AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa0990960


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0990960 MtrunA17_Chr6g0470981 96.682 663 22 0 1 663 1 663 0.0 1289
Msa0990960 MtrunA17_Chr3g0123611 40.103 581 312 11 1 551 1 575 4.41e-104 328
Msa0990960 MtrunA17_Chr7g0220541 37.986 566 317 10 15 571 9 549 2.62e-92 298
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa0990960 AT1G68910.1 44.550 633 305 12 28 650 24 620 3.93e-141 426
Msa0990960 AT1G68910.2 48.315 534 258 7 28 559 24 541 5.90e-141 424
Msa0990960 AT1G68910.3 48.315 534 258 7 28 559 24 541 5.90e-141 424
Msa0990960 AT5G11390.1 39.968 623 322 11 15 593 25 639 7.76e-106 337

Find 123 sgRNAs with CRISPR-Local

Find 361 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
CCTTATTTATCCACAATTAT+TGG 0.160536 6_4:-54091407 Msa0990960:five_prime_UTR
CATTTCTTGGACCTCTTTCT+TGG 0.161993 6_4:+54089552 None:intergenic
CTAAAGCTGCATCCATTTCT+TGG 0.199806 6_4:+54089539 None:intergenic
GCAATTACAACAACAGTTAT+TGG 0.208222 6_4:-54089113 Msa0990960:CDS
TTCTACCATTCTCTGATCTT+TGG 0.221608 6_4:+54088865 None:intergenic
GAAGAGCTGAACTTTCTTAA+AGG 0.224825 6_4:-54088224 Msa0990960:CDS
CCCTTCAAAGAAGAATTTAA+AGG 0.238806 6_4:+54085841 None:intergenic
ACACTTCAATAAAACCTTTC+AGG 0.255369 6_4:-54087034 Msa0990960:intron
TACCTTTCTATAAATGCTTC+TGG 0.258106 6_4:+54091251 None:intergenic
CAATGCTACCGAGGTGTTAA+TGG 0.262222 6_4:-54088660 Msa0990960:CDS
AACAAAGTTTATCATGGATT+TGG 0.269879 6_4:-54087850 Msa0990960:CDS
ATATGTTATACACAGCAATT+TGG 0.281088 6_4:-54088088 Msa0990960:CDS
AATATGTTTCTCCAATTTGT+AGG 0.281415 6_4:+54086012 None:intergenic
AAGTTTGGTAGGAAAGTTAA+AGG 0.285452 6_4:-54087172 Msa0990960:CDS
AATTGAAGAGCTAAAATCTA+AGG 0.296015 6_4:-54088051 Msa0990960:CDS
AAATGCTTCTGGACTCTATC+TGG 0.302226 6_4:+54091262 None:intergenic
TGTTCTGTATATTTATCTAT+TGG 0.302396 6_4:-54089386 Msa0990960:CDS
ATACACAGCAATTTGGGATA+TGG 0.307575 6_4:-54088081 Msa0990960:CDS
GGGGATTTCGAAAAGTATAA+TGG 0.309555 6_4:-54088639 Msa0990960:CDS
CCAATAATTGTGGATAAATA+AGG 0.318806 6_4:+54091407 None:intergenic
AAGAAGCAGCAGAAGTTGTT+TGG 0.325223 6_4:-54088703 Msa0990960:CDS
ATCCATGATAAACTTTGTTC+TGG 0.336896 6_4:+54087854 None:intergenic
TACTGAGGTGTTGGATTTGA+GGG 0.336994 6_4:-54088456 Msa0990960:CDS
ATTCATATACACAGGGGAAA+TGG 0.346219 6_4:-54088942 Msa0990960:intron
TTTCTTGGTTCAGAAATTAG+AGG 0.348271 6_4:+54089567 None:intergenic
CCGATGATCTATTTCTGTTA+AGG 0.349046 6_4:+54089444 None:intergenic
AAAACAGGAAAATAAAAGTT+TGG 0.349494 6_4:-54087187 Msa0990960:CDS
AGAAGCAGCAGAAGTTGTTT+GGG 0.356426 6_4:-54088702 Msa0990960:CDS
GGTGTTGGTCTTCTGCTTGT+TGG 0.361301 6_4:-54085956 Msa0990960:CDS
TTCATATACACAGGGGAAAT+GGG 0.379165 6_4:-54088941 Msa0990960:intron
AATGCTACCGAGGTGTTAAT+GGG 0.379167 6_4:-54088659 Msa0990960:CDS
CCAGCTCTTTATGAAGTTCA+AGG 0.382440 6_4:+54087964 None:intergenic
CAGCAAATAAGCCTACAAAT+TGG 0.383649 6_4:-54086023 Msa0990960:CDS
TAGGTGGCTGTGGTTGTTGT+GGG 0.385538 6_4:+54091663 None:intergenic
AAGAGCTGAACTTTCTTAAA+GGG 0.392409 6_4:-54088223 Msa0990960:CDS
TATGTTATACACAGCAATTT+GGG 0.393418 6_4:-54088087 Msa0990960:CDS
TCCTTTAAATTCTTCTTTGA+AGG 0.394812 6_4:-54085842 Msa0990960:three_prime_UTR
TGAAGAGGAAGAAGTCAAAA+TGG 0.408481 6_4:+54091431 None:intergenic
GCTTTGCATGAAAACATCAT+TGG 0.410569 6_4:-54087922 Msa0990960:CDS
CAAGAAAGAGGTCCAAGAAA+TGG 0.412409 6_4:-54089551 Msa0990960:exon
TTGAGTTTGAGTTTGAGTTC+TGG 0.416867 6_4:+54091551 None:intergenic
ATGCCTTCGCATTCTGTAGT+TGG 0.418735 6_4:+54088138 None:intergenic
ATCACTCCAACGTACGGTTT+AGG 0.423933 6_4:+54091644 None:intergenic
GGGATTTCGAAAAGTATAAT+GGG 0.426529 6_4:-54088638 Msa0990960:CDS
TACCAGAACAAAGTTTATCA+TGG 0.428221 6_4:-54087856 Msa0990960:CDS
TAATTGCTTCTTAGACTCTT+CGG 0.428486 6_4:+54089129 None:intergenic
ATGCAAGTTCACCAGCTTCT+CGG 0.428648 6_4:+54089408 None:intergenic
AAGTTAAAGGAGACTAAAAT+TGG 0.430349 6_4:-54087159 Msa0990960:CDS
TGAGGTTGAACTCAGTTACT+TGG 0.431369 6_4:+54088609 None:intergenic
CTACAAGGTAAATAAACAAA+AGG 0.432208 6_4:+54091353 None:intergenic
AAGGGAGCGCATTAATAAAC+AGG 0.433397 6_4:-54087808 Msa0990960:intron
ATGCTGCTTTAGAGAAGAAC+GGG 0.446606 6_4:-54088514 Msa0990960:CDS
ATACTGAGGTGTTGGATTTG+AGG 0.449553 6_4:-54088457 Msa0990960:CDS
CACCAGCTTCTCGGAAGAAT+AGG 0.454696 6_4:+54089417 None:intergenic
AACAGAGCTTGACAATTTCA+TGG 0.456939 6_4:-54089251 Msa0990960:CDS
ATGATGTTTGATCTGTTGTC+TGG 0.458775 6_4:-54089292 Msa0990960:CDS
GCAAGGATATATCAAGATCT+TGG 0.461436 6_4:+54089470 None:intergenic
GTCCAGAAGCATTTATAGAA+AGG 0.461524 6_4:-54091253 Msa0990960:intron
GCAGCTAGATGCTTTAAAAC+AGG 0.463620 6_4:-54087202 Msa0990960:intron
GAAGAACAAAATTGAGAGAC+AGG 0.465219 6_4:+54091602 None:intergenic
ACAAAATCATTTGATGAAGA+AGG 0.480014 6_4:-54087063 Msa0990960:CDS
TATTTCTGTTAAGGCTTGCA+AGG 0.481548 6_4:+54089453 None:intergenic
CCTTTAAATTCTTCTTTGAA+GGG 0.484982 6_4:-54085841 Msa0990960:three_prime_UTR
ATCATTTGATGAAGAAGGAA+TGG 0.487382 6_4:-54087058 Msa0990960:CDS
AGCCTATTCTTCCGAGAAGC+TGG 0.487690 6_4:-54089419 Msa0990960:CDS
TCAACTTACAATTCTCATGT+TGG 0.490472 6_4:+54089044 None:intergenic
TCAGGAAAATACTGAGGTGT+TGG 0.490567 6_4:-54088465 Msa0990960:CDS
