AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1459930


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459930 MtrunA17_Chr5g0447941 97.436 312 8 0 1 312 1 312 0.0 629
Msa1459930 MtrunA17_Chr5g0447951 97.115 312 9 0 1 312 1 312 0.0 628
Msa1459930 MtrunA17_Chr5g0447961 97.115 312 9 0 1 312 1 312 0.0 628
Msa1459930 MtrunA17_Chr3g0121001 67.857 308 98 1 6 312 7 314 4.51e-162 454
Msa1459930 MtrunA17_Chr1g0173621 62.623 305 111 3 1 302 1 305 3.57e-137 391
Msa1459930 MtrunA17_Chr6g0479981 50.165 303 144 5 1 300 1 299 9.00e-97 288
Msa1459930 MtrunA17_Chr6g0480011 49.032 310 139 8 1 300 1 301 1.02e-94 283
Msa1459930 MtrunA17_Chr6g0480021 48.366 306 124 7 19 311 16 300 1.87e-92 276
Msa1459930 MtrunA17_Chr8g0368921 43.310 284 158 2 19 300 15 297 2.62e-76 236
Msa1459930 MtrunA17_Chr4g0018921 41.754 285 161 4 18 300 12 293 1.17e-73 229
Msa1459930 MtrunA17_Chr7g0239701 43.015 272 143 3 49 311 47 315 5.36e-71 222
Msa1459930 MtrunA17_Chr8g0368931 43.056 288 153 4 19 302 15 295 1.35e-70 221
Msa1459930 MtrunA17_Chr4g0009531 43.098 297 152 6 19 310 15 299 1.34e-66 211
Msa1459930 MtrunA17_Chr4g0009581 41.639 305 150 6 19 312 16 303 1.51e-63 203
Msa1459930 MtrunA17_Chr4g0036261 58.750 160 65 1 139 297 1 160 2.68e-60 190
Msa1459930 MtrunA17_Chr4g0036051 39.414 307 171 6 15 310 6 308 4.89e-60 194
Msa1459930 MtrunA17_Chr7g0243551 38.686 274 160 5 20 292 23 289 1.84e-58 189
Msa1459930 MtrunA17_Chr4g0036301 52.941 170 70 3 151 311 1 169 3.01e-51 167
Msa1459930 MtrunA17_Chr4g0036321 52.353 170 71 3 151 311 1 169 1.01e-49 163
Msa1459930 MtrunA17_Chr4g0009621 42.466 219 114 2 82 300 1 207 1.83e-43 149
Msa1459930 MtrunA17_Chr6g0479811 46.018 113 56 2 191 300 1 111 7.88e-26 99.4
Msa1459930 MtrunA17_Chr4g0036291 50.000 90 43 2 20 107 17 106 1.83e-23 92.8
Msa1459930 MtrunA17_Chr4g0036311 43.119 109 57 3 1 107 1 106 9.93e-23 90.9
Msa1459930 MtrunA17_Chr4g0036251 46.296 108 49 3 1 107 1 100 1.09e-22 90.5
Msa1459930 MtrunA17_Chr3g0095421 26.140 329 159 13 15 285 42 344 3.16e-17 81.3
Msa1459930 MtrunA17_Chr6g0479791 49.412 85 32 3 237 311 18 101 1.69e-16 73.9
Msa1459930 MtrunA17_Chr3g0127491 23.256 301 179 10 36 298 71 357 1.44e-14 73.6
Msa1459930 MtrunA17_Chr7g0274071 25.606 289 151 11 41 290 52 315 8.08e-14 71.2
Msa1459930 MtrunA17_Chr7g0274061 25.000 316 176 13 16 290 24 319 3.50e-13 69.3
Msa1459930 MtrunA17_Chr7g0222171 24.739 287 162 9 41 292 43 310 2.69e-11 63.5
Msa1459930 MtrunA17_Chr1g0204651 23.226 310 167 10 24 290 29 310 4.25e-11 63.2
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1459930 AT1G59960.1 53.571 308 132 6 1 300 1 305 3.47e-113 330
Msa1459930 AT1G59950.1 55.903 288 117 5 20 300 15 299 5.00e-106 312
Msa1459930 AT2G37770.2 45.105 286 146 4 19 300 15 293 6.16e-79 243
Msa1459930 AT2G37790.1 43.357 286 151 4 19 300 15 293 7.67e-77 238
Msa1459930 AT5G62420.1 43.662 284 154 4 20 300 14 294 6.16e-74 230
Msa1459930 AT5G01670.1 42.254 284 155 6 19 300 23 299 7.39e-73 228
Msa1459930 AT2G37760.4 43.662 284 147 4 19 299 15 288 1.26e-72 226
Msa1459930 AT2G37760.3 43.662 284 147 4 19 299 15 288 1.26e-72 226
Msa1459930 AT2G37760.5 44.128 281 144 4 19 296 15 285 1.04e-71 224
