AlfalfaGEDB Alfalfa Gene Editing Database

M. sativa cultivar zhongmu-4 / Msa1104000


Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1104000 MtrunA17_Chr7g0234481 98.944 663 7 0 1 663 1 663 0.0 1351
Msa1104000 MtrunA17_Chr8g0338551 85.457 667 88 5 1 662 1 663 0.0 1141
Msa1104000 MtrunA17_Chr5g0448051 67.068 665 213 3 1 662 1 662 0.0 897
Msa1104000 MtrunA17_Chr5g0445111 68.371 626 195 2 1 626 1 623 0.0 874
Query id Subject id identity % alignment length mismatches gap openings q. start q. end s. start s. end e-value bit score
Msa1104000 AT5G48460.1 76.399 661 148 4 1 660 1 654 0.0 1029
Msa1104000 AT5G35700.1 64.848 660 223 3 1 654 1 657 0.0 885
Msa1104000 AT4G26700.4 66.933 626 204 3 1 626 1 623 0.0 869
Msa1104000 AT4G26700.2 66.933 626 204 3 1 626 1 623 0.0 869
Msa1104000 AT4G26700.1 66.933 626 204 3 1 626 1 623 0.0 869
Msa1104000 AT5G55400.1 66.561 628 204 5 1 626 1 624 0.0 862
Msa1104000 AT5G55400.2 66.561 628 204 5 1 626 1 624 0.0 862
Msa1104000 AT5G55400.3 66.561 628 204 5 1 626 1 624 0.0 862
Msa1104000 AT2G04750.1 62.879 660 232 4 1 656 1 651 0.0 835
Msa1104000 AT4G26700.5 65.913 575 193 3 1 575 1 572 0.0 780
Msa1104000 AT4G26700.6 65.913 575 193 3 1 575 1 572 0.0 780
Msa1104000 AT4G26700.3 65.913 575 193 3 1 575 1 572 0.0 780
Msa1104000 AT4G26700.7 72.707 458 123 2 169 626 19 474 0.0 691

Find 109 sgRNAs with CRISPR-Local

Find 526 sgRNAs with CRISPR-GE


CRISPR-Local

CRISPR-Local
sgRNA_sequence on_target_score Position Region
TGTAACCAAGTTGTGAAAAT+TGG 0.132470 7_3:-40537912 Msa1104000:CDS
ATGGAACAAGGACACCATTT+TGG 0.212285 7_3:+40541978 None:intergenic
TATCACCTGGGATTGTTAAT+TGG 0.244222 7_3:-40537986 Msa1104000:CDS
GTTAAATTAGATACAATTAT+TGG 0.249136 7_3:-40539421 Msa1104000:intron
AAAGAAAACTCCTCAACTTT+TGG 0.252764 7_3:-40539385 Msa1104000:CDS
CAAAAGACGGTGTTCTTCTT+TGG 0.259070 7_3:-40540190 Msa1104000:intron
TCTGATTTCACAGATTATTA+AGG 0.263980 7_3:-40539555 Msa1104000:intron
GTCATAGTTCAAAGTTGTTT+TGG 0.296144 7_3:+40542015 None:intergenic
CTCACGCATGCTTGACTCAC+TGG 0.320607 7_3:+40531334 None:intergenic
ATACCTTGAAACTATATATA+TGG 0.330804 7_3:+40537395 None:intergenic
TCAAGTTCTTTAGAAGTTGT+AGG 0.351383 7_3:+40537503 None:intergenic
TACAACCTAGAGCTGTGAAT+TGG 0.353089 7_3:-40536766 Msa1104000:CDS
TCTAGTTATGTCAAGTCATT+GGG 0.355430 7_3:-40541800 Msa1104000:exon
ATCAAGTGTTGAATTTGATA+TGG 0.364286 7_3:+40535484 None:intergenic
TTCTAGTTATGTCAAGTCAT+TGG 0.364676 7_3:-40541801 Msa1104000:exon
AGCTCTTCCCGGTCCCAAAA+TGG 0.367637 7_3:-40541992 Msa1104000:five_prime_UTR
TGAAACTATATATATGGCTT+TGG 0.379514 7_3:+40537401 None:intergenic
TTTCGATATTTCACCCGTTC+CGG 0.380068 7_3:+40538450 None:intergenic
GTAACCAAGTTGTGAAAATT+GGG 0.383144 7_3:-40537911 Msa1104000:CDS
ACAACCTAGAGCTGTGAATT+GGG 0.394703 7_3:-40536765 Msa1104000:CDS
ACAAAAGCAAGGTTAAGATT+TGG 0.396410 7_3:+40538724 None:intergenic
CTTGTGACAAACGGAGTAAC+TGG 0.397635 7_3:-40536740 Msa1104000:intron
ATTCAAAAGGTGAAAGTGTC+TGG 0.405186 7_3:+40541935 None:intergenic
GAAGTTCAACTTGTGTAAAC+TGG 0.405591 7_3:+40541746 None:intergenic
TTTCAGCGTCATTTGGTACT+AGG 0.405655 7_3:-40539578 Msa1104000:intron
ATCAGTATTGCAAGAAAACT+TGG 0.410928 7_3:-40535734 Msa1104000:CDS
ACTACCTCAGTGATGTCTTC+AGG 0.412757 7_3:+40535692 None:intergenic
CTCAACTCTGCTAAAGCAAT+TGG 0.419451 7_3:-40539968 Msa1104000:CDS
TGTCGATGGATTAGTGTATT+CGG 0.420155 7_3:+40538852 None:intergenic
CGGATGCAAGAACATTTAGA+AGG 0.432762 7_3:+40538872 None:intergenic
TGAACTATGACAGCTCTTCC+CGG 0.433364 7_3:-40542003 Msa1104000:five_prime_UTR
TGTAACATATGACGCCTTCT+CGG 0.436472 7_3:+40540298 None:intergenic
AAATTTCTCCTCCGATGTTA+AGG 0.437955 7_3:-40539161 Msa1104000:intron
CTTAACTGCAAGAGATATAG+TGG 0.441515 7_3:-40538755 Msa1104000:CDS
TTATATCAACAATGTGTTTG+AGG 0.443341 7_3:-40538477 Msa1104000:CDS
TTATACTTGCTGTTAGTGTA+AGG 0.443705 7_3:+40535579 None:intergenic
ATGTCAAGATTAAAAGTTGT+AGG 0.444101 7_3:-40541181 Msa1104000:CDS
TCACGCATGCTTGACTCACT+GGG 0.445219 7_3:+40531335 None:intergenic
GTTCTTTCTTCAACAACAGC+AGG 0.445597 7_3:+40535536 None:intergenic
AACTTGAGATTTCACTCTCA+TGG 0.447009 7_3:-40537487 Msa1104000:CDS
ATGCTTGACTCACTGGGGCT+TGG 0.450229 7_3:+40531341 None:intergenic
TATCTAAAAGGTGATTCAAA+AGG 0.452199 7_3:+40541922 None:intergenic
GTTTGATCCGTCATTAAATC+CGG 0.461490 7_3:+40535116 None:intergenic
GGCACTCAAGACTTAATTGA+AGG 0.463220 7_3:-40539926 Msa1104000:CDS
AAGCCATATATATAGTTTCA+AGG 0.477750 7_3:-40537398 Msa1104000:intron
TGATTCTGATATTCTGCAAT+GGG 0.477771 7_3:-40537452 Msa1104000:CDS
CAAAGAGATCGTTGGTTGAA+GGG 0.478637 7_3:+40540219 None:intergenic
GTATTATAGTTTCAGATCCA+TGG 0.487713 7_3:-40541777 Msa1104000:CDS
GCTGGTTGGTTGGGATAGTA+AGG 0.490164 7_3:-40539361 Msa1104000:intron
ACAATGTGTTTGAGGATGTC+CGG 0.491002 7_3:-40538469 Msa1104000:CDS
GAGAGTGGAAAGCTTACCAT+TGG 0.491598 7_3:-40541220 Msa1104000:CDS
AAGAGTGTTAGAGAAGGAGA+TGG 0.497113 7_3:+40541959 None:intergenic
ACTTGAGATTTCACTCTCAT+GGG 0.497508 7_3:-40537486 Msa1104000:CDS
AAAATCTTAGTGAAGAAGAG+AGG 0.502293 7_3:-40541156 Msa1104000:CDS
TATACATAGTCTCATTGCAT+TGG 0.503775 7_3:-40541892 Msa1104000:five_prime_UTR
TGCGATTTCAAAGAGATCGT+TGG 0.511155 7_3:+40540211 None:intergenic
AAATCTTAGTGAAGAAGAGA+GGG 0.512349 7_3:-40541155 Msa1104000:CDS
TAACAGCAAGTATAATGTAT+TGG 0.514555 7_3:-40535571 Msa1104000:CDS
CGTCTTTGGATTAATAGTCT+CGG 0.517396 7_3:-40538509 Msa1104000:CDS
CAGGATAAAAGTTTATCAGA+TGG 0.519978 7_3:-40536818 Msa1104000:CDS
TGCTGGAAATGACATTGTGC+AGG 0.520251 7_3:-40537859 Msa1104000:CDS
TCTGGAAAGAGTGTTAGAGA+AGG 0.521152 7_3:+40541953 None:intergenic
ATCTTCCAATTAACAATCCC+AGG 0.521674 7_3:+40537981 None:intergenic
AACACCAAAGTGAAAAGCTC+AGG 0.525202 7_3:-40537427 Msa1104000:CDS
TCAAAGAGATCGTTGGTTGA+AGG 0.525890 7_3:+40540218 None:intergenic
GCGCGTTCATCGATAGTTGT+CGG 0.527996 7_3:+40540049 None:intergenic
CTCAAGACTTAATTGAAGGA+AGG 0.528851 7_3:-40539922 Msa1104000:CDS
GGCTATTCCGGATTTAATGA+CGG 0.530422 7_3:-40535123 Msa1104000:CDS
CTGATTCTGATATTCTGCAA+TGG 0.530863 7_3:-40537453 Msa1104000:CDS
TGTTTGAGGATGTCCGGAAC+GGG 0.550714 7_3:-40538463 Msa1104000:intron
ATGATCATGAGGAGAGAGAG+TGG 0.558769 7_3:-40541235 Msa1104000:CDS
ACTCTTGACAAGGTATCACC+TGG 0.562336 7_3:-40537999 Msa1104000:CDS
CAAGAGGAAGGTATTTCTTG+AGG 0.564052 7_3:+40540243 None:intergenic
TTGCAGTAAACTTATTAATG+TGG 0.564607 7_3:-40540077 Msa1104000:intron
CAATTGCTTTAGCAGAGTTG+AGG 0.565005 7_3:+40539969 None:intergenic
TTCTTTCTTCAACAACAGCA+GGG 0.571960 7_3:+40535537 None:intergenic
TTCAGATTGTGAGAGTCAAG+TGG 0.578175 7_3:-40535510 Msa1104000:CDS
CTCTTTGAAATCGCAAAAGA+CGG 0.578489 7_3:-40540203 Msa1104000:CDS
TCAAGACTTAATTGAAGGAA+GGG 0.582324 7_3:-40539921 Msa1104000:intron
AGACCCCAATTCACAGCTCT+AGG 0.587212 7_3:+40536761 None:intergenic
TTAAATGGCATCTTTATGGG+AGG 0.589786 7_3:+40537948 None:intergenic
ATACACTAATCCATCGACAT+TGG 0.593571 7_3:-40538848 Msa1104000:CDS
CTCTAGGTTGTACAGAACTC+AGG 0.593953 7_3:+40536777 None:intergenic
CACAATAAGTGAATCCGAGA+AGG 0.597458 7_3:-40540312 Msa1104000:CDS