ATCATTGCTTGAGTCAATGT+TGG 0.490619 6_4:+54087092 None:intergenic
TTCTATAAGATGTTCATGAC+AGG 0.491221 6_4:+54088358 None:intergenic
CAGGAAAATAAAAGTTTGGT+AGG 0.501234 6_4:-54087183 Msa0990960:CDS
TTAGGTGGCTGTGGTTGTTG+TGG 0.503036 6_4:+54091662 None:intergenic
AAAATTGGTGCAAGCAACAA+TGG 0.506950 6_4:-54087144 Msa0990960:CDS
CTCGCTGCATATAACCGTTG+AGG 0.524764 6_4:+54088591 None:intergenic
TGCTTGAGAAGTCGCTCGCA+AGG 0.526338 6_4:-54088820 Msa0990960:CDS
GGTGTTGGATTTGAGGGAAA+AGG 0.526687 6_4:-54088450 Msa0990960:CDS
GCGAAGGCATCTTCTGAAGC+AGG 0.527456 6_4:-54088125 Msa0990960:CDS
CACTCTGTCTCCAATAATTG+TGG 0.528178 6_4:+54091397 None:intergenic
AAATTGGTGCAAGCAACAAT+GGG 0.531780 6_4:-54087143 Msa0990960:CDS
GTGGATAAATAAGGTTGAAG+AGG 0.543952 6_4:+54091416 None:intergenic
TACAAGGTAAATAAACAAAA+GGG 0.544796 6_4:+54091354 None:intergenic
CCTTGAACTTCATAAAGAGC+TGG 0.546083 6_4:-54087964 Msa0990960:CDS
GAAGACCAACACCGAAACAA+GGG 0.549551 6_4:+54085966 None:intergenic
CTTAGAAAACTCATTTGAGA+AGG 0.549658 6_4:-54089317 Msa0990960:CDS
TGAGTGGTAGTTAAAAGACT+TGG 0.555312 6_4:-54091303 Msa0990960:five_prime_UTR
AGCTGAGAGTGCTGAAGCAA+AGG 0.555426 6_4:-54088282 Msa0990960:CDS
GTGATTAATTTGTTTATGAG+TGG 0.556854 6_4:-54091319 Msa0990960:five_prime_UTR
ATATACAATAAAGAATCTAA+AGG 0.557494 6_4:+54085815 None:intergenic
AGATCTTGAAAAGAAGTTAG+CGG 0.557654 6_4:-54088792 Msa0990960:CDS
TAATGCAACTAGCTACTGAA+AGG 0.557736 6_4:-54087827 Msa0990960:CDS
ACAAACAACAAAATTTCGCT+AGG 0.562458 6_4:+54085885 None:intergenic
TGTTAATGTTGACGATACTC+AGG 0.562953 6_4:-54088483 Msa0990960:CDS
GAAAACCAAAGATCAGAGAA+TGG 0.567239 6_4:-54088870 Msa0990960:CDS
ACGTACGGTTTAGGTGGCTG+TGG 0.570216 6_4:+54091653 None:intergenic
TAATTTCTGAACCAAGAAAG+AGG 0.571749 6_4:-54089563 Msa0990960:five_prime_UTR
AGAAGACCAACACCGAAACA+AGG 0.583522 6_4:+54085965 None:intergenic
CGAAATCCCCATTAACACCT+CGG 0.586371 6_4:+54088652 None:intergenic
TTGAGTTTGAGTTCTGGCAA+AGG 0.587297 6_4:+54091557 None:intergenic
ATACACAGGGGAAATGGGGA+AGG 0.589178 6_4:-54088936 Msa0990960:intron
ACCTCAGTCAAATGTCTGCA+CGG 0.591663 6_4:+54089184 None:intergenic
ACTCCGCTACACTGAACAAG+TGG 0.600856 6_4:-54088738 Msa0990960:CDS
GAAGCAGCAGAAGTTGTTTG+GGG 0.601416 6_4:-54088701 Msa0990960:CDS
AGATCTATCACTCCAACGTA+CGG 0.601440 6_4:+54091638 None:intergenic
ACAGTTAACTGAAACGAACA+TGG 0.602578 6_4:-54088255 Msa0990960:CDS
TCTAAGGTTTCAAAAGCTGA+AGG 0.603452 6_4:-54088035 Msa0990960:CDS
GCAGCTTCAGAAAAGTCTTG+TGG 0.605005 6_4:-54089071 Msa0990960:CDS
AATGCAACTAGCTACTGAAA+GGG 0.605712 6_4:-54087826 Msa0990960:CDS
TCATATACACAGGGGAAATG+GGG 0.609571 6_4:-54088940 Msa0990960:intron
GATGCTGCTTTAGAGAAGAA+CGG 0.611153 6_4:-54088515 Msa0990960:CDS
ACTCCAACGTACGGTTTAGG+TGG 0.615350 6_4:+54091647 None:intergenic
AAGACCAACACCGAAACAAG+GGG 0.623067 6_4:+54085967 None:intergenic
ATGCCACTTGTTCAGTGTAG+CGG 0.624346 6_4:+54088735 None:intergenic
GTAACTGAGTTCAACCTCAA+CGG 0.629441 6_4:-54088605 Msa0990960:CDS
CCTTAACAGAAATAGATCAT+CGG 0.629560 6_4:-54089444 Msa0990960:CDS
GTTCGCTTGAGAAGCAACTG+AGG 0.632474 6_4:-54088172 Msa0990960:CDS
TTCGCTTGAGAAGCAACTGA+GGG 0.639113 6_4:-54088171 Msa0990960:CDS
GCTTGAGAAGTCGCTCGCAA+GGG 0.645249 6_4:-54088819 Msa0990960:CDS
TATCCAACTACAGAATGCGA+AGG 0.657458 6_4:-54088141 Msa0990960:CDS
ATGCTACCGAGGTGTTAATG+GGG 0.669958 6_4:-54088658 Msa0990960:CDS
CAGCCACCTAAACCGTACGT+TGG 0.680335 6_4:-54091650 Msa0990960:five_prime_UTR
TGAAGCAGACAATGCTACCG+AGG 0.684617 6_4:-54088669 Msa0990960:CDS
GCCGTGCAGACATTTGACTG+AGG 0.706871 6_4:-54089185 Msa0990960:CDS
CGATACTCAGGAAAATACTG+AGG 0.718119 6_4:-54088471 Msa0990960:CDS
AGACCAACACCGAAACAAGG+GGG 0.733894 6_4:+54085968 None:intergenic

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! TAAAATTGTTGTAATATTTT+TGG - chr6_4:54086345-54086364 Msa0990960:intron 10.0%
!!! AAAATTGTTGTAATATTTTT+GGG - chr6_4:54086346-54086365 Msa0990960:intron 10.0%
!!! AATTTTTCTTTTTTAATGTT+AGG - chr6_4:54087131-54087150 Msa0990960:CDS 10.0%
!!! ATTTTTCTTTTTTAATGTTA+GGG - chr6_4:54087132-54087151 Msa0990960:CDS 10.0%
!!! ATAAGATAGAAATTTTATTT+TGG + chr6_4:54087814-54087833 None:intergenic 10.0%
!!! ATACTTTTCTTAAAAAATTT+AGG + chr6_4:54090992-54091011 None:intergenic 10.0%
!!! ATAAATCTTTTTTATATTGT+CGG + chr6_4:54091129-54091148 None:intergenic 10.0%
!!! AAATTGTTGTAATATTTTTG+GGG - chr6_4:54086347-54086366 Msa0990960:intron 15.0%
!!! TTATAATTGATGTTTTTTTG+TGG - chr6_4:54086372-54086391 Msa0990960:intron 15.0%
!!! TTTTTCTTTTTTAATGTTAG+GGG - chr6_4:54087133-54087152 Msa0990960:CDS 15.0%
!!! TTATATTTTTGTATCTCAAA+AGG + chr6_4:54087444-54087463 None:intergenic 15.0%
!! TTTATATAATACATAAAGTG+AGG - chr6_4:54087771-54087790 Msa0990960:intron 15.0%
!!! TTCTATGTTTTTATCTTTTA+TGG - chr6_4:54089655-54089674 Msa0990960:intron 15.0%
!!! TTTTCTTTTGAGAATAAAAA+TGG - chr6_4:54090650-54090669 Msa0990960:intron 15.0%
!! AAAAAGATTTATAACATGTT+TGG - chr6_4:54091137-54091156 Msa0990960:intron 15.0%
!! TATCATGTCTAATTTAAATT+GGG + chr6_4:54091191-54091210 None:intergenic 15.0%
!! ATATCATGTCTAATTTAAAT+TGG + chr6_4:54091192-54091211 None:intergenic 15.0%