Msa1459930 AT2G37760.2 43.463 283 147 4 19 298 15 287 9.46e-71 222
Msa1459930 AT2G37760.1 43.463 283 147 4 19 298 15 287 9.46e-71 222
Msa1459930 AT3G53880.1 42.049 283 159 3 19 300 15 293 5.82e-70 220
Msa1459930 AT2G21260.1 39.384 292 162 6 15 295 6 293 3.96e-68 215
Msa1459930 AT3G53880.2 42.143 280 151 4 19 294 15 287 1.54e-67 214
Msa1459930 AT5G01670.2 38.585 311 155 7 19 300 23 326 6.26e-67 213
Msa1459930 AT2G21250.1 38.111 307 175 6 15 310 6 308 8.41e-67 212
Msa1459930 AT2G37760.6 43.333 240 129 3 62 298 6 241 2.81e-58 188
Msa1459930 AT2G37760.7 43.333 240 129 3 62 298 6 241 2.81e-58 188
Msa1459930 AT2G37770.1 48.223 197 92 3 19 212 15 204 5.00e-55 181
Msa1459930 AT2G21250.2 42.381 210 110 5 15 217 6 211 8.12e-49 163
Msa1459930 AT2G21260.2 35.000 220 130 5 87 295 8 225 1.22e-41 144
Msa1459930 AT1G06690.1 27.336 289 154 9 35 285 85 355 9.65e-20 89.0
Msa1459930 AT5G53580.1 24.296 284 160 9 44 289 80 346 2.57e-15 76.3
Msa1459930 AT1G60680.1 27.215 316 163 16 15 285 14 307 1.83e-13 70.5

Find 74 sgRNAs with CRISPR-Local

Find 180 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
AATCAAAGATACGTAAATTT+TGG 0.232119 tig0040550:-6370 None:intergenic
ATTGGAAATGAAAACTTTCC+AGG 0.288960 tig0040550:-5829 None:intergenic
TGCTTGCACCTTTCCTCAAC+GGG 0.292412 tig0040550:-6202 None:intergenic
ATAACTTGGAGAAAATAAAA+TGG 0.308072 tig0040550:-6617 None:intergenic
TGGACTTGTACCTGATTCAT+TGG 0.308628 tig0040550:+5791 Msa1459930:CDS
GTGTCTATAACCTTGTTTGA+TGG 0.333209 tig0040550:-5350 None:intergenic
TCATTCTCCATAACTTCATT+TGG 0.362803 tig0040550:-6230 None:intergenic
CATTTGATGTGAAAGGTGTT+TGG 0.370719 tig0040550:+5872 Msa1459930:CDS
TCTTTCTTACATGTGAAGTC+AGG 0.371382 tig0040550:-5304 None:intergenic
TTGCACAAATTTCTCTAAGA+TGG 0.374326 tig0040550:+6291 Msa1459930:CDS
CTTGGACTCACTAAAGCTAT+TGG 0.375778 tig0040550:+5919 Msa1459930:CDS
CAAACACCTTTCACATCAAA+TGG 0.381803 tig0040550:-5871 None:intergenic
AAAATTTACGTATCTTTGAT+TGG 0.384113 tig0040550:+6372 Msa1459930:CDS
AACTAAGTGGCCAATGAATC+AGG 0.385049 tig0040550:-5801 None:intergenic
AGTCCGGGCTTGGTTGGTCC+AGG 0.391423 tig0040550:-6452 None:intergenic
TTTGATACTGCTGCTGCATA+TGG 0.396016 tig0040550:+5373 Msa1459930:CDS
AACACTACCCATGTTGTTGT+TGG 0.397673 tig0040550:-5209 None:intergenic
ATCATAGAGGTCATTGAGTC+CGG 0.411816 tig0040550:-6468 None:intergenic
AAGAGATCTGCCACATCAAT+TGG 0.421446 tig0040550:-5847 None:intergenic
TTGAAAGAGGCAATTGAACT+TGG 0.422526 tig0040550:+5421 Msa1459930:CDS
ATTTGATGTGAAAGGTGTTT+GGG 0.426961 tig0040550:+5873 Msa1459930:CDS
TGTTCCCAAGAGCTATGATA+AGG 0.434816 tig0040550:+6337 Msa1459930:CDS
TCTCTCCTTATCATAGCTCT+TGG 0.436966 tig0040550:-6342 None:intergenic
CTCTCCTTATCATAGCTCTT+GGG 0.442349 tig0040550:-6341 None:intergenic
GAGGTCATTGAGTCCGGGCT+TGG 0.446240 tig0040550:-6462 None:intergenic
CAGGGGACCAAATGAAGTTA+TGG 0.449659 tig0040550:+6223 Msa1459930:CDS
AAGCAAAATCGTTTGATCCC+TGG 0.455139 tig0040550:+6434 Msa1459930:CDS
CGTTGAGGAAAGGTGCAAGC+AGG 0.464952 tig0040550:+6204 Msa1459930:CDS
AAAGTTTAGAAGTAACAAAA+AGG 0.467615 tig0040550:-5462 None:intergenic
