AlfalfaGEDB | Msa0202750

M. sativa cultivar zhongmu-4 / Msa0202750

KEGG: K20603
GO: GO:0000165 GO:0000187 GO:0001932 GO:0001934 GO:0002376 GO:0003002 GO:0003674 GO:0003824 GO:0004672 GO:0004674 GO:0004708 GO:0004712 GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0005886 GO:0006464 GO:0006468 GO:0006793 GO:0006796 GO:0006807 GO:0006810 GO:0006950 GO:0006952 GO:0006955 GO:0006970 GO:0007154 GO:0007165 GO:0007275 GO:0007346 GO:0007389 GO:0008150 GO:0008152 GO:0009266 GO:0009409 GO:0009605 GO:0009607 GO:0009628 GO:0009631 GO:0009651 GO:0009814 GO:0009893 GO:0009914 GO:0009966 GO:0009967 GO:0009987 GO:0010051 GO:0010562 GO:0010604 GO:0010646 GO:0010647 GO:0010817 GO:0016020 GO:0016301 GO:0016310 GO:0016740 GO:0016772 GO:0016773 GO:0019220 GO:0019222 GO:0019538 GO:0023014 GO:0023051 GO:0023052 GO:0023056 GO:0031098 GO:0031323 GO:0031325 GO:0031399 GO:0031401 GO:0032147 GO:0032268 GO:0032270 GO:0032501 GO:0032502 GO:0033554 GO:0033674 GO:0035556 GO:0036211 GO:0042325 GO:0042327 GO:0043085 GO:0043170 GO:0043207 GO:0043405 GO:0043406 GO:0043408 GO:0043410 GO:0043412 GO:0043549 GO:0044093 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044424 GO:0044464 GO:0045087 GO:0045859 GO:0045860 GO:0045937 GO:0048518 GO:0048522 GO:0048583 GO:0048584 GO:0048856 GO:0050789 GO:0050790 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051174 GO:0051179 GO:0051234 GO:0051246 GO:0051247 GO:0051338 GO:0051347 GO:0051704 GO:0051707 GO:0051716 GO:0051726 GO:0060255 GO:0060918 GO:0065007 GO:0065008 GO:0065009 GO:0071704 GO:0071900 GO:0071902 GO:0071944 GO:0080090 GO:0098542 GO:0140096 GO:1901564 GO:1902531 GO:1902533
PFAM: PF00069.28

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202750	XP_013463466.1	90.278	360	2	3	1	327	1	360	0.0	650

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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202750	sp\|Q9S7U9\|M2K2_ARATH	57.584	356	122	3	1	327	1	356	1.02e-144	415

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202750	A0A072V792	90.278	360	2	3	1	327	1	360	0.0	650

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TFs/TRs:

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Gene ID	Type	Classification
No data available in table

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Protein Kinases:

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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0006070	Msa0202750	0.804244	2.370914e-49	-8.615850e-47
Msa0054310	Msa0202750	0.830280	3.209938e-55	-8.615850e-47
Msa0055710	Msa0202750	0.813385	2.628867e-51	-8.615850e-47
Msa0085290	Msa0202750	0.808821	2.565465e-50	-8.615850e-47
Msa0100090	Msa0202750	0.813691	2.252201e-51	-8.615850e-47
Msa0114060	Msa0202750	0.803781	2.959000e-49	-8.615850e-47
Msa0135820	Msa0202750	0.806729	7.140384e-50	-8.615850e-47
Msa0141230	Msa0202750	0.848314	6.633662e-60	-8.615850e-47
Msa0148720	Msa0202750	0.814865	1.239122e-51	-8.615850e-47
Msa0173990	Msa0202750	0.823655	1.232079e-53	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202750	MtrunA17_Chr2g0299991	90.278	360	2	3	1	327	1	360	0.0	650
Msa0202750	MtrunA17_Chr4g0070851	67.877	358	80	4	1	325	1	356	1.63e-165	465
Msa0202750	MtrunA17_Chr6g0487231	48.406	345	138	7	1	311	1	339	1.52e-113	333
Msa0202750	MtrunA17_Chr6g0449691	39.711	277	130	6	69	314	83	353	4.21e-57	192
Msa0202750	MtrunA17_Chr4g0000481	37.079	267	132	9	65	301	79	339	9.71e-45	156
Msa0202750	MtrunA17_Chr6g0479211	36.957	276	131	10	63	301	49	318	1.10e-40	144
Msa0202750	MtrunA17_Chr2g0317001	32.197	264	134	7	72	302	17	268	1.40e-30	122
Msa0202750	MtrunA17_Chr8g0386981	32.707	266	126	9	75	301	413	664	8.84e-27	110
Msa0202750	MtrunA17_Chr3g0130151	30.268	261	141	7	74	301	248	500	1.31e-25	107
Msa0202750	MtrunA17_Chr1g0202831	30.268	261	141	6	74	301	415	667	1.53e-25	107

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0202750	AT4G29810.1	57.584	356	122	3	1	327	1	356	1.04e-145	415
Msa0202750	AT4G29810.2	56.164	365	122	4	1	327	1	365	2.31e-142	407
Msa0202750	AT4G26070.2	56.389	360	118	5	1	327	1	354	4.14e-138	395
Msa0202750	AT4G26070.3	56.389	360	118	5	1	327	1	354	4.14e-138	395
Msa0202750	AT4G26070.5	57.485	334	105	4	27	327	12	341	2.54e-133	383
Msa0202750	AT4G26070.4	56.886	334	107	4	27	327	24	353	6.07e-132	380
Msa0202750	AT4G29810.3	56.587	334	107	4	1	296	1	334	1.34e-128	371
Msa0202750	AT4G26070.1	57.692	312	93	5	1	279	1	306	5.31e-118	343
Msa0202750	AT5G56580.1	47.774	337	137	6	9	311	10	341	2.93e-110	325
Msa0202750	AT5G40440.4	39.362	282	134	6	64	314	77	352	2.26e-57	194

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Find 81 sgRNAs with CRISPR-Local

Find 161 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAAGTGATATATGGAGCTT+AGG	0.472099	2_1:-25350283	Msa0202750:CDS
AAACTTATCTGATTGTCTAT+TGG	0.314611	2_1:+25351913	None:intergenic
AAAGAAGCTTCATTAGATGA+AGG	0.524926	2_1:+25352612	None:intergenic
AAAGCAAGCGATAGCGAACA+AGG	0.576013	2_1:-25350316	Msa0202750:CDS
AAAGTTATTGGAAAAGGAAA+TGG	0.386179	2_1:-25351871	Msa0202750:CDS
AAATGGAGGGATAGTCCAAT+TGG	0.490084	2_1:-25351854	Msa0202750:CDS
AACTTGCTTGTTAATAAAGA+TGG	0.423601	2_1:-25352455	Msa0202750:CDS
AAGAGTTTAATGTAAGATAT+TGG	0.371074	2_1:+25352718	None:intergenic
AATAGACAATCAGATAAGTT+TGG	0.405609	2_1:-25351911	Msa0202750:CDS
AATATACTGATAAATCATAG+AGG	0.546463	2_1:-25351006	Msa0202750:CDS

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
GCCAAAATAATCATGAAGAA+AGG	-	chr2_1:25349665-25349684	Msa0202750:CDS	30.0%
AAAGAAGCTTCATTAGATGA+AGG	+	chr2_1:25349722-25349741	None:intergenic	30.0%
TTTATTTGTAGGACTCAAAG+TGG	-	chr2_1:25349837-25349856	Msa0202750:intron	30.0%
TATCAAAAGCTAGAGAAAGT+AGG	+	chr2_1:25350276-25350295	None:intergenic	30.0%
TTATTGGAAAAGGAAATGGA+GGG	-	chr2_1:25350464-25350483	Msa0202750:intron	30.0%
TCTTAAATTATTAGCGGTGT+CGG	-	chr2_1:25350644-25350663	Msa0202750:intron	30.0%
GCAAATTCAAATGAATCTTG+AGG	-	chr2_1:25350782-25350801	Msa0202750:intron	30.0%
ATCAATCATCTTAGAGTACA+TGG	-	chr2_1:25350908-25350927	Msa0202750:intron	30.0%
GACTGTATTCATCTAGATAA+AGG	+	chr2_1:25351144-25351163	None:intergenic	30.0%
AAGGCTGAAGTAAATCAAAT+TGG	+	chr2_1:25351182-25351201	None:intergenic	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr2_1	gene	25349451	25352902	25349451	ID=Msa0202750;Name=Msa0202750
chr2_1	mRNA	25349451	25352902	25349451	ID=Msa0202750-mRNA-1;Parent=Msa0202750;Name=Msa0202750-mRNA-1;_AED=0.08;_eAED=0.08;_QI=226\|0.57\|0.62\|1\|0.71\|0.75\|8\|214\|327
chr2_1	exon	25349451	25349760	25349451	ID=Msa0202750-mRNA-1:exon:9736;Parent=Msa0202750-mRNA-1
chr2_1	exon	25349860	25349905	25349860	ID=Msa0202750-mRNA-1:exon:9735;Parent=Msa0202750-mRNA-1
chr2_1	exon	25350115	25350346	25350115	ID=Msa0202750-mRNA-1:exon:9734;Parent=Msa0202750-mRNA-1
chr2_1	exon	25350932	25351085	25350932	ID=Msa0202750-mRNA-1:exon:9733;Parent=Msa0202750-mRNA-1
chr2_1	exon	25351391	25351549	25351391	ID=Msa0202750-mRNA-1:exon:9732;Parent=Msa0202750-mRNA-1
chr2_1	exon	25351816	25351950	25351816	ID=Msa0202750-mRNA-1:exon:9731;Parent=Msa0202750-mRNA-1
chr2_1	exon	25352421	25352505	25352421	ID=Msa0202750-mRNA-1:exon:9730;Parent=Msa0202750-mRNA-1
chr2_1	exon	25352600	25352902	25352600	ID=Msa0202750-mRNA-1:exon:9729;Parent=Msa0202750-mRNA-1
chr2_1	five_prime_UTR	25352677	25352902	25352677	ID=Msa0202750-mRNA-1:five_prime_utr;Parent=Msa0202750-mRNA-1
chr2_1	CDS	25352600	25352676	25352600	ID=Msa0202750-mRNA-1:cds;Parent=Msa0202750-mRNA-1
chr2_1	CDS	25352421	25352505	25352421	ID=Msa0202750-mRNA-1:cds;Parent=Msa0202750-mRNA-1
chr2_1	CDS	25351816	25351950	25351816	ID=Msa0202750-mRNA-1:cds;Parent=Msa0202750-mRNA-1
chr2_1	CDS	25351391	25351549	25351391	ID=Msa0202750-mRNA-1:cds;Parent=Msa0202750-mRNA-1
chr2_1	CDS	25350932	25351085	25350932	ID=Msa0202750-mRNA-1:cds;Parent=Msa0202750-mRNA-1
chr2_1	CDS	25350115	25350346	25350115	ID=Msa0202750-mRNA-1:cds;Parent=Msa0202750-mRNA-1
chr2_1	CDS	25349860	25349905	25349860	ID=Msa0202750-mRNA-1:cds;Parent=Msa0202750-mRNA-1
chr2_1	CDS	25349665	25349760	25349665	ID=Msa0202750-mRNA-1:cds;Parent=Msa0202750-mRNA-1
chr2_1	three_prime_UTR	25349451	25349664	25349451	ID=Msa0202750-mRNA-1:three_prime_utr;Parent=Msa0202750-mRNA-1

Gene Sequence

>Msa0202750

ATGAAGAAAGGTTGTTTAGCTCCAAATCTCAAACTCAATGTTCCTTCATCTAATGAAGCTTCTTTTGCTAAGTTTCTGACTCAAAGTGGTACTTTTAAAGAAGGGAACTTGCTTGTTAATAAAGATGGAGTTAGAATTGTTTCTCAAAGTGAAGTTGAAACTCAACCACCAATCAAGCCAATAGACAATCAGATAAGTTTGGCAGAGATTGATACAATCAAAGTTATTGGAAAAGGAAATGGAGGGATAGTCCAATTGGTGCAACATAAATGGACTAATCAATTTTTTGCATTAAAGGATGCAACATGCAAGCAGATAGCAAACGAGCTAAAAATCAATCAATCAGCACTATGTCCTTATGTGGTTGTTTGCTATCAATCAATCTATGATAATGGCACCATATCAATCATCTTAGAGTACATGGATGGAGGGTCCTTAGAGGATCTTCTCAACAAAGGTTTGATGTATCTTCACCATGAGAAACACATTATTCATAGGGACTTGAAACCTTCTAATATACTGATAAATCATAGAGGGGAGGTGAAAATTACTGATTTTGGTGTAAGTGCAATCATGGAATCTACATCTGGTCAAGCAAATACTTTCATTGAAAGAATCAAAGCAAGCGATAGCGAACAAGGCTACAACTACAAAAGTGATATATGGAGCTTAGGACTGATGTTACTCAAGTGTGCTACTGGGAAGTTTCCGTATACACCACCAGATAATAGTGAAGGATGGGAGAATTTGTTTCTGCTTATTGAAGCGATTGTTGAAAAACCTTCACCTAGTGCTCCACCTGATGAATGTTCTCCCGAATTTTGCTCATTTATCTCAGCATGTTTACAGAAAAATCCGAGGGACAGACCATCAACTCGAAACCTATTGAGGCATCCTTTTGTCAACATGTATGATGACTTGCATGTGGATCTTTCAGATTATTTCTCCAATGCAGGGTCTACACTTGCAACCATATCAAACTAA

Protein sequence

>Msa0202750

MKKGCLAPNLKLNVPSSNEASFAKFLTQSGTFKEGNLLVNKDGVRIVSQSEVETQPPIKPIDNQISLAEIDTIKVIGKGNGGIVQLVQHKWTNQFFALKDATCKQIANELKINQSALCPYVVVCYQSIYDNGTISIILEYMDGGSLEDLLNKGLMYLHHEKHIIHRDLKPSNILINHRGEVKITDFGVSAIMESTSGQANTFIERIKASDSEQGYNYKSDIWSLGLMLLKCATGKFPYTPPDNSEGWENLFLLIEAIVEKPSPSAPPDECSPEFCSFISACLQKNPRDRPSTRNLLRHPFVNMYDDLHVDLSDYFSNAGSTLATISN*