8.615850e-47 |
Msa0648880 | Msa0995270 | 0.816231 | 6.152434e-52 | -8.615850e-47 |
Msa0657610 | Msa0995270 | 0.827582 | 1.444742e-54 | -8.615850e-47 |
Msa0657970 | Msa0995270 | 0.826710 | 2.336576e-54 | -8.615850e-47 |
Msa0661190 | Msa0995270 | -0.803338 | 3.656042e-49 | -8.615850e-47 |
Msa0661650 | Msa0995270 | 0.809557 | 1.783729e-50 | -8.615850e-47 |
Msa0663390 | Msa0995270 | 0.804923 | 1.711341e-49 | -8.615850e-47 |
Msa0669320 | Msa0995270 | 0.818505 | 1.892333e-52 | -8.615850e-47 |
Msa0673460 | Msa0995270 | 0.826792 | 2.233215e-54 | -8.615850e-47 |
Msa0678600 | Msa0995270 | 0.819331 | 1.228341e-52 | -8.615850e-47 |
Msa0681270 | Msa0995270 | 0.810567 | 1.081028e-50 | -8.615850e-47 |
Msa0682840 | Msa0995270 | 0.803695 | 3.083042e-49 | -8.615850e-47 |
Msa0683510 | Msa0995270 | 0.800981 | 1.116859e-48 | -8.615850e-47 |
Msa0691380 | Msa0995270 | 0.852174 | 5.489663e-61 | -8.615850e-47 |
Msa0715700 | Msa0995270 | 0.824071 | 9.844555e-54 | -8.615850e-47 |
Msa0724210 | Msa0995270 | 0.805365 | 1.382823e-49 | -8.615850e-47 |
Msa0731940 | Msa0995270 | 0.815391 | 9.468211e-52 | -8.615850e-47 |
Msa0743720 | Msa0995270 | 0.833318 | 5.714660e-56 | -8.615850e-47 |
Msa0745790 | Msa0995270 | 0.818168 | 2.256815e-52 | -8.615850e-47 |
Msa0749290 | Msa0995270 | 0.800473 | 1.417861e-48 | -8.615850e-47 |
Msa0753780 | Msa0995270 | 0.826489 | 2.638102e-54 | -8.615850e-47 |
Msa0769390 | Msa0995270 | 0.809536 | 1.802806e-50 | -8.615850e-47 |
Msa0793800 | Msa0995270 | 0.814691 | 1.354130e-51 | -8.615850e-47 |
Msa0806090 | Msa0995270 | 0.809542 | 1.797118e-50 | -8.615850e-47 |
Msa0824680 | Msa0995270 | 0.809116 | 2.217906e-50 | -8.615850e-47 |
Msa0827040 | Msa0995270 | 0.803840 | 2.877012e-49 | -8.615850e-47 |
Msa0832370 | Msa0995270 | 0.834453 | 2.971304e-56 | -8.615850e-47 |
Msa0133130 | Msa0995270 | 0.808422 | 3.122229e-50 | -8.615850e-47 |
Msa0136070 | Msa0995270 | 0.802394 | 5.727953e-49 | -8.615850e-47 |
Msa0139060 | Msa0995270 | 0.804984 | 1.661495e-49 | -8.615850e-47 |
Msa0145440 | Msa0995270 | 0.820505 | 6.619692e-53 | -8.615850e-47 |
Msa0150820 | Msa0995270 | 0.807439 | 5.052832e-50 | -8.615850e-47 |
Msa0157290 | Msa0995270 | 0.855707 | 5.264442e-62 | -8.615850e-47 |
Msa0160550 | Msa0995270 | 0.819801 | 9.594877e-53 | -8.615850e-47 |
Msa0166560 | Msa0995270 | 0.800597 | 1.337648e-48 | -8.615850e-47 |
Msa0188830 | Msa0995270 | 0.808800 | 2.592066e-50 | -8.615850e-47 |
Msa0200260 | Msa0995270 | 0.819040 | 1.430843e-52 | -8.615850e-47 |
Msa0215320 | Msa0995270 | -0.816869 | 4.426003e-52 | -8.615850e-47 |
Msa0220740 | Msa0995270 | 0.839202 | 1.824768e-57 | -8.615850e-47 |
Msa0222890 | Msa0995270 | 0.803662 | 3.132245e-49 | -8.615850e-47 |
Msa0237070 | Msa0995270 | 0.809359 | 1.967951e-50 | -8.615850e-47 |
Msa0380740 | Msa0995270 | 0.811767 | 5.939333e-51 | -8.615850e-47 |
Msa0397750 | Msa0995270 | 0.834139 | 3.561284e-56 | -8.615850e-47 |
Msa0398710 | Msa0995270 | 0.804910 | 1.722029e-49 | -8.615850e-47 |
Msa0437990 | Msa0995270 | 0.824477 | 7.903951e-54 | -8.615850e-47 |
Msa0440750 | Msa0995270 | 0.804193 | 2.429804e-49 | -8.615850e-47 |
Msa0467060 | Msa0995270 | 0.801754 | 7.756700e-49 | -8.615850e-47 |
Msa0480980 | Msa0995270 | 0.808637 | 2.808392e-50 | -8.615850e-47 |
Msa0990960 | Msa0995270 | 0.817174 | 3.780406e-52 | -8.615850e-47 |
Msa0993290 | Msa0995270 | 0.817477 | 3.231297e-52 | -8.615850e-47 |
Msa0993600 | Msa0995270 | 0.823765 | 1.161022e-53 | -8.615850e-47 |
Msa0995270 | Msa0998690 | 0.804971 | 1.671644e-49 | -8.615850e-47 |
Msa0995270 | Msa1003620 | 0.800200 | 1.611195e-48 | -8.615850e-47 |
Msa0995270 | Msa1014540 | 0.845624 | 3.616202e-59 | -8.615850e-47 |
Msa0995270 | Msa1030970 | 0.811367 | 7.254155e-51 | -8.615850e-47 |
Msa0995270 | Msa1061680 | 0.807981 | 3.875439e-50 | -8.615850e-47 |
Msa0995270 | Msa1075540 | 0.801126 | 1.042861e-48 | -8.615850e-47 |
Msa0995270 | Msa1079180 | 0.827951 | 1.178144e-54 | -8.615850e-47 |
Msa0995270 | Msa1079590 | 0.812335 | 4.465604e-51 | -8.615850e-47 |
Msa0995270 | Msa1082500 | 0.814981 | 1.168096e-51 | -8.615850e-47 |
Msa0995270 | Msa1089020 | 0.806554 | 7.774542e-50 | -8.615850e-47 |
Msa0995270 | Msa1115430 | 0.819449 | 1.154844e-52 | -8.615850e-47 |
Msa0995270 | Msa1162550 | -0.808866 | 2.509025e-50 | -8.615850e-47 |
Msa0995270 | Msa1163820 | 0.829301 | 5.558468e-55 | -8.615850e-47 |
Msa0995270 | Msa1169000 | 0.811352 | 7.309174e-51 | -8.615850e-47 |
Msa0995270 | Msa1169090 | 0.816792 | 4.606693e-52 | -8.615850e-47 |
Msa0995270 | Msa1186060 | 0.829541 | 4.858818e-55 | -8.615850e-47 |
Msa0995270 | Msa1199220 | 0.833435 | 5.343343e-56 | -8.615850e-47 |
Msa0995270 | Msa1204090 | 0.811167 | 8.018087e-51 | -8.615850e-47 |
Msa0995270 | Msa1205130 | 0.819473 | 1.140317e-52 | -8.615850e-47 |
Msa0995270 | Msa1222970 | 0.807031 | 6.165218e-50 | -8.615850e-47 |
Msa0995270 | Msa1228210 | 0.812406 | 4.308517e-51 | -8.615850e-47 |
Msa0995270 | Msa1238930 | 0.813510 | 2.468089e-51 | -8.615850e-47 |
Msa0995270 | Msa1242220 | 0.806709 | 7.211089e-50 | -8.615850e-47 |
Msa0995270 | Msa1242230 | 0.806236 | 9.073317e-50 | -8.615850e-47 |
Msa0995270 | Msa1242240 | 0.801835 | 7.462996e-49 | -8.615850e-47 |
Msa0995270 | Msa1244250 | 0.808800 | 2.592573e-50 | -8.615850e-47 |
Msa0995270 | Msa1250890 | 0.814778 | 1.295394e-51 | -8.615850e-47 |
Msa0995270 | Msa1252140 | 0.804315 | 2.291976e-49 | -8.615850e-47 |
Msa0995270 | Msa1253020 | 0.819961 | 8.820180e-53 | -8.615850e-47 |
Msa0995270 | Msa1271290 | 0.827342 | 1.649910e-54 | -8.615850e-47 |
Msa0995270 | Msa1271300 | 0.805434 | 1.337318e-49 | -8.615850e-47 |
Msa0995270 | Msa1277660 | 0.806442 | 8.210359e-50 | -8.615850e-47 |
