AlfalfaGEDB | Msa0761320

M. sativa cultivar zhongmu-4 / Msa0761320

KEGG: K01414
GO: GO:0003674 GO:0003824 GO:0004175 GO:0004222 GO:0005575 GO:0005576 GO:0005622 GO:0005623 GO:0005737 GO:0005739 GO:0005759 GO:0005829 GO:0006465 GO:0006508 GO:0006518 GO:0006807 GO:0008150 GO:0008152 GO:0008233 GO:0008237 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009987 GO:0010035 GO:0010038 GO:0010467 GO:0016485 GO:0016787 GO:0019538 GO:0031974 GO:0034641 GO:0042221 GO:0043170 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043233 GO:0043603 GO:0044237 GO:0044238 GO:0044260 GO:0044267 GO:0044422 GO:0044424 GO:0044429 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0046686 GO:0048046 GO:0050896 GO:0051604 GO:0070011 GO:0070013 GO:0071704 GO:0140096 GO:1901564
PFAM: PF19310.2

Nr:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
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Swissprot:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0761320	sp\|Q94AM1\|OOPDA_ARATH	77.440	789	159	3	15	786	1	787	0.0	1233

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Trembl:

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Query id	Subject id	identity %	alignment length	mis matches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0761320	G7KGF6	98.982	786	8	0	1	786	1	786	0.0	1608

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TFs/TRs:

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Gene ID	Type	Classification
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Protein Kinases:

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Gene ID	Type	Classification
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Network:

Co-expression Network

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Gene1	Gene2	correlation coefficient	p_value	FDR
Msa0185550	Msa0761320	0.813852	2.075284e-51	-8.615850e-47
Msa0380420	Msa0761320	0.813587	2.373837e-51	-8.615850e-47
Msa0476150	Msa0761320	0.815223	1.031789e-51	-8.615850e-47
Msa0709480	Msa0761320	0.810219	1.285147e-50	-8.615850e-47
Msa0720840	Msa0761320	0.957028	7.262808e-115	-8.615850e-47
Msa0761320	Msa0803920	0.884982	1.203688e-71	-8.615850e-47
Msa0761320	Msa0841970	0.959480	1.731438e-117	-8.615850e-47
Msa0761320	Msa1084490	0.811724	6.067055e-51	-8.615850e-47
Msa0761320	Msa1375630	0.813985	1.939931e-51	-8.615850e-47
Msa0761320	Msa1376530	0.803364	3.610580e-49	-8.615850e-47

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PPI

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Gene1	Gene2	Type
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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0761320	MtrunA17_Chr5g0411651	98.982	786	8	0	1	786	1	786	0.0	1608
Msa0761320	MtrunA17_Chr3g0123041	27.787	583	373	17	199	773	153	695	1.64e-54	200
Msa0761320	MtrunA17_Chr3g0079521	24.096	664	453	18	137	784	66	694	4.80e-47	179

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Query id	Subject id	identity %	alignment length	mismatches	gap openings	q. start	q. end	s. start	s. end	e-value	bit score
Msa0761320	AT5G65620.2	76.588	803	169	3	1	786	1	801	0.0	1241
Msa0761320	AT5G65620.1	77.440	789	159	3	15	786	1	787	0.0	1233
Msa0761320	AT5G10540.1	81.662	698	128	0	89	786	2	699	0.0	1209
Msa0761320	AT1G67690.1	26.268	552	365	16	233	778	187	702	3.55e-49	185
Msa0761320	AT5G51540.1	24.540	652	438	18	140	771	67	684	2.60e-48	182

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Find 181 sgRNAs with CRISPR-Local

Find 550 sgRNAs with CRISPR-GE

CRISPR-Local

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CRISPR-Local
sgRNA_sequence	on_target_score	Position	Region
AAAACAAACTCCTTCAAAAG+AGG	0.528565	5_2:-18526296	None:intergenic
AAAATGCCACCGCTGAGAAT+GGG	0.481659	5_2:+18529015	Msa0761320:CDS
AAAATTTGCAACTGTCGATC+TGG	0.407728	5_2:+18533194	Msa0761320:CDS
AAAATTTGGGGAGAACGTTC+TGG	0.328152	5_2:+18528794	Msa0761320:CDS
AAACTTGGCTTGCTTCCTAC+TGG	0.443627	5_2:-18530884	None:intergenic
AAAGCTCATTACAGATAAGA+AGG	0.504735	5_2:+18528836	Msa0761320:CDS
AACCTTGATGAGTTACCATC+AGG	0.524848	5_2:-18530827	None:intergenic
AACGGAGTGTGGAACCTTCG+TGG	0.487427	5_2:+18526983	Msa0761320:CDS
AAGAAGTGCGTTTAAGAAGA+GGG	0.621610	5_2:-18526112	None:intergenic
AAGACCAAAGGGGACAAGGA+AGG	0.557340	5_2:-18526169	None:intergenic

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CRISPR-GE

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sgRNA_sequence	Strand	Position	Region	GC_content
TGAGCATGTTTGATATAAGA+AGG	-	chr5_2:18526034-18526053	None:intergenic	30.0%
TCTTATATCAAACATGCTCA+TGG	+	chr5_2:18526034-18526053	Msa0761320:CDS	30.0%
AAAACAAACTCCTTCAAAAG+AGG	-	chr5_2:18526299-18526318	None:intergenic	30.0%
TTGAATGTAATCACATGTGT+CGG	+	chr5_2:18526756-18526775	Msa0761320:intron	30.0%
TAATCATCTCAAAGCTGTTA+AGG	+	chr5_2:18527068-18527087	Msa0761320:CDS	30.0%
ATGTGTAATTGTGCATTTCT+CGG	+	chr5_2:18527161-18527180	Msa0761320:intron	30.0%
GTCATCATATGCTAAAATTG+AGG	-	chr5_2:18527440-18527459	None:intergenic	30.0%
TCAGCTTCTAGATTTATAAC+AGG	+	chr5_2:18527833-18527852	Msa0761320:intron	30.0%
TGGAGAATTGTGAAAAATGA+TGG	+	chr5_2:18527861-18527880	Msa0761320:intron	30.0%
TTAAATTTCCGCTTCATTGT+CGG	+	chr5_2:18527931-18527950	Msa0761320:intron	30.0%

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Chromosome	Type	Strat	End	Strand	Name
chr5_2	gene	18525999	18534656	18525999	ID=Msa0761320;Name=Msa0761320
chr5_2	mRNA	18525999	18534656	18525999	ID=Msa0761320-mRNA-1;Parent=Msa0761320;Name=Msa0761320-mRNA-1;_AED=0.07;_eAED=0.07;_QI=6\|1\|1\|1\|1\|1\|17\|167\|786
chr5_2	exon	18525999	18526385	18525999	ID=Msa0761320-mRNA-1:exon:8021;Parent=Msa0761320-mRNA-1
chr5_2	exon	18526961	18527128	18526961	ID=Msa0761320-mRNA-1:exon:8022;Parent=Msa0761320-mRNA-1
chr5_2	exon	18527581	18527704	18527581	ID=Msa0761320-mRNA-1:exon:8023;Parent=Msa0761320-mRNA-1
chr5_2	exon	18528147	18528223	18528147	ID=Msa0761320-mRNA-1:exon:8024;Parent=Msa0761320-mRNA-1
chr5_2	exon	18528774	18528917	18528774	ID=Msa0761320-mRNA-1:exon:8025;Parent=Msa0761320-mRNA-1
chr5_2	exon	18529008	18529238	18529008	ID=Msa0761320-mRNA-1:exon:8026;Parent=Msa0761320-mRNA-1
chr5_2	exon	18529302	18529392	18529302	ID=Msa0761320-mRNA-1:exon:8027;Parent=Msa0761320-mRNA-1
chr5_2	exon	18529726	18529847	18529726	ID=Msa0761320-mRNA-1:exon:8028;Parent=Msa0761320-mRNA-1
chr5_2	exon	18530481	18530588	18530481	ID=Msa0761320-mRNA-1:exon:8029;Parent=Msa0761320-mRNA-1
chr5_2	exon	18530677	18530922	18530677	ID=Msa0761320-mRNA-1:exon:8030;Parent=Msa0761320-mRNA-1
chr5_2	exon	18532309	18532454	18532309	ID=Msa0761320-mRNA-1:exon:8031;Parent=Msa0761320-mRNA-1
chr5_2	exon	18532584	18532701	18532584	ID=Msa0761320-mRNA-1:exon:8032;Parent=Msa0761320-mRNA-1
chr5_2	exon	18533192	18533351	18533192	ID=Msa0761320-mRNA-1:exon:8033;Parent=Msa0761320-mRNA-1
chr5_2	exon	18533697	18533728	18533697	ID=Msa0761320-mRNA-1:exon:8034;Parent=Msa0761320-mRNA-1
chr5_2	exon	18533859	18533924	18533859	ID=Msa0761320-mRNA-1:exon:8035;Parent=Msa0761320-mRNA-1
chr5_2	exon	18534152	18534223	18534152	ID=Msa0761320-mRNA-1:exon:8036;Parent=Msa0761320-mRNA-1
chr5_2	exon	18534415	18534656	18534415	ID=Msa0761320-mRNA-1:exon:8037;Parent=Msa0761320-mRNA-1
chr5_2	five_prime_UTR	18525999	18526004	18525999	ID=Msa0761320-mRNA-1:five_prime_utr;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18526005	18526385	18526005	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18526961	18527128	18526961	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18527581	18527704	18527581	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18528147	18528223	18528147	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18528774	18528917	18528774	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18529008	18529238	18529008	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18529302	18529392	18529302	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18529726	18529847	18529726	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18530481	18530588	18530481	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18530677	18530922	18530677	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18532309	18532454	18532309	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18532584	18532701	18532584	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18533192	18533351	18533192	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18533697	18533728	18533697	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18533859	18533924	18533859	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18534152	18534223	18534152	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	CDS	18534415	18534489	18534415	ID=Msa0761320-mRNA-1:cds;Parent=Msa0761320-mRNA-1
chr5_2	three_prime_UTR	18534490	18534656	18534490	ID=Msa0761320-mRNA-1:three_prime_utr;Parent=Msa0761320-mRNA-1

Gene Sequence

>Msa0761320

ATGAGACACGAAGCACTTATTGGACTCCTTCTTATATCAAACATGCTCATGGCAACACGCCTCACACTCACATTCTCACTCTCTCGCTCTTCTCGTTCTCGTATTCACCCTCTTCTTAAACGCACTTCTTGTTCCTTTTTCAACCCTAAGCATTCTCATAAATCCCTTCCTTGTCCCCTTTGGTCTTCTTCCTTTTCCTTCTGCATTGATTCACTTCACAAGTCTACTTCACCTTCGTTTACTTGTTCGGCTTCTTCCATGGCTGCTTCTGCTCTTGATGTTGAAGCTAATCCTCTTTTGAAGGAGTTTGTTTTTCCTCCTTTTGATGTTGTTGAAGCGAAGCATGTGAGACCGGGAATTCGTGCTCTTCTTGAGAAATTGGAACGTGATTTGGAGGAGCTTGAACGGAGTGTGGAACCTTCGTGGCCTAAGTTGGTAGAACCTTTGGAGAAGATTGTGGATAGGTTGGCTGTTGTTTGGGGGATGGTTAATCATCTCAAAGCTGTTAAGGATAATTCTGAGCTCCGTTCAGCCATTGAAGATGTGCAGGCAGAAAAAGTTAAGTTTCAGCTTAGACTAGGTCAAAGCAAGCCTCTTTATAATGCGTTCAAAGCGATTCAAGACTCTCCTGATTGGAAGACACTTAGCGATGCTCGCAAACGAATTGTTGAGAACCAAATAAAGGAGGCAGTTCTTAATGGTGTTTCTCTTGAAGATGATAAAAGAGAACAGTTTAACAAAATTGAACAGGAGCTGGAAAGGTTATCAGAAAAATTTGGGGAGAACGTTCTGGATGCAACCAAAAAGTTTGAAAAGCTCATTACAGATAAGAAGGAGATTGAAGGATTACCTGCTACTGCTCTTGGGTTGGCTGCACAAAGCGCAGTATCTAAGGGGCATGAAAATGCCACCGCTGAGAATGGGCCATGGGTAATTACATTGGATGCTCCAAGTTATATTGCAGTCATGCAACATGCTCGCAACCGTTCTCTGCGTGAGGAAGTCTACCGTGCATATTTAACTCGAGCATCGAGTGGTGATTTGGATAATACTAAACTGATCGAGCAAATTTTAAAGCTGAGGTTGGAAAAGGCCAAGCTTCTCAACTACAATAACTATGCAGAGGTTAGCATGGCAACCAAGATGGCAACTGTTGATAAAGCAGAAGAACTTCTAGAGAAGCTTCGTAAAGCTTCCTGGGATGCTGCAGTACAAGATATGGAAGACCTTAAGAAATTTTCTAAAGACCAGGGTGCATTGGAAGCTGATGATTTGACACATTGGGACATTAGCTTTTGGAGTGAGAGGCTTCGTGAATCAAAATATGACATTAATGAGGAAGAACTGCGCCCATTTTTTTCTCTGCCAAATGTTATGGATGGACTCTTTGACCTTGCAAAAACACTTTTTGGCATTGAAATTGAGCCAGCTGACGGTCTAGCTCCGGTTTGGAATAGTGATGTCAAGTTCTTTCGTGTCAAAGATTCCTCAGGCAGTCCAGTTGCCTATTTTTATTTTGATCCCTACAGTCGTCCTTCCGAAAAAAGGCAAGGTGCGTGGATGGATGAAGTTGTTGCTCGTAGTCGTGTACTGTCGCCTGATGGTAACTCATCAAGGTTGCCTGTGGCCCACATGGTGTGCAATCAAACACCTCCAGTAGGAAGCAAGCCAAGTTTAATGACATTCCGTGAGGTTGAGACTGTCTTCCATGAATTTGGACACGCACTTCAACACATGCTTACTAGGGAAGATGAGGGTCTAGTTGCTGGTATTAGGGGAATAGAGTGGGATGCTGTTGAATTACCTTCTCAGTTTATGGAAAACTGGTGCTACCATAAAAAGACTTTAATGGGCATTGCAAAACATTTTGAAACTGGGGAGACTCTCCCAGAAGACGTATATCAGAAGCTTGTTGCCGCCAGAACTTATCGTGCTGGCACTCAAAGTCTTCGACAGATAAAATTTGCAACTGTCGATCTGGAACTTCATACAAAATATGTTCCTGGGGGACAAGAATCCATCTATGATGTTGATCGCAGAGTTTCTGAGAAAACTCAAGTGATTCCTCCATTGCCAGAGGACAGATTCCTTTGCAGCTTCAGTCATATATTTGCAGGTGGATATGCAGCTGGATACTATAGCTACAAGTGGGCTGAAGTGCTGTCTGCAGATGCTTTCTCTGCATTTGAGGATGCAGGATTGGATGATAACAAGGCTGTTGTAGAAACGGGACACAAGTTCAGGGAGACCATTCTTGCTCTTGGAGGTGGCAAGCCACCACTTGAGGTGTTTGTGCAATTCCGTGGGAGAGAACCAACACCAGATGCATTGCTCAGACACAATGGCCTAATTGCAGCTTAG

Protein sequence

>Msa0761320

MRHEALIGLLLISNMLMATRLTLTFSLSRSSRSRIHPLLKRTSCSFFNPKHSHKSLPCPLWSSSFSFCIDSLHKSTSPSFTCSASSMAASALDVEANPLLKEFVFPPFDVVEAKHVRPGIRALLEKLERDLEELERSVEPSWPKLVEPLEKIVDRLAVVWGMVNHLKAVKDNSELRSAIEDVQAEKVKFQLRLGQSKPLYNAFKAIQDSPDWKTLSDARKRIVENQIKEAVLNGVSLEDDKREQFNKIEQELERLSEKFGENVLDATKKFEKLITDKKEIEGLPATALGLAAQSAVSKGHENATAENGPWVITLDAPSYIAVMQHARNRSLREEVYRAYLTRASSGDLDNTKLIEQILKLRLEKAKLLNYNNYAEVSMATKMATVDKAEELLEKLRKASWDAAVQDMEDLKKFSKDQGALEADDLTHWDISFWSERLRESKYDINEEELRPFFSLPNVMDGLFDLAKTLFGIEIEPADGLAPVWNSDVKFFRVKDSSGSPVAYFYFDPYSRPSEKRQGAWMDEVVARSRVLSPDGNSSRLPVAHMVCNQTPPVGSKPSLMTFREVETVFHEFGHALQHMLTREDEGLVAGIRGIEWDAVELPSQFMENWCYHKKTLMGIAKHFETGETLPEDVYQKLVAARTYRAGTQSLRQIKFATVDLELHTKYVPGGQESIYDVDRRVSEKTQVIPPLPEDRFLCSFSHIFAGGYAAGYYSYKWAEVLSADAFSAFEDAGLDDNKAVVETGHKFRETILALGGGKPPLEVFVQFRGREPTPDALLRHNGLIAA*