ATTTCCAGCAATATTTACCA+AGG 0.600710 7_3:+40537872 None:intergenic
GGATGTACCGTAGTCAACAT+TGG 0.605781 7_3:-40539947 Msa1104000:CDS
TTGAGTGCCAATGTTGACTA+CGG 0.609361 7_3:+40539940 None:intergenic
TTAGAGAAGGAGATGGAACA+AGG 0.609993 7_3:+40541966 None:intergenic
TGGTTGAAGGGTCAAGAGGA+AGG 0.612119 7_3:+40540231 None:intergenic
AAATTCTTCAGCATTCCTCA+AGG 0.614907 7_3:-40540357 Msa1104000:CDS
GATTGTAGTTCATGATCATG+AGG 0.618073 7_3:-40541246 Msa1104000:intron
AAATATGCGCAACAAAAGCA+AGG 0.619409 7_3:+40538713 None:intergenic
CAACCTAGAGCTGTGAATTG+GGG 0.619563 7_3:-40536764 Msa1104000:CDS
AATTGGGGTCTTGTGACAAA+CGG 0.625608 7_3:-40536749 Msa1104000:CDS
ATTTGAAGACAAGTCTCCAA+TGG 0.628299 7_3:+40541204 None:intergenic
CCAACCAGCTCCAAAAGTTG+AGG 0.628409 7_3:+40539375 None:intergenic
ACTGCAAGAGATATAGTGGA+AGG 0.638405 7_3:-40538751 Msa1104000:CDS
GTGTTTGAGGATGTCCGGAA+CGG 0.640103 7_3:-40538464 Msa1104000:CDS
TCGTTGGTTGAAGGGTCAAG+AGG 0.646684 7_3:+40540227 None:intergenic
CACAGCTACCTTAACATCGG+AGG 0.646965 7_3:+40539153 None:intergenic
TGTGTGAAGCAATGTTGTAG+TGG 0.648045 7_3:+40540331 None:intergenic
TATCATCTAGCAATGAGTCA+AGG 0.651529 7_3:+40538561 None:intergenic
ATGTTGTAGTGGCAACCTTG+AGG 0.654723 7_3:+40540342 None:intergenic
GCTGGAAATGACATTGTGCA+GGG 0.658379 7_3:-40537858 Msa1104000:CDS
ATGCACAGCTACCTTAACAT+CGG 0.668087 7_3:+40539150 None:intergenic
CACGCATGCTTGACTCACTG+GGG 0.676171 7_3:+40531336 None:intergenic
CTCTTGACAAGGTATCACCT+GGG 0.685626 7_3:-40537998 Msa1104000:CDS
CTAGTTATGTCAAGTCATTG+GGG 0.700266 7_3:-40541799 Msa1104000:exon
GCTTCCTGAAGACATCACTG+AGG 0.793102 7_3:-40535696 Msa1104000:intron

CRISPR-GE

badsite warning sgRNA_sequence Strand Position Region GC_content
!!! AAAATCTAATCTTTTTTTTT+TGG + chr7_3:40531877-40531896 None:intergenic 10.0%
!! TTCATATTTATTAAAATAAC+AGG - chr7_3:40534081-40534100 Msa1104000:intron 10.0%
!!! CATTTTTTTTTATATTTTAC+AGG - chr7_3:40535322-40535341 Msa1104000:intron 10.0%
!!! TTCAATTTTTTCAAATTATT+AGG - chr7_3:40535712-40535731 Msa1104000:CDS 10.0%
!! AAATAAAAAATCAATCATAA+TGG + chr7_3:40535802-40535821 None:intergenic 10.0%
!!! TTATAATTTTTTCAAATTTC+AGG - chr7_3:40536522-40536541 Msa1104000:intron 10.0%
!!! TTATTTTGATATTATATGTT+CGG + chr7_3:40538345-40538364 None:intergenic 10.0%
!!! TAAAAGAACATATTATTTTT+AGG + chr7_3:40538665-40538684 None:intergenic 10.0%
!! AAACATTCAAATAATTTAAA+GGG + chr7_3:40540712-40540731 None:intergenic 10.0%
!! AAAACATTCAAATAATTTAA+AGG + chr7_3:40540713-40540732 None:intergenic 10.0%
!!! TTATTAAATTTTGGTTAATT+TGG - chr7_3:40541289-40541308 Msa1104000:intron 10.0%
!!! TAATATTGATTATTGTTAAA+CGG - chr7_3:40541327-40541346 Msa1104000:intron 10.0%
!!! GTATATGAATTTTATCTAAA+AGG + chr7_3:40531452-40531471 None:intergenic 15.0%
!!! AATCATATATTTACTTTTTG+TGG - chr7_3:40531705-40531724 Msa1104000:intron 15.0%
!! AATATCTTAAAAAATGATGA+TGG + chr7_3:40531931-40531950 None:intergenic 15.0%
!! AAAATACTAGAAAGTAAAAA+AGG + chr7_3:40532392-40532411 None:intergenic 15.0%
!! TTTGAGAAAATAAAAGTAAT+TGG - chr7_3:40532597-40532616 Msa1104000:intron 15.0%
!! TTGAGAAAATAAAAGTAATT+GGG - chr7_3:40532598-40532617 Msa1104000:intron 15.0%
!!! TTTTTATTCTTACATTTTGT+AGG - chr7_3:40533732-40533751 Msa1104000:intron 15.0%
!! GTTAAATTAGATACAATTAT+TGG - chr7_3:40533938-40533957 Msa1104000:intron 15.0%
!! TTTATTAAAATAACAGGATA+TGG - chr7_3:40534087-40534106 Msa1104000:intron 15.0%
!!! TTTTTTTTATATTTTACAGG+TGG - chr7_3:40535325-40535344 Msa1104000:intron 15.0%
!!! TTTTTTTATATTTTACAGGT+GGG - chr7_3:40535326-40535345 Msa1104000:intron 15.0%
!! GGATATAAAAAATTAATACT+AGG - chr7_3:40535522-40535541 Msa1104000:CDS 15.0%
!! CTAATGAAAAACATATTAAA+TGG + chr7_3:40535608-40535627 None:intergenic 15.0%
!!! TTTTTATTTTAGCATATTTG+TGG - chr7_3:40535813-40535832 Msa1104000:intron 15.0%
!!! AATTATTAGTTTGTAAACTT+CGG - chr7_3:40536201-40536220 Msa1104000:intron 15.0%
!! ACATATAAAAAAAAAGAATC+TGG + chr7_3:40536691-40536710 None:intergenic 15.0%
!!! TTTTTAAAGTAATCACTTTT+AGG + chr7_3:40537065-40537084 None:intergenic 15.0%
!!! TTTTTTGATAATCATGATAT+TGG - chr7_3:40537232-40537251 Msa1104000:intron 15.0%
!!! TAGAAAAAATTTGTTTAAGT+GGG + chr7_3:40537336-40537355 None:intergenic 15.0%
!!! ATAGAAAAAATTTGTTTAAG+TGG + chr7_3:40537337-40537356 None:intergenic 15.0%
!! TTGAGAATTTATTGTTTATT+CGG + chr7_3:40538033-40538052 None:intergenic 15.0%
!! CAAAAATATCACAAAAAAAA+TGG - chr7_3:40538057-40538076 Msa1104000:intron 15.0%
!! GAATACAAATTATTTATTTC+AGG - chr7_3:40538202-40538221 Msa1104000:intron 15.0%
!! TCATATAAATACAATTTGAT+TGG + chr7_3:40538477-40538496 None:intergenic 15.0%
!!! ATATATATAGTCTTCATTTT+AGG + chr7_3:40539734-40539753 None:intergenic 15.0%
!! AAAATAGTAAATTAAGAGAT+AGG - chr7_3:40540419-40540438 Msa1104000:intron 15.0%
!!! TATAACATTGTTATTAAAGA+TGG - chr7_3:40541478-40541497 Msa1104000:intron 15.0%
!!! AATCAAAATCTAATCCTTTT+TGG + chr7_3:40531736-40531755 None:intergenic 20.0%
!! AATAAAAATCCAATCTTTCT+AGG + chr7_3:40532042-40532061 None:intergenic 20.0%
!! CATTTCATATGTATTGAAAT+TGG + chr7_3:40532456-40532475 None:intergenic 20.0%
!! CAATTTCAATACATATGAAA+TGG - chr7_3:40532454-40532473 Msa1104000:intron 20.0%
!! AATCAAACACTTAAATTTGA+TGG + chr7_3:40532886-40532905 None:intergenic 20.0%
!! AAAAAGATTACTTAATCCTT+GGG - chr7_3:40533342-40533361 Msa1104000:intron 20.0%
!! GTAAGAATAAAAATAGAGAA+GGG + chr7_3:40533725-40533744 None:intergenic 20.0%
!! TGTAAGAATAAAAATAGAGA+AGG + chr7_3:40533726-40533745 None:intergenic 20.0%
!! TAAAAGATAATAGTGAAGAA+CGG + chr7_3:40534031-40534050 None:intergenic 20.0%
!!! TATATTCTGTTTTCTTCAAA+TGG + chr7_3:40534165-40534184 None:intergenic 20.0%
!! ACAGTTTAATTATCTTGAAA+CGG + chr7_3:40534298-40534317 None:intergenic 20.0%
!! TAATTCAATTTCTTTGTAAC+AGG - chr7_3:40534740-40534759 Msa1104000:intron 20.0%
!!! AAAGTTTTGTTCAAATACTA+CGG + chr7_3:40535092-40535111 None:intergenic 20.0%
!!! TTTTTAAATGGCATCTTTAT+GGG + chr7_3:40535417-40535436 None:intergenic 20.0%
!!! TTTTTTAAATGGCATCTTTA+TGG + chr7_3:40535418-40535437 None:intergenic 20.0%
!!! CAATTCTCTACTTTTTTAAA+TGG + chr7_3:40535429-40535448 None:intergenic 20.0%
!!! ATTGATTCACTATAATTTGT+AGG + chr7_3:40535561-40535580 None:intergenic 20.0%
!! TGAAAAACATATTAAATGGT+TGG + chr7_3:40535604-40535623 None:intergenic 20.0%
!! ATACCTTGAAACTATATATA+TGG + chr7_3:40535967-40535986 None:intergenic 20.0%
!! TGAATGATGAATAAGATTAA+GGG + chr7_3:40536058-40536077 None:intergenic 20.0%
!! GAAGTTTACAAACTAATAAT+TGG + chr7_3:40536202-40536221 None:intergenic 20.0%
!!! TTATTCACTTTTATGTATTC+AGG - chr7_3:40536474-40536493 Msa1104000:intron 20.0%
!!! TATTCACTTTTATGTATTCA+GGG - chr7_3:40536475-40536494 Msa1104000:intron 20.0%
!! AAAAAAAAGAATCTGGAAAA+AGG + chr7_3:40536684-40536703 None:intergenic 20.0%
!! TAAGTTTATAAAAGCTATCA+TGG - chr7_3:40537085-40537104 Msa1104000:intron 20.0%
!!! ATTGATTTTTTTTTAAGGGA+GGG + chr7_3:40537210-40537229 None:intergenic 20.0%
!!! TATTGATTTTTTTTTAAGGG+AGG + chr7_3:40537211-40537230 None:intergenic 20.0%