!! ATATACAATAAAGAATCTAA+AGG + chr6_4:54091601-54091620 None:intergenic 15.0%
!! TACAAGGTAAATAAACAAAA+GGG + chr6_4:54086062-54086081 None:intergenic 20.0%
!! TGATAATTTGATGTTAACTT+CGG - chr6_4:54086209-54086228 Msa0990960:intron 20.0%
!!! TTTCTTTAATCTTTTGTTAC+CGG + chr6_4:54086732-54086751 None:intergenic 20.0%
!!! AGATAGAAATTTTATTTTGG+TGG + chr6_4:54087811-54087830 None:intergenic 20.0%
!! TGTTCTGTATATTTATCTAT+TGG - chr6_4:54088027-54088046 Msa0990960:CDS 20.0%
!!! AATTTTAATCGAACAACTTA+AGG - chr6_4:54088870-54088889 Msa0990960:CDS 20.0%
!!! TGAATATTTTCAGTTCAATT+TGG + chr6_4:54089749-54089768 None:intergenic 20.0%
!! AATTGAACTGAAAATATTCA+AGG - chr6_4:54089749-54089768 Msa0990960:intron 20.0%
!!! ATTTTCACAGTTTCTTAATA+TGG + chr6_4:54089894-54089913 None:intergenic 20.0%
!! TTGTTTCCATTAATCAATAA+CGG - chr6_4:54090133-54090152 Msa0990960:intron 20.0%
!! AAAACAGGAAAATAAAAGTT+TGG - chr6_4:54090226-54090245 Msa0990960:intron 20.0%
!! CATAATATCAACTAGTTAAA+AGG + chr6_4:54090430-54090449 None:intergenic 20.0%
!!! TTAACTAGTTGATATTATGT+TGG - chr6_4:54090431-54090450 Msa0990960:intron 20.0%
!!! TTTTTATGTGTAAGAATTCT+TGG + chr6_4:54091033-54091052 None:intergenic 20.0%
!! CTAATAATAGAAATCAAGAA+AGG + chr6_4:54091333-54091352 None:intergenic 20.0%
!! CTTTCTTGATTTCTATTATT+AGG - chr6_4:54091331-54091350 Msa0990960:five_prime_UTR 20.0%
! AAAAAATGAAGACTTGGAAT+GGG + chr6_4:54085937-54085956 None:intergenic 25.0%
! AAAGAGAAAAAATGAAGACT+TGG + chr6_4:54085943-54085962 None:intergenic 25.0%
! CCAATAATTGTGGATAAATA+AGG + chr6_4:54086009-54086028 None:intergenic 25.0%
!! CCTTATTTATCCACAATTAT+TGG - chr6_4:54086006-54086025 Msa0990960:CDS 25.0%
! CTACAAGGTAAATAAACAAA+AGG + chr6_4:54086063-54086082 None:intergenic 25.0%
!!! GTGATTAATTTGTTTATGAG+TGG - chr6_4:54086094-54086113 Msa0990960:intron 25.0%
!!! GTTTCATGTTTTTAACAGTA+TGG - chr6_4:54086291-54086310 Msa0990960:intron 25.0%
!!! ATGTTTTTAACAGTATGGTT+TGG - chr6_4:54086296-54086315 Msa0990960:intron 25.0%
!!! TGTTTTTTTGTGGATTTCTA+AGG - chr6_4:54086382-54086401 Msa0990960:intron 25.0%
! TTAAGTGTAATTACAAGTGT+CGG - chr6_4:54086587-54086606 Msa0990960:intron 25.0%
!! TTTTGTGTTAGAACAATAAC+CGG - chr6_4:54086710-54086729 Msa0990960:intron 25.0%
!! TTTCATAGTTTGTAACTTAG+CGG + chr6_4:54086798-54086817 None:intergenic 25.0%
! GGATTGTAATACGATATATA+TGG + chr6_4:54086991-54087010 None:intergenic 25.0%
!! TTGTTGTTGTTGTAATGTTA+GGG - chr6_4:54087301-54087320 Msa0990960:intron 25.0%
! AAACGACATAAATTAGTAGT+TGG + chr6_4:54087643-54087662 None:intergenic 25.0%
! TTTACAATTCAGCAATTAAG+TGG + chr6_4:54087748-54087767 None:intergenic 25.0%
!! TTTTAGTCATTCATATACAC+AGG - chr6_4:54088463-54088482 Msa0990960:CDS 25.0%
! TTTAGTCATTCATATACACA+GGG - chr6_4:54088464-54088483 Msa0990960:CDS 25.0%
!!! AATGCTTTCTTTTAGAGATT+CGG + chr6_4:54089094-54089113 None:intergenic 25.0%
! ATATGTTATACACAGCAATT+TGG - chr6_4:54089325-54089344 Msa0990960:CDS 25.0%
! TATGTTATACACAGCAATTT+GGG - chr6_4:54089326-54089345 Msa0990960:CDS 25.0%
! AATTGAAGAGCTAAAATCTA+AGG - chr6_4:54089362-54089381 Msa0990960:CDS 25.0%
! AACAAAGTTTATCATGGATT+TGG - chr6_4:54089563-54089582 Msa0990960:five_prime_UTR 25.0%
! TTGCATGAAATGATCATTAA+AGG + chr6_4:54089695-54089714 None:intergenic 25.0%
! GTTACATACATCAATGTATT+AGG + chr6_4:54089846-54089865 None:intergenic 25.0%
!! AAGATACCGTTATTGATTAA+TGG + chr6_4:54090142-54090161 None:intergenic 25.0%
! AAGTTAAAGGAGACTAAAAT+TGG - chr6_4:54090254-54090273 Msa0990960:intron 25.0%
! ACAAAATCATTTGATGAAGA+AGG - chr6_4:54090350-54090369 Msa0990960:intron 25.0%
! ATCAACTAGTTAAAAGGAAT+AGG + chr6_4:54090424-54090443 None:intergenic 25.0%
! TTTCAAATTATTAGCTGTGT+CGG - chr6_4:54090559-54090578 Msa0990960:intron 25.0%
! AAGAAAAGAACATAAAACCA+TGG + chr6_4:54090637-54090656 None:intergenic 25.0%
! ATTGTTCAATCATGGAAAAT+TGG - chr6_4:54090930-54090949 Msa0990960:intron 25.0%
! AAAATTTAGGCATGATAACT+AGG + chr6_4:54090979-54090998 None:intergenic 25.0%
! TAAGAATTCTTGGAAAAGAT+GGG + chr6_4:54091023-54091042 None:intergenic 25.0%
! TCTTGATTTCTATTATTAGG+TGG - chr6_4:54091334-54091353 Msa0990960:five_prime_UTR 25.0%
! CTTGATTTCTATTATTAGGT+GGG - chr6_4:54091335-54091354 Msa0990960:five_prime_UTR 25.0%
! AATATGTTTCTCCAATTTGT+AGG + chr6_4:54091404-54091423 None:intergenic 25.0%
!!! GGAGAAACATATTTCTTTTT+TGG - chr6_4:54091411-54091430 Msa0990960:five_prime_UTR 25.0%
! TCCTTTAAATTCTTCTTTGA+AGG - chr6_4:54091571-54091590 Msa0990960:five_prime_UTR 25.0%
! CCTTTAAATTCTTCTTTGAA+GGG - chr6_4:54091572-54091591 Msa0990960:five_prime_UTR 25.0%
AAAAATGAAGACTTGGAATG+GGG + chr6_4:54085936-54085955 None:intergenic 30.0%
GAAAAAATGAAGACTTGGAA+TGG + chr6_4:54085938-54085957 None:intergenic 30.0%
!!! AAAGGGTATCTTCTTTTTTG+TGG + chr6_4:54086045-54086064 None:intergenic 30.0%
!!! TCACTTTTTCACATTCTACA+AGG + chr6_4:54086078-54086097 None:intergenic 30.0%
TACCTTTCTATAAATGCTTC+TGG + chr6_4:54086165-54086184 None:intergenic 30.0%
! GAAGCATTTATAGAAAGGTA+AGG - chr6_4:54086165-54086184 Msa0990960:intron 30.0%
! TTCGGAACTTTCTTTATTTG+AGG - chr6_4:54086227-54086246 Msa0990960:intron 30.0%
!! ATTGTTGTTTGTTATTGCTG+TGG - chr6_4:54086266-54086285 Msa0990960:intron 30.0%
!! TTTTGTGGATTTCTAAGGAT+TGG - chr6_4:54086387-54086406 Msa0990960:intron 30.0%
TAGTGACAATTTATGAAGCA+CGG + chr6_4:54086639-54086658 None:intergenic 30.0%
GTTCTAACACAAAACAATGT+AGG + chr6_4:54086704-54086723 None:intergenic 30.0%
TATGAAACACAGAAACTCTT+CGG - chr6_4:54086811-54086830 Msa0990960:intron 30.0%
AGTCAAATTATTAGCTGTGT+CGG - chr6_4:54086920-54086939 Msa0990960:intron 30.0%
! GTTGTTGTTGTTGTAATGTT+AGG - chr6_4:54087300-54087319 Msa0990960:intron 30.0%
! TGTTGTTGTTGTAATGTTAG+GGG - chr6_4:54087302-54087321 Msa0990960:intron 30.0%
CAACCGTTAATAATCCATTT+GGG - chr6_4:54087501-54087520 Msa0990960:intron 30.0%
!! CAACCCAAATGGATTATTAA+CGG + chr6_4:54087507-54087526 None:intergenic 30.0%
TTTCTTGGTTCAGAAATTAG+AGG + chr6_4:54087849-54087868 None:intergenic 30.0%
TAATTTCTGAACCAAGAAAG+AGG - chr6_4:54087850-54087869 Msa0990960:CDS 30.0%
CCTTAACAGAAATAGATCAT+CGG - chr6_4:54087969-54087988 Msa0990960:CDS 30.0%
CTTAGAAAACTCATTTGAGA+AGG - chr6_4:54088096-54088115 Msa0990960:CDS 30.0%
! GACTGAGGTTTTCTTTATAA+TGG - chr6_4:54088243-54088262 Msa0990960:CDS 30.0%
TAATTGCTTCTTAGACTCTT+CGG + chr6_4:54088287-54088306 None:intergenic 30.0%
GCAATTACAACAACAGTTAT+TGG - chr6_4:54088300-54088319 Msa0990960:CDS 30.0%
TCAACTTACAATTCTCATGT+TGG + chr6_4:54088372-54088391 None:intergenic 30.0%
TTAGTCATTCATATACACAG+GGG - chr6_4:54088465-54088484 Msa0990960:CDS 30.0%
AGATCTTGAAAAGAAGTTAG+CGG - chr6_4:54088621-54088640 Msa0990960:CDS 30.0%
! TGAACAAGTGGCATTTTATA+TGG - chr6_4:54088687-54088706 Msa0990960:CDS 30.0%
! GGGATTTCGAAAAGTATAAT+GGG - chr6_4:54088775-54088794 Msa0990960:CDS 30.0%
! AGAAGAACGAAAGAATTTTG+AGG - chr6_4:54088999-54089018 Msa0990960:intron 30.0%
TTCTATAAGATGTTCATGAC+AGG + chr6_4:54089058-54089077 None:intergenic 30.0%
AAGAGCTGAACTTTCTTAAA+GGG - chr6_4:54089190-54089209 Msa0990960:CDS 30.0%
!! ACTTGATAATTTTGTACTGC+TGG + chr6_4:54089523-54089542 None:intergenic 30.0%
TACCAGAACAAAGTTTATCA+TGG - chr6_4:54089557-54089576 Msa0990960:five_prime_UTR 30.0%
ATCCATGATAAACTTTGTTC+TGG + chr6_4:54089562-54089581 None:intergenic 30.0%
AACATAGAACTTATTTGACG+AGG + chr6_4:54089644-54089663 None:intergenic 30.0%
! TCTTTTATGGAATCTCAGTT+TGG - chr6_4:54089668-54089687 Msa0990960:intron 30.0%
! TTTTCAGTTCAATTTGGACT+TGG + chr6_4:54089743-54089762 None:intergenic 30.0%
GAAAGCTAAACATGAAGATA+AGG + chr6_4:54090057-54090076 None:intergenic 30.0%
!!! TTTCCTTGTTGTTTTACTCT+TGG - chr6_4:54090073-54090092 Msa0990960:intron 30.0%
CAGGAAAATAAAAGTTTGGT+AGG - chr6_4:54090230-54090249 Msa0990960:intron 30.0%
AAGTTTGGTAGGAAAGTTAA+AGG - chr6_4:54090241-54090260 Msa0990960:intron 30.0%
ATCATTTGATGAAGAAGGAA+TGG - chr6_4:54090355-54090374 Msa0990960:intron 30.0%
ACACTTCAATAAAACCTTTC+AGG - chr6_4:54090379-54090398 Msa0990960:intron 30.0%
! CTAGTTGATATTATGTTGGT+AGG - chr6_4:54090435-54090454 Msa0990960:intron 30.0%
TTCAGTGTAATTACAAGTGT+CGG + chr6_4:54090528-54090547 None:intergenic 30.0%
TAAACTATGAAGAACGGATA+CGG + chr6_4:54090596-54090615 None:intergenic 30.0%
!! TGTTTACAAAAGCACTGAAT+CGG + chr6_4:54090815-54090834 None:intergenic 30.0%
TATGTTAGAATATGCAACGA+AGG + chr6_4:54090846-54090865 None:intergenic 30.0%
TTCGTTGCATATTCTAACAT+AGG - chr6_4:54090845-54090864 Msa0990960:intron 30.0%
!!! TTGTCATTTTATCAGAGAGA+TGG + chr6_4:54090895-54090914 None:intergenic 30.0%
GTAAGAATTCTTGGAAAAGA+TGG + chr6_4:54091024-54091043 None:intergenic 30.0%
! GACATGATATTTATCGCTTT+TGG - chr6_4:54091202-54091221 Msa0990960:intron 30.0%
! CGCAAAATCATATTTTGTCT+TGG - chr6_4:54091291-54091310 Msa0990960:five_prime_UTR 30.0%
!! AATTTTTATCCCCCTTGTTT+CGG - chr6_4:54091436-54091455 Msa0990960:five_prime_UTR 30.0%
ACAAACAACAAAATTTCGCT+AGG + chr6_4:54091531-54091550 None:intergenic 30.0%
CCCTTCAAAGAAGAATTTAA+AGG + chr6_4:54091575-54091594 None:intergenic 30.0%
GAAGAACAAAATTGAGAGAC+AGG + chr6_4:54085814-54085833 None:intergenic 35.0%
! TTGAGTTTGAGTTTGAGTTC+TGG + chr6_4:54085865-54085884 None:intergenic 35.0%
TGAAGAGGAAGAAGTCAAAA+TGG + chr6_4:54085985-54086004 None:intergenic 35.0%
GTGGATAAATAAGGTTGAAG+AGG + chr6_4:54086000-54086019 None:intergenic 35.0%
TGAGTGGTAGTTAAAAGACT+TGG - chr6_4:54086110-54086129 Msa0990960:intron 35.0%
!! GTCCAGAAGCATTTATAGAA+AGG - chr6_4:54086160-54086179 Msa0990960:intron 35.0%
! GGATTTCTAAGGATTGGATT+TGG - chr6_4:54086393-54086412 Msa0990960:intron 35.0%
TGATTATGATTGTTGTGTGC+TGG - chr6_4:54086422-54086441 Msa0990960:intron 35.0%
!! GCTGGATTTGTTACAAAACT+AGG - chr6_4:54086440-54086459 Msa0990960:intron 35.0%
CTTAACAACAGAAACCACAT+GGG + chr6_4:54086468-54086487 None:intergenic 35.0%
TCTTAACAACAGAAACCACA+TGG + chr6_4:54086469-54086488 None:intergenic 35.0%
GAAATGCAAATCGCAAACAA+TGG - chr6_4:54086748-54086767 Msa0990960:intron 35.0%
GTTTGTAACCTATGAAGTAC+GGG + chr6_4:54086969-54086988 None:intergenic 35.0%
GGTTTGTAACCTATGAAGTA+CGG + chr6_4:54086970-54086989 None:intergenic 35.0%
!! TAGTCCCAACTATTTGTTGT+GGG + chr6_4:54087064-54087083 None:intergenic 35.0%
! TTAGTCCCAACTATTTGTTG+TGG + chr6_4:54087065-54087084 None:intergenic 35.0%
! GATTCGACAAAGTTTTACGT+TGG + chr6_4:54087227-54087246 None:intergenic 35.0%
TTTGTCGAATCTCTATGACA+TGG - chr6_4:54087236-54087255 Msa0990960:intron 35.0%
!! CCAAATGGATTATTAACGGT+TGG + chr6_4:54087503-54087522 None:intergenic 35.0%
CCAACCGTTAATAATCCATT+TGG - chr6_4:54087500-54087519 Msa0990960:intron 35.0%
CGTTAATAATCCATTTGGGT+TGG - chr6_4:54087505-54087524 Msa0990960:intron 35.0%
! CTAAGTTAGCCTATCCAAAT+TGG + chr6_4:54087601-54087620 None:intergenic 35.0%
AGAAAAACTCTACTCACTCA+AGG - chr6_4:54087895-54087914 Msa0990960:CDS 35.0%
GAAAAACTCTACTCACTCAA+GGG - chr6_4:54087896-54087915 Msa0990960:CDS 35.0%
GCAAGGATATATCAAGATCT+TGG + chr6_4:54087946-54087965 None:intergenic 35.0%
! TATTTCTGTTAAGGCTTGCA+AGG + chr6_4:54087963-54087982 None:intergenic 35.0%
!! CCGATGATCTATTTCTGTTA+AGG + chr6_4:54087972-54087991 None:intergenic 35.0%
! AAATGAGTTTTCTAAGTCGC+AGG + chr6_4:54088092-54088111 None:intergenic 35.0%
ATGATGTTTGATCTGTTGTC+TGG - chr6_4:54088121-54088140 Msa0990960:CDS 35.0%
! GTCTGGCATTTTAGATTTTG+AGG - chr6_4:54088138-54088157 Msa0990960:CDS 35.0%
AACAGAGCTTGACAATTTCA+TGG - chr6_4:54088162-54088181 Msa0990960:CDS 35.0%
ATTCATATACACAGGGGAAA+TGG - chr6_4:54088471-54088490 Msa0990960:CDS 35.0%
TTCATATACACAGGGGAAAT+GGG - chr6_4:54088472-54088491 Msa0990960:CDS 35.0%
GAAAACCAAAGATCAGAGAA+TGG - chr6_4:54088543-54088562 Msa0990960:CDS 35.0%
TTCTACCATTCTCTGATCTT+TGG + chr6_4:54088551-54088570 None:intergenic 35.0%
! GGGGATTTCGAAAAGTATAA+TGG - chr6_4:54088774-54088793 Msa0990960:CDS 35.0%
TGTTAATGTTGACGATACTC+AGG - chr6_4:54088930-54088949 Msa0990960:CDS 35.0%
ACAGTTAACTGAAACGAACA+TGG - chr6_4:54089158-54089177 Msa0990960:CDS 35.0%
GAAGAGCTGAACTTTCTTAA+AGG - chr6_4:54089189-54089208 Msa0990960:CDS 35.0%
! ATACACAGCAATTTGGGATA+TGG - chr6_4:54089332-54089351 Msa0990960:CDS 35.0%
! TCTAAGGTTTCAAAAGCTGA+AGG - chr6_4:54089378-54089397 Msa0990960:CDS 35.0%
GCTTTGCATGAAAACATCAT+TGG - chr6_4:54089491-54089510 Msa0990960:CDS 35.0%
TAATGCAACTAGCTACTGAA+AGG - chr6_4:54089586-54089605 Msa0990960:intron 35.0%
AATGCAACTAGCTACTGAAA+GGG - chr6_4:54089587-54089606 Msa0990960:intron 35.0%
! GGACTTGGTATACAAAGTTA+AGG + chr6_4:54089728-54089747 None:intergenic 35.0%
! ACTCATTAGAGCATCTTCAA+TGG - chr6_4:54089809-54089828 Msa0990960:intron 35.0%
! CTCATTAGAGCATCTTCAAT+GGG - chr6_4:54089810-54089829 Msa0990960:intron 35.0%
ACTCCAAGAGTAAAACAACA+AGG + chr6_4:54090079-54090098 None:intergenic 35.0%
!!! TGTTGTTTTACTCTTGGAGT+TGG - chr6_4:54090079-54090098 Msa0990960:intron 35.0%
! AACTGGTTCAGAATAAGCAA+AGG + chr6_4:54090174-54090193 None:intergenic 35.0%
AAAATTGGTGCAAGCAACAA+TGG - chr6_4:54090269-54090288 Msa0990960:intron 35.0%
AAATTGGTGCAAGCAACAAT+GGG - chr6_4:54090270-54090289 Msa0990960:intron 35.0%
ATCATTGCTTGAGTCAATGT+TGG + chr6_4:54090324-54090343 None:intergenic 35.0%
TTCAATAAAACCTTTCAGGC+AGG - chr6_4:54090383-54090402 Msa0990960:intron 35.0%
AAAAAAGATACCTGCCTGAA+AGG + chr6_4:54090396-54090415 None:intergenic 35.0%
!!! GGCTTTATTTTCATGAAGCA+CGG - chr6_4:54090456-54090475 Msa0990960:intron 35.0%
ATCCGTTCTTCATAGTTTAC+TGG - chr6_4:54090597-54090616 Msa0990960:intron 35.0%
GTCCAGTAAACTATGAAGAA+CGG + chr6_4:54090602-54090621 None:intergenic 35.0%
TGGACAATCAACTATATCCA+TGG - chr6_4:54090617-54090636 Msa0990960:intron 35.0%
AGATAACTATCCCATTGCTT+AGG - chr6_4:54090689-54090708 Msa0990960:intron 35.0%
CAAAGCATATCCTAAGCAAT+GGG + chr6_4:54090702-54090721 None:intergenic 35.0%
TTATTATGCATGCTCCAACT+GGG + chr6_4:54090755-54090774 None:intergenic 35.0%
ATTATTATGCATGCTCCAAC+TGG + chr6_4:54090756-54090775 None:intergenic 35.0%
!! GTTTACAAAAGCACTGAATC+GGG + chr6_4:54090814-54090833 None:intergenic 35.0%
TAGAATATGCAACGAAGGAA+TGG + chr6_4:54090841-54090860 None:intergenic 35.0%
TTTAGGCATGATAACTAGGT+TGG + chr6_4:54090975-54090994 None:intergenic 35.0%
TTCTTGGAAAAGATGGGATT+TGG + chr6_4:54091017-54091036 None:intergenic 35.0%
AAAAGTGAAGTTAAGCGCTA+TGG + chr6_4:54091071-54091090 None:intergenic 35.0%
! GATTTTGCCACCACATTTTT+TGG - chr6_4:54091097-54091116 Msa0990960:intron 35.0%
GTATAGACCAAAAAATGTGG+TGG + chr6_4:54091107-54091126 None:intergenic 35.0%
TCGGTATAGACCAAAAAATG+TGG + chr6_4:54091110-54091129 None:intergenic 35.0%
TAACATGTTTGGATCAGCTT+TGG - chr6_4:54091148-54091167 Msa0990960:intron 35.0%
AACATGTTTGGATCAGCTTT+GGG - chr6_4:54091149-54091168 Msa0990960:intron 35.0%
! TTTTGCGATAGTCTAAGCTA+AGG + chr6_4:54091278-54091297 None:intergenic 35.0%
CAGCAAATAAGCCTACAAAT+TGG - chr6_4:54091390-54091409 Msa0990960:five_prime_UTR 35.0%
AGATCTATCACTCCAACGTA+CGG + chr6_4:54085778-54085797 None:intergenic 40.0%
! TTGAGTTTGAGTTCTGGCAA+AGG + chr6_4:54085859-54085878 None:intergenic 40.0%
CACTCTGTCTCCAATAATTG+TGG + chr6_4:54086019-54086038 None:intergenic 40.0%
AAATGCTTCTGGACTCTATC+TGG + chr6_4:54086154-54086173 None:intergenic 40.0%
TACAAAACTAGGATCCCATG+TGG - chr6_4:54086451-54086470 Msa0990960:intron 40.0%
ACTTCATTTGCCATGAAGCA+CGG - chr6_4:54086500-54086519 Msa0990960:intron 40.0%
!! GTAATTACAAGTGTCGGTGT+CGG - chr6_4:54086593-54086612 Msa0990960:intron 40.0%
TGTCACTATCCAAGATCCAT+TGG - chr6_4:54086651-54086670 Msa0990960:intron 40.0%
GTCACTATCCAAGATCCATT+GGG - chr6_4:54086652-54086671 Msa0990960:intron 40.0%
TAACCTATGAAGTACGGGTA+CGG + chr6_4:54086964-54086983 None:intergenic 40.0%
!! TCAGGGGTATCGTTGTAATT+TGG + chr6_4:54087012-54087031 None:intergenic 40.0%
!! AGTCCCAACTATTTGTTGTG+GGG + chr6_4:54087063-54087082 None:intergenic 40.0%
AAAATGGAGAGGGTTGTGTT+AGG - chr6_4:54087192-54087211 Msa0990960:CDS 40.0%
! TGTTAGGGGTTAGTAGTGTT+AGG - chr6_4:54087316-54087335 Msa0990960:intron 40.0%
!! GTGTTAGGTGTTGTTAGTGA+TGG - chr6_4:54087331-54087350 Msa0990960:intron 40.0%
TTAACGGTTGGCAATTAGCA+TGG + chr6_4:54087491-54087510 None:intergenic 40.0%
GATTCTTCCTGAAGCCAATT+TGG - chr6_4:54087584-54087603 Msa0990960:intron 40.0%
TTCCTGAAGCCAATTTGGAT+AGG - chr6_4:54087589-54087608 Msa0990960:intron 40.0%
TAATGGTGTCCATTGATGCT+TGG - chr6_4:54087719-54087738 Msa0990960:intron 40.0%
CATTTCTTGGACCTCTTTCT+TGG + chr6_4:54087864-54087883 None:intergenic 40.0%
CAAGAAAGAGGTCCAAGAAA+TGG - chr6_4:54087862-54087881 Msa0990960:CDS 40.0%
CTAAAGCTGCATCCATTTCT+TGG + chr6_4:54087877-54087896 None:intergenic 40.0%
TCATATACACAGGGGAAATG+GGG - chr6_4:54088473-54088492 Msa0990960:CDS 40.0%
AAGAAGCAGCAGAAGTTGTT+TGG - chr6_4:54088710-54088729 Msa0990960:CDS 40.0%
AGAAGCAGCAGAAGTTGTTT+GGG - chr6_4:54088711-54088730 Msa0990960:CDS 40.0%
! AATGCTACCGAGGTGTTAAT+GGG - chr6_4:54088754-54088773 Msa0990960:CDS 40.0%
TGAGGTTGAACTCAGTTACT+TGG + chr6_4:54088807-54088826 None:intergenic 40.0%
GTAACTGAGTTCAACCTCAA+CGG - chr6_4:54088808-54088827 Msa0990960:CDS 40.0%
!! GATGCTGCTTTAGAGAAGAA+CGG - chr6_4:54088898-54088917 Msa0990960:CDS 40.0%
!! ATGCTGCTTTAGAGAAGAAC+GGG - chr6_4:54088899-54088918 Msa0990960:CDS 40.0%
CGATACTCAGGAAAATACTG+AGG - chr6_4:54088942-54088961 Msa0990960:intron 40.0%
TCAGGAAAATACTGAGGTGT+TGG - chr6_4:54088948-54088967 Msa0990960:intron 40.0%
!! ATACTGAGGTGTTGGATTTG+AGG - chr6_4:54088956-54088975 Msa0990960:intron 40.0%
!! TACTGAGGTGTTGGATTTGA+GGG - chr6_4:54088957-54088976 Msa0990960:intron 40.0%
AGTACTGCCGAGAAAAAAGT+CGG - chr6_4:54089219-54089238 Msa0990960:CDS 40.0%
!!! AAGCGAACCGACTTTTTTCT+CGG + chr6_4:54089229-54089248 None:intergenic 40.0%
TATCCAACTACAGAATGCGA+AGG - chr6_4:54089272-54089291 Msa0990960:CDS 40.0%
CCAGCTCTTTATGAAGTTCA+AGG + chr6_4:54089452-54089471 None:intergenic 40.0%
CCTTGAACTTCATAAAGAGC+TGG - chr6_4:54089449-54089468 Msa0990960:CDS 40.0%
! AAGGGAGCGCATTAATAAAC+AGG - chr6_4:54089605-54089624 Msa0990960:intron 40.0%
!!! GTTTTAAAGCATCTAGCTGC+AGG + chr6_4:54090211-54090230 None:intergenic 40.0%
!! GCAGCTAGATGCTTTAAAAC+AGG - chr6_4:54090211-54090230 Msa0990960:intron 40.0%
GCAAAGCATATCCTAAGCAA+TGG + chr6_4:54090703-54090722 None:intergenic 40.0%
CAACGTGCATTGTTCAATCA+TGG - chr6_4:54090922-54090941 Msa0990960:intron 40.0%
!! GCTTAACTTCACTTTTGCAC+TGG - chr6_4:54091075-54091094 Msa0990960:intron 40.0%
CGATAGTCTAAGCTAAGGTT+TGG + chr6_4:54091273-54091292 None:intergenic 40.0%
ATCACTCCAACGTACGGTTT+AGG + chr6_4:54085772-54085791 None:intergenic 45.0%
TATGAAGCACGGACACTCTT+TGG + chr6_4:54086628-54086647 None:intergenic 45.0%
ACTCATGACCCAATGGATCT+TGG + chr6_4:54086663-54086682 None:intergenic 45.0%
CTAACACACTCATGACCCAA+TGG + chr6_4:54086670-54086689 None:intergenic 45.0%
CATTGGGTCATGAGTGTGTT+AGG - chr6_4:54086668-54086687 Msa0990960:intron 45.0%
ACACAGAAACTCTTCGGATC+AGG - chr6_4:54086817-54086836 Msa0990960:intron 45.0%
TCCCCCCACAACAAATAGTT+GGG - chr6_4:54087057-54087076 Msa0990960:CDS 45.0%
!! TCCCAACTATTTGTTGTGGG+GGG + chr6_4:54087061-54087080 None:intergenic 45.0%
!! GTCCCAACTATTTGTTGTGG+GGG + chr6_4:54087062-54087081 None:intergenic 45.0%
! ACAACCCTCTCCATTTTACC+CGG + chr6_4:54087189-54087208 None:intergenic 45.0%
!! AAGTTTTACGTTGGCTGTCG+AGG + chr6_4:54087218-54087237 None:intergenic 45.0%
AACGCCTTATCCCACTAAGT+GGG + chr6_4:54087280-54087299 None:intergenic 45.0%
! GAGTTCGTCTGCACTTTTCT+AGG + chr6_4:54087413-54087432 None:intergenic 45.0%
AAAGTGCAGACGAACTCTAG+AGG - chr6_4:54087416-54087435 Msa0990960:intron 45.0%
GATCGCAAGTCAATACCATC+AGG + chr6_4:54087531-54087550 None:intergenic 45.0%
! TAAGAGTGTGTTGCTCCTCA+AGG - chr6_4:54087551-54087570 Msa0990960:intron 45.0%
GAATCAAACCTGAGACCTTG+AGG + chr6_4:54087569-54087588 None:intergenic 45.0%
! AGCCTATCCAAATTGGCTTC+AGG + chr6_4:54087594-54087613 None:intergenic 45.0%
AAGTGGATGCCAAGCATCAA+TGG + chr6_4:54087731-54087750 None:intergenic 45.0%
ATGCAAGTTCACCAGCTTCT+CGG + chr6_4:54088008-54088027 None:intergenic 45.0%
ACCTCAGTCAAATGTCTGCA+CGG + chr6_4:54088232-54088251 None:intergenic 45.0%
GCAGCTTCAGAAAAGTCTTG+TGG - chr6_4:54088342-54088361 Msa0990960:CDS 45.0%
! ATGCCACTTGTTCAGTGTAG+CGG + chr6_4:54088681-54088700 None:intergenic 45.0%
GAAGCAGCAGAAGTTGTTTG+GGG - chr6_4:54088712-54088731 Msa0990960:CDS 45.0%
! CAATGCTACCGAGGTGTTAA+TGG - chr6_4:54088753-54088772 Msa0990960:CDS 45.0%
! ATGCTACCGAGGTGTTAATG+GGG - chr6_4:54088755-54088774 Msa0990960:CDS 45.0%
CGAAATCCCCATTAACACCT+CGG + chr6_4:54088764-54088783 None:intergenic 45.0%
! GGTGTTGGATTTGAGGGAAA+AGG - chr6_4:54088963-54088982 Msa0990960:intron 45.0%
TTCGCTTGAGAAGCAACTGA+GGG - chr6_4:54089242-54089261 Msa0990960:CDS 45.0%
ATGCCTTCGCATTCTGTAGT+TGG + chr6_4:54089278-54089297 None:intergenic 45.0%
AGGAAGAACGTAGTGGTAAC+TGG + chr6_4:54090191-54090210 None:intergenic 45.0%
!! TACAAAAGCACTGAATCGGG+TGG + chr6_4:54090811-54090830 None:intergenic 45.0%
AAGACCAACACCGAAACAAG+GGG + chr6_4:54091449-54091468 None:intergenic 45.0%
GAAGACCAACACCGAAACAA+GGG + chr6_4:54091450-54091469 None:intergenic 45.0%
AGAAGACCAACACCGAAACA+AGG + chr6_4:54091451-54091470 None:intergenic 45.0%
!!! ATATTTTTTTAGTTTAATAA+TGG - chr6_4:54087702-54087721 Msa0990960:intron 5.0%
!!! AATTACATTAATTATTTTTT+AGG + chr6_4:54091648-54091667 None:intergenic 5.0%
ACTCCAACGTACGGTTTAGG+TGG + chr6_4:54085769-54085788 None:intergenic 50.0%
TTTGCCATGAAGCACGGACA+CGG - chr6_4:54086506-54086525 Msa0990960:intron 50.0%
ACCGGACACAAACACTGACA+CGG - chr6_4:54086531-54086550 Msa0990960:intron 50.0%
!! TGCAAGTGTCGATGTCGTGT+CGG + chr6_4:54086878-54086897 None:intergenic 50.0%
ATGAAGTACGGGTACGGACA+CGG + chr6_4:54086958-54086977 None:intergenic 50.0%
TGTCCGTACCCGTACTTCAT+AGG - chr6_4:54086958-54086977 Msa0990960:intron 50.0%
!! ACTATTTGTTGTGGGGGGAG+TGG + chr6_4:54087056-54087075 None:intergenic 50.0%
CTCCCCCCACAACAAATAGT+TGG - chr6_4:54087056-54087075 Msa0990960:CDS 50.0%
! AGGGGTTAGTAATCCTGCCA+AGG - chr6_4:54087151-54087170 Msa0990960:CDS 50.0%
GTTAGTAATCCTGCCAAGGC+CGG - chr6_4:54087155-54087174 Msa0990960:CDS 50.0%
! TCTCCATTTTACCCGGGCTT+GGG + chr6_4:54087182-54087201 None:intergenic 50.0%
AAGCCCGGGTAAAATGGAGA+GGG - chr6_4:54087182-54087201 Msa0990960:CDS 50.0%
! CAACCCTCTCCATTTTACCC+GGG + chr6_4:54087188-54087207 None:intergenic 50.0%
CTTATCCCACTAAGTGGGGT+CGG + chr6_4:54087275-54087294 None:intergenic 50.0%
ACGCCTTATCCCACTAAGTG+GGG + chr6_4:54087279-54087298 None:intergenic 50.0%
CAACGCCTTATCCCACTAAG+TGG + chr6_4:54087281-54087300 None:intergenic 50.0%
!! ATCCATTTGGGTTGGCCTGA+TGG - chr6_4:54087513-54087532 Msa0990960:intron 50.0%
TACCATCAGGCCAACCCAAA+TGG + chr6_4:54087518-54087537 None:intergenic 50.0%
AGCCTATTCTTCCGAGAAGC+TGG - chr6_4:54087994-54088013 Msa0990960:CDS 50.0%
CACCAGCTTCTCGGAAGAAT+AGG + chr6_4:54087999-54088018 None:intergenic 50.0%
ATACACAGGGGAAATGGGGA+AGG - chr6_4:54088477-54088496 Msa0990960:CDS 50.0%
ACTCCGCTACACTGAACAAG+TGG - chr6_4:54088675-54088694 Msa0990960:CDS 50.0%
TGAAGCAGACAATGCTACCG+AGG - chr6_4:54088744-54088763 Msa0990960:CDS 50.0%
CTCGCTGCATATAACCGTTG+AGG + chr6_4:54088825-54088844 None:intergenic 50.0%
!! AGCTGAGAGTGCTGAAGCAA+AGG - chr6_4:54089131-54089150 Msa0990960:CDS 50.0%
GTTCGCTTGAGAAGCAACTG+AGG - chr6_4:54089241-54089260 Msa0990960:CDS 50.0%
TAGCTGCAGGAAGAACGTAG+TGG + chr6_4:54090198-54090217 None:intergenic 50.0%
! TATCCCCCTTGTTTCGGTGT+TGG - chr6_4:54091442-54091461 Msa0990960:five_prime_UTR 50.0%
AGACCAACACCGAAACAAGG+GGG + chr6_4:54091448-54091467 None:intergenic 50.0%
!! GGTGTTGGTCTTCTGCTTGT+TGG - chr6_4:54091457-54091476 Msa0990960:five_prime_UTR 50.0%
ACGTACGGTTTAGGTGGCTG+TGG + chr6_4:54085763-54085782 None:intergenic 55.0%
CAGCCACCTAAACCGTACGT+TGG - chr6_4:54085763-54085782 Msa0990960:three_prime_UTR 55.0%
GCCGTGTCAGTGTTTGTGTC+CGG + chr6_4:54086535-54086554 None:intergenic 55.0%
GATCAGGCGTGTTCCAGTGT+CGG - chr6_4:54086833-54086852 Msa0990960:intron 55.0%
ACACGACACATGTCCGACAC+TGG + chr6_4:54086849-54086868 None:intergenic 55.0%
! TGTCGATGTCGTGTCGGTGT+CGG + chr6_4:54086872-54086891 None:intergenic 55.0%
! ATTAGCTGTGTCGGCGTGTC+CGG - chr6_4:54086929-54086948 Msa0990960:intron 55.0%
ATACCCCTGAACCGTACCAC+AGG - chr6_4:54087022-54087041 Msa0990960:intron 55.0%
TACCCCTGAACCGTACCACA+GGG - chr6_4:54087023-54087042 Msa0990960:intron 55.0%
TGGTGATTGCCCCTGTGGTA+CGG + chr6_4:54087036-54087055 None:intergenic 55.0%
! ATTTTACCCGGGCTTGGGAC+CGG + chr6_4:54087177-54087196 None:intergenic 55.0%
! CTCTCCATTTTACCCGGGCT+TGG + chr6_4:54087183-54087202 None:intergenic 55.0%
CAAGCCCGGGTAAAATGGAG+AGG - chr6_4:54087181-54087200 Msa0990960:CDS 55.0%
ACTAAGTGGGGTCGGCTACA+TGG + chr6_4:54087267-54087286 None:intergenic 55.0%
ATGTAGCCGACCCCACTTAG+TGG - chr6_4:54087266-54087285 Msa0990960:intron 55.0%
TGTAGCCGACCCCACTTAGT+GGG - chr6_4:54087267-54087286 Msa0990960:intron 55.0%
CGACCCCACTTAGTGGGATA+AGG - chr6_4:54087273-54087292 Msa0990960:intron 55.0%
! GTGTTGCTCCTCAAGGTCTC+AGG - chr6_4:54087558-54087577 Msa0990960:intron 55.0%
GCCGTGCAGACATTTGACTG+AGG - chr6_4:54088228-54088247 Msa0990960:CDS 55.0%
TGCTTGAGAAGTCGCTCGCA+AGG - chr6_4:54088593-54088612 Msa0990960:CDS 55.0%
GCTTGAGAAGTCGCTCGCAA+GGG - chr6_4:54088594-54088613 Msa0990960:CDS 55.0%
!! GCGAAGGCATCTTCTGAAGC+AGG - chr6_4:54089288-54089307 Msa0990960:CDS 55.0%
TCATGAAGCACGGACACTCC+TGG - chr6_4:54090466-54090485 Msa0990960:intron 55.0%
CATGAAGCACGGACACTCCT+GGG - chr6_4:54090467-54090486 Msa0990960:intron 55.0%
ATGAAGCACGGACACTCCTG+GGG - chr6_4:54090468-54090487 Msa0990960:intron 55.0%
GTGTCCGTGTCCGTGCTTCA+TGG + chr6_4:54086513-54086532 None:intergenic 60.0%
TGAAGCACGGACACGGACAC+CGG - chr6_4:54086513-54086532 Msa0990960:intron 60.0%
ACCCCTGAACCGTACCACAG+GGG - chr6_4:54087024-54087043 Msa0990960:intron 60.0%
TGCCCCTGTGGTACGGTTCA+GGG + chr6_4:54087029-54087048 None:intergenic 60.0%
TTGCCCCTGTGGTACGGTTC+AGG + chr6_4:54087030-54087049 None:intergenic 60.0%
GGTCCCAAGCCCGGGTAAAA+TGG - chr6_4:54087176-54087195 Msa0990960:CDS 60.0%
AGTGGGGTCGGCTACATGGA+TGG + chr6_4:54087263-54087282 None:intergenic 60.0%
TCCTGGGGTTAGACGTGTCG+CGG - chr6_4:54090483-54090502 Msa0990960:intron 60.0%
GGTTAGACGTGTCGCGGTGT+CGG - chr6_4:54090489-54090508 Msa0990960:intron 60.0%
ACGGGTACGGACACGGACAC+CGG + chr6_4:54086951-54086970 None:intergenic 65.0%
GCCCCTGTGGTACGGTTCAG+GGG + chr6_4:54087028-54087047 None:intergenic 65.0%
GGGAGTGGTGATTGCCCCTG+TGG + chr6_4:54087041-54087060 None:intergenic 65.0%
ACCGCGACACGTCTAACCCC+AGG + chr6_4:54090487-54090506 None:intergenic 65.0%
GGCTTGGGACCGGCCTTGGC+AGG + chr6_4:54087167-54087186 None:intergenic 75.0%
GCCAAGGCCGGTCCCAAGCC+CGG - chr6_4:54087167-54087186 Msa0990960:CDS 75.0%
CCAAGGCCGGTCCCAAGCCC+GGG - chr6_4:54087168-54087187 Msa0990960:CDS 75.0%
! CCCGGGCTTGGGACCGGCCT+TGG + chr6_4:54087171-54087190 None:intergenic 80.0%
Chromosome Type Strat End Strand Name
chr6_4 gene 54085752 54091683 54085752 ID=Msa0990960;Name=Msa0990960
chr6_4 mRNA 54085752 54091683 54085752 ID=Msa0990960-mRNA-1;Parent=Msa0990960;Name=Msa0990960-mRNA-1;_AED=0.00;_eAED=0.00;_QI=471|1|1|1|0.5|0.2|5|163|665
chr6_4 exon 54085752 54086082 54085752 ID=Msa0990960-mRNA-1:exon:11149;Parent=Msa0990960-mRNA-1
chr6_4 exon 54087035 54087220 54087035 ID=Msa0990960-mRNA-1:exon:11148;Parent=Msa0990960-mRNA-1
chr6_4 exon 54087809 54088950 54087809 ID=Msa0990960-mRNA-1:exon:11147;Parent=Msa0990960-mRNA-1
chr6_4 exon 54089053 54089595 54089053 ID=Msa0990960-mRNA-1:exon:11146;Parent=Msa0990960-mRNA-1
chr6_4 exon 54091254 54091683 54091254 ID=Msa0990960-mRNA-1:exon:11145;Parent=Msa0990960-mRNA-1
chr6_4 five_prime_UTR 54091254 54091683 54091254 ID=Msa0990960-mRNA-1:five_prime_utr;Parent=Msa0990960-mRNA-1
chr6_4 five_prime_UTR 54089555 54089595 54089555 ID=Msa0990960-mRNA-1:five_prime_utr;Parent=Msa0990960-mRNA-1
chr6_4 CDS 54089053 54089554 54089053 ID=Msa0990960-mRNA-1:cds;Parent=Msa0990960-mRNA-1
chr6_4 CDS 54087809 54088950 54087809 ID=Msa0990960-mRNA-1:cds;Parent=Msa0990960-mRNA-1
chr6_4 CDS 54087035 54087220 54087035 ID=Msa0990960-mRNA-1:cds;Parent=Msa0990960-mRNA-1
chr6_4 CDS 54085915 54086082 54085915 ID=Msa0990960-mRNA-1:cds;Parent=Msa0990960-mRNA-1
chr6_4 three_prime_UTR 54085752 54085914 54085752 ID=Msa0990960-mRNA-1:three_prime_utr;Parent=Msa0990960-mRNA-1
Gene Sequence

>Msa0990960

ATGGATGCAGCTTTAGAAAAACTCTACTCACTCAAGGGTTTCTCAACAAAAGAAAACGACATCCAAGATCTTGATATATCCTTGCAAGCCTTAACAGAAATAGATCATCGGCTAGCCTATTCTTCCGAGAAGCTGGTGAACTTGCATGTTCTGTATATTTATCTATTGGCTCGAGAAAACGATCTTGAAGAAATAGATTCAAAGAATACCTGCGACTTAGAAAACTCATTTGAGAAGGCAATGATGTTTGATCTGTTGTCTGGCATTTTAGATTTTGAGGCAACAGAGCTTGACAATTTCATGGACACTCTACATGAAGAAATTGTCGATGCTCGTCATAAAATATTGCCGTGCAGACATTTGACTGAGGTTTTCTTTATAATGGATGAAAAATTGCTAGATTCCGAAGAGTCTAAGAAGCAATTACAACAACAGTTATTGGAGTTAAAGATTCAGTCATCGCAGCTTCAGAAAAGTCTTGTGGCTTTCCAACATGAGAATTGGGAAATGGGGAAGGCTTTAAGTTTATCAGAAAATAGTCATGTGTCAAATGTGAAAGTGAAAACCAAAGATCAGAGAATGGTAGAACAACAGAGATATATTCTTCGAATGCTTGAGAAGTCGCTCGCAAGGGAGCTAGATCTTGAAAAGAAGTTAGCGGAGTCAAGAAATAACGAAGAACTAAAGTTGAAACTCCGCTACACTGAACAAGTGGCATTTTATATGGAAGAAGCAGCAGAAGTTGTTTGGGGAAGATTTCTTGAAGCAGACAATGCTACCGAGGTGTTAATGGGGATTTCGAAAAGTATAATGGGACGTCTCCAAGTAACTGAGTTCAACCTCAACGGTTATATGCAGCGAGAAAATGAGCTAAAATTGAATATTCAAATTTTAATCGAACAACTTAAGGCTAAAGATGCTGCTTTAGAGAAGAACGGGAGATGTAATGTTAATGTTGACGATACTCAGGAAAATACTGAGGTGTTGGATTTGAGGGAAAAGGTGAAAATTCTAGAAGAAGAACGAAAGAATTTTGAGGTTCAGATAAATTCTTTGAGTGAAGAGAATGAAGCCTGTCATGAACATCTTATAGAAATAGAAAATTTTGCCGAATCTCTAAAAGAAAGCATTGATATAGCAGAAAATCGAGCTGAGAGTGCTGAAGCAAAGGTTACACAGTTAACTGAAACGAACATGGAACTTACTGAAGAGCTGAACTTTCTTAAAGGGAGTGCTAGTACTGCCGAGAAAAAAGTCGGTTCGCTTGAGAAGCAACTGAGGGAGCTAGATATCCAACTACAGAATGCGAAGGCATCTTCTGAAGCAGGTCAAGAACAGCAGAATATGTTATACACAGCAATTTGGGATATGGAAATATTAATTGAAGAGCTAAAATCTAAGGTTTCAAAAGCTGAAGGTAATAAAGATAGCGCTGAAGAACAATGCATTATGCTATCTGAAAACAACCTTGAACTTCATAAAGAGCTGGATCTCTTCAAGTCGAGAATGCTTTGCATGAAAACATCATTGGATCACGCCAGCAGTACAAAATTATCAAGTGCAAAAGAAATTGATACCAGAACAAAGTTTATCATGGATTTGGTAATGCAACTAGCTACTGAAAGGGAGCGCATTAATAAACAGCTAGATGCTTTAAAACAGGAAAATAAAAGTTTGGTAGGAAAGTTAAAGGAGACTAAAATTGGTGCAAGCAACAATGGGCTAATTAACAGAAATGAAGATCAAGCTTCCAACATTGACTCAAGCAATGATAGCTGTACAAAATCATTTGATGAAGAAGGAATGGAACACTTCAATAAAACCTTTCAGGTGGGTGAACAATCAGAAGTAGCAACATCATCTGTTTCAGCAAATAAGCCTACAAATTGGAGAAACATATTTCTTTTTTGGACAATTTTTATCCCCCTTGTTTCGGTGTTGGTCTTCTGCTTGTTGGACAAAAGCAAGTTTTCTTTTCTGCAAGATTTTTTCAGTTAA

Protein sequence

>Msa0990960

MDAALEKLYSLKGFSTKENDIQDLDISLQALTEIDHRLAYSSEKLVNLHVLYIYLLARENDLEEIDSKNTCDLENSFEKAMMFDLLSGILDFEATELDNFMDTLHEEIVDARHKILPCRHLTEVFFIMDEKLLDSEESKKQLQQQLLELKIQSSQLQKSLVAFQHENWEMGKALSLSENSHVSNVKVKTKDQRMVEQQRYILRMLEKSLARELDLEKKLAESRNNEELKLKLRYTEQVAFYMEEAAEVVWGRFLEADNATEVLMGISKSIMGRLQVTEFNLNGYMQRENELKLNIQILIEQLKAKDAALEKNGRCNVNVDDTQENTEVLDLREKVKILEEERKNFEVQINSLSEENEACHEHLIEIENFAESLKESIDIAENRAESAEAKVTQLTETNMELTEELNFLKGSASTAEKKVGSLEKQLRELDIQLQNAKASSEAGQEQQNMLYTAIWDMEILIEELKSKVSKAEGNKDSAEEQCIMLSENNLELHKELDLFKSRMLCMKTSLDHASSTKLSSAKEIDTRTKFIMDLVMQLATERERINKQLDALKQENKSLVGKLKETKIGASNNGLINRNEDQASNIDSSNDSCTKSFDEEGMEHFNKTFQVGEQSEVATSSVSANKPTNWRNIFLFWTIFIPLVSVLVFCLLDKSKFSFLQDFFS*