GACTCTTCAACTAGACTACT+TGG 0.469433 tig0040550:+5771 Msa1459930:CDS
CTGCTTGCACCTTTCCTCAA+CGG 0.474588 tig0040550:-6203 None:intergenic
GAGCTATGATAAGGAGAGAA+TGG 0.478164 tig0040550:+6346 Msa1459930:CDS
ATCCCTGGACCAACCAAGCC+CGG 0.482612 tig0040550:+6449 Msa1459930:CDS
AAGTTTCAAGCTTTCCTCCA+TGG 0.483539 tig0040550:-5899 None:intergenic
TATGGCTCAGAACAAGCTCT+TGG 0.491850 tig0040550:+5391 Msa1459930:CDS
ATGGAGGAAAGCTTGAAACT+TGG 0.498400 tig0040550:+5901 Msa1459930:CDS
TCTTGGAGAGGCTTTGAAAG+AGG 0.506147 tig0040550:+5408 Msa1459930:CDS
CTTTCTTACATGTGAAGTCA+GGG 0.506502 tig0040550:-5303 None:intergenic
GTGTTTGTAAGAACCTTTGT+TGG 0.534052 tig0040550:-5238 None:intergenic
GAAGATGCCTGTGGTTGGAA+TGG 0.535658 tig0040550:+5273 Msa1459930:CDS
GTCCGGGCTTGGTTGGTCCA+GGG 0.541777 tig0040550:-6451 None:intergenic
AATACTACTATGAAATAACT+TGG 0.542284 tig0040550:-6631 None:intergenic
TCATTGAGTCCGGGCTTGGT+TGG 0.547327 tig0040550:-6458 None:intergenic
GTTGAGGAAAGGTGCAAGCA+GGG 0.550606 tig0040550:+6205 Msa1459930:CDS
TCTATATTTAGTCATCATAG+AGG 0.553846 tig0040550:-6481 None:intergenic
AAGATGCCTGTGGTTGGAAT+GGG 0.555328 tig0040550:+5274 Msa1459930:CDS
TGGCCACTTAGTTCTCAGCC+TGG 0.559322 tig0040550:+5811 Msa1459930:CDS
CTTTGATTGGTCATTGACAA+AGG 0.559604 tig0040550:+6385 Msa1459930:CDS
TCATAGAGGTCATTGAGTCC+GGG 0.574712 tig0040550:-6467 None:intergenic
CTAAGATGGTTATATGAACA+AGG 0.578678 tig0040550:+6305 Msa1459930:CDS
AGGTGGAGATGAACCTTGCA+TGG 0.584406 tig0040550:+6120 Msa1459930:intron
GCTGATCCCATTCCAACCAC+AGG 0.587516 tig0040550:-5280 None:intergenic
ATCATTGAAGCCATCAAACA+AGG 0.587661 tig0040550:+5340 Msa1459930:CDS
GAAAGGTGTTTGGGAATCCA+TGG 0.587744 tig0040550:+5882 Msa1459930:CDS
TAGTGTTGAAATTCCAACAA+AGG 0.595790 tig0040550:+5225 Msa1459930:CDS
TGAATTACTTGATTGACTGC+AGG 0.596137 tig0040550:-6000 None:intergenic
TTCTCAATCCAACAACAACA+TGG 0.599916 tig0040550:+5201 Msa1459930:exon
AAATTGATTATTTAAAACAA+CGG 0.602105 tig0040550:-6593 None:intergenic
TTTCTTACATGTGAAGTCAG+GGG 0.620409 tig0040550:-5302 None:intergenic
CAATTGAAGATGCCTGTGGT+TGG 0.621459 tig0040550:+5268 Msa1459930:CDS
ATGTTGTTGTTGGATTGAGA+AGG 0.624157 tig0040550:-5199 None:intergenic
AGAGCAGGAATAACAAGATG+AGG 0.624425 tig0040550:-5502 None:intergenic
TTGAGGAAAGGTGCAAGCAG+GGG 0.624444 tig0040550:+6206 Msa1459930:CDS
TTTCCTCAACGGGGAAAATG+CGG 0.632608 tig0040550:-6192 None:intergenic
AAAGAGATTGCAGATGCACA+TGG 0.633321 tig0040550:+6260 Msa1459930:CDS
CTCAGAACAAGCTCTTGGAG+AGG 0.635937 tig0040550:+5396 Msa1459930:CDS
TTTCCAGGCTGAGAACTAAG+TGG 0.647166 tig0040550:-5814 None:intergenic
CTCTTGCCATTTGATGTGAA+AGG 0.649522 tig0040550:+5865 Msa1459930:CDS
TGATTGGTCATTGACAAAGG+AGG 0.655967 tig0040550:+6388 Msa1459930:CDS
TCTCAATCCAACAACAACAT+GGG 0.679881 tig0040550:+5202 Msa1459930:exon
ATTGACTGCAGGAAGAACAG+TGG 0.718468 tig0040550:-5989 None:intergenic
AGGTGTTTGGGAATCCATGG+AGG 0.719619 tig0040550:+5885 Msa1459930:CDS
GCTTGCACCTTTCCTCAACG+GGG 0.723595 tig0040550:-6201 None:intergenic
TAGTCAATTGAAGATGCCTG+TGG 0.737799 tig0040550:+5264 Msa1459930:CDS

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAATTGATTATTTAAAACAA+CGG - tig0040550:6596-6615 None:intergenic 10.0%