Msa0995270 | Msa1278840 | 0.813219 | 2.858691e-51 | -8.615850e-47 |
Msa0995270 | Msa1283840 | 0.800387 | 1.476372e-48 | -8.615850e-47 |
Msa0995270 | Msa1283860 | 0.829036 | 6.442866e-55 | -8.615850e-47 |
Msa0995270 | Msa1284680 | 0.806531 | 7.861375e-50 | -8.615850e-47 |
Msa0995270 | Msa1287460 | 0.804082 | 2.562815e-49 | -8.615850e-47 |
Msa0995270 | Msa1295850 | 0.802545 | 5.331542e-49 | -8.615850e-47 |
Msa0995270 | Msa1308380 | 0.836365 | 9.765004e-57 | -8.615850e-47 |
Msa0995270 | Msa1320410 | 0.800990 | 1.111897e-48 | -8.615850e-47 |
Msa0995270 | Msa1322860 | 0.819786 | 9.673198e-53 | -8.615850e-47 |
Msa0995270 | Msa1322890 | 0.802734 | 4.875528e-49 | -8.615850e-47 |
Msa0995270 | Msa1327050 | 0.805102 | 1.569656e-49 | -8.615850e-47 |
Msa0995270 | Msa1327680 | 0.842128 | 3.123335e-58 | -8.615850e-47 |
Msa0995270 | Msa1359040 | 0.804869 | 1.755707e-49 | -8.615850e-47 |
Msa0995270 | Msa1367080 | 0.804995 | 1.652383e-49 | -8.615850e-47 |
Msa0995270 | Msa1386780 | 0.817087 | 3.955655e-52 | -8.615850e-47 |
Msa0995270 | Msa1392260 | 0.806899 | 6.574941e-50 | -8.615850e-47 |
Msa0995270 | Msa1416150 | 0.802123 | 6.513217e-49 | -8.615850e-47 |
Msa0995270 | Msa1429150 | 0.830459 | 2.901562e-55 | -8.615850e-47 |
Msa0995270 | Msa1429900 | 0.806734 | 7.124622e-50 | -8.615850e-47 |
Msa0995270 | Msa1445610 | -0.808739 | 2.670363e-50 | -8.615850e-47 |
Msa0995270 | Msa1452240 | 0.828710 | 7.726777e-55 | -8.615850e-47 |
Msa0995270 | Msa1466540 | 0.820645 | 6.148935e-53 | -8.615850e-47 |
Msa0241640 | Msa0995270 | 0.800410 | 1.460399e-48 | -8.615850e-47 |
Msa0243100 | Msa0995270 | 0.820900 | 5.372400e-53 | -8.615850e-47 |
Msa0243890 | Msa0995270 | 0.811550 | 6.618431e-51 | -8.615850e-47 |
Msa0261340 | Msa0995270 | 0.823625 | 1.252579e-53 | -8.615850e-47 |
Msa0264040 | Msa0995270 | 0.806510 | 7.942472e-50 | -8.615850e-47 |
Msa0279700 | Msa0995270 | 0.835962 | 1.235887e-56 | -8.615850e-47 |
Msa0279790 | Msa0995270 | 0.802830 | 4.656364e-49 | -8.615850e-47 |
Msa0287650 | Msa0995270 | 0.800542 | 1.372429e-48 | -8.615850e-47 |
Msa0291540 | Msa0995270 | 0.832604 | 8.598951e-56 | -8.615850e-47 |
Msa0336420 | Msa0995270 | 0.816272 | 6.024315e-52 | -8.615850e-47 |
Msa0337620 | Msa0995270 | 0.817961 | 2.513367e-52 | -8.615850e-47 |
Msa0339320 | Msa0995270 | 0.803472 | 3.430431e-49 | -8.615850e-47 |
Msa0340450 | Msa0995270 | 0.815105 | 1.096160e-51 | -8.615850e-47 |
Msa0345970 | Msa0995270 | 0.800820 | 1.204302e-48 | -8.615850e-47 |
Msa0357340 | Msa0995270 | 0.809150 | 2.181191e-50 | -8.615850e-47 |
Msa0490390 | Msa0995270 | 0.805654 | 1.202668e-49 | -8.615850e-47 |
Msa0492930 | Msa0995270 | 0.804282 | 2.327619e-49 | -8.615850e-47 |
Msa0500360 | Msa0995270 | 0.812469 | 4.174099e-51 | -8.615850e-47 |
Msa0529890 | Msa0995270 | 0.822820 | 1.930587e-53 | -8.615850e-47 |
Msa0547320 | Msa0995270 | 0.812583 | 3.940254e-51 | -8.615850e-47 |
Msa0555020 | Msa0995270 | 0.833587 | 4.896391e-56 | -8.615850e-47 |
Msa0569500 | Msa0995270 | 0.804260 | 2.352603e-49 | -8.615850e-47 |
Msa0581760 | Msa0995270 | 0.800644 | 1.308637e-48 | -8.615850e-47 |
Msa0585560 | Msa0995270 | 0.806838 | 6.771307e-50 | -8.615850e-47 |
Msa0597330 | Msa0995270 | 0.833404 | 5.437431e-56 | -8.615850e-47 |
Msa0601850 | Msa0995270 | 0.815416 | 9.351354e-52 | -8.615850e-47 |
Msa0843260 | Msa0995270 | 0.805014 | 1.637698e-49 | -8.615850e-47 |
Msa0845400 | Msa0995270 | 0.814197 | 1.741827e-51 | -8.615850e-47 |
Msa0867890 | Msa0995270 | 0.802348 | 5.853529e-49 | -8.615850e-47 |
Msa0871270 | Msa0995270 | 0.813978 | 1.946353e-51 | -8.615850e-47 |
Msa0880140 | Msa0995270 | 0.855897 | 4.633936e-62 | -8.615850e-47 |
Msa0884670 | Msa0995270 | 0.811151 | 8.081268e-51 | -8.615850e-47 |
Msa0894390 | Msa0995270 | 0.802888 | 4.530928e-49 | -8.615850e-47 |
Msa0920870 | Msa0995270 | 0.805230 | 1.475593e-49 | -8.615850e-47 |
Msa0938220 | Msa0995270 | 0.817771 | 2.773680e-52 | -8.615850e-47 |
Msa0947660 | Msa0995270 | 0.810741 | 9.911369e-51 | -8.615850e-47 |
Msa0959360 | Msa0995270 | 0.876196 | 1.691515e-68 | -8.615850e-47 |
Msa0963190 | Msa0995270 | 0.811231 | 7.764986e-51 | -8.615850e-47 |
Msa0965490 | Msa0995270 | 0.806188 | 9.285832e-50 | -8.615850e-47 |
Msa0968680 | Msa0995270 | 0.811374 | 7.227589e-51 | -8.615850e-47 |
Msa0974070 | Msa0995270 | 0.810195 | 1.300777e-50 | -8.615850e-47 |
PPI
Gene1 | Gene2 | Type |
---|
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|---|---|---|---|---|---|---|---|---|---|---|
Msa0995270 | MtrunA17_Chr1g0188491 | 72.800 | 125 | 29 | 2 | 4 | 125 | 1 | 123 | 3.10e-60 | 181 |
Msa0995270 | MtrunA17_Chr6g0477141 | 98.795 | 83 | 1 | 0 | 4 | 86 | 1 | 83 | 3.13e-50 | 166 |
Msa0995270 | MtrunA17_Chr5g0405761 | 51.429 | 105 | 48 | 2 | 28 | 130 | 223 | 326 | 1.27e-29 | 108 |
Msa0995270 | MtrunA17_Chr1g0156481 | 50.562 | 89 | 42 | 2 | 44 | 131 | 215 | 302 | 2.38e-22 | 89.4 |
Query id | Subject id | identity % | alignment length | mismatches | gap openings | q. start | q. end | s. start | s. end | e-value | bit score |
---|
Find 130 sgRNAs with CRISPR-Local
Find 249 sgRNAs with CRISPR-GE
CRISPR-Local
sgRNA_sequence | on_target_score | Position | Region |
---|---|---|---|
TTGACGACTTCTTGAATAAA+TGG | 0.143416 | 6_4:+71222986 | Msa0995270:three_prime_UTR |
CTAGCACTGTTGAGAATTTC+TGG | 0.157165 | 6_4:-71221890 | None:intergenic |
AACAACTCCTTTGCATTTCT+TGG | 0.218146 | 6_4:-71222655 | None:intergenic |
CTTCTGTATTTAAGTATTCT+TGG | 0.218368 | 6_4:-71222567 | None:intergenic |
GACTGGTTATTCAGTAGTTT+AGG | 0.261552 | 6_4:+71222847 | Msa0995270:three_prime_UTR |
CACCGACTCACGGGTGTTAA+AGG | 0.267503 | 6_4:+71222212 | Msa0995270:three_prime_UTR |