!!! AGAAAAAATTTGTTTAAGTG+GGG + chr7_3:40537335-40537354 None:intergenic 20.0%
!!! ACAAATTTTTTCTATTCACA+AGG - chr7_3:40537342-40537361 Msa1104000:intron 20.0%
!!! CAAATTTTTTCTATTCACAA+GGG - chr7_3:40537343-40537362 Msa1104000:intron 20.0%
!!! AAATTGTATCATTTGAAACA+TGG - chr7_3:40537495-40537514 Msa1104000:CDS 20.0%
!!! CTTATGAAAAAGTTTTGTTA+TGG - chr7_3:40537948-40537967 Msa1104000:CDS 20.0%
!! TTATTTCAGGAAAAATGATT+TGG - chr7_3:40538215-40538234 Msa1104000:intron 20.0%
!!! TTTTGGTGTTAAATTAGTTA+CGG - chr7_3:40538775-40538794 Msa1104000:CDS 20.0%
!! AATCAACATTGCAAAATTAT+AGG - chr7_3:40538826-40538845 Msa1104000:CDS 20.0%
!! ATCAACATTGCAAAATTATA+GGG - chr7_3:40538827-40538846 Msa1104000:CDS 20.0%
!!! TTAAAATTTTACACACTCTT+CGG - chr7_3:40539171-40539190 Msa1104000:CDS 20.0%
!! GAGAATTTATTATTATCTCA+AGG - chr7_3:40539253-40539272 Msa1104000:CDS 20.0%
!!! ATTGGTTTCCATTTTATTTA+GGG - chr7_3:40539403-40539422 Msa1104000:CDS 20.0%
!! TACTACTTTATTGTTTGAAA+CGG + chr7_3:40540340-40540359 None:intergenic 20.0%
!!! AATAATTTTTATGGGTAAAG+TGG - chr7_3:40540598-40540617 Msa1104000:intron 20.0%
!!! CTACGCAAAAATAATAATTT+TGG - chr7_3:40540873-40540892 Msa1104000:intron 20.0%
!!! CAATCCTTCAAAATAATTTT+TGG - chr7_3:40541215-40541234 Msa1104000:CDS 20.0%
!!! CTTGAAAGCTTATTAAATTT+TGG - chr7_3:40541280-40541299 Msa1104000:intron 20.0%
!! GGAAAGTAATGTATAATATT+TGG - chr7_3:40541597-40541616 Msa1104000:intron 20.0%
!!! ATTTAATGACTCTTTTGATA+TGG - chr7_3:40541714-40541733 Msa1104000:intron 20.0%
! TATCTAAAAGGTGATTCAAA+AGG + chr7_3:40531440-40531459 None:intergenic 25.0%
! TTCATTGTAATTAAGCTTCT+TGG - chr7_3:40531904-40531923 Msa1104000:intron 25.0%
! TCATTGTAATTAAGCTTCTT+GGG - chr7_3:40531905-40531924 Msa1104000:intron 25.0%
! TTGTTGATCATACTATTGTT+TGG - chr7_3:40531949-40531968 Msa1104000:intron 25.0%
!!! GAGACATGATCATTTTTTTA+TGG - chr7_3:40532085-40532104 Msa1104000:intron 25.0%
! ATGTCAAGATTAAAAGTTGT+AGG - chr7_3:40532178-40532197 Msa1104000:intron 25.0%
!!! TGATTTTGAATTGTTTCTCA+AGG - chr7_3:40532270-40532289 Msa1104000:intron 25.0%
!! AAGGTGAATTTTTGTTAACT+TGG - chr7_3:40532289-40532308 Msa1104000:intron 25.0%
! AATAGATCAGAATTACCAAA+AGG + chr7_3:40532353-40532372 None:intergenic 25.0%
! AAAGTAAAAAAGGTAACTTG+TGG + chr7_3:40532382-40532401 None:intergenic 25.0%
! TCAATACATATGAAATGGAA+AGG - chr7_3:40532459-40532478 Msa1104000:intron 25.0%
!! AGTATTTTCTTTTCCATCTT+TGG - chr7_3:40532506-40532525 Msa1104000:intron 25.0%
! TGTCTAATGTAAAGAAAAAG+TGG + chr7_3:40532721-40532740 None:intergenic 25.0%
! AATTGAAGAGCTGAAAAATA+TGG + chr7_3:40532804-40532823 None:intergenic 25.0%
! TTTAATGCTAAACACCATAA+GGG - chr7_3:40532830-40532849 Msa1104000:intron 25.0%
!! CACTTAAATTTGATGGTTTA+AGG + chr7_3:40532879-40532898 None:intergenic 25.0%
!!! ATTTAAGTGTTTGATTTGAG+TGG - chr7_3:40532890-40532909 Msa1104000:intron 25.0%
! ATTTGAGTGGTATCAAATAA+TGG - chr7_3:40532903-40532922 Msa1104000:intron 25.0%
!! TTAATATGCCAGCATTTTTA+TGG - chr7_3:40533231-40533250 Msa1104000:intron 25.0%
! AAATGTTTCCATAAAAATGC+TGG + chr7_3:40533242-40533261 None:intergenic 25.0%
! TTGCAGTAAACTTATTAATG+TGG - chr7_3:40533282-40533301 Msa1104000:intron 25.0%
! CAAAAAGATTACTTAATCCT+TGG - chr7_3:40533341-40533360 Msa1104000:intron 25.0%
! ATCAATCCTAAGAAAATGTA+AGG + chr7_3:40533660-40533679 None:intergenic 25.0%
!! TATTCTTACATTTTGTAGGT+TGG - chr7_3:40533736-40533755 Msa1104000:intron 25.0%
! TCTGATTTCACAGATTATTA+AGG - chr7_3:40533804-40533823 Msa1104000:intron 25.0%
! TTTAATTATCTTGAAACGGA+GGG + chr7_3:40534294-40534313 None:intergenic 25.0%
! AGATAATTAAACTGTTCTTG+TGG - chr7_3:40534303-40534322 Msa1104000:intron 25.0%
! CATCAACATATATATTCTTG+TGG - chr7_3:40534436-40534455 Msa1104000:intron 25.0%
! TTATATCAACAATGTGTTTG+AGG - chr7_3:40534882-40534901 Msa1104000:intron 25.0%
! TTCTATCATGCAAAGAATTA+GGG + chr7_3:40535126-40535145 None:intergenic 25.0%
! TTTCTATCATGCAAAGAATT+AGG + chr7_3:40535127-40535146 None:intergenic 25.0%
! AGTGAATAGAATAGTGAATA+TGG + chr7_3:40535248-40535267 None:intergenic 25.0%
! TGAAACTATATATATGGCTT+TGG + chr7_3:40535961-40535980 None:intergenic 25.0%
! AAGCCATATATATAGTTTCA+AGG - chr7_3:40535961-40535980 Msa1104000:intron 25.0%
! CTTTACATCAAGTTCTTAAA+GGG + chr7_3:40536008-40536027 None:intergenic 25.0%
! GTGAATGATGAATAAGATTA+AGG + chr7_3:40536059-40536078 None:intergenic 25.0%
! GATTGCAAATTAATGTATCA+TGG + chr7_3:40536247-40536266 None:intergenic 25.0%
! TTTATGTATTCAGGGATTAA+TGG - chr7_3:40536483-40536502 Msa1104000:intron 25.0%
!!! ATCAGATGGAATATTTTTTC+TGG - chr7_3:40536555-40536574 Msa1104000:intron 25.0%
! TCAAAGATTCAACAAGTAAA+AGG + chr7_3:40536653-40536672 None:intergenic 25.0%
! AAACAAAGAATCAAAAGTTG+TGG + chr7_3:40536752-40536771 None:intergenic 25.0%
! TATGATCTCTCAAACAATAT+GGG + chr7_3:40536807-40536826 None:intergenic 25.0%
! TTATGATCTCTCAAACAATA+TGG + chr7_3:40536808-40536827 None:intergenic 25.0%
! TTAAAACAGTTAGAATCTGA+AGG + chr7_3:40537019-40537038 None:intergenic 25.0%
!!! TGATTATTCCTGTCTTATTT+TGG - chr7_3:40537111-40537130 Msa1104000:intron 25.0%
!!! TTATTTTGGTTGTGATACAT+GGG - chr7_3:40537125-40537144 Msa1104000:intron 25.0%
! AAATTAGTCATCACCAAAAT+CGG + chr7_3:40537271-40537290 None:intergenic 25.0%
!!! ATTTTGATGTATGTTTCATG+TGG + chr7_3:40537479-40537498 None:intergenic 25.0%
!!! ATGTTTTTGTTGACAAATCA+TGG + chr7_3:40537533-40537552 None:intergenic 25.0%
! ACATGCTTCATATTCATATT+TGG - chr7_3:40537556-40537575 Msa1104000:intron 25.0%
! TAACAGCAAGTATAATGTAT+TGG - chr7_3:40537788-40537807 Msa1104000:intron 25.0%
!!! ATCAAGTGTTGAATTTGATA+TGG + chr7_3:40537878-40537897 None:intergenic 25.0%
! TTGTTATGGATATATATGAG+AGG - chr7_3:40537962-40537981 Msa1104000:CDS 25.0%
!!! TATTGTTTATTCGGTGTAAA+TGG + chr7_3:40538024-40538043 None:intergenic 25.0%
! TCAAACATGTGAAAAAGATA+AGG - chr7_3:40538260-40538279 Msa1104000:intron 25.0%
! ATATTATATGTTCGGTTGTT+TGG + chr7_3:40538337-40538356 None:intergenic 25.0%
! ATTATTAGTGTGTAGAATTG+AGG - chr7_3:40538403-40538422 Msa1104000:intron 25.0%
! TAGTCGACATTGATATAAAA+GGG + chr7_3:40538449-40538468 None:intergenic 25.0%
! TTAGTCGACATTGATATAAA+AGG + chr7_3:40538450-40538469 None:intergenic 25.0%
!!! TTTGGTGTTAAATTAGTTAC+GGG - chr7_3:40538776-40538795 Msa1104000:CDS 25.0%
! TCAACATTGCAAAATTATAG+GGG - chr7_3:40538828-40538847 Msa1104000:CDS 25.0%
! AATCACCATTGCAAAATTAT+AGG - chr7_3:40538983-40539002 Msa1104000:intron 25.0%
! ATCACCATTGCAAAATTATA+GGG - chr7_3:40538984-40539003 Msa1104000:intron 25.0%
! GCGTTAAATTTAATAGAAAG+AGG - chr7_3:40539076-40539095 Msa1104000:intron 25.0%
!! TAAAATTTTACACACTCTTC+GGG - chr7_3:40539172-40539191 Msa1104000:CDS 25.0%
! AAATCAAGTGGTAAATACTT+TGG - chr7_3:40539199-40539218 Msa1104000:CDS 25.0%
! TCTATTAACTAGCAAAGTAA+AGG + chr7_3:40539287-40539306 None:intergenic 25.0%
!!! ACATCTTTTTTAGACTCTAA+GGG - chr7_3:40539341-40539360 Msa1104000:intron 25.0%
! AAATGGAAACCAATCTATTA+AGG + chr7_3:40539397-40539416 None:intergenic 25.0%
!!! GATTGGTTTCCATTTTATTT+AGG - chr7_3:40539402-40539421 Msa1104000:CDS 25.0%
! CACTTTACCCATAAAAATTT+GGG + chr7_3:40539599-40539618 None:intergenic 25.0%
!! TGATTTTGTTCTGTGATTTA+TGG + chr7_3:40539885-40539904 None:intergenic 25.0%
! ACAGAACAAAATCATTATGT+AGG - chr7_3:40539891-40539910 Msa1104000:intron 25.0%
! AAACACCATATTTACCTAAT+TGG + chr7_3:40540214-40540233 None:intergenic 25.0%
!!! AAATCATAAGCTCTAGAATA+GGG - chr7_3:40540286-40540305 Msa1104000:CDS 25.0%
! GTCAAAAAGAGAAATTCAAA+TGG + chr7_3:40540374-40540393 None:intergenic 25.0%
! AATTAAGAGATAGGAAAGAT+CGG - chr7_3:40540428-40540447 Msa1104000:intron 25.0%
! ATTTAAAAAATTTAGTGCCC+TGG - chr7_3:40540667-40540686 Msa1104000:intron 25.0%
! TTTAAAAAATTTAGTGCCCT+GGG - chr7_3:40540668-40540687 Msa1104000:intron 25.0%
!!! CCTACCAAAAATTATTTTGA+AGG + chr7_3:40541222-40541241 None:intergenic 25.0%
!!! CCTTCAAAATAATTTTTGGT+AGG - chr7_3:40541219-40541238 Msa1104000:CDS 25.0%
! ATTAAGTAAAGTCAATCTCA+AGG + chr7_3:40541428-40541447 None:intergenic 25.0%
! TAATTATGAAGAATATGTCG+TGG - chr7_3:40541444-40541463 Msa1104000:intron 25.0%
! AACATACTACATTACACATA+GGG + chr7_3:40541653-40541672 None:intergenic 25.0%
! AAACATACTACATTACACAT+AGG + chr7_3:40541654-40541673 None:intergenic 25.0%
!! GCATATCATCAAAATTTTGA+TGG - chr7_3:40541945-40541964 Msa1104000:five_prime_UTR 25.0%
! GTCATAGTTCAAAGTTGTTT+TGG + chr7_3:40531347-40531366 None:intergenic 30.0%
TATACATAGTCTCATTGCAT+TGG - chr7_3:40531467-40531486 Msa1104000:intron 30.0%
! TTCTAGTTATGTCAAGTCAT+TGG - chr7_3:40531558-40531577 Msa1104000:intron 30.0%
TCTAGTTATGTCAAGTCATT+GGG - chr7_3:40531559-40531578 Msa1104000:intron 30.0%
GTATTATAGTTTCAGATCCA+TGG - chr7_3:40531582-40531601 Msa1104000:intron 30.0%
TCATCAAACTATTGTTTGCT+TGG - chr7_3:40531659-40531678 Msa1104000:intron 30.0%
! TTTTTGTGGATTCTCCAAAA+AGG - chr7_3:40531719-40531738 Msa1104000:intron 30.0%
TTTCATTGTAATTCAGCTTC+TGG - chr7_3:40531758-40531777 Msa1104000:intron 30.0%
TTCATTGTAATTCAGCTTCT+GGG - chr7_3:40531759-40531778 Msa1104000:intron 30.0%
TTGTTGATCATACTATTGCT+TGG - chr7_3:40531793-40531812 Msa1104000:intron 30.0%
AAAATCTTAGTGAAGAAGAG+AGG - chr7_3:40532203-40532222 Msa1104000:intron 30.0%
AAATCTTAGTGAAGAAGAGA+GGG - chr7_3:40532204-40532223 Msa1104000:intron 30.0%
!!! AGTCTGCTTTTTAAGTGTAT+TGG - chr7_3:40532318-40532337 Msa1104000:intron 30.0%
!!! TATTGGTTCTTTTTGCCTTT+TGG - chr7_3:40532335-40532354 Msa1104000:intron 30.0%
ATTAGACACAAAAAGAAGAG+AGG - chr7_3:40532733-40532752 Msa1104000:intron 30.0%
CTTTAATGCTAAACACCATA+AGG - chr7_3:40532829-40532848 Msa1104000:intron 30.0%
ACCATAAGGGACTTAAAATT+TGG - chr7_3:40532843-40532862 Msa1104000:intron 30.0%
!! TCCAAATTTTAAGTCCCTTA+TGG + chr7_3:40532847-40532866 None:intergenic 30.0%
! AGGGACTTAAAATTTGGAAT+TGG - chr7_3:40532849-40532868 Msa1104000:intron 30.0%
! TGATTTTCATTTCTTTCCCA+AGG + chr7_3:40533361-40533380 None:intergenic 30.0%
TCAAGACTTAATTGAAGGAA+GGG - chr7_3:40533438-40533457 Msa1104000:intron 30.0%
!!! CATGTTGTGACTTTTTTACA+CGG - chr7_3:40533629-40533648 Msa1104000:intron 30.0%
! GCTTTTCCTTACATTTTCTT+AGG - chr7_3:40533651-40533670 Msa1104000:intron 30.0%
!!! GTTTTAATTTCAGCGTCATT+TGG - chr7_3:40533774-40533793 Msa1104000:intron 30.0%
! AAAGTTGAGGAGTTTTCTTT+AGG + chr7_3:40533974-40533993 None:intergenic 30.0%
! AAAGAAAACTCCTCAACTTT+TGG - chr7_3:40533974-40533993 Msa1104000:intron 30.0%
!!! CATCTCAACAAGATTTTTTC+TGG + chr7_3:40534133-40534152 None:intergenic 30.0%
CAGAAAAAATCTTGTTGAGA+TGG - chr7_3:40534131-40534150 Msa1104000:intron 30.0%
GTTTAATTATCTTGAAACGG+AGG + chr7_3:40534295-40534314 None:intergenic 30.0%
ATATATTCTTGTGGCATTGT+AGG - chr7_3:40534445-40534464 Msa1104000:intron 30.0%
!!! ACTAGTTTTGCTCTTTCAAA+CGG + chr7_3:40534548-40534567 None:intergenic 30.0%
TCTTGAACATGCTGAAAAAA+TGG - chr7_3:40534568-40534587 Msa1104000:intron 30.0%
CTTGAACATGCTGAAAAAAT+GGG - chr7_3:40534569-40534588 Msa1104000:intron 30.0%
ACAAAAGCAAGGTTAAGATT+TGG + chr7_3:40534638-40534657 None:intergenic 30.0%
!! TTGCGCATATTTTTCAAATC+AGG - chr7_3:40534657-40534676 Msa1104000:intron 30.0%
GATAATGATAATCTTCTCCT+CGG - chr7_3:40534681-40534700 Msa1104000:intron 30.0%
CAATTTCTTTGTAACAGGAA+TGG - chr7_3:40534745-40534764 Msa1104000:intron 30.0%
ATCGGAAACATTGTCATAAT+TGG - chr7_3:40535167-40535186 Msa1104000:intron 30.0%
TGTAACCAAGTTGTGAAAAT+TGG - chr7_3:40535447-40535466 Msa1104000:intron 30.0%
GTAACCAAGTTGTGAAAATT+GGG - chr7_3:40535448-40535467 Msa1104000:intron 30.0%
! GAAACAACTTAAGTTTTCCT+TGG - chr7_3:40535470-40535489 Msa1104000:CDS 30.0%
! TTTTCCTTGGTAAATATTGC+TGG - chr7_3:40535483-40535502 Msa1104000:CDS 30.0%
ATTTCCAGCAATATTTACCA+AGG + chr7_3:40535490-40535509 None:intergenic 30.0%
! TCAAGTTCTTTAGAAGTTGT+AGG + chr7_3:40535859-40535878 None:intergenic 30.0%
TGATTCTGATATTCTGCAAT+GGG - chr7_3:40535907-40535926 Msa1104000:intron 30.0%
CCTTTACATCAAGTTCTTAA+AGG + chr7_3:40536009-40536028 None:intergenic 30.0%
! CCTTTAAGAACTTGATGTAA+AGG - chr7_3:40536006-40536025 Msa1104000:intron 30.0%
TTACTTCATCAGCAAGATTA+AGG + chr7_3:40536151-40536170 None:intergenic 30.0%
CAGGATAAAAGTTTATCAGA+TGG - chr7_3:40536541-40536560 Msa1104000:intron 30.0%
AAAGAATCAAAAGTTGTGGA+GGG + chr7_3:40536748-40536767 None:intergenic 30.0%
TATCACAACCAAAATAAGAC+AGG + chr7_3:40537122-40537141 None:intergenic 30.0%
!!! CTTATTTTGGTTGTGATACA+TGG - chr7_3:40537124-40537143 Msa1104000:intron 30.0%
GGTGATGACTAATTTCTAAA+AGG - chr7_3:40537276-40537295 Msa1104000:intron 30.0%
AATCATGAAATTCTCTCAAC+TGG - chr7_3:40537432-40537451 Msa1104000:CDS 30.0%
! TGGTTTAAATTTTGCAGATC+AGG - chr7_3:40537576-40537595 Msa1104000:intron 30.0%
ATCAGTATTGCAAGAAAACT+TGG - chr7_3:40537625-40537644 Msa1104000:intron 30.0%
! GTAAACATTTTCATACCTAG+TGG - chr7_3:40537711-40537730 Msa1104000:intron 30.0%
TGTTTAGCATAAAAACCACT+AGG + chr7_3:40537729-40537748 None:intergenic 30.0%
GCTAAACATTTGAATGATGT+AGG - chr7_3:40537741-40537760 Msa1104000:intron 30.0%
!! TTATACTTGCTGTTAGTGTA+AGG + chr7_3:40537783-40537802 None:intergenic 30.0%
! GAAAAATGATTTGGCTATTC+CGG - chr7_3:40538224-40538243 Msa1104000:intron 30.0%
ATGTGAAAAAGATAAGGTCA+AGG - chr7_3:40538266-40538285 Msa1104000:intron 30.0%
CGAAGAGATTGATAAACTAA+TGG - chr7_3:40538696-40538715 Msa1104000:intron 30.0%
!! GATATTCTAAAGTCTTCAAC+TGG - chr7_3:40538850-40538869 Msa1104000:CDS 30.0%
! TTGTGGTGTTAAATCAGTTA+TGG - chr7_3:40538932-40538951 Msa1104000:intron 30.0%
! TGTGGTGTTAAATCAGTTAT+GGG - chr7_3:40538933-40538952 Msa1104000:intron 30.0%
TCACCATTGCAAAATTATAG+GGG - chr7_3:40538985-40539004 Msa1104000:intron 30.0%
! TATCCCCTATAATTTTGCAA+TGG + chr7_3:40538834-40538853 None:intergenic 30.0%
!! GATATTCTAAAGTCTTCAAC+TGG - chr7_3:40538850-40538869 Msa1104000:CDS 30.0%
!!! GTTTGTAATCGTTTTTTGAG+AGG - chr7_3:40539307-40539326 Msa1104000:intron 30.0%
!!! CACATCTTTTTTAGACTCTA+AGG - chr7_3:40539340-40539359 Msa1104000:intron 30.0%
AGGTTATGCCCTAAATAAAA+TGG + chr7_3:40539414-40539433 None:intergenic 30.0%
TTACCCATAAAAATTTGGGT+CGG + chr7_3:40539595-40539614 None:intergenic 30.0%
CCACTTTACCCATAAAAATT+TGG + chr7_3:40539600-40539619 None:intergenic 30.0%
! CCAAATTTTTATGGGTAAAG+TGG - chr7_3:40539597-40539616 Msa1104000:intron 30.0%
! AATTTTTATGGGTAAAGTGG+AGG - chr7_3:40539600-40539619 Msa1104000:intron 30.0%
! ATTTTTATGGGTAAAGTGGA+GGG - chr7_3:40539601-40539620 Msa1104000:intron 30.0%
TTAAATTTACCGCTTCTCAA+TGG - chr7_3:40539796-40539815 Msa1104000:intron 30.0%
TAAATTTACCGCTTCTCAAT+GGG - chr7_3:40539797-40539816 Msa1104000:intron 30.0%
!! TCATGCATCTTTTAGTTATG+TGG + chr7_3:40539969-40539988 None:intergenic 30.0%
!! GTGATTTGCTTTCATATGAT+TGG + chr7_3:40540081-40540100 None:intergenic 30.0%
ATCACACATAATTGCCAATT+GGG - chr7_3:40540124-40540143 Msa1104000:intron 30.0%
AGTAAAAATATACGCCCAAT+TGG + chr7_3:40540141-40540160 None:intergenic 30.0%
TATTTACCTAATTGGATGTC+TGG + chr7_3:40540206-40540225 None:intergenic 30.0%
GACATCCAATTAGGTAAATA+TGG - chr7_3:40540206-40540225 Msa1104000:CDS 30.0%
GGAATGATGACTTATGTTAA+GGG + chr7_3:40540247-40540266 None:intergenic 30.0%
AGGAATGATGACTTATGTTA+AGG + chr7_3:40540248-40540267 None:intergenic 30.0%
!! CAAATCATAAGCTCTAGAAT+AGG - chr7_3:40540285-40540304 Msa1104000:CDS 30.0%
GAGAGAATTTGAAGAAACAT+AGG + chr7_3:40540499-40540518 None:intergenic 30.0%
! AATTTTTATGGGTAAAGTGG+AGG - chr7_3:40539600-40539619 Msa1104000:intron 30.0%
! ATTTTTATGGGTAAAGTGGA+GGG - chr7_3:40539601-40539620 Msa1104000:intron 30.0%
TAATGTTATTAATTCGCCCA+GGG + chr7_3:40540687-40540706 None:intergenic 30.0%
ATAATGTTATTAATTCGCCC+AGG + chr7_3:40540688-40540707 None:intergenic 30.0%
!!! ATTTTGGTGCCCTATAAAAA+TGG - chr7_3:40540889-40540908 Msa1104000:intron 30.0%
GTGATATGACATGATAATCA+GGG + chr7_3:40541061-40541080 None:intergenic 30.0%
TGTGATATGACATGATAATC+AGG + chr7_3:40541062-40541081 None:intergenic 30.0%
TGAAATTTACCACTTCTCAA+AGG - chr7_3:40541092-40541111 Msa1104000:CDS 30.0%
GAAATTTACCACTTCTCAAA+GGG - chr7_3:40541093-40541112 Msa1104000:CDS 30.0%
!!! GAAGGACATCATATTTTAGT+AGG + chr7_3:40541132-40541151 None:intergenic 30.0%
CTAAAATATGATGTCCTTCA+TGG - chr7_3:40541133-40541152 Msa1104000:CDS 30.0%
TCATAATATTGCTTCCATGA+AGG + chr7_3:40541150-40541169 None:intergenic 30.0%
!! AAGCTTTCAAGTTTATGAGT+TGG + chr7_3:40541271-40541290 None:intergenic 30.0%
! TTATTGTTAAACGGACTCAT+TGG - chr7_3:40541336-40541355 Msa1104000:intron 30.0%
! TGGTTTATGAACTTTTGTAG+CGG - chr7_3:40541356-40541375 Msa1104000:intron 30.0%
ATTTATGAAGGAGATCAATG+TGG - chr7_3:40541532-40541551 Msa1104000:intron 30.0%
TAAATTGCACAGCAATTATC+AGG + chr7_3:40541576-40541595 None:intergenic 30.0%
GATAATTGCTGTGCAATTTA+TGG - chr7_3:40541576-40541595 Msa1104000:intron 30.0%
!!! TAACAATTTTTTGTGCATGC+AGG - chr7_3:40541975-40541994 Msa1104000:five_prime_UTR 30.0%
!! ATTCAAAAGGTGAAAGTGTC+TGG + chr7_3:40531427-40531446 None:intergenic 35.0%
CTAGTTATGTCAAGTCATTG+GGG - chr7_3:40531560-40531579 Msa1104000:intron 35.0%
GAAGTTCAACTTGTGTAAAC+TGG + chr7_3:40531616-40531635 None:intergenic 35.0%
! GTTGATTCTCCTAGAAAGAT+TGG - chr7_3:40532030-40532049 Msa1104000:intron 35.0%
GATTGTAGTTCATGATCATG+AGG - chr7_3:40532113-40532132 Msa1104000:intron 35.0%
ATTTGAAGACAAGTCTCCAA+TGG + chr7_3:40532158-40532177 None:intergenic 35.0%
CATTCTAGATCAACCAAAGA+TGG + chr7_3:40532522-40532541 None:intergenic 35.0%
GCACTTACACTTCAAATTGA+TGG + chr7_3:40532659-40532678 None:intergenic 35.0%
AAATTCTTCAGCATTCCTCA+AGG - chr7_3:40533002-40533021 Msa1104000:intron 35.0%
!! CTCTTTGAAATCGCAAAAGA+CGG - chr7_3:40533156-40533175 Msa1104000:intron 35.0%
CTCAAGACTTAATTGAAGGA+AGG - chr7_3:40533437-40533456 Msa1104000:intron 35.0%
!!! CTCAACAAGATTTTTTCTGG+CGG + chr7_3:40534130-40534149 None:intergenic 35.0%
AAATTTCTCCTCCGATGTTA+AGG - chr7_3:40534198-40534217 Msa1104000:intron 35.0%
!! TGTCGATGGATTAGTGTATT+CGG + chr7_3:40534510-40534529 None:intergenic 35.0%
ATACACTAATCCATCGACAT+TGG - chr7_3:40534511-40534530 Msa1104000:intron 35.0%
CTTAACTGCAAGAGATATAG+TGG - chr7_3:40534604-40534623 Msa1104000:intron 35.0%
AAATATGCGCAACAAAAGCA+AGG + chr7_3:40534649-40534668 None:intergenic 35.0%
TATCATCTAGCAATGAGTCA+AGG + chr7_3:40534801-40534820 None:intergenic 35.0%
! AAGAGAGAGTTTTTCGTCTT+TGG - chr7_3:40534836-40534855 Msa1104000:intron 35.0%
CGTCTTTGGATTAATAGTCT+CGG - chr7_3:40534850-40534869 Msa1104000:intron 35.0%
GCTCATATTCGCTTATAAGT+GGG - chr7_3:40535022-40535041 Msa1104000:intron 35.0%
! TATAGCAGCTACTTTGCTAT+CGG - chr7_3:40535149-40535168 Msa1104000:intron 35.0%
CAATGATCGATCACAATGTT+TGG + chr7_3:40535193-40535212 None:intergenic 35.0%
CAAACATTGTGATCGATCAT+TGG - chr7_3:40535191-40535210 Msa1104000:intron 35.0%
!! ACTTTTAGAGACTCTTGACA+AGG - chr7_3:40535350-40535369 Msa1104000:intron 35.0%
TATCACCTGGGATTGTTAAT+TGG - chr7_3:40535373-40535392 Msa1104000:intron 35.0%
ATCTTCCAATTAACAATCCC+AGG + chr7_3:40535381-40535400 None:intergenic 35.0%
TTAAATGGCATCTTTATGGG+AGG + chr7_3:40535414-40535433 None:intergenic 35.0%
! GTTTCCCAATTTTCACAACT+TGG + chr7_3:40535455-40535474 None:intergenic 35.0%
AACTTGAGATTTCACTCTCA+TGG - chr7_3:40535872-40535891 Msa1104000:intron 35.0%
ACTTGAGATTTCACTCTCAT+GGG - chr7_3:40535873-40535892 Msa1104000:intron 35.0%
CTGATTCTGATATTCTGCAA+TGG - chr7_3:40535906-40535925 Msa1104000:intron 35.0%
GATGAATAAGATTAAGGGCA+AGG + chr7_3:40536053-40536072 None:intergenic 35.0%
!! AACTTCGGTGTTAAACTCAT+AGG - chr7_3:40536216-40536235 Msa1104000:intron 35.0%
TCATGACGATGATTGAATGA+CGG - chr7_3:40536388-40536407 Msa1104000:intron 35.0%
!! GAATAAAAGTGCTGTGTGTA+TGG + chr7_3:40536460-40536479 None:intergenic 35.0%
! CATGATTTGCAGACTGAAAA+TGG - chr7_3:40536718-40536737 Msa1104000:intron 35.0%
CAAAGAATCAAAAGTTGTGG+AGG + chr7_3:40536749-40536768 None:intergenic 35.0%
ACAGTTAGAATCTGAAGGAA+AGG + chr7_3:40537014-40537033 None:intergenic 35.0%
!!! TACAAAGTATCCACCGATTT+TGG - chr7_3:40537255-40537274 Msa1104000:intron 35.0%
!! TCTTGTTCCTTCTAAAGCTT+TGG - chr7_3:40537378-40537397 Msa1104000:intron 35.0%
!! ACTTCAACCAAAGCTTTAGA+AGG + chr7_3:40537388-40537407 None:intergenic 35.0%
ATCACTGAGGTAGTTCAAAT+TGG - chr7_3:40537676-40537695 Msa1104000:intron 35.0%
TTCTTTCTTCAACAACAGCA+GGG + chr7_3:40537825-40537844 None:intergenic 35.0%
GGTGTAAATGGAGAAGAAAA+AGG + chr7_3:40538012-40538031 None:intergenic 35.0%
GTTTGATCCGTCATTAAATC+CGG + chr7_3:40538246-40538265 None:intergenic 35.0%
GAAAAAGATAAGGTCAAGGT+AGG - chr7_3:40538270-40538289 Msa1104000:intron 35.0%
GTAGGAAGTTAGATCTAAAG+CGG - chr7_3:40538288-40538307 Msa1104000:intron 35.0%
TTTACCAACAATGCACATGA+CGG - chr7_3:40538569-40538588 Msa1104000:CDS 35.0%
!!! GTGTTTTAGTGCACAAAAGA+GGG + chr7_3:40538601-40538620 None:intergenic 35.0%
!!! TGTGTTTTAGTGCACAAAAG+AGG + chr7_3:40538602-40538621 None:intergenic 35.0%
TGCACTAAAACACAATGCAT+AGG - chr7_3:40538608-40538627 Msa1104000:intron 35.0%
TAAAACACAATGCATAGGTC+AGG - chr7_3:40538613-40538632 Msa1104000:intron 35.0%
TCCAGCGTTAAATCAAATTG+TGG - chr7_3:40538915-40538934 Msa1104000:intron 35.0%
! ACCACAATTTGATTTAACGC+TGG + chr7_3:40538919-40538938 None:intergenic 35.0%
! CTCTAAGGGATGATAATAGT+TGG - chr7_3:40539355-40539374 Msa1104000:intron 35.0%
TAGTTGGAAGATCATACTAG+TGG - chr7_3:40539371-40539390 Msa1104000:CDS 35.0%
! TACTAGTGGCCTTAATAGAT+TGG - chr7_3:40539385-40539404 Msa1104000:CDS 35.0%
! TGCAAACTTGTTCTCTTCTT+AGG - chr7_3:40539450-40539469 Msa1104000:intron 35.0%
TTAACGACATACGTCTACTA+TGG - chr7_3:40539565-40539584 Msa1104000:CDS 35.0%
! TACTCCGACCCAAATTTTTA+TGG - chr7_3:40539588-40539607 Msa1104000:intron 35.0%
! ACTCCGACCCAAATTTTTAT+GGG - chr7_3:40539589-40539608 Msa1104000:intron 35.0%
ATCATGAATTGCTTTCTGGA+AGG + chr7_3:40539854-40539873 None:intergenic 35.0%
GGAAATCATGAATTGCTTTC+TGG + chr7_3:40539858-40539877 None:intergenic 35.0%
TGTTCTGTGATTTATGGTGA+AGG + chr7_3:40539879-40539898 None:intergenic 35.0%
GATCACACATAATTGCCAAT+TGG - chr7_3:40540123-40540142 Msa1104000:intron 35.0%
! TTGTTGAGTTGTACGTTGTA+AGG + chr7_3:40540268-40540287 None:intergenic 35.0%
GAATAGGGCGATTACAAATT+TGG - chr7_3:40540301-40540320 Msa1104000:CDS 35.0%
!! CCCAAGACTCCATTTTTATA+GGG + chr7_3:40540901-40540920 None:intergenic 35.0%
CCCTATAAAAATGGAGTCTT+GGG - chr7_3:40540898-40540917 Msa1104000:intron 35.0%
!! TCCCAAGACTCCATTTTTAT+AGG + chr7_3:40540902-40540921 None:intergenic 35.0%
TTTAACATGCATGCTATGCA+GGG + chr7_3:40540956-40540975 None:intergenic 35.0%
ATTTAACATGCATGCTATGC+AGG + chr7_3:40540957-40540976 None:intergenic 35.0%
AGGATTGTGATTACCGTTAT+GGG + chr7_3:40541202-40541221 None:intergenic 35.0%
AAGGATTGTGATTACCGTTA+TGG + chr7_3:40541203-40541222 None:intergenic 35.0%
AAGATGGTGAAGAAACTCAT+AGG - chr7_3:40541494-40541513 Msa1104000:intron 35.0%
TACTACATTACACATAGGGA+TGG + chr7_3:40541649-40541668 None:intergenic 35.0%
TTGTGACATAAAGTCATCCA+TGG - chr7_3:40541809-40541828 Msa1104000:exon 35.0%
! TGGAACAAGGACACCATTTT+GGG + chr7_3:40531383-40531402 None:intergenic 40.0%
! ATGGAACAAGGACACCATTT+TGG + chr7_3:40531384-40531403 None:intergenic 40.0%
TTAGAGAAGGAGATGGAACA+AGG + chr7_3:40531396-40531415 None:intergenic 40.0%
!! AAGAGTGTTAGAGAAGGAGA+TGG + chr7_3:40531403-40531422 None:intergenic 40.0%
!! TCTGGAAAGAGTGTTAGAGA+AGG + chr7_3:40531409-40531428 None:intergenic 40.0%
!!! GTAAACTGGTTTTGAAGCCA+TGG + chr7_3:40531602-40531621 None:intergenic 40.0%
!! AGAATGATGAAGCACTGACT+CGG - chr7_3:40532536-40532555 Msa1104000:intron 40.0%
TTGAAGTGTAAGTGCTTCGT+AGG - chr7_3:40532664-40532683 Msa1104000:intron 40.0%
GGTTGCTATATAATGATGCC+AGG - chr7_3:40532924-40532943 Msa1104000:intron 40.0%
! CTTGCAGTTTCAAGTAAACC+TGG + chr7_3:40532945-40532964 None:intergenic 40.0%
!!! GCTTTTGCAAGTTCTAGAAC+AGG - chr7_3:40532964-40532983 Msa1104000:intron 40.0%
TGTGTGAAGCAATGTTGTAG+TGG + chr7_3:40533031-40533050 None:intergenic 40.0%
CACAATAAGTGAATCCGAGA+AGG - chr7_3:40533047-40533066 Msa1104000:intron 40.0%
TGTAACATATGACGCCTTCT+CGG + chr7_3:40533064-40533083 None:intergenic 40.0%
!! CAAGAGGAAGGTATTTCTTG+AGG + chr7_3:40533119-40533138 None:intergenic 40.0%
! CAAAGAGATCGTTGGTTGAA+GGG + chr7_3:40533143-40533162 None:intergenic 40.0%
! TCAAAGAGATCGTTGGTTGA+AGG + chr7_3:40533144-40533163 None:intergenic 40.0%
TGCGATTTCAAAGAGATCGT+TGG + chr7_3:40533151-40533170 None:intergenic 40.0%
CAAAAGACGGTGTTCTTCTT+TGG - chr7_3:40533169-40533188 Msa1104000:intron 40.0%
CAATTGCTTTAGCAGAGTTG+AGG + chr7_3:40533393-40533412 None:intergenic 40.0%
CTCAACTCTGCTAAAGCAAT+TGG - chr7_3:40533391-40533410 Msa1104000:intron 40.0%
! TTGAGTGCCAATGTTGACTA+CGG + chr7_3:40533422-40533441 None:intergenic 40.0%
GGCACTCAAGACTTAATTGA+AGG - chr7_3:40533433-40533452 Msa1104000:intron 40.0%
AAGTCACAACATGTGTGTTG+AGG + chr7_3:40533622-40533641 None:intergenic 40.0%
TTTCAGCGTCATTTGGTACT+AGG - chr7_3:40533781-40533800 Msa1104000:intron 40.0%
ATGCACAGCTACCTTAACAT+CGG + chr7_3:40534212-40534231 None:intergenic 40.0%
CGGATGCAAGAACATTTAGA+AGG + chr7_3:40534490-40534509 None:intergenic 40.0%
! TTTTTCACAGCCAATGTCGA+TGG + chr7_3:40534524-40534543 None:intergenic 40.0%
! ACTGCAAGAGATATAGTGGA+AGG - chr7_3:40534608-40534627 Msa1104000:intron 40.0%
ACAATGTGTTTGAGGATGTC+CGG - chr7_3:40534890-40534909 Msa1104000:intron 40.0%
TTTCGATATTTCACCCGTTC+CGG + chr7_3:40534912-40534931 None:intergenic 40.0%
CGATTGAAAATTGCTGAGTG+TGG - chr7_3:40535000-40535019 Msa1104000:intron 40.0%
GGCTCATATTCGCTTATAAG+TGG - chr7_3:40535021-40535040 Msa1104000:intron 40.0%
TCTCACATTAAACACGTGTC+TGG - chr7_3:40535646-40535665 Msa1104000:intron 40.0%
ACAATTGATCGTAACCCTGT+CGG + chr7_3:40535693-40535712 None:intergenic 40.0%
AACACCAAAGTGAAAAGCTC+AGG - chr7_3:40535932-40535951 Msa1104000:intron 40.0%
TACAACCTAGAGCTGTGAAT+TGG - chr7_3:40536593-40536612 Msa1104000:intron 40.0%
ACAACCTAGAGCTGTGAATT+GGG - chr7_3:40536594-40536613 Msa1104000:intron 40.0%
! AATTGGGGTCTTGTGACAAA+CGG - chr7_3:40536610-40536629 Msa1104000:intron 40.0%
TTAGTCATCACCAAAATCGG+TGG + chr7_3:40537268-40537287 None:intergenic 40.0%
GTTCTTTCTTCAACAACAGC+AGG + chr7_3:40537826-40537845 None:intergenic 40.0%
TTCAGATTGTGAGAGTCAAG+TGG - chr7_3:40537849-40537868 Msa1104000:CDS 40.0%
GGCTATTCCGGATTTAATGA+CGG - chr7_3:40538236-40538255 Msa1104000:intron 40.0%
! CTCTTGTCATGGGTTATTGA+AGG - chr7_3:40539114-40539133 Msa1104000:intron 40.0%
! AATTTTACACACTCTTCGGG+AGG - chr7_3:40539175-40539194 Msa1104000:CDS 40.0%
!!! AGGGCATAACCTTTTAGTTC+TGG - chr7_3:40539422-40539441 Msa1104000:intron 40.0%
TGCAATGAGCCAGAACTAAA+AGG + chr7_3:40539434-40539453 None:intergenic 40.0%
ACTTGTTCTCTTCTTAGGTC+TGG - chr7_3:40539455-40539474 Msa1104000:intron 40.0%
CAGCATGCATGCAAGTTAAA+TGG - chr7_3:40539657-40539676 Msa1104000:intron 40.0%
AGTTATGTGGTCAGTGTGAT+GGG + chr7_3:40539956-40539975 None:intergenic 40.0%
TAGTTATGTGGTCAGTGTGA+TGG + chr7_3:40539957-40539976 None:intergenic 40.0%
CACAAACCAGACATCCAATT+AGG - chr7_3:40540197-40540216 Msa1104000:CDS 40.0%
GCCCTATAAAAATGGAGTCT+TGG - chr7_3:40540897-40540916 Msa1104000:intron 40.0%
TTAACATGCATGCTATGCAG+GGG + chr7_3:40540955-40540974 None:intergenic 40.0%
! AATCTCAAGGTATCTTGTGC+AGG + chr7_3:40541415-40541434 None:intergenic 40.0%
GTGAAGAAACTCATAGGCAT+GGG - chr7_3:40541500-40541519 Msa1104000:intron 40.0%
! GGGTTGGCATCAATTTATGA+AGG - chr7_3:40541520-40541539 Msa1104000:intron 40.0%
AAGGAGATCAATGTGGAAGT+GGG - chr7_3:40541539-40541558 Msa1104000:intron 40.0%
GACATGTTCATACCATCTGT+TGG - chr7_3:40541747-40541766 Msa1104000:CDS 40.0%
TAAACAGACATGCCAACAGA+TGG + chr7_3:40541762-40541781 None:intergenic 40.0%
GTTGGCATGTCTGTTTACTT+TGG - chr7_3:40541765-40541784 Msa1104000:CDS 40.0%
TGGTCCTAAACATGTGACAA+AGG - chr7_3:40541785-40541804 Msa1104000:CDS 40.0%
GGTCCTAAACATGTGACAAA+GGG - chr7_3:40541786-40541805 Msa1104000:CDS 40.0%
CAACCCTTTGTCACATGTTT+AGG + chr7_3:40541792-40541811 None:intergenic 40.0%
AAGTGAGAGTGACATTGAGT+GGG + chr7_3:40541842-40541861 None:intergenic 40.0%
TGTCACTCTCACTTGAAACA+TGG - chr7_3:40541848-40541867 Msa1104000:five_prime_UTR 40.0%
TGAACTATGACAGCTCTTCC+CGG - chr7_3:40531356-40531375 Msa1104000:CDS 45.0%
ATGATCATGAGGAGAGAGAG+TGG - chr7_3:40532124-40532143 Msa1104000:intron 45.0%
GAGAGTGGAAAGCTTACCAT+TGG - chr7_3:40532139-40532158 Msa1104000:intron 45.0%
TTGGGTGTAACTACATGTGC+CGG - chr7_3:40532616-40532635 Msa1104000:intron 45.0%
ATGTTGTAGTGGCAACCTTG+AGG + chr7_3:40533020-40533039 None:intergenic 45.0%
GGATGTACCGTAGTCAACAT+TGG - chr7_3:40533412-40533431 Msa1104000:intron 45.0%
!!! AACTCCTCAACTTTTGGAGC+TGG - chr7_3:40533980-40533999 Msa1104000:intron 45.0%
!!! AACTTTTGGAGCTGGTTGGT+TGG - chr7_3:40533988-40534007 Msa1104000:intron 45.0%
!!! ACTTTTGGAGCTGGTTGGTT+GGG - chr7_3:40533989-40534008 Msa1104000:intron 45.0%
! ACTCTTGACAAGGTATCACC+TGG - chr7_3:40535360-40535379 Msa1104000:intron 45.0%
! CTCTTGACAAGGTATCACCT+GGG - chr7_3:40535361-40535380 Msa1104000:intron 45.0%
TGCTGGAAATGACATTGTGC+AGG - chr7_3:40535500-40535519 Msa1104000:CDS 45.0%
GCTGGAAATGACATTGTGCA+GGG - chr7_3:40535501-40535520 Msa1104000:CDS 45.0%
ATCTGTGTCAGCGTTTCGTA+AGG - chr7_3:40535749-40535768 Msa1104000:CDS 45.0%
! GCGTTTCGTAAGGTGTTAGA+TGG - chr7_3:40535759-40535778 Msa1104000:CDS 45.0%
! GCTTCCTGAGCTTTTCACTT+TGG + chr7_3:40535939-40535958 None:intergenic 45.0%
CTCTAGGTTGTACAGAACTC+AGG + chr7_3:40536585-40536604 None:intergenic 45.0%
CAACCTAGAGCTGTGAATTG+GGG - chr7_3:40536595-40536614 Msa1104000:intron 45.0%
CTTGTGACAAACGGAGTAAC+TGG - chr7_3:40536619-40536638 Msa1104000:intron 45.0%
TTGTTTAAGTGGGGAGACAC+TGG + chr7_3:40537326-40537345 None:intergenic 45.0%
ACTACCTCAGTGATGTCTTC+AGG + chr7_3:40537670-40537689 None:intergenic 45.0%
TTGAAAAATCCGCCGTCTGT+GGG - chr7_3:40538080-40538099 Msa1104000:intron 45.0%
TAAGCCGTCATGTGCATTGT+TGG + chr7_3:40538576-40538595 None:intergenic 45.0%
TCAAGCTCTCACTCTTGTCA+TGG - chr7_3:40539103-40539122 Msa1104000:intron 45.0%
CAAGCTCTCACTCTTGTCAT+GGG - chr7_3:40539104-40539123 Msa1104000:intron 45.0%
AGACACTTGTCGACCACAAT+TGG - chr7_3:40539527-40539546 Msa1104000:intron 45.0%
TGTGTCAAGACACGCATTCA+GGG + chr7_3:40539766-40539785 None:intergenic 45.0%
ATGTGTCAAGACACGCATTC+AGG + chr7_3:40539767-40539786 None:intergenic 45.0%
TCAAGACAATCCACACCACA+TGG - chr7_3:40539930-40539949 Msa1104000:CDS 45.0%
ACCACTTCTCAAAGGGTCAT+CGG - chr7_3:40541100-40541119 Msa1104000:CDS 45.0%
GGTGAAGAAACTCATAGGCA+TGG - chr7_3:40541499-40541518 Msa1104000:intron 45.0%
AGAAACTCATAGGCATGGGT+TGG - chr7_3:40541504-40541523 Msa1104000:intron 45.0%
GAAGGAGATCAATGTGGAAG+TGG - chr7_3:40541538-40541557 Msa1104000:intron 45.0%
TCAATGTGGAAGTGGGTGAT+AGG - chr7_3:40541546-40541565 Msa1104000:intron 45.0%
!! ATTGAGTGGGTTGATAGCCA+TGG + chr7_3:40541829-40541848 None:intergenic 45.0%
CAAGTGAGAGTGACATTGAG+TGG + chr7_3:40541843-40541862 None:intergenic 45.0%
AGTGACTGACTAGAGTGTAG+AGG + chr7_3:40541878-40541897 None:intergenic 45.0%
!!! AATTATTGATTTTTTTTTAA+GGG + chr7_3:40537214-40537233 None:intergenic 5.0%
!!! AAATTATTGATTTTTTTTTA+AGG + chr7_3:40537215-40537234 None:intergenic 5.0%
!!! TTTTATCAAAAAATAAATTT+TGG - chr7_3:40538758-40538777 Msa1104000:CDS 5.0%
!!! ATAATAGATAATAATTTTTA+TGG - chr7_3:40540589-40540608 Msa1104000:intron 5.0%
!!! TAATAGATAATAATTTTTAT+GGG - chr7_3:40540590-40540609 Msa1104000:intron 5.0%
!!! AAGGACACCATTTTGGGACC+GGG + chr7_3:40531377-40531396 None:intergenic 50.0%
!!! CAAGGACACCATTTTGGGAC+CGG + chr7_3:40531378-40531397 None:intergenic 50.0%
TGGTTGAAGGGTCAAGAGGA+AGG + chr7_3:40533131-40533150 None:intergenic 50.0%
! TCGTTGGTTGAAGGGTCAAG+AGG + chr7_3:40533135-40533154 None:intergenic 50.0%
GCGCGTTCATCGATAGTTGT+CGG + chr7_3:40533313-40533332 None:intergenic 50.0%
CCAACCAGCTCCAAAAGTTG+AGG + chr7_3:40533987-40534006 None:intergenic 50.0%
!!! CCTCAACTTTTGGAGCTGGT+TGG - chr7_3:40533984-40534003 Msa1104000:intron 50.0%
! GCTGGTTGGTTGGGATAGTA+AGG - chr7_3:40533998-40534017 Msa1104000:intron 50.0%
CACAGCTACCTTAACATCGG+AGG + chr7_3:40534209-40534228 None:intergenic 50.0%
! GTCAACAAAAGCATGTGCCG+AGG + chr7_3:40534701-40534720 None:intergenic 50.0%
GTGTTTGAGGATGTCCGGAA+CGG - chr7_3:40534895-40534914 Msa1104000:intron 50.0%
TGTTTGAGGATGTCCGGAAC+GGG - chr7_3:40534896-40534915 Msa1104000:intron 50.0%
AGACCCCAATTCACAGCTCT+AGG + chr7_3:40536601-40536620 None:intergenic 50.0%
GCTTCCTGAAGACATCACTG+AGG - chr7_3:40537663-40537682 Msa1104000:intron 50.0%
GTTGAAAAATCCGCCGTCTG+TGG - chr7_3:40538079-40538098 Msa1104000:intron 50.0%
! GCTTTTAACCACGTGGTCGT+GGG + chr7_3:40538113-40538132 None:intergenic 50.0%
CTCTACCAGCTGAGCTAAGA+CGG - chr7_3:40538139-40538158 Msa1104000:intron 50.0%
CTTCAACTGGTCATGTCGAG+AGG - chr7_3:40539020-40539039 Msa1104000:intron 50.0%
TCTTCGGGAGGCAAATCAAG+TGG - chr7_3:40539187-40539206 Msa1104000:CDS 50.0%
CCTAGAGCATGAGCCAATTG+TGG + chr7_3:40539543-40539562 None:intergenic 50.0%
! CCACAATTGGCTCATGCTCT+AGG - chr7_3:40539540-40539559 Msa1104000:intron 50.0%
ACCGCTTCTCAATGGGTCAT+AGG - chr7_3:40539804-40539823 Msa1104000:intron 50.0%
CCCTATGACCCATTGAGAAG+CGG + chr7_3:40539808-40539827 None:intergenic 50.0%
CCGCTTCTCAATGGGTCATA+GGG - chr7_3:40539805-40539824 Msa1104000:intron 50.0%
CGCTTCTCAATGGGTCATAG+GGG - chr7_3:40539806-40539825 Msa1104000:intron 50.0%
CTATGCAGGGGTGACTCTAA+GGG + chr7_3:40540943-40540962 None:intergenic 50.0%
CCACTTCTCAAAGGGTCATC+GGG - chr7_3:40541101-40541120 Msa1104000:CDS 50.0%
! TGTGGTGTGGATTGTCGTGA+AGG + chr7_3:40541176-40541195 None:intergenic 50.0%
TCACGACAATCCACACCACA+TGG - chr7_3:40541176-40541195 Msa1104000:CDS 50.0%
GATTACCGTTATGGGCCATG+TGG + chr7_3:40541194-40541213 None:intergenic 50.0%
TCACGCATGCTTGACTCACT+GGG + chr7_3:40542027-40542046 None:intergenic 50.0%
AGCTCTTCCCGGTCCCAAAA+TGG - chr7_3:40531367-40531386 Msa1104000:intron 55.0%
! ACATGTGCCGGTGTAGACAC+TGG - chr7_3:40532628-40532647 Msa1104000:intron 55.0%
GGTGTGTCCAGTGTCTACAC+CGG + chr7_3:40532638-40532657 None:intergenic 55.0%
ACATTGTGCCAGACACCGAC+AGG - chr7_3:40535675-40535694 Msa1104000:intron 55.0%
CATTGTGCCAGACACCGACA+GGG - chr7_3:40535676-40535695 Msa1104000:intron 55.0%
! ATCGTAACCCTGTCGGTGTC+TGG + chr7_3:40535686-40535705 None:intergenic 55.0%
GAGACACTGGCGAGCAACTA+TGG + chr7_3:40537313-40537332 None:intergenic 55.0%
GTGGGTTCGATTCCCACAGA+CGG + chr7_3:40538095-40538114 None:intergenic 55.0%
! GGCTTTTAACCACGTGGTCG+TGG + chr7_3:40538114-40538133 None:intergenic 55.0%
ACAAGCCGTCTTAGCTCAGC+TGG + chr7_3:40538147-40538166 None:intergenic 55.0%
GCTATGCAGGGGTGACTCTA+AGG + chr7_3:40540944-40540963 None:intergenic 55.0%
! CCCGATGACCCTTTGAGAAG+TGG + chr7_3:40541104-40541123 None:intergenic 55.0%
CCACACCACATGGCCCATAA+CGG - chr7_3:40541186-40541205 Msa1104000:CDS 55.0%
ATGCTTGACTCACTGGGGCT+TGG + chr7_3:40542021-40542040 None:intergenic 55.0%
CACGCATGCTTGACTCACTG+GGG + chr7_3:40542026-40542045 None:intergenic 55.0%
CTCACGCATGCTTGACTCAC+TGG + chr7_3:40542028-40542047 None:intergenic 55.0%
GGTTCGATTCCCACAGACGG+CGG + chr7_3:40538092-40538111 None:intergenic 60.0%
GAATCGAACCCACGACCACG+TGG - chr7_3:40538102-40538121 Msa1104000:intron 60.0%
! GCGCGTGGCTTTTAACCACG+TGG + chr7_3:40538120-40538139 None:intergenic 60.0%
!! GTGTGATGGGCCATGTGGTG+TGG + chr7_3:40539943-40539962 None:intergenic 60.0%
!! GGTCAGTGTGATGGGCCATG+TGG + chr7_3:40539948-40539967 None:intergenic 60.0%
! ACTCTAAGGGTGGGCAGGAG+GGG + chr7_3:40540930-40540949 None:intergenic 60.0%
! GACTCTAAGGGTGGGCAGGA+GGG + chr7_3:40540931-40540950 None:intergenic 60.0%
! TGACTCTAAGGGTGGGCAGG+AGG + chr7_3:40540932-40540951 None:intergenic 60.0%
! GCAGGGGTGACTCTAAGGGT+GGG + chr7_3:40540939-40540958 None:intergenic 60.0%
! TGCAGGGGTGACTCTAAGGG+TGG + chr7_3:40540940-40540959 None:intergenic 60.0%
CCGTTATGGGCCATGTGGTG+TGG + chr7_3:40541189-40541208 None:intergenic 60.0%
AGCTCAGCTGGTAGAGCGCG+TGG + chr7_3:40538135-40538154 None:intergenic 65.0%
! GGGTGACTCTAAGGGTGGGC+AGG + chr7_3:40540935-40540954 None:intergenic 65.0%
CTAAGGGTGGGCAGGAGGGG+AGG + chr7_3:40540927-40540946 None:intergenic 70.0%
Chromosome Type Strat End Strand Name
chr7_3 gene 40531322 40542059 40531322 ID=Msa1104000;Name=Msa1104000
chr7_3 mRNA 40531322 40542059 40531322 ID=Msa1104000-mRNA-1;Parent=Msa1104000;Name=Msa1104000-mRNA-1;_AED=0.08;_eAED=0.08;_QI=244|0.86|0.81|0.87|1|1|16|0|704
chr7_3 exon 40531322 40531384 40531322 ID=Msa1104000-mRNA-1:exon:8270;Parent=Msa1104000-mRNA-1
chr7_3 exon 40535094 40535157 40535094 ID=Msa1104000-mRNA-1:exon:8269;Parent=Msa1104000-mRNA-1
chr7_3 exon 40535449 40535618 40535449 ID=Msa1104000-mRNA-1:exon:8268;Parent=Msa1104000-mRNA-1
chr7_3 exon 40535697 40535788 40535697 ID=Msa1104000-mRNA-1:exon:8267;Parent=Msa1104000-mRNA-1
chr7_3 exon 40536741 40536837 40536741 ID=Msa1104000-mRNA-1:exon:8266;Parent=Msa1104000-mRNA-1
chr7_3 exon 40537399 40537556 40537399 ID=Msa1104000-mRNA-1:exon:8265;Parent=Msa1104000-mRNA-1
chr7_3 exon 40537838 40538037 40537838 ID=Msa1104000-mRNA-1:exon:8264;Parent=Msa1104000-mRNA-1
chr7_3 exon 40538464 40538619 40538464 ID=Msa1104000-mRNA-1:exon:8263;Parent=Msa1104000-mRNA-1
chr7_3 exon 40538703 40538914 40538703 ID=Msa1104000-mRNA-1:exon:8262;Parent=Msa1104000-mRNA-1
chr7_3 exon 40539162 40539278 40539162 ID=Msa1104000-mRNA-1:exon:8261;Parent=Msa1104000-mRNA-1
chr7_3 exon 40539362 40539433 40539362 ID=Msa1104000-mRNA-1:exon:8260;Parent=Msa1104000-mRNA-1
chr7_3 exon 40539556 40539594 40539556 ID=Msa1104000-mRNA-1:exon:8259;Parent=Msa1104000-mRNA-1
chr7_3 exon 40539922 40540093 40539922 ID=Msa1104000-mRNA-1:exon:8258;Parent=Msa1104000-mRNA-1
chr7_3 exon 40540191 40540435 40540191 ID=Msa1104000-mRNA-1:exon:8257;Parent=Msa1104000-mRNA-1
chr7_3 exon 40541090 40541260 40541090 ID=Msa1104000-mRNA-1:exon:8256;Parent=Msa1104000-mRNA-1
chr7_3 exon 40541729 40542059 40541729 ID=Msa1104000-mRNA-1:exon:8255;Parent=Msa1104000-mRNA-1
chr7_3 five_prime_UTR 40541816 40542059 40541816 ID=Msa1104000-mRNA-1:five_prime_utr;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40541729 40541815 40541729 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40541090 40541260 40541090 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40540191 40540435 40540191 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40539922 40540093 40539922 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40539556 40539594 40539556 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40539362 40539433 40539362 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40539162 40539278 40539162 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40538703 40538914 40538703 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40538464 40538619 40538464 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40537838 40538037 40537838 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40537399 40537556 40537399 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40536741 40536837 40536741 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40535697 40535788 40535697 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40535449 40535618 40535449 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40535094 40535157 40535094 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
chr7_3 CDS 40531322 40531384 40531322 ID=Msa1104000-mRNA-1:cds;Parent=Msa1104000-mRNA-1
Gene Sequence

>Msa1104000

ATGTCAAGTCATTGGGGTATTATAGTTTCAGATCCATGGCTTCAAAACCAGTTTACACAAGTTGAACTTCGCAGCTTAAAATCACAATTCATGATCATGAGGAGAGAGAGTGGAAAGCTTACCATTGGAGACTTGTCTTCAAATATGTCAAGATTAAAAGTTGTAGGAGAAAATCTTAGTGAAGAAGAGAGGGATTCTTATATCAATGATTTGTATCAGAAATCAGATGAAGATGTTGATTTTGAATTGTTTCTCAAGGTTTACTTGAAACTGCAAGCTTTTGCAAGTTCTAGAACAGGAAGCAATAATGCAAAAAATTCTTCAGCATTCCTCAAGGTTGCCACTACAACATTGCTTCACACAATAAGTGAATCCGAGAAGGCGTCATATGTTACACATATAAATAACTATCTTGCAGAAGATGAATTCCTCAAGAAATACCTTCCTCTTGACCCTTCAACCAACGATCTCTTTGAAATCGCAAAAGACGGTGTTCTTCTTTGTAAACTTATTAATGTGGCAGTTCCGACAACTATCGATGAACGCGCAATCAATACAAAAAGATTACTTAATCCTTGGGAAAGAAATGAAAATCACACACTTTGCCTCAACTCTGCTAAAGCAATTGGATGTACCGTAGTCAACATTGGCACTCAAGACTTAATTGAAGGAAGGCGTCATTTGGTACTAGGTCTGATTTCACAGATTATTAAGATACAATTATTGGCGAATCTGAACCTAAAGAAAACTCCTCAACTTTTGGAGCTGGTTGGTTGGGATAGTAAGGATATGGAAGAGTTGATGAGTCTACCGCCAGAAAAAATCTTGTTGAGATGGATGAATTTCCATTTGAAGAAAACAGAATATAAGAAGATTGTTGCAAATTTCTCCTCCGATGTTAAGGATGCAGAAGCTTATGCACACCTTCTAAATGTTCTTGCATCCGAATACACTAATCCATCGACATTGGCTGTGAAAAATCCGTTTGAAAGAGCAAAACTAGTTCTTGAACATGCTGAAAAAATGGGTTGCAAGAGATACTTAACTGCAAGAGATATAGTGGAAGGTTCACCAAATCTTAACCTTGCTTTTGTTGCGCATATTTTTCAAATCAGGAATGGACTTTCAACTCTAGCAAAACAAAGTTCTCTCCTTGACTCATTGCTAGATGATACTCAAGACTCAAGAGAAGAGAGAGTTTTTCGTCTTTGGATTAATAGTCTCGGAAATTCAACTTATATCAACAATGTGTTTGAGGATGTCCGGAACGGGTGGGTACTTTTAGAGACTCTTGACAAGGTATCACCTGGGATTGTTAATTGGAAGATTGCAAACAAGCCTCCCATAAAGATGCCATTTAAAAAAGTAGAGAATTGTAACCAAGTTGTGAAAATTGGGAAACAACTTAAGTTTTCCTTGGTAAATATTGCTGGAAATGACATTGTGCAGGGATATAAAAAATTAATACTAGCATATTTGTGGCAATTGATGAGATGCAATATCCTACAACTTCTAAAGAACTTGAGATTTCACTCTCATGGGAAAGAAATAACTGATTCTGATATTCTGCAATGGGCAAACACCAAAGTGAAAAGCTCAGGAAGCCAAAGCCATATATATAGTTTCAAGGATAAAAGTTTATCAGATGGAATATTTTTTCTGGAGCTCCTGAGTTCTGTACAACCTAGAGCTGTGAATTGGGGTCTTGTGACAAACGGAGTAACTGATCAGGAGAAAATGATGAATGCTACTTACATTATCAGTATTGCAAGAAAACTTGGTTGCTCAATATTCTTGCTTCCTGAAGACATCACTGAGGTAAATCAGAAGATGATCCTTACACTAACAGCAAGTATAATGTATTGGTTCTTAAAACACCCTGCTGTTGTTGAAGAAAGAACAAGTTCAGATTGTGAGAGTCAAGTGGAGACCATATCAAATTCAACACTTGATGATTCTGCTTCTGATTTTTCAGCAGAAGAGAACATGAAAAATGATTTGGCTATTCCGGATTTAATGACGGATCAAACATGTGAAAAAGATAAGGTCAAGGTTATGACTGATTCAGATGCACCAAGCCCCAGTGAGTCAAGCATGCGTGAGCTGATACACTAG

Protein sequence

>Msa1104000

MSSHWGIIVSDPWLQNQFTQVELRSLKSQFMIMRRESGKLTIGDLSSNMSRLKVVGENLSEEERDSYINDLYQKSDEDVDFELFLKVYLKLQAFASSRTGSNNAKNSSAFLKVATTTLLHTISESEKASYVTHINNYLAEDEFLKKYLPLDPSTNDLFEIAKDGVLLCKLINVAVPTTIDERAINTKRLLNPWERNENHTLCLNSAKAIGCTVVNIGTQDLIEGRRHLVLGLISQIIKIQLLANLNLKKTPQLLELVGWDSKDMEELMSLPPEKILLRWMNFHLKKTEYKKIVANFSSDVKDAEAYAHLLNVLASEYTNPSTLAVKNPFERAKLVLEHAEKMGCKRYLTARDIVEGSPNLNLAFVAHIFQIRNGLSTLAKQSSLLDSLLDDTQDSREERVFRLWINSLGNSTYINNVFEDVRNGWVLLETLDKVSPGIVNWKIANKPPIKMPFKKVENCNQVVKIGKQLKFSLVNIAGNDIVQGYKKLILAYLWQLMRCNILQLLKNLRFHSHGKEITDSDILQWANTKVKSSGSQSHIYSFKDKSLSDGIFFLELLSSVQPRAVNWGLVTNGVTDQEKMMNATYIISIARKLGCSIFLLPEDITEVNQKMILTLTASIMYWFLKHPAVVEERTSSDCESQVETISNSTLDDSASDFSAEENMKNDLAIPDLMTDQTCEKDKVKVMTDSDAPSPSESSMRELIH*