!!! AAATTGATTATTTAAAACAA+CGG - tig0040550:6596-6615 None:intergenic 10.0%
!! AAAGTTTAGAAGTAACAAAA+AGG - tig0040550:5465-5484 None:intergenic 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG + tig0040550:5464-5483 Msa1459930:CDS 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG + tig0040550:5465-5484 Msa1459930:CDS 20.0%
!!! GTTTAAGTTAATCAAAACTT+AGG - tig0040550:6035-6054 None:intergenic 20.0%
!! CAATGAACTCATATATTTAT+AGG + tig0040550:6100-6119 Msa1459930:intron 20.0%
!!! AATCAAAGATACGTAAATTT+TGG - tig0040550:6373-6392 None:intergenic 20.0%
!! AAAATTTACGTATCTTTGAT+TGG + tig0040550:6372-6391 Msa1459930:CDS 20.0%
!!! TAATTTTGAAGCAAACTTAA+AGG - tig0040550:6524-6543 None:intergenic 20.0%
!! ATAACTTGGAGAAAATAAAA+TGG - tig0040550:6620-6639 None:intergenic 20.0%
!! AATACTACTATGAAATAACT+TGG - tig0040550:6634-6653 None:intergenic 20.0%
!! AAAGTTTAGAAGTAACAAAA+AGG - tig0040550:5465-5484 None:intergenic 20.0%
!!! TTTTTGTTACTTCTAAACTT+TGG + tig0040550:5464-5483 Msa1459930:CDS 20.0%
!!! TTTTGTTACTTCTAAACTTT+GGG + tig0040550:5465-5484 Msa1459930:CDS 20.0%
!!! GTTTAAGTTAATCAAAACTT+AGG - tig0040550:6035-6054 None:intergenic 20.0%
!! CAATGAACTCATATATTTAT+AGG + tig0040550:6100-6119 Msa1459930:intron 20.0%
!!! AATCAAAGATACGTAAATTT+TGG - tig0040550:6373-6392 None:intergenic 20.0%
!! AAAATTTACGTATCTTTGAT+TGG + tig0040550:6372-6391 Msa1459930:CDS 20.0%
!!! TAATTTTGAAGCAAACTTAA+AGG - tig0040550:6524-6543 None:intergenic 20.0%
!! ATAACTTGGAGAAAATAAAA+TGG - tig0040550:6620-6639 None:intergenic 20.0%
!! AATACTACTATGAAATAACT+TGG - tig0040550:6634-6653 None:intergenic 20.0%
! GAGTATATTTAGATGACATT+TGG + tig0040550:5570-5589 Msa1459930:intron 25.0%
!!! GATTCATTTTTGTTCTTCAA+TGG - tig0040550:5703-5722 None:intergenic 25.0%
! TGAACTCATATATTTATAGG+TGG + tig0040550:6103-6122 Msa1459930:intron 25.0%
! TCTATATTTAGTCATCATAG+AGG - tig0040550:6484-6503 None:intergenic 25.0%
! GAGTATATTTAGATGACATT+TGG + tig0040550:5570-5589 Msa1459930:intron 25.0%
!!! GATTCATTTTTGTTCTTCAA+TGG - tig0040550:5703-5722 None:intergenic 25.0%
! TGAACTCATATATTTATAGG+TGG + tig0040550:6103-6122 Msa1459930:intron 25.0%
! TCTATATTTAGTCATCATAG+AGG - tig0040550:6484-6503 None:intergenic 25.0%
! TAGTGTTGAAATTCCAACAA+AGG + tig0040550:5225-5244 Msa1459930:CDS 30.0%
ATTGGAAATGAAAACTTTCC+AGG - tig0040550:5832-5851 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG + tig0040550:5837-5856 Msa1459930:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + tig0040550:5873-5892 Msa1459930:CDS 30.0%
TCATTCTCCATAACTTCATT+TGG - tig0040550:6233-6252 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + tig0040550:6291-6310 Msa1459930:CDS 30.0%
CTAAGATGGTTATATGAACA+AGG + tig0040550:6305-6324 Msa1459930:CDS 30.0%
! TAGTGTTGAAATTCCAACAA+AGG + tig0040550:5225-5244 Msa1459930:CDS 30.0%
ATTGGAAATGAAAACTTTCC+AGG - tig0040550:5832-5851 None:intergenic 30.0%
! GTTTTCATTTCCAATTGATG+TGG + tig0040550:5837-5856 Msa1459930:CDS 30.0%
!! ATTTGATGTGAAAGGTGTTT+GGG + tig0040550:5873-5892 Msa1459930:CDS 30.0%
TCATTCTCCATAACTTCATT+TGG - tig0040550:6233-6252 None:intergenic 30.0%
! TTGCACAAATTTCTCTAAGA+TGG + tig0040550:6291-6310 Msa1459930:CDS 30.0%
CTAAGATGGTTATATGAACA+AGG + tig0040550:6305-6324 Msa1459930:CDS 30.0%
! ATGTTGTTGTTGGATTGAGA+AGG - tig0040550:5202-5221 None:intergenic 35.0%
TTCTCAATCCAACAACAACA+TGG + tig0040550:5201-5220 Msa1459930:exon 35.0%
TCTCAATCCAACAACAACAT+GGG + tig0040550:5202-5221 Msa1459930:exon 35.0%
GTGTTTGTAAGAACCTTTGT+TGG - tig0040550:5241-5260 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - tig0040550:5305-5324 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - tig0040550:5306-5325 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - tig0040550:5307-5326 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + tig0040550:5340-5359 Msa1459930:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - tig0040550:5353-5372 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + tig0040550:5421-5440 Msa1459930:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG - tig0040550:5520-5539 None:intergenic 35.0%
!! ATGATTTGTTGATTTCGTGC+AGG + tig0040550:5749-5768 Msa1459930:intron 35.0%
CAAACACCTTTCACATCAAA+TGG - tig0040550:5874-5893 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + tig0040550:5872-5891 Msa1459930:CDS 35.0%
TGAATTACTTGATTGACTGC+AGG - tig0040550:6003-6022 None:intergenic 35.0%
! CTTTGATTGGTCATTGACAA+AGG + tig0040550:6385-6404 Msa1459930:CDS 35.0%
!!! ATACTTGTTGCTTTTGAGCT+TGG + tig0040550:6565-6584 Msa1459930:three_prime_UTR 35.0%
! ATGTTGTTGTTGGATTGAGA+AGG - tig0040550:5202-5221 None:intergenic 35.0%
TTCTCAATCCAACAACAACA+TGG + tig0040550:5201-5220 Msa1459930:exon 35.0%
TCTCAATCCAACAACAACAT+GGG + tig0040550:5202-5221 Msa1459930:exon 35.0%
GTGTTTGTAAGAACCTTTGT+TGG - tig0040550:5241-5260 None:intergenic 35.0%
TTTCTTACATGTGAAGTCAG+GGG - tig0040550:5305-5324 None:intergenic 35.0%
CTTTCTTACATGTGAAGTCA+GGG - tig0040550:5306-5325 None:intergenic 35.0%
TCTTTCTTACATGTGAAGTC+AGG - tig0040550:5307-5326 None:intergenic 35.0%
ATCATTGAAGCCATCAAACA+AGG + tig0040550:5340-5359 Msa1459930:CDS 35.0%
! GTGTCTATAACCTTGTTTGA+TGG - tig0040550:5353-5372 None:intergenic 35.0%
TTGAAAGAGGCAATTGAACT+TGG + tig0040550:5421-5440 Msa1459930:CDS 35.0%
!! TTGAGAGATTTTTGAAGAGC+AGG - tig0040550:5520-5539 None:intergenic 35.0%
!! ATGATTTGTTGATTTCGTGC+AGG + tig0040550:5749-5768 Msa1459930:intron 35.0%
CAAACACCTTTCACATCAAA+TGG - tig0040550:5874-5893 None:intergenic 35.0%
!! CATTTGATGTGAAAGGTGTT+TGG + tig0040550:5872-5891 Msa1459930:CDS 35.0%
TGAATTACTTGATTGACTGC+AGG - tig0040550:6003-6022 None:intergenic 35.0%
! CTTTGATTGGTCATTGACAA+AGG + tig0040550:6385-6404 Msa1459930:CDS 35.0%
!!! ATACTTGTTGCTTTTGAGCT+TGG + tig0040550:6565-6584 Msa1459930:three_prime_UTR 35.0%
AACACTACCCATGTTGTTGT+TGG - tig0040550:5212-5231 None:intergenic 40.0%
TAGTCAATTGAAGATGCCTG+TGG + tig0040550:5264-5283 Msa1459930:CDS 40.0%
TTTGATACTGCTGCTGCATA+TGG + tig0040550:5373-5392 Msa1459930:CDS 40.0%
AGAGCAGGAATAACAAGATG+AGG - tig0040550:5505-5524 None:intergenic 40.0%
GACTCTTCAACTAGACTACT+TGG + tig0040550:5771-5790 Msa1459930:CDS 40.0%
TGGACTTGTACCTGATTCAT+TGG + tig0040550:5791-5810 Msa1459930:CDS 40.0%
AACTAAGTGGCCAATGAATC+AGG - tig0040550:5804-5823 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - tig0040550:5850-5869 None:intergenic 40.0%
! CTCTTGCCATTTGATGTGAA+AGG + tig0040550:5865-5884 Msa1459930:CDS 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - tig0040550:5902-5921 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + tig0040550:5901-5920 Msa1459930:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + tig0040550:5919-5938 Msa1459930:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + tig0040550:6260-6279 Msa1459930:CDS 40.0%
TGTTCCCAAGAGCTATGATA+AGG + tig0040550:6337-6356 Msa1459930:CDS 40.0%
CTCTCCTTATCATAGCTCTT+GGG - tig0040550:6344-6363 None:intergenic 40.0%
TCTCTCCTTATCATAGCTCT+TGG - tig0040550:6345-6364 None:intergenic 40.0%
GAGCTATGATAAGGAGAGAA+TGG + tig0040550:6346-6365 Msa1459930:CDS 40.0%
! TGATTGGTCATTGACAAAGG+AGG + tig0040550:6388-6407 Msa1459930:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + tig0040550:6434-6453 Msa1459930:CDS 40.0%
ATCATAGAGGTCATTGAGTC+CGG - tig0040550:6471-6490 None:intergenic 40.0%
AACACTACCCATGTTGTTGT+TGG - tig0040550:5212-5231 None:intergenic 40.0%
TAGTCAATTGAAGATGCCTG+TGG + tig0040550:5264-5283 Msa1459930:CDS 40.0%
TTTGATACTGCTGCTGCATA+TGG + tig0040550:5373-5392 Msa1459930:CDS 40.0%
AGAGCAGGAATAACAAGATG+AGG - tig0040550:5505-5524 None:intergenic 40.0%
GACTCTTCAACTAGACTACT+TGG + tig0040550:5771-5790 Msa1459930:CDS 40.0%
TGGACTTGTACCTGATTCAT+TGG + tig0040550:5791-5810 Msa1459930:CDS 40.0%
AACTAAGTGGCCAATGAATC+AGG - tig0040550:5804-5823 None:intergenic 40.0%
AAGAGATCTGCCACATCAAT+TGG - tig0040550:5850-5869 None:intergenic 40.0%
! CTCTTGCCATTTGATGTGAA+AGG + tig0040550:5865-5884 Msa1459930:CDS 40.0%
AAGTTTCAAGCTTTCCTCCA+TGG - tig0040550:5902-5921 None:intergenic 40.0%
ATGGAGGAAAGCTTGAAACT+TGG + tig0040550:5901-5920 Msa1459930:CDS 40.0%
CTTGGACTCACTAAAGCTAT+TGG + tig0040550:5919-5938 Msa1459930:CDS 40.0%
AAAGAGATTGCAGATGCACA+TGG + tig0040550:6260-6279 Msa1459930:CDS 40.0%
TGTTCCCAAGAGCTATGATA+AGG + tig0040550:6337-6356 Msa1459930:CDS 40.0%
CTCTCCTTATCATAGCTCTT+GGG - tig0040550:6344-6363 None:intergenic 40.0%
TCTCTCCTTATCATAGCTCT+TGG - tig0040550:6345-6364 None:intergenic 40.0%
GAGCTATGATAAGGAGAGAA+TGG + tig0040550:6346-6365 Msa1459930:CDS 40.0%
! TGATTGGTCATTGACAAAGG+AGG + tig0040550:6388-6407 Msa1459930:CDS 40.0%
AAGCAAAATCGTTTGATCCC+TGG + tig0040550:6434-6453 Msa1459930:CDS 40.0%
ATCATAGAGGTCATTGAGTC+CGG - tig0040550:6471-6490 None:intergenic 40.0%
CAATTGAAGATGCCTGTGGT+TGG + tig0040550:5268-5287 Msa1459930:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + tig0040550:5274-5293 Msa1459930:CDS 45.0%
TATGGCTCAGAACAAGCTCT+TGG + tig0040550:5391-5410 Msa1459930:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + tig0040550:5408-5427 Msa1459930:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG - tig0040550:5817-5836 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + tig0040550:5882-5901 Msa1459930:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG - tig0040550:5992-6011 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG - tig0040550:6136-6155 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG + tig0040550:6158-6177 Msa1459930:CDS 45.0%
TTTCCTCAACGGGGAAAATG+CGG - tig0040550:6195-6214 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG + tig0040550:6223-6242 Msa1459930:CDS 45.0%
TCATAGAGGTCATTGAGTCC+GGG - tig0040550:6470-6489 None:intergenic 45.0%
CAATTGAAGATGCCTGTGGT+TGG + tig0040550:5268-5287 Msa1459930:CDS 45.0%
AAGATGCCTGTGGTTGGAAT+GGG + tig0040550:5274-5293 Msa1459930:CDS 45.0%
TATGGCTCAGAACAAGCTCT+TGG + tig0040550:5391-5410 Msa1459930:CDS 45.0%
!! TCTTGGAGAGGCTTTGAAAG+AGG + tig0040550:5408-5427 Msa1459930:CDS 45.0%
TTTCCAGGCTGAGAACTAAG+TGG - tig0040550:5817-5836 None:intergenic 45.0%
!! GAAAGGTGTTTGGGAATCCA+TGG + tig0040550:5882-5901 Msa1459930:CDS 45.0%
ATTGACTGCAGGAAGAACAG+TGG - tig0040550:5992-6011 None:intergenic 45.0%
! GCTTCTTTTGTTGCCATGCA+AGG - tig0040550:6136-6155 None:intergenic 45.0%
! AGAGAGTTTTGCAACGCACA+CGG + tig0040550:6158-6177 Msa1459930:CDS 45.0%
TTTCCTCAACGGGGAAAATG+CGG - tig0040550:6195-6214 None:intergenic 45.0%
CAGGGGACCAAATGAAGTTA+TGG + tig0040550:6223-6242 Msa1459930:CDS 45.0%
TCATAGAGGTCATTGAGTCC+GGG - tig0040550:6470-6489 None:intergenic 45.0%
GAAGATGCCTGTGGTTGGAA+TGG + tig0040550:5273-5292 Msa1459930:CDS 50.0%
CTCAGAACAAGCTCTTGGAG+AGG + tig0040550:5396-5415 Msa1459930:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + tig0040550:5885-5904 Msa1459930:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + tig0040550:6120-6139 Msa1459930:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG + tig0040550:6189-6208 Msa1459930:CDS 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG + tig0040550:6194-6213 Msa1459930:CDS 50.0%
TGCTTGCACCTTTCCTCAAC+GGG - tig0040550:6205-6224 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - tig0040550:6206-6225 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG + tig0040550:6205-6224 Msa1459930:CDS 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG + tig0040550:6206-6225 Msa1459930:CDS 50.0%
GAAGATGCCTGTGGTTGGAA+TGG + tig0040550:5273-5292 Msa1459930:CDS 50.0%
CTCAGAACAAGCTCTTGGAG+AGG + tig0040550:5396-5415 Msa1459930:CDS 50.0%
AGGTGTTTGGGAATCCATGG+AGG + tig0040550:5885-5904 Msa1459930:CDS 50.0%
AGGTGGAGATGAACCTTGCA+TGG + tig0040550:6120-6139 Msa1459930:intron 50.0%
! TAACCGCATTTTCCCCGTTG+AGG + tig0040550:6189-6208 Msa1459930:CDS 50.0%
! GCATTTTCCCCGTTGAGGAA+AGG + tig0040550:6194-6213 Msa1459930:CDS 50.0%
TGCTTGCACCTTTCCTCAAC+GGG - tig0040550:6205-6224 None:intergenic 50.0%
CTGCTTGCACCTTTCCTCAA+CGG - tig0040550:6206-6225 None:intergenic 50.0%
! GTTGAGGAAAGGTGCAAGCA+GGG + tig0040550:6205-6224 Msa1459930:CDS 50.0%
! TTGAGGAAAGGTGCAAGCAG+GGG + tig0040550:6206-6225 Msa1459930:CDS 50.0%
GCTGATCCCATTCCAACCAC+AGG - tig0040550:5283-5302 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG + tig0040550:5811-5830 Msa1459930:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG - tig0040550:6204-6223 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG + tig0040550:6204-6223 Msa1459930:CDS 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG - tig0040550:6461-6480 None:intergenic 55.0%
GCTGATCCCATTCCAACCAC+AGG - tig0040550:5283-5302 None:intergenic 55.0%
! TGGCCACTTAGTTCTCAGCC+TGG + tig0040550:5811-5830 Msa1459930:CDS 55.0%
GCTTGCACCTTTCCTCAACG+GGG - tig0040550:6204-6223 None:intergenic 55.0%
! CGTTGAGGAAAGGTGCAAGC+AGG + tig0040550:6204-6223 Msa1459930:CDS 55.0%
! TCATTGAGTCCGGGCTTGGT+TGG - tig0040550:6461-6480 None:intergenic 55.0%
ATCCCTGGACCAACCAAGCC+CGG + tig0040550:6449-6468 Msa1459930:CDS 60.0%
GAGGTCATTGAGTCCGGGCT+TGG - tig0040550:6465-6484 None:intergenic 60.0%
ATCCCTGGACCAACCAAGCC+CGG + tig0040550:6449-6468 Msa1459930:CDS 60.0%
GAGGTCATTGAGTCCGGGCT+TGG - tig0040550:6465-6484 None:intergenic 60.0%
! GTCCGGGCTTGGTTGGTCCA+GGG - tig0040550:6454-6473 None:intergenic 65.0%
! AGTCCGGGCTTGGTTGGTCC+AGG - tig0040550:6455-6474 None:intergenic 65.0%
! GTCCGGGCTTGGTTGGTCCA+GGG - tig0040550:6454-6473 None:intergenic 65.0%
! AGTCCGGGCTTGGTTGGTCC+AGG - tig0040550:6455-6474 None:intergenic 65.0%
Chromosome Type Strat End Strand Name
tig0040550 gene 5163 6660 5163 ID=Msa1459930;Name=Msa1459930
tig0040550 mRNA 5163 6660 5163 ID=Msa1459930-mRNA-1;Parent=Msa1459930;Name=Msa1459930-mRNA-1;_AED=0.01;_eAED=0.01;_QI=57|1|1|1|1|1|3|164|312
tig0040550 exon 5163 5539 5163 ID=Msa1459930-mRNA-1:exon:22483;Parent=Msa1459930-mRNA-1
tig0040550 exon 5771 6014 5771 ID=Msa1459930-mRNA-1:exon:22484;Parent=Msa1459930-mRNA-1
tig0040550 exon 6122 6660 6122 ID=Msa1459930-mRNA-1:exon:22485;Parent=Msa1459930-mRNA-1
tig0040550 five_prime_UTR 5163 5219 5163 ID=Msa1459930-mRNA-1:five_prime_utr;Parent=Msa1459930-mRNA-1
tig0040550 CDS 5220 5539 5220 ID=Msa1459930-mRNA-1:cds;Parent=Msa1459930-mRNA-1
tig0040550 CDS 5771 6014 5771 ID=Msa1459930-mRNA-1:cds;Parent=Msa1459930-mRNA-1
tig0040550 CDS 6122 6496 6122 ID=Msa1459930-mRNA-1:cds;Parent=Msa1459930-mRNA-1
tig0040550 three_prime_UTR 6497 6660 6497 ID=Msa1459930-mRNA-1:three_prime_utr;Parent=Msa1459930-mRNA-1
Gene Sequence

>Msa1459930

ATGGGTAGTGTTGAAATTCCAACAAAGGTTCTTACAAACACATCTAGTCAATTGAAGATGCCTGTGGTTGGAATGGGATCAGCCCCTGACTTCACATGTAAGAAAGACACAAAAGATGCAATCATTGAAGCCATCAAACAAGGTTATAGACACTTTGATACTGCTGCTGCATATGGCTCAGAACAAGCTCTTGGAGAGGCTTTGAAAGAGGCAATTGAACTTGGTCTTGTCACTAGAGAAGACCTTTTTGTTACTTCTAAACTTTGGGTTACTGAAAATCATCCTCATCTTGTTATTCCTGCTCTTCAAAAATCTCTCAAGACTCTTCAACTAGACTACTTGGACTTGTACCTGATTCATTGGCCACTTAGTTCTCAGCCTGGAAAGTTTTCATTTCCAATTGATGTGGCAGATCTCTTGCCATTTGATGTGAAAGGTGTTTGGGAATCCATGGAGGAAAGCTTGAAACTTGGACTCACTAAAGCTATTGGAGTTAGTAACTTCTCTGTCAAGAAACTTGAAAATCTTCTCTCTGTCGCCACTGTTCTTCCTGCAGTCAATCAAGTGGAGATGAACCTTGCATGGCAACAAAAGAAGCTTAGAGAGTTTTGCAACGCACACGGAATAGTGTTAACCGCATTTTCCCCGTTGAGGAAAGGTGCAAGCAGGGGACCAAATGAAGTTATGGAGAATGATATGCTTAAAGAGATTGCAGATGCACATGGAAAGTCTGTTGCACAAATTTCTCTAAGATGGTTATATGAACAAGGAGTCACTTTTGTTCCCAAGAGCTATGATAAGGAGAGAATGGACCAAAATTTACGTATCTTTGATTGGTCATTGACAAAGGAGGATCATGAGAAAATTGCTCAAATTAAGCAAAATCGTTTGATCCCTGGACCAACCAAGCCCGGACTCAATGACCTCTATGATGACTAA

Protein sequence

>Msa1459930

MGSVEIPTKVLTNTSSQLKMPVVGMGSAPDFTCKKDTKDAIIEAIKQGYRHFDTAAAYGSEQALGEALKEAIELGLVTREDLFVTSKLWVTENHPHLVIPALQKSLKTLQLDYLDLYLIHWPLSSQPGKFSFPIDVADLLPFDVKGVWESMEESLKLGLTKAIGVSNFSVKKLENLLSVATVLPAVNQVEMNLAWQQKKLREFCNAHGIVLTAFSPLRKGASRGPNEVMENDMLKEIADAHGKSVAQISLRWLYEQGVTFVPKSYDKERMDQNLRIFDWSLTKEDHEKIAQIKQNRLIPGPTKPGLNDLYDD*