ACCCAGGAGATGTAGATTTA+TGG | 0.275561 | 6_4:+71221565 | Msa0995270:three_prime_UTR |
CCACCATTTGATTTGATGTT+AGG | 0.275789 | 6_4:+71223120 | Msa0995270:three_prime_UTR |
ATGAAAACCTCCCGGGCATT+AGG | 0.298800 | 6_4:-71221090 | None:intergenic |
ATCATTCAGACCTTGAAATA+TGG | 0.304552 | 6_4:-71221920 | None:intergenic |
AATGAGAATGCAACCTGTTC+TGG | 0.328101 | 6_4:-71222937 | None:intergenic |
TGAACGTAATAGAGTGATTC+AGG | 0.333897 | 6_4:+71221757 | Msa0995270:three_prime_UTR |
GATGATGAGGATGGTTCTTC+AGG | 0.349700 | 6_4:+71220799 | Msa0995270:CDS |
CTATTATTTCAGGATTGTAT+AGG | 0.362544 | 6_4:+71222036 | Msa0995270:intron |
ACTGGTTATTCAGTAGTTTA+GGG | 0.364419 | 6_4:+71222848 | Msa0995270:three_prime_UTR |
TGTATAGGCTCTGCATATAA+TGG | 0.366344 | 6_4:+71223170 | Msa0995270:three_prime_UTR |
GCAAATTCCTGCACATGTTC+CGG | 0.367277 | 6_4:+71222074 | Msa0995270:three_prime_UTR |
AAGAGGGGCCGAAAAGCTTC+TGG | 0.377408 | 6_4:+71220892 | Msa0995270:CDS |
CAAAGGAGTTGTTCAATCAT+AGG | 0.383328 | 6_4:+71222665 | Msa0995270:three_prime_UTR |
GAACTCGTTGCGGCTGCTGC+TGG | 0.386586 | 6_4:+71221494 | Msa0995270:three_prime_UTR |
TGCCATAAATCTACATCTCC+TGG | 0.393953 | 6_4:-71221567 | None:intergenic |
CAGCTAGTGGTGGTCGGAAG+AGG | 0.397609 | 6_4:+71220875 | Msa0995270:CDS |
GCGAAATCGAGATTGATCTT+TGG | 0.398795 | 6_4:-71222097 | None:intergenic |
TGATTGGTTACTCAATTTGC+GGG | 0.399694 | 6_4:+71223048 | Msa0995270:three_prime_UTR |
ACCAGTCATTTCTTTCTTCA+CGG | 0.401217 | 6_4:-71222831 | None:intergenic |
ATTTGTGGGAAATTCTGATC+TGG | 0.404418 | 6_4:-71222249 | None:intergenic |
CTGCATCATGGCATCCACTA+TGG | 0.407457 | 6_4:-71220920 | None:intergenic |
TGAAAACCTCCCGGGCATTA+GGG | 0.410829 | 6_4:-71221089 | None:intergenic |
TATTTCTTCAATACCAGAAC+AGG | 0.414037 | 6_4:+71222924 | Msa0995270:three_prime_UTR |
TATCACGTAACATGGCTCTT+TGG | 0.418711 | 6_4:-71221676 | None:intergenic |
TACCAACCTTATGAGTTTAG+AGG | 0.421610 | 6_4:+71222619 | Msa0995270:three_prime_UTR |
AGTGAGATTGTGAGGAATCT+TGG | 0.424457 | 6_4:+71223211 | Msa0995270:three_prime_UTR |
GATATGTCATTGTCATTGAT+TGG | 0.432072 | 6_4:+71223032 | Msa0995270:three_prime_UTR |
TGACGACTTCTTGAATAAAT+GGG | 0.432370 | 6_4:+71222987 | Msa0995270:three_prime_UTR |
TGAGGAGCAAGTTTCATGAT+TGG | 0.432849 | 6_4:-71222745 | None:intergenic |
TTGATTGGTTACTCAATTTG+CGG | 0.437069 | 6_4:+71223047 | Msa0995270:three_prime_UTR |
TCAGGAGCGGTTTCAGCACT+CGG | 0.439358 | 6_4:+71221775 | Msa0995270:three_prime_UTR |
AACGAACCTTGAGGAATTTG+TGG | 0.440004 | 6_4:-71222264 | None:intergenic |
TCAATACATTATTAAAATGT+CGG | 0.443527 | 6_4:-71221811 | None:intergenic |
GAAGAAATAAATTGAACATC+GGG | 0.447295 | 6_4:-71222910 | None:intergenic |
AGCTAGTGGTGGTCGGAAGA+GGG | 0.455554 | 6_4:+71220876 | Msa0995270:CDS |
ATTTGCGGGTTTGTTGCAAA+TGG | 0.459079 | 6_4:+71223062 | Msa0995270:three_prime_UTR |
GCCATGTTACGTGATACTTC+TGG | 0.460394 | 6_4:+71221683 | Msa0995270:three_prime_UTR |
TCACTCTATTACGTTCACTA+TGG | 0.463287 | 6_4:-71221751 | None:intergenic |
GGGTGATATTGACATGGAAT+TGG | 0.463892 | 6_4:+71221463 | Msa0995270:three_prime_UTR |
TCTGGTGATGTTGTATCCTC+AGG | 0.466979 | 6_4:-71221872 | None:intergenic |
GAGGAGCAAGTTTCATGATT+GGG | 0.469428 | 6_4:-71222744 | None:intergenic |
TGAACATCGGGAAGTTCGTC+AGG | 0.474711 | 6_4:-71222898 | None:intergenic |
TGACCTAACATCAAATCAAA+TGG | 0.482391 | 6_4:-71223123 | None:intergenic |
CTCTTCCGACCACCACTAGC+TGG | 0.483214 | 6_4:-71220874 | None:intergenic |
GTGAGATTGTGAGGAATCTT+GGG | 0.487272 | 6_4:+71223212 | Msa0995270:three_prime_UTR |
TCTTTGGCCGGAACATGTGC+AGG | 0.489674 | 6_4:-71222081 | None:intergenic |
ATCTGAGAAATACTATCTTA+AGG | 0.491213 | 6_4:+71222695 | Msa0995270:three_prime_UTR |
GAGGATGGTTCTTCAGGCTC+AGG | 0.500473 | 6_4:+71220805 | Msa0995270:CDS |
TTCTCAAACGATTCAAATGG+AGG | 0.501825 | 6_4:-71221166 | None:intergenic |
ACGAACCTTGAGGAATTTGT+GGG | 0.504423 | 6_4:-71222263 | None:intergenic |
TTGAGAATCACCCTAATGCC+CGG | 0.506051 | 6_4:+71221079 | Msa0995270:CDS |
TGACATGGAATTGGATGAGA+TGG | 0.507251 | 6_4:+71221472 | Msa0995270:three_prime_UTR |
GATGCAAGGTCTTGATGAAA+GGG | 0.513593 | 6_4:+71221032 | Msa0995270:CDS |
TTTGTGGGAAATTCTGATCT+GGG | 0.513968 | 6_4:-71222248 | None:intergenic |
AAAATATAAATTGATTAACA+TGG | 0.516373 | 6_4:-71221303 | None:intergenic |
TTAGCACCTCTAAACTCATA+AGG | 0.519230 | 6_4:-71222625 | None:intergenic |
TGGTACCGAACCCCTTGAAA+AGG | 0.519547 | 6_4:-71222601 | None:intergenic |
GTTTGAAAACAGAGGTATGT+TGG | 0.523389 | 6_4:-71221338 | None:intergenic |
TCTCGATTTCGCAATAAGAA+AGG | 0.526197 | 6_4:+71222108 | Msa0995270:three_prime_UTR |
CACGTAACATGGCTCTTTGG+CGG | 0.527673 | 6_4:-71221673 | None:intergenic |
ACTCCTTTGCATTTCTTGGT+AGG | 0.527692 | 6_4:-71222651 | None:intergenic |
TACAGATACACCAATCAGCA+TGG | 0.529586 | 6_4:+71221442 | Msa0995270:three_prime_UTR |
AAATATAAATTGATTAACAT+GGG | 0.530026 | 6_4:-71221302 | None:intergenic |
AGATGCAAGGTCTTGATGAA+AGG | 0.540422 | 6_4:+71221031 | Msa0995270:CDS |
AATTCTGATCTGGGTCATCA+AGG | 0.542424 | 6_4:-71222239 | None:intergenic |
AAGGTTCTGTCACCGACTCA+CGG | 0.543196 | 6_4:+71222202 | Msa0995270:three_prime_UTR |
AATGGGACGAGTGGTGATGC+TGG | 0.543414 | 6_4:+71223004 | Msa0995270:three_prime_UTR |
AATCGAGATTGATCTTTGGC+CGG | 0.545496 | 6_4:-71222093 | None:intergenic |
GATTGTATAGGAGTAATTGA+TGG | 0.547687 | 6_4:+71222048 | Msa0995270:three_prime_UTR |
TCAATATCACCCATGCTGAT+TGG | 0.548167 | 6_4:-71221452 | None:intergenic |
TAATAGAGATGAAAACCTCC+CGG | 0.550139 | 6_4:-71221098 | None:intergenic |
AGGTTCTGTCACCGACTCAC+GGG | 0.562802 | 6_4:+71222203 | Msa0995270:three_prime_UTR |
CAAGCTAGTGTTCCAGCTAG+TGG | 0.563625 | 6_4:+71220862 | Msa0995270:CDS |
GCCATAAATCTACATCTCCT+GGG | 0.564209 | 6_4:-71221566 | None:intergenic |
AAAAGAATGCCATGGTTGCA+GGG | 0.565002 | 6_4:+71221129 | Msa0995270:CDS |
AGCAGCTGCTATCTGCATCA+TGG | 0.570810 | 6_4:-71220932 | None:intergenic |
AGCTTCTGGTGATGCCATAG+TGG | 0.573165 | 6_4:+71220906 | Msa0995270:CDS |
CAAGAATACTTAAATACAGA+AGG | 0.573953 | 6_4:+71222568 | Msa0995270:three_prime_UTR |
TTTATGGCAGAAGTGCTGAA+TGG | 0.575064 | 6_4:+71221581 | Msa0995270:three_prime_UTR |
AATAGAGATGAAAACCTCCC+GGG | 0.577351 | 6_4:-71221097 | None:intergenic |
TGAAGAAATAAATTGAACAT+CGG | 0.577543 | 6_4:-71222911 | None:intergenic |
AAGCAAGTGCATCAATGTGT+TGG | 0.578048 | 6_4:+71221005 | Msa0995270:CDS |
CAGGAGCGGTTTCAGCACTC+GGG | 0.579751 | 6_4:+71221776 | Msa0995270:three_prime_UTR |
GTGACAGAACCTTCCCAACC+AGG | 0.582402 | 6_4:-71222192 | None:intergenic |
AAATGCAATTATGAAGAATG+AGG | 0.583203 | 6_4:+71220969 | Msa0995270:CDS |
CTTCCCGTGGTTTATCACCC+AGG | 0.584887 | 6_4:+71221549 | Msa0995270:three_prime_UTR |
GCTAGTGGTGGTCGGAAGAG+GGG | 0.585645 | 6_4:+71220877 | Msa0995270:CDS |
ATGGCTTTCGATGATGAGGA+TGG | 0.589950 | 6_4:+71220790 | Msa0995270:CDS |
CAGCATGGGTGATATTGACA+TGG | 0.591176 | 6_4:+71221457 | Msa0995270:three_prime_UTR |
TATAGTTAACTAGACTGCAA+AGG | 0.591431 | 6_4:+71221234 | Msa0995270:three_prime_UTR |
TGAGAATCACCCTAATGCCC+GGG | 0.591855 | 6_4:+71221080 | Msa0995270:CDS |
CTGGTTATTCAGTAGTTTAG+GGG | 0.592004 | 6_4:+71222849 | Msa0995270:three_prime_UTR |
CACCTCTAAACTCATAAGGT+TGG | 0.594202 | 6_4:-71222621 | None:intergenic |
TGGTTATTCAGTAGTTTAGG+GGG | 0.599818 | 6_4:+71222850 | Msa0995270:three_prime_UTR |
AATTTCCCACAAATTCCTCA+AGG | 0.601774 | 6_4:+71222258 | Msa0995270:three_prime_UTR |
ACAGATACACCAATCAGCAT+GGG | 0.605365 | 6_4:+71221443 | Msa0995270:three_prime_UTR |
TGCCTTTAACACCCGTGAGT+CGG | 0.605648 | 6_4:-71222214 | None:intergenic |
TTAAGTATTCTTGGTCAACA+AGG | 0.607070 | 6_4:-71222558 | None:intergenic |
TTGTCGTGAAATGTTGCGGA+TGG | 0.607611 | 6_4:+71221616 | Msa0995270:three_prime_UTR |
TCACCTACCAAGAAATGCAA+AGG | 0.607831 | 6_4:+71222648 | Msa0995270:three_prime_UTR |
GTGTTCCAGCTAGTGGTGGT+CGG | 0.615184 | 6_4:+71220869 | Msa0995270:CDS |
ATCTCCTGGGTGATAAACCA+CGG | 0.621943 | 6_4:-71221553 | None:intergenic |
TGCAAATGATTGAATCACAC+AGG | 0.624451 | 6_4:-71223085 | None:intergenic |
ACCAGAAGTATCACGTAACA+TGG | 0.625814 | 6_4:-71221684 | None:intergenic |
CCTAACATCAAATCAAATGG+TGG | 0.627956 | 6_4:-71223120 | None:intergenic |
GATGATGCGAACATGTTAGA+CGG | 0.630185 | 6_4:+71220829 | Msa0995270:CDS |
GGTGATGTTGTATCCTCAGG+AGG | 0.631551 | 6_4:-71221869 | None:intergenic |
CTAACAAAACAGCCTTCCCG+TGG | 0.634429 | 6_4:+71221536 | Msa0995270:three_prime_UTR |
CAAATCTAGTTTGAAAACAG+AGG | 0.642281 | 6_4:-71221346 | None:intergenic |
CAGTCTAGTTAACTATACAA+AGG | 0.642885 | 6_4:-71221228 | None:intergenic |
GTTAATGGCTTTCGATGATG+AGG | 0.645112 | 6_4:+71220786 | Msa0995270:CDS |
TCTCCTGGGTGATAAACCAC+GGG | 0.646361 | 6_4:-71221552 | None:intergenic |
GCTAGTGTTCCAGCTAGTGG+TGG | 0.652322 | 6_4:+71220865 | Msa0995270:CDS |
CTGGGTGATAAACCACGGGA+AGG | 0.661556 | 6_4:-71221548 | None:intergenic |
GGTTATTCAGTAGTTTAGGG+GGG | 0.667813 | 6_4:+71222851 | Msa0995270:three_prime_UTR |
GGATGAGATGGAACTCGTTG+CGG | 0.671380 | 6_4:+71221484 | Msa0995270:three_prime_UTR |
GTAATAGAGTGATTCAGGAG+CGG | 0.681046 | 6_4:+71221762 | Msa0995270:three_prime_UTR |
TCTTGAATAAATGGGACGAG+TGG | 0.681165 | 6_4:+71222995 | Msa0995270:three_prime_UTR |
CATGTATTTCAGAAGCTGTG+TGG | 0.686088 | 6_4:+71221644 | Msa0995270:three_prime_UTR |
GCCGTGAAGAAAGAAATGAC+TGG | 0.693527 | 6_4:+71222830 | Msa0995270:three_prime_UTR |
TGAGTCTGAAAAGAATACTG+AGG | 0.711551 | 6_4:-71222763 | None:intergenic |
GAATCACCCTAATGCCCGGG+AGG | 0.714237 | 6_4:+71221083 | Msa0995270:CDS |
AGTCATTTCTTTCTTCACGG+CGG | 0.739854 | 6_4:-71222828 | None:intergenic |
AATGTGTTGGATGAGATGCA+AGG | 0.778166 | 6_4:+71221018 | Msa0995270:CDS |
CRISPR-GE
badsite warning | sgRNA_sequence | Strand | Position | Region | GC_content |
---|---|---|---|---|---|
!! | AAATATAAATTGATTAACAT+GGG | - | chr6_4:71221305-71221324 | None:intergenic | 10.0% |
!! | AAAATATAAATTGATTAACA+TGG | - | chr6_4:71221306-71221325 | None:intergenic | 10.0% |
!!! | AATTTCTGTGTTTTATATAT+TGG | + | chr6_4:71220012-71220031 | Msa0995270:intron | 15.0% |
!!! | TGTTTACTAATTTTGATTAT+TGG | + | chr6_4:71220210-71220229 | Msa0995270:intron | 15.0% |
!! | TCAATACATTATTAAAATGT+CGG | - | chr6_4:71221814-71221833 | None:intergenic | 15.0% |
!! | AACTATTAATTTATTTCCTT+TGG | + | chr6_4:71222512-71222531 | Msa0995270:intron | 15.0% |
!!! | ATTTGAAGTTATTTGTGTTT+TGG | + | chr6_4:71219964-71219983 | Msa0995270:intron | 20.0% |
!!! | TTTGAAGTTATTTGTGTTTT+GGG | + | chr6_4:71219965-71219984 | Msa0995270:intron | 20.0% |
!!! | TTGAGAATTTGATTCTTTTT+AGG | + | chr6_4:71220105-71220124 | Msa0995270:intron | 20.0% |
!!! | TGAGAATTTGATTCTTTTTA+GGG | + | chr6_4:71220106-71220125 | Msa0995270:intron | 20.0% |
!!! | TGCCAATTTGATTTTTTTTT+TGG | + | chr6_4:71220273-71220292 | Msa0995270:intron | 20.0% |
!!! | GCCAATTTGATTTTTTTTTT+GGG | + | chr6_4:71220274-71220293 | Msa0995270:intron | 20.0% |
!! | ACCCAAAAAAAAAATCAAAT+TGG | - | chr6_4:71220278-71220297 | None:intergenic | 20.0% |
!!! | AATTTGATTTTTTTTTTGGG+TGG | + | chr6_4:71220277-71220296 | Msa0995270:intron | 20.0% |
!! | ATTACCAAAATACAAATAAC+CGG | - | chr6_4:71220314-71220333 | None:intergenic | 20.0% |
!!! | TGTTACATATATAGGTTTTA+GGG | + | chr6_4:71220504-71220523 | Msa0995270:intron | 20.0% |
!!! | CATTGAAAATTTGAAGTTTT+GGG | + | chr6_4:71220606-71220625 | Msa0995270:intron | 20.0% |
!!! | ATTGAAAATTTGAAGTTTTG+GGG | + | chr6_4:71220607-71220626 | Msa0995270:intron | 20.0% |
!!! | TAGATTTTATCCATATTTCA+AGG | + | chr6_4:71221910-71221929 | Msa0995270:three_prime_UTR | 20.0% |
!! | CTTAAAAGATCATACTAATA+TGG | - | chr6_4:71221962-71221981 | None:intergenic | 20.0% |
!! | GAAAAATGAATATAAACTGA+AGG | - | chr6_4:71222173-71222192 | None:intergenic | 20.0% |
!! | TGAAGAAATAAATTGAACAT+CGG | - | chr6_4:71222914-71222933 | None:intergenic | 20.0% |
!!! | GTTAACATGAAATTTTGTAT+AGG | + | chr6_4:71223155-71223174 | Msa0995270:three_prime_UTR | 20.0% |
!! | GGTATGATTATTTGTGTTTT+GGG | + | chr6_4:71219866-71219885 | Msa0995270:intron | 25.0% |
!! | TTTGGGAATTTAACTTTAAC+TGG | + | chr6_4:71219883-71219902 | Msa0995270:intron | 25.0% |
!! | TTGGGAATTTAACTTTAACT+GGG | + | chr6_4:71219884-71219903 | Msa0995270:intron | 25.0% |
! | TTTGGGAATTAAACTTTCAA+TGG | + | chr6_4:71219982-71220001 | Msa0995270:intron | 25.0% |
! | TTGGGAATTAAACTTTCAAT+GGG | + | chr6_4:71219983-71220002 | Msa0995270:intron | 25.0% |
!! | TCTGTGTTTTATATATTGGT+TGG | + | chr6_4:71220016-71220035 | Msa0995270:intron | 25.0% |
!!! | TTTGATTCTTTTTAGGGTTT+AGG | + | chr6_4:71220112-71220131 | Msa0995270:intron | 25.0% |
!!! | TTGATTCTTTTTAGGGTTTA+GGG | + | chr6_4:71220113-71220132 | Msa0995270:intron | 25.0% |
!!! | CTATAGTTTGTTTTGGTTTA+GGG | + | chr6_4:71220185-71220204 | Msa0995270:intron | 25.0% |
!!! | TTTTTTTGGGTGGTTTTTTT+CGG | + | chr6_4:71220287-71220306 | Msa0995270:intron | 25.0% |
!! | GTGTTACATATATAGGTTTT+AGG | + | chr6_4:71220503-71220522 | Msa0995270:intron | 25.0% |
!!! | GCATTGAAAATTTGAAGTTT+TGG | + | chr6_4:71220605-71220624 | Msa0995270:intron | 25.0% |
!!! | TTGAAAATTTGAAGTTTTGG+GGG | + | chr6_4:71220608-71220627 | Msa0995270:intron | 25.0% |
!!! | TTTATGTGTGTTTTGATTCT+TGG | + | chr6_4:71220688-71220707 | Msa0995270:intron | 25.0% |
!! | TTAAGAATTTGAAACCTGAA+TGG | + | chr6_4:71220744-71220763 | Msa0995270:intron | 25.0% |
! | AAATGCAATTATGAAGAATG+AGG | + | chr6_4:71220969-71220988 | Msa0995270:CDS | 25.0% |
!! | ATTTTCTCAAACGATTCAAA+TGG | - | chr6_4:71221172-71221191 | None:intergenic | 25.0% |
!!! | AAATCGTCCTTTTTTGTTTT+TGG | + | chr6_4:71221188-71221207 | Msa0995270:three_prime_UTR | 25.0% |
! | TTCGTAACCAAAAACAAAAA+AGG | - | chr6_4:71221198-71221217 | None:intergenic | 25.0% |
!!! | TTTTTGTTTTTGGTTACGAA+TGG | + | chr6_4:71221198-71221217 | Msa0995270:three_prime_UTR | 25.0% |
!!! | AGATTTGTTTTATGCATGAT+TGG | + | chr6_4:71221362-71221381 | Msa0995270:three_prime_UTR | 25.0% |
! | ACAATCCTGAAATAATAGTA+GGG | - | chr6_4:71222034-71222053 | None:intergenic | 25.0% |
! | TACAATCCTGAAATAATAGT+AGG | - | chr6_4:71222035-71222054 | None:intergenic | 25.0% |
! | CTATTATTTCAGGATTGTAT+AGG | + | chr6_4:71222036-71222055 | Msa0995270:intron | 25.0% |
!!! | CAGTTTATATTCATTTTTCC+TGG | + | chr6_4:71222174-71222193 | Msa0995270:three_prime_UTR | 25.0% |
!!! | TTATATTCATTTTTCCTGGT+TGG | + | chr6_4:71222178-71222197 | Msa0995270:three_prime_UTR | 25.0% |
!!! | TATATTCATTTTTCCTGGTT+GGG | + | chr6_4:71222179-71222198 | Msa0995270:three_prime_UTR | 25.0% |
! | CTTCTGTATTTAAGTATTCT+TGG | - | chr6_4:71222570-71222589 | None:intergenic | 25.0% |
! | CAAGAATACTTAAATACAGA+AGG | + | chr6_4:71222568-71222587 | Msa0995270:three_prime_UTR | 25.0% |
! | ATCTGAGAAATACTATCTTA+AGG | + | chr6_4:71222695-71222714 | Msa0995270:three_prime_UTR | 25.0% |
! | GAAGAAATAAATTGAACATC+GGG | - | chr6_4:71222913-71222932 | None:intergenic | 25.0% |
!! | TTTTGCATAGTAATGCAATT+AGG | - | chr6_4:71223284-71223303 | None:intergenic | 25.0% |
! | GGGTATGATTATTTGTGTTT+TGG | + | chr6_4:71219865-71219884 | Msa0995270:intron | 30.0% |
! | TGGGAATTTAACTTTAACTG+GGG | + | chr6_4:71219885-71219904 | Msa0995270:intron | 30.0% |
! | TTGAATTTCTGTGTGCTTTT+AGG | + | chr6_4:71219910-71219929 | Msa0995270:intron | 30.0% |
! | TGAATTTCTGTGTGCTTTTA+GGG | + | chr6_4:71219911-71219930 | Msa0995270:intron | 30.0% |
TGGGAATTAAACTTTCAATG+GGG | + | chr6_4:71219984-71220003 | Msa0995270:intron | 30.0% | |
!!! | GTTATTTGTGTTTTGGTTCT+TGG | + | chr6_4:71220139-71220158 | Msa0995270:intron | 30.0% |
!!! | CATTGTGCTATAGTTTGTTT+TGG | + | chr6_4:71220178-71220197 | Msa0995270:intron | 30.0% |
!!! | GCTATAGTTTGTTTTGGTTT+AGG | + | chr6_4:71220184-71220203 | Msa0995270:intron | 30.0% |
!!! | TTTTTTGGGTGGTTTTTTTC+GGG | + | chr6_4:71220288-71220307 | Msa0995270:intron | 30.0% |
!! | TTTGGTAATTTTCCTCTAAC+TGG | + | chr6_4:71220325-71220344 | Msa0995270:intron | 30.0% |
!! | TTGGTAATTTTCCTCTAACT+GGG | + | chr6_4:71220326-71220345 | Msa0995270:intron | 30.0% |
! | AGTGTAGGTGTTACATATAT+AGG | + | chr6_4:71220496-71220515 | Msa0995270:intron | 30.0% |
CGTCTTAAATTTCTGTGTAT+TGG | + | chr6_4:71220546-71220565 | Msa0995270:intron | 30.0% | |
!!! | AAGGGTTTACTTTTTTGCTT+TGG | + | chr6_4:71221050-71221069 | Msa0995270:CDS | 30.0% |
CAGTCTAGTTAACTATACAA+AGG | - | chr6_4:71221231-71221250 | None:intergenic | 30.0% | |
TATAGTTAACTAGACTGCAA+AGG | + | chr6_4:71221234-71221253 | Msa0995270:three_prime_UTR | 30.0% | |
! | CAAATCTAGTTTGAAAACAG+AGG | - | chr6_4:71221349-71221368 | None:intergenic | 30.0% |
! | GTTTTATGCATGATTGGAAT+TGG | + | chr6_4:71221368-71221387 | Msa0995270:three_prime_UTR | 30.0% |
!! | GCGATATTTTTAAACGTCAT+TGG | + | chr6_4:71221728-71221747 | Msa0995270:three_prime_UTR | 30.0% |
ATCATTCAGACCTTGAAATA+TGG | - | chr6_4:71221923-71221942 | None:intergenic | 30.0% | |
TGAAATAATAGTAGGGAGAT+GGG | - | chr6_4:71222027-71222046 | None:intergenic | 30.0% | |
GATTGTATAGGAGTAATTGA+TGG | + | chr6_4:71222048-71222067 | Msa0995270:three_prime_UTR | 30.0% | |
! | TTCCTTTGGATTTGTTTCAT+AGG | + | chr6_4:71222526-71222545 | Msa0995270:intron | 30.0% |
TTCCTATGAAACAAATCCAA+AGG | - | chr6_4:71222531-71222550 | None:intergenic | 30.0% | |
TTAAGTATTCTTGGTCAACA+AGG | - | chr6_4:71222561-71222580 | None:intergenic | 30.0% | |
ACTGGTTATTCAGTAGTTTA+GGG | + | chr6_4:71222848-71222867 | Msa0995270:three_prime_UTR | 30.0% | |
TATTTCTTCAATACCAGAAC+AGG | + | chr6_4:71222924-71222943 | Msa0995270:three_prime_UTR | 30.0% | |
TTGACGACTTCTTGAATAAA+TGG | + | chr6_4:71222986-71223005 | Msa0995270:three_prime_UTR | 30.0% | |
TGACGACTTCTTGAATAAAT+GGG | + | chr6_4:71222987-71223006 | Msa0995270:three_prime_UTR | 30.0% | |
GATATGTCATTGTCATTGAT+TGG | + | chr6_4:71223032-71223051 | Msa0995270:three_prime_UTR | 30.0% | |
! | TTGATTGGTTACTCAATTTG+CGG | + | chr6_4:71223047-71223066 | Msa0995270:three_prime_UTR | 30.0% |
TGACCTAACATCAAATCAAA+TGG | - | chr6_4:71223126-71223145 | None:intergenic | 30.0% | |
! | TTTTATTGAGTGAGATTGTG+AGG | + | chr6_4:71223203-71223222 | Msa0995270:three_prime_UTR | 30.0% |
!!! | TTCTTTTTAGGGTTTAGGGT+TGG | + | chr6_4:71220117-71220136 | Msa0995270:intron | 35.0% |
!!! | AGGGTTGGTTATTTGTGTTT+TGG | + | chr6_4:71220132-71220151 | Msa0995270:intron | 35.0% |
! | TGGTAATTTTCCTCTAACTG+GGG | + | chr6_4:71220327-71220346 | Msa0995270:intron | 35.0% |
AAATTCAAAACCCCAGTTAG+AGG | - | chr6_4:71220340-71220359 | None:intergenic | 35.0% | |
ATATGTAACACCTACACTTC+AGG | - | chr6_4:71220494-71220513 | None:intergenic | 35.0% | |
!!! | AGGTTTTAGGGTTTTAGTGT+TGG | + | chr6_4:71220516-71220535 | Msa0995270:intron | 35.0% |
! | TACACAGAAATTTAAGACGC+CGG | - | chr6_4:71220545-71220564 | None:intergenic | 35.0% |
!!! | TTTGAAGTTTTGGGGGTTTT+AGG | + | chr6_4:71220615-71220634 | Msa0995270:intron | 35.0% |
!!! | TTGAAGTTTTGGGGGTTTTA+GGG | + | chr6_4:71220616-71220635 | Msa0995270:intron | 35.0% |
GCTGGTTATTTGTGTTCTTT+CGG | + | chr6_4:71220638-71220657 | Msa0995270:intron | 35.0% | |
! | TCGGTAATTTTCCTAGAAAC+AGG | + | chr6_4:71220657-71220676 | Msa0995270:intron | 35.0% |
! | CGGTAATTTTCCTAGAAACA+GGG | + | chr6_4:71220658-71220677 | Msa0995270:intron | 35.0% |
! | AAATTGAAAGCCCTGTTTCT+AGG | - | chr6_4:71220671-71220690 | None:intergenic | 35.0% |
AAAAACACAGCAAACCATTC+AGG | - | chr6_4:71220761-71220780 | None:intergenic | 35.0% | |
!! | CTGTGTTTTTGCAGTGTTAA+TGG | + | chr6_4:71220771-71220790 | Msa0995270:intron | 35.0% |
TAATAGAGATGAAAACCTCC+CGG | - | chr6_4:71221101-71221120 | None:intergenic | 35.0% | |
AGAGTGAAAAAAGAATGCCA+TGG | + | chr6_4:71221121-71221140 | Msa0995270:CDS | 35.0% | |
TTCTCAAACGATTCAAATGG+AGG | - | chr6_4:71221169-71221188 | None:intergenic | 35.0% | |
! | GTTTGAAAACAGAGGTATGT+TGG | - | chr6_4:71221341-71221360 | None:intergenic | 35.0% |
! | ACTTTTGTCGTGAAATGTTG+CGG | + | chr6_4:71221612-71221631 | Msa0995270:three_prime_UTR | 35.0% |
TCACTCTATTACGTTCACTA+TGG | - | chr6_4:71221754-71221773 | None:intergenic | 35.0% | |
TGAACGTAATAGAGTGATTC+AGG | + | chr6_4:71221757-71221776 | Msa0995270:three_prime_UTR | 35.0% | |
AGCACATAGAGTGATAAACA+GGG | - | chr6_4:71221989-71222008 | None:intergenic | 35.0% | |
TAGCACATAGAGTGATAAAC+AGG | - | chr6_4:71221990-71222009 | None:intergenic | 35.0% | |
CTGAAATAATAGTAGGGAGA+TGG | - | chr6_4:71222028-71222047 | None:intergenic | 35.0% | |
CATCTCCCTACTATTATTTC+AGG | + | chr6_4:71222026-71222045 | Msa0995270:intron | 35.0% | |
TCTCGATTTCGCAATAAGAA+AGG | + | chr6_4:71222108-71222127 | Msa0995270:three_prime_UTR | 35.0% | |
TTTGTGGGAAATTCTGATCT+GGG | - | chr6_4:71222251-71222270 | None:intergenic | 35.0% | |
ATTTGTGGGAAATTCTGATC+TGG | - | chr6_4:71222252-71222271 | None:intergenic | 35.0% | |
AATTTCCCACAAATTCCTCA+AGG | + | chr6_4:71222258-71222277 | Msa0995270:three_prime_UTR | 35.0% | |
ATAAATGCTAACGAACCTTG+AGG | - | chr6_4:71222276-71222295 | None:intergenic | 35.0% | |
TACTACACAGATAACTGACA+AGG | - | chr6_4:71222319-71222338 | None:intergenic | 35.0% | |
CTATGAAACACAAACTCACA+TGG | - | chr6_4:71222468-71222487 | None:intergenic | 35.0% | |
CATGTGAGTTTGTGTTTCAT+AGG | + | chr6_4:71222466-71222485 | Msa0995270:intron | 35.0% | |
! | GATTTCTTGCTCCTTTTCAA+GGG | + | chr6_4:71222590-71222609 | Msa0995270:three_prime_UTR | 35.0% |
!! | ATTTCTTGCTCCTTTTCAAG+GGG | + | chr6_4:71222591-71222610 | Msa0995270:three_prime_UTR | 35.0% |
TACCAACCTTATGAGTTTAG+AGG | + | chr6_4:71222619-71222638 | Msa0995270:three_prime_UTR | 35.0% | |
TTAGCACCTCTAAACTCATA+AGG | - | chr6_4:71222628-71222647 | None:intergenic | 35.0% | |
AACAACTCCTTTGCATTTCT+TGG | - | chr6_4:71222658-71222677 | None:intergenic | 35.0% | |
CAAAGGAGTTGTTCAATCAT+AGG | + | chr6_4:71222665-71222684 | Msa0995270:three_prime_UTR | 35.0% | |
TGAGTCTGAAAAGAATACTG+AGG | - | chr6_4:71222766-71222785 | None:intergenic | 35.0% | |
! | AGTATTCTTTTCAGACTCAG+CGG | + | chr6_4:71222767-71222786 | Msa0995270:three_prime_UTR | 35.0% |
ACCAGTCATTTCTTTCTTCA+CGG | - | chr6_4:71222834-71222853 | None:intergenic | 35.0% | |
! | GACTGGTTATTCAGTAGTTT+AGG | + | chr6_4:71222847-71222866 | Msa0995270:three_prime_UTR | 35.0% |
CTGGTTATTCAGTAGTTTAG+GGG | + | chr6_4:71222849-71222868 | Msa0995270:three_prime_UTR | 35.0% | |
TGGTTATTCAGTAGTTTAGG+GGG | + | chr6_4:71222850-71222869 | Msa0995270:three_prime_UTR | 35.0% | |
! | TGATTGGTTACTCAATTTGC+GGG | + | chr6_4:71223048-71223067 | Msa0995270:three_prime_UTR | 35.0% |
TGCAAATGATTGAATCACAC+AGG | - | chr6_4:71223088-71223107 | None:intergenic | 35.0% | |
CCTAACATCAAATCAAATGG+TGG | - | chr6_4:71223123-71223142 | None:intergenic | 35.0% | |
!! | CCACCATTTGATTTGATGTT+AGG | + | chr6_4:71223120-71223139 | Msa0995270:three_prime_UTR | 35.0% |
TGTATAGGCTCTGCATATAA+TGG | + | chr6_4:71223170-71223189 | Msa0995270:three_prime_UTR | 35.0% | |
TGATCGACGAAACTTGACAT+CGG | + | chr6_4:71220370-71220389 | Msa0995270:intron | 40.0% | |
ACGAAACTTGACATCGGATA+CGG | + | chr6_4:71220376-71220395 | Msa0995270:intron | 40.0% | |
ACATGTTCAACCTGAAGTGT+AGG | + | chr6_4:71220481-71220500 | Msa0995270:intron | 40.0% | |
!!! | AGGGTTTTAGTGTTGGTTAC+CGG | + | chr6_4:71220523-71220542 | Msa0995270:intron | 40.0% |
GTTAATGGCTTTCGATGATG+AGG | + | chr6_4:71220786-71220805 | Msa0995270:CDS | 40.0% | |
GATGATGCGAACATGTTAGA+CGG | + | chr6_4:71220829-71220848 | Msa0995270:CDS | 40.0% | |
TAGCAGCTGCTTCAAAAATG+AGG | + | chr6_4:71220944-71220963 | Msa0995270:CDS | 40.0% | |
AGCAGCTGCTTCAAAAATGA+GGG | + | chr6_4:71220945-71220964 | Msa0995270:CDS | 40.0% | |
AAGCAAGTGCATCAATGTGT+TGG | + | chr6_4:71221005-71221024 | Msa0995270:CDS | 40.0% | |
AATGTGTTGGATGAGATGCA+AGG | + | chr6_4:71221018-71221037 | Msa0995270:CDS | 40.0% | |
AGATGCAAGGTCTTGATGAA+AGG | + | chr6_4:71221031-71221050 | Msa0995270:CDS | 40.0% | |
GATGCAAGGTCTTGATGAAA+GGG | + | chr6_4:71221032-71221051 | Msa0995270:CDS | 40.0% | |
AATAGAGATGAAAACCTCCC+GGG | - | chr6_4:71221100-71221119 | None:intergenic | 40.0% | |
AAAAAGAATGCCATGGTTGC+AGG | + | chr6_4:71221128-71221147 | Msa0995270:CDS | 40.0% | |
AAAAGAATGCCATGGTTGCA+GGG | + | chr6_4:71221129-71221148 | Msa0995270:CDS | 40.0% | |
! | CAAAATTTTCCCTGCAACCA+TGG | - | chr6_4:71221141-71221160 | None:intergenic | 40.0% |
TACAGATACACCAATCAGCA+TGG | + | chr6_4:71221442-71221461 | Msa0995270:three_prime_UTR | 40.0% | |
ACAGATACACCAATCAGCAT+GGG | + | chr6_4:71221443-71221462 | Msa0995270:three_prime_UTR | 40.0% | |
TCAATATCACCCATGCTGAT+TGG | - | chr6_4:71221455-71221474 | None:intergenic | 40.0% | |
GGGTGATATTGACATGGAAT+TGG | + | chr6_4:71221463-71221482 | Msa0995270:three_prime_UTR | 40.0% | |
TGACATGGAATTGGATGAGA+TGG | + | chr6_4:71221472-71221491 | Msa0995270:three_prime_UTR | 40.0% | |
ACCCAGGAGATGTAGATTTA+TGG | + | chr6_4:71221565-71221584 | Msa0995270:three_prime_UTR | 40.0% | |
GCCATAAATCTACATCTCCT+GGG | - | chr6_4:71221569-71221588 | None:intergenic | 40.0% | |
TGCCATAAATCTACATCTCC+TGG | - | chr6_4:71221570-71221589 | None:intergenic | 40.0% | |
!! | TTTATGGCAGAAGTGCTGAA+TGG | + | chr6_4:71221581-71221600 | Msa0995270:three_prime_UTR | 40.0% |
CATGTATTTCAGAAGCTGTG+TGG | + | chr6_4:71221644-71221663 | Msa0995270:three_prime_UTR | 40.0% | |
TATCACGTAACATGGCTCTT+TGG | - | chr6_4:71221679-71221698 | None:intergenic | 40.0% | |
!! | ACCAGAAGTATCACGTAACA+TGG | - | chr6_4:71221687-71221706 | None:intergenic | 40.0% |
GTAATAGAGTGATTCAGGAG+CGG | + | chr6_4:71221762-71221781 | Msa0995270:three_prime_UTR | 40.0% | |
! | TGAATTTTTGCAACCTCCTG+AGG | + | chr6_4:71221856-71221875 | Msa0995270:three_prime_UTR | 40.0% |
CTAGCACTGTTGAGAATTTC+TGG | - | chr6_4:71221893-71221912 | None:intergenic | 40.0% | |
AATCGAGATTGATCTTTGGC+CGG | - | chr6_4:71222096-71222115 | None:intergenic | 40.0% | |
GCGAAATCGAGATTGATCTT+TGG | - | chr6_4:71222100-71222119 | None:intergenic | 40.0% | |
!!! | CTGCAAGCACATTTTGAGAT+AGG | - | chr6_4:71222137-71222156 | None:intergenic | 40.0% |
!! | TTCATTTTTCCTGGTTGGGA+AGG | + | chr6_4:71222183-71222202 | Msa0995270:three_prime_UTR | 40.0% |
AATTCTGATCTGGGTCATCA+AGG | - | chr6_4:71222242-71222261 | None:intergenic | 40.0% | |
ACGAACCTTGAGGAATTTGT+GGG | - | chr6_4:71222266-71222285 | None:intergenic | 40.0% | |
AACGAACCTTGAGGAATTTG+TGG | - | chr6_4:71222267-71222286 | None:intergenic | 40.0% | |
TCTGTGTAGTACAAACACGT+TGG | + | chr6_4:71222328-71222347 | Msa0995270:intron | 40.0% | |
GTACAAACACGTTGGATCAA+AGG | + | chr6_4:71222336-71222355 | Msa0995270:intron | 40.0% | |
! | GGATTTCTTGCTCCTTTTCA+AGG | + | chr6_4:71222589-71222608 | Msa0995270:three_prime_UTR | 40.0% |
CACCTCTAAACTCATAAGGT+TGG | - | chr6_4:71222624-71222643 | None:intergenic | 40.0% | |
TCACCTACCAAGAAATGCAA+AGG | + | chr6_4:71222648-71222667 | Msa0995270:three_prime_UTR | 40.0% | |
ACTCCTTTGCATTTCTTGGT+AGG | - | chr6_4:71222654-71222673 | None:intergenic | 40.0% | |
GAGGAGCAAGTTTCATGATT+GGG | - | chr6_4:71222747-71222766 | None:intergenic | 40.0% | |
TGAGGAGCAAGTTTCATGAT+TGG | - | chr6_4:71222748-71222767 | None:intergenic | 40.0% | |
! | GTATTCTTTTCAGACTCAGC+GGG | + | chr6_4:71222768-71222787 | Msa0995270:three_prime_UTR | 40.0% |
AGTCATTTCTTTCTTCACGG+CGG | - | chr6_4:71222831-71222850 | None:intergenic | 40.0% | |
GGTTATTCAGTAGTTTAGGG+GGG | + | chr6_4:71222851-71222870 | Msa0995270:three_prime_UTR | 40.0% | |
AATGAGAATGCAACCTGTTC+TGG | - | chr6_4:71222940-71222959 | None:intergenic | 40.0% | |
TCTTGAATAAATGGGACGAG+TGG | + | chr6_4:71222995-71223014 | Msa0995270:three_prime_UTR | 40.0% | |
!! | ATTTGCGGGTTTGTTGCAAA+TGG | + | chr6_4:71223062-71223081 | Msa0995270:three_prime_UTR | 40.0% |
AGTGAGATTGTGAGGAATCT+TGG | + | chr6_4:71223211-71223230 | Msa0995270:three_prime_UTR | 40.0% | |
GTGAGATTGTGAGGAATCTT+GGG | + | chr6_4:71223212-71223231 | Msa0995270:three_prime_UTR | 40.0% | |
! | CGGGCCGGTTATTTGTATTT+TGG | + | chr6_4:71220307-71220326 | Msa0995270:intron | 45.0% |
ATGGCTTTCGATGATGAGGA+TGG | + | chr6_4:71220790-71220809 | Msa0995270:CDS | 45.0% | |
GATGATGAGGATGGTTCTTC+AGG | + | chr6_4:71220799-71220818 | Msa0995270:CDS | 45.0% | |
! | TGGCATCACCAGAAGCTTTT+CGG | - | chr6_4:71220903-71220922 | None:intergenic | 45.0% |
TTGAGAATCACCCTAATGCC+CGG | + | chr6_4:71221079-71221098 | Msa0995270:CDS | 45.0% | |
CAGCATGGGTGATATTGACA+TGG | + | chr6_4:71221457-71221476 | Msa0995270:three_prime_UTR | 45.0% | |
ATCTCCTGGGTGATAAACCA+CGG | - | chr6_4:71221556-71221575 | None:intergenic | 45.0% | |
TTGTCGTGAAATGTTGCGGA+TGG | + | chr6_4:71221616-71221635 | Msa0995270:three_prime_UTR | 45.0% | |
GCCATGTTACGTGATACTTC+TGG | + | chr6_4:71221683-71221702 | Msa0995270:three_prime_UTR | 45.0% | |
! | TCTGGTGATGTTGTATCCTC+AGG | - | chr6_4:71221875-71221894 | None:intergenic | 45.0% |
GCAAATTCCTGCACATGTTC+CGG | + | chr6_4:71222074-71222093 | Msa0995270:three_prime_UTR | 45.0% | |
!! | TTGCTCCTTTTCAAGGGGTT+CGG | + | chr6_4:71222596-71222615 | Msa0995270:three_prime_UTR | 45.0% |
GCCGTGAAGAAAGAAATGAC+TGG | + | chr6_4:71222830-71222849 | Msa0995270:three_prime_UTR | 45.0% | |
!!! | TTGGGTGGTTTTTTTCGGGC+CGG | + | chr6_4:71220292-71220311 | Msa0995270:intron | 50.0% |
GACAACGACACATGTGGATG+TGG | - | chr6_4:71220456-71220475 | None:intergenic | 50.0% | |
TGCACAGACAACGACACATG+TGG | - | chr6_4:71220462-71220481 | None:intergenic | 50.0% | |
!!! | AGTTTTGGGGGTTTTAGGGC+TGG | + | chr6_4:71220620-71220639 | Msa0995270:intron | 50.0% |
CAAGCTAGTGTTCCAGCTAG+TGG | + | chr6_4:71220862-71220881 | Msa0995270:CDS | 50.0% | |
! | AGCTTCTGGTGATGCCATAG+TGG | + | chr6_4:71220906-71220925 | Msa0995270:CDS | 50.0% |
CTGCATCATGGCATCCACTA+TGG | - | chr6_4:71220923-71220942 | None:intergenic | 50.0% | |
AGCAGCTGCTATCTGCATCA+TGG | - | chr6_4:71220935-71220954 | None:intergenic | 50.0% | |
TGAGAATCACCCTAATGCCC+GGG | + | chr6_4:71221080-71221099 | Msa0995270:CDS | 50.0% | |
TGAAAACCTCCCGGGCATTA+GGG | - | chr6_4:71221092-71221111 | None:intergenic | 50.0% | |
ATGAAAACCTCCCGGGCATT+AGG | - | chr6_4:71221093-71221112 | None:intergenic | 50.0% | |
GGATGAGATGGAACTCGTTG+CGG | + | chr6_4:71221484-71221503 | Msa0995270:three_prime_UTR | 50.0% | |
CTAACAAAACAGCCTTCCCG+TGG | + | chr6_4:71221536-71221555 | Msa0995270:three_prime_UTR | 50.0% | |
TCTCCTGGGTGATAAACCAC+GGG | - | chr6_4:71221555-71221574 | None:intergenic | 50.0% | |
CACGTAACATGGCTCTTTGG+CGG | - | chr6_4:71221676-71221695 | None:intergenic | 50.0% | |
GGTGATGTTGTATCCTCAGG+AGG | - | chr6_4:71221872-71221891 | None:intergenic | 50.0% | |
!! | AAGGTTCTGTCACCGACTCA+CGG | + | chr6_4:71222202-71222221 | Msa0995270:three_prime_UTR | 50.0% |
TGCCTTTAACACCCGTGAGT+CGG | - | chr6_4:71222217-71222236 | None:intergenic | 50.0% | |
! | TGGTACCGAACCCCTTGAAA+AGG | - | chr6_4:71222604-71222623 | None:intergenic | 50.0% |
TAGTTTAGGGGGGACATTCG+TGG | + | chr6_4:71222861-71222880 | Msa0995270:three_prime_UTR | 50.0% | |
TGAACATCGGGAAGTTCGTC+AGG | - | chr6_4:71222901-71222920 | None:intergenic | 50.0% | |
GAGGATGGTTCTTCAGGCTC+AGG | + | chr6_4:71220805-71220824 | Msa0995270:CDS | 55.0% | |
GCTAGTGTTCCAGCTAGTGG+TGG | + | chr6_4:71220865-71220884 | Msa0995270:CDS | 55.0% | |
GTGTTCCAGCTAGTGGTGGT+CGG | + | chr6_4:71220869-71220888 | Msa0995270:CDS | 55.0% | |
AGCTAGTGGTGGTCGGAAGA+GGG | + | chr6_4:71220876-71220895 | Msa0995270:CDS | 55.0% | |
AAGAGGGGCCGAAAAGCTTC+TGG | + | chr6_4:71220892-71220911 | Msa0995270:CDS | 55.0% | |
CTGGGTGATAAACCACGGGA+AGG | - | chr6_4:71221551-71221570 | None:intergenic | 55.0% | |
CTTCCCGTGGTTTATCACCC+AGG | + | chr6_4:71221549-71221568 | Msa0995270:three_prime_UTR | 55.0% | |
TCAGGAGCGGTTTCAGCACT+CGG | + | chr6_4:71221775-71221794 | Msa0995270:three_prime_UTR | 55.0% | |
TCTTTGGCCGGAACATGTGC+AGG | - | chr6_4:71222084-71222103 | None:intergenic | 55.0% | |
GTGACAGAACCTTCCCAACC+AGG | - | chr6_4:71222195-71222214 | None:intergenic | 55.0% | |
!! | AGGTTCTGTCACCGACTCAC+GGG | + | chr6_4:71222203-71222222 | Msa0995270:three_prime_UTR | 55.0% |
!! | CACCGACTCACGGGTGTTAA+AGG | + | chr6_4:71222212-71222231 | Msa0995270:three_prime_UTR | 55.0% |
! | CGTTGGATCAAAGGCGTGTC+TGG | + | chr6_4:71222345-71222364 | Msa0995270:intron | 55.0% |
! | AATGGGACGAGTGGTGATGC+TGG | + | chr6_4:71223004-71223023 | Msa0995270:three_prime_UTR | 55.0% |
CTCTTCCGACCACCACTAGC+TGG | - | chr6_4:71220877-71220896 | None:intergenic | 60.0% | |
CAGCTAGTGGTGGTCGGAAG+AGG | + | chr6_4:71220875-71220894 | Msa0995270:CDS | 60.0% | |
GCTAGTGGTGGTCGGAAGAG+GGG | + | chr6_4:71220877-71220896 | Msa0995270:CDS | 60.0% | |
GAATCACCCTAATGCCCGGG+AGG | + | chr6_4:71221083-71221102 | Msa0995270:CDS | 60.0% | |
CAGGAGCGGTTTCAGCACTC+GGG | + | chr6_4:71221776-71221795 | Msa0995270:three_prime_UTR | 60.0% | |
!! | CGTGTCAGTGTCGACCGTGT+CGG | - | chr6_4:71222374-71222393 | None:intergenic | 60.0% |
GAACTCGTTGCGGCTGCTGC+TGG | + | chr6_4:71221494-71221513 | Msa0995270:three_prime_UTR | 65.0% | |
! | GGCGTGTCTGGCTTCCGACA+CGG | + | chr6_4:71222357-71222376 | Msa0995270:intron | 65.0% |
Chromosome | Type | Strat | End | Strand | Name |
---|---|---|---|---|---|
chr6_4 | gene | 71219863 | 71223306 | 71219863 | ID=Msa0995270;Name=Msa0995270 |
chr6_4 | mRNA | 71219863 | 71223306 | 71219863 | ID=Msa0995270-mRNA-1;Parent=Msa0995270;Name=Msa0995270-mRNA-1;_AED=0.05;_eAED=0.05;_QI=0|0.66|0.75|0.75|1|0.75|4|1746|131 |
chr6_4 | exon | 71219863 | 71219866 | 71219863 | ID=Msa0995270-mRNA-1:exon:13229;Parent=Msa0995270-mRNA-1 |
chr6_4 | exon | 71220785 | 71221931 | 71220785 | ID=Msa0995270-mRNA-1:exon:13230;Parent=Msa0995270-mRNA-1 |
chr6_4 | exon | 71222048 | 71222279 | 71222048 | ID=Msa0995270-mRNA-1:exon:13231;Parent=Msa0995270-mRNA-1 |
chr6_4 | exon | 71222548 | 71223306 | 71222548 | ID=Msa0995270-mRNA-1:exon:13232;Parent=Msa0995270-mRNA-1 |
chr6_4 | CDS | 71219863 | 71219866 | 71219863 | ID=Msa0995270-mRNA-1:cds;Parent=Msa0995270-mRNA-1 |
chr6_4 | CDS | 71220785 | 71221176 | 71220785 | ID=Msa0995270-mRNA-1:cds;Parent=Msa0995270-mRNA-1 |
chr6_4 | three_prime_UTR | 71221177 | 71221931 | 71221177 | ID=Msa0995270-mRNA-1:three_prime_utr;Parent=Msa0995270-mRNA-1 |
chr6_4 | three_prime_UTR | 71222048 | 71222279 | 71222048 | ID=Msa0995270-mRNA-1:three_prime_utr;Parent=Msa0995270-mRNA-1 |
chr6_4 | three_prime_UTR | 71222548 | 71223306 | 71222548 | ID=Msa0995270-mRNA-1:three_prime_utr;Parent=Msa0995270-mRNA-1 |
Gene Sequence |
Protein